Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008248.1 Hibiscus syriacus cultivar Beakdansim tig00110899_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124513
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:2454 original size:2 final size:2
Alignment explanation
Indices: 2447--2479 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
2437 AGCATCTTAC
2447 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2480 AGTTAAGGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3933 original size:15 final size:15
Alignment explanation
Indices: 3915--3944 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
3905 CTGGGAAGGT
3915 GGTACCGATACCATA
1 GGTACCGATACCATA
3930 GGTACCGATACCATA
1 GGTACCGATACCATA
3945 AGGGAGGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (15 bp):
GGTACCGATACCATA
Found at i:4539 original size:23 final size:23
Alignment explanation
Indices: 4496--4539 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
4486 ACATGAAAGT
* *
4496 ATATGTATATGTGTAAGTGAGCC
1 ATATGTATATATGTAAATGAGCC
4519 ATATGTATATATG-AATATGAG
1 ATATGTATATATGTAA-ATGAG
4540 AAATGATAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 16 0.89
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.36
Consensus pattern (23 bp):
ATATGTATATATGTAAATGAGCC
Found at i:4653 original size:31 final size:30
Alignment explanation
Indices: 4614--4705 Score: 130
Period size: 31 Copynumber: 3.0 Consensus size: 30
4604 AGAGTTGAGG
4614 GTTACCTATGTCCTTCGGGACATATGGATA
1 GTTACCTATGTCCTTCGGGACATATGGATA
* * *
4644 GTTTACCTATGTCCTTCAGGATATATGGACA
1 G-TTACCTATGTCCTTCGGGACATATGGATA
* *
4675 GTTACTTATGTTCTTCGGGACATATGGATA
1 GTTACCTATGTCCTTCGGGACATATGGATA
4705 G
1 G
4706 GTCCTTCGGA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
30 26 0.49
31 27 0.51
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (30 bp):
GTTACCTATGTCCTTCGGGACATATGGATA
Found at i:9038 original size:30 final size:29
Alignment explanation
Indices: 8952--9040 Score: 90
Period size: 31 Copynumber: 2.9 Consensus size: 29
8942 AGATTCGAGG
* *
8952 GTTACCTATGTCCTTCGGGACATATGGATA
1 GTTA-CTATGTTCTTCGGGACATATGGACA
* *
8982 GTTTAGCTATG-TCATTCAGGATATATGGACA
1 G-TTA-CTATGTTC-TTCGGGACATATGGACA
9013 GTTACTTATGTTCTTCGGGACATATGGA
1 GTTAC-TATGTTCTTCGGGACATATGGA
9041 TAGGTCTTTC
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
29 1 0.02
30 22 0.46
31 25 0.52
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.36
Consensus pattern (29 bp):
GTTACTATGTTCTTCGGGACATATGGACA
Found at i:13851 original size:34 final size:33
Alignment explanation
Indices: 13824--13905 Score: 128
Period size: 33 Copynumber: 2.5 Consensus size: 33
13814 TCACCTATCA
13824 AAGATGAATTTTTCAATAAGTTGGTCACCAACC
1 AAGATGAATTTTTCAATAAGTTGGTCACCAACC
* * * *
13857 AAGATGAAATTTCCAATAGGTTGGCCACCAACC
1 AAGATGAATTTTTCAATAAGTTGGTCACCAACC
13890 AAGATGAATTTTTCAA
1 AAGATGAATTTTTCAA
13906 CTTGTCAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (33 bp):
AAGATGAATTTTTCAATAAGTTGGTCACCAACC
Found at i:15940 original size:13 final size:13
Alignment explanation
Indices: 15896--15940 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
15886 TTTATTTTTT
15896 ATTAATTATAATC
1 ATTAATTATAATC
*
15909 CTTATATTATAAATC
1 ATTA-ATTAT-AATC
15924 -TTAATTATAATC
1 ATTAATTATAATC
15936 ATTAA
1 ATTAA
15941 ATTAATTTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
12 4 0.14
13 12 0.43
14 8 0.29
15 4 0.14
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTAATTATAATC
Found at i:16880 original size:29 final size:29
Alignment explanation
Indices: 16838--16905 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
16828 AGTTGTGAGT
* * *
16838 GAATTTTTTTGAGGGAACATATGGTAGGA
1 GAATTTTTTAGAGGGAAAAAATGGTAGGA
16867 GAATTTTTTAGAGGGAAAAAATGGTAGGA
1 GAATTTTTTAGAGGGAAAAAATGGTAGGA
*
16896 GACTTTTTTA
1 GAATTTTTTA
16906 AAAGAACAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.35
Consensus pattern (29 bp):
GAATTTTTTAGAGGGAAAAAATGGTAGGA
Found at i:17261 original size:2 final size:2
Alignment explanation
Indices: 17254--17370 Score: 85
Period size: 2 Copynumber: 56.5 Consensus size: 2
17244 CAATTTAGTC
* *
17254 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT -T TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
17295 AT AGT TT AT AT ACT TT AT AGT TT AT AT ACT TT AT AC AT AT ACT AT
1 AT A-T AT AT AT A-T AT AT A-T AT AT AT A-T AT AT AT AT AT A-T AT
* *
17340 AT AGT TT AT AT -T TT AT AT AT AT AT AT AT AT A
1 AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT A
17371 CACACTTACA
Statistics
Matches: 91, Mismatches: 16, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
1 2 0.02
2 82 0.90
3 7 0.08
ACGTcount: A:0.41, C:0.04, G:0.03, T:0.52
Consensus pattern (2 bp):
AT
Found at i:17335 original size:29 final size:27
Alignment explanation
Indices: 17302--17368 Score: 91
Period size: 29 Copynumber: 2.4 Consensus size: 27
17292 TTTATAGTTT
*
17302 ATATACTTTATAGTTTATATACTTTATAC
1 ATATACTATATAGTTTATAT--TTTATAC
*
17331 ATATACTATATAGTTTATATTTTATAT
1 ATATACTATATAGTTTATATTTTATAC
17358 ATATA-TATATA
1 ATATACTATATA
17369 TACACACTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 6 0.17
27 11 0.31
29 19 0.53
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (27 bp):
ATATACTATATAGTTTATATTTTATAC
Found at i:17387 original size:4 final size:4
Alignment explanation
Indices: 17380--22726 Score: 8775
Period size: 4 Copynumber: 1367.2 Consensus size: 4
17370 ACACACTTAC
*
17380 ACAT ACAT GCAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
17428 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
17476 ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
17523 ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
17570 ACAT ACAT ACAT ACAT TCAT ACAT GCAT ACAT ACAT ACAT ACAT TCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
17618 ACAT ACAT ACAT ATAT ACTTT ATAT ATAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT AC-AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
17667 ACAT ACAT ACAAT ACAT -CAT -CAT ACAT ACAT GCAT ACAT ACAT ACAT
1 ACAT ACAT AC-AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
17714 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
17761 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA- AC-T ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
17807 ACAT ACAT ACAT ACAT ACAT ACCT ACAT ACAT ACAT --AT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
17853 ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACCT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
17900 ACAT ACAT ACAT ACAT ACAT ACAT AGACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT --ACAT ACAT ACAT ACAT ACAT ACAT
17950 ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
17996 ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
18043 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT -CAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
18090 ACAT AC-T ACAT ACAT ACAT ACAT ACAT AAAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
18137 ACAT ACAC ATAC ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
18185 ACAT ACAT -CAT ACAT ACAT ACAT ACAT ACAT GCAT GCAT GCAT GCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
18232 ACAT ACAT ACAT GCAT GCAT ACAT AC-T ACAT ATAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
18279 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA- ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
18326 CCAT ACAT ACAT ACAT ACAT -CAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
18373 ACAT ACAT ACAT ACAT ACAC ACCAT ACAT ACAT ACAT ACAT AC-- ACAT
1 ACAT ACAT ACAT ACAT ACAT A-CAT ACAT ACAT ACAT ACAT ACAT ACAT
18420 ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
18467 ACAT ACAT ATAC ATAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
18514 ACAT ACAT ACAT ACAT ACA- ACAT ACA- ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
18560 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
18608 ACAT ACAT ACAT ACAT ACAT ACAG ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
18656 ACAT ACAT ACAT ACA- ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
18703 ACAT AC-T ACAT ACAT ACA- ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
18749 ACAT ACAT ACAT -CCT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
18796 ACAT -CAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
18843 ACAT ACAT ACAT ACAT ACA- ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
18890 ACAT ACAT ACAT ACAT ACAAC ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT AC-AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
18939 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
18987 AC-T CCCAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT -ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
19035 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACCT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19083 ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19130 -CAT ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19176 ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19223 ACAT ACAT A-AT ACAT ACAT ACAT ACAT -CAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19269 ACAT A-AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19316 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
19363 ACAT AC-T ACAT ACAT ACAT ACAT ACAT -CAT GCAT GCAT GCAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
19409 ACAT ACAT -CAT GCAT ACAT ACAT ACAT ATAT ACAT ACAT --AT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19454 ACAT ACAT ACAT ACAT ACAT ACAT -CAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
19501 ACAT ACAT ACAT AC-T ACAT AAAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
19548 ACAT GCAT GCAT ACAT ACAT ACAT GCAT AC-T ACAT ACAT GCAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
19595 ACAT ACAT GCAT ACAT ACAT ACAT ACAT ACA- A-AT ACAT ACTAT ATAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-AT ACAT
* * * * *
19642 ACGT ACGT ACGT ACGT ACGT ACAT ACAT ACAT ACAT -CAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
19689 -CAT ACAT ACAT GCAT GCAT GCAT ACAT -CAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19735 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19783 ACAT ACAT AC-- ACAT ACAT AC-- ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19827 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19874 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19922 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT --AT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
19968 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
20016 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
20062 ACAT ACCT ACAT CCAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT --AT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
20108 ACAT ACAT AC-T AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
20154 ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
20200 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
20248 ACAT ACAT ACAT ACAT ACA- ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
20295 ACAT ACAT -CAT ACAT CCAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
20342 ACAT ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
20389 ACAT ACAT ACATT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T
1 ACAT ACAT ACA-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
20437 ACAT ACA- ACAT ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
20483 ACAT ACAT ACACT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACCT ACAT
1 ACAT ACAT ACA-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
20532 ACAT -CAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
20579 ACAT A-AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
20625 ACAT --AT ACAT ACAT ACAT ACCAT ACAT ACAT ACAT ACAT -CAT ACAT
1 ACAT ACAT ACAT ACAT ACAT A-CAT ACAT ACAT ACAT ACAT ACAT ACAT
*
20671 ACAG ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
20718 ACAT ACAT ACAT ACAT ACAT ACAT A-AT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
20765 ACAT AC-T ACAT ACAT ACAT ACAT A-AT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
20811 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
20859 A-AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT -CCT GCACAT -CAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT --ACAT ACAT ACAT
* *
20906 ACAT ACAT GCAT GC-T ACAT -CAT ACAT --AT ACAT ACAT A-AT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
20949 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT --AT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
20995 ACAT ACAT ACAT ACAT ACAT ACAT ACAT AAAT ACAT ACAT ATAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
21043 ACAT ACAT GCAT GCAT ACAT ACAT ACAT GCAT ACAT ACAT GCAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
21091 ACAT ACAT ACAT ACAT AC-- ACAT ACAT ACAT ACAA ATAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * *
21137 ACAT ATAT ACGT ACGT A-GT ACGT ACAT -CAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
21183 ACAT ACAT ACAT GCA- GCAT ACAT GCAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
21230 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
21278 ACAT ACAT ACAT ACAT CCAT ACAT --AT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
21324 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
21371 ACAT ACCAT ACAT ACAT ACAT ACAT -CAT ACAT ACAT ACAT ACAT ACAT
1 ACAT A-CAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
21419 ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
21465 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
21513 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
21561 ACAT ACAT ACA- ACAT AC-- ACAT ACAT ACAT ACAT AC-T ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
21605 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA- ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
21652 ACAT ACAT -CCT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
21699 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
21747 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
21795 ACAT ACAT AACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT -ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
21843 ACCAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT
1 A-CAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
21891 ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
21938 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
21984 ACAT ACAT ACAT -CAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
22031 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
22079 ACAT AC-T ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT -CAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
22124 ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT -CAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
22170 ACAT AC-T ACAT ACAT ACATT ACGT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACA-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
22218 AC-T ACAT ACAT ACAT ACAT ACAT ACCT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
22265 ACAT AC-- ACAC ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
22311 ACAT ACAT ACAT ACAT ACAT ACAT -CAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
22358 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT --AT ACAT ACAT AC-T
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
22403 ACAT ACAT AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
22450 AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
22497 ACAT ACAT AC-- ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
22542 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
22590 ACAT ACCTAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT ACAT ACAT ACAT
1 ACAT A-C-AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
22639 ACATT AC-T ACAT ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT ACAT
1 ACA-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
22685 ACATT ACAT AC-T ACA- ACAT ACAT ACAT ACAT --AT ACAT ACAT A
1 ACA-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
22727 TACATATATA
Statistics
Matches: 5066, Mismatches: 115, Indels: 324
0.92 0.02 0.06
Matches are distributed among these distances:
2 47 0.01
3 279 0.06
4 4679 0.92
5 52 0.01
6 9 0.00
ACGTcount: A:0.48, C:0.25, G:0.01, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:22737 original size:2 final size:2
Alignment explanation
Indices: 22714--22830 Score: 132
Period size: 2 Copynumber: 59.5 Consensus size: 2
22704 ACATACATAC
* * *
22714 AT AT AC AT AC AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * ** *
22756 AT AA AT GT AT GC AT A- AGT AT A- AT GT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT
22797 AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22831 CATTATTATC
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
1 3 0.03
2 91 0.96
3 1 0.01
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.44
Consensus pattern (2 bp):
AT
Found at i:24429 original size:17 final size:17
Alignment explanation
Indices: 24407--24439 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24397 TAAAAAAAAA
24407 ATTTCTAATTTATTTTT
1 ATTTCTAATTTATTTTT
*
24424 ATTTCTATTTTATTTT
1 ATTTCTAATTTATTTT
24440 ACCATTATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
ATTTCTAATTTATTTTT
Found at i:26009 original size:16 final size:16
Alignment explanation
Indices: 25990--26027 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
25980 ATGAGTGAAA
25990 TAATT-TTATTATATAT
1 TAATTATTATT-TATAT
26006 TAATTATTATTTATAT
1 TAATTATTATTTATAT
26022 T-ATTAT
1 TAATTAT
26028 AAAGGTGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.24
16 11 0.52
17 5 0.24
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TAATTATTATTTATAT
Found at i:26051 original size:2 final size:2
Alignment explanation
Indices: 26044--26102 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
26034 GTTGTTACCC
26044 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26086 TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
26103 GCACACAAAC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:26310 original size:113 final size:114
Alignment explanation
Indices: 26108--26327 Score: 370
Period size: 113 Copynumber: 1.9 Consensus size: 114
26098 TATATGCACA
* *
26108 CAAACACATAATGTGTATGATTTTTTTAGATGGTGTGACCGGTTAATCCAGTCTTAATAAATGAG
1 CAAACACATAATGTGTATGA---TTTTAGATGGTGTGACCAGTTAATCAAGTCTTAATAAATGAG
26173 TGAAATAATCTTATTATAAATATTAATTACTATTATTATAAGGGTATATATG
63 TGAAATAATCTTATTATAAATATTAATTACTATTATTATAAGGGTATATATG
*
26225 CAAACACATAATGTGTCTGA-TTTAGATGGTGTGACCAGTTAATCAAGTCTTAATAAATGAGTGA
1 CAAACACATAATGTGTATGATTTTAGATGGTGTGACCAGTTAATCAAGTCTTAATAAATGAGTGA
*
26289 AATAATCTTATTATAAATATTAATTACTATTATTGTAAG
66 AATAATCTTATTATAAATATTAATTACTATTATTATAAG
26328 CGTGTCTTTA
Statistics
Matches: 99, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
113 80 0.81
117 19 0.19
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (114 bp):
CAAACACATAATGTGTATGATTTTAGATGGTGTGACCAGTTAATCAAGTCTTAATAAATGAGTGA
AATAATCTTATTATAAATATTAATTACTATTATTATAAGGGTATATATG
Found at i:32971 original size:35 final size:36
Alignment explanation
Indices: 32924--32991 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 36
32914 CTAAAACCCA
*
32924 CTTTCCTCCACCAGCGTCGCACGCCC-CGTCCATAG
1 CTTTCCTCCACCAGCGTCACACGCCCTCGTCCATAG
* *
32959 CTTTCCTGCACCAGTGTCACACGCCCTCGTCCA
1 CTTTCCTCCACCAGCGTCACACGCCCTCGTCCA
32992 ATGGTCTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 23 0.79
36 6 0.21
ACGTcount: A:0.15, C:0.47, G:0.16, T:0.22
Consensus pattern (36 bp):
CTTTCCTCCACCAGCGTCACACGCCCTCGTCCATAG
Found at i:38836 original size:12 final size:12
Alignment explanation
Indices: 38809--38866 Score: 62
Period size: 12 Copynumber: 4.8 Consensus size: 12
38799 ACGTAGACAT
* *
38809 CAGAAATCAAAA
1 CAGAATTCAGAA
*
38821 CAGAATTCAGAG
1 CAGAATTCAGAA
* *
38833 CAGAATCCAGAT
1 CAGAATTCAGAA
*
38845 CAGAAATCAGAA
1 CAGAATTCAGAA
38857 CAGAATTCAG
1 CAGAATTCAG
38867 GTAATGTATC
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 37 1.00
ACGTcount: A:0.50, C:0.19, G:0.17, T:0.14
Consensus pattern (12 bp):
CAGAATTCAGAA
Found at i:41368 original size:17 final size:17
Alignment explanation
Indices: 41346--41378 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
41336 TCAAAGTTTT
41346 GGTCAACTGTA-GTCAAC
1 GGTCAAC-GTAGGTCAAC
41363 GGTCAACGTAGGTCAA
1 GGTCAACGTAGGTCAA
41379 TAGTCAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.21
Consensus pattern (17 bp):
GGTCAACGTAGGTCAAC
Found at i:43597 original size:12 final size:12
Alignment explanation
Indices: 43572--43655 Score: 62
Period size: 12 Copynumber: 7.0 Consensus size: 12
43562 ATGGAGATAT
* *
43572 CAGAAATCAAAA
1 CAGAATTCAGAA
43584 CAGAATTCAGAA
1 CAGAATTCAGAA
*
43596 CA-TATATCAGAA
1 CAGAAT-TCAGAA
* *
43608 CAGAATCCAGAT
1 CAGAATTCAGAA
*
43620 CAGAAATCAGAA
1 CAGAATTCAGAA
* * *
43632 CAAAATCCAGAT
1 CAGAATTCAGAA
*
43644 CAGAAATCAGAA
1 CAGAATTCAGAA
43656 AAAAAAATTC
Statistics
Matches: 53, Mismatches: 17, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
11 2 0.04
12 49 0.92
13 2 0.04
ACGTcount: A:0.54, C:0.19, G:0.13, T:0.14
Consensus pattern (12 bp):
CAGAATTCAGAA
Found at i:43609 original size:24 final size:24
Alignment explanation
Indices: 43572--43655 Score: 105
Period size: 24 Copynumber: 3.5 Consensus size: 24
43562 ATGGAGATAT
* *
43572 CAGAAATCAAAACAGAATTCAGAA
1 CAGAAATCAGAACAGAATCCAGAA
* * *
43596 CATATATCAGAACAGAATCCAGAT
1 CAGAAATCAGAACAGAATCCAGAA
* *
43620 CAGAAATCAGAACAAAATCCAGAT
1 CAGAAATCAGAACAGAATCCAGAA
43644 CAGAAATCAGAA
1 CAGAAATCAGAA
43656 AAAAAAATTC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.54, C:0.19, G:0.13, T:0.14
Consensus pattern (24 bp):
CAGAAATCAGAACAGAATCCAGAA
Found at i:48507 original size:21 final size:21
Alignment explanation
Indices: 48483--48522 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
48473 AAAATATCCA
*
48483 AAACAAGCAAATATTCAAAAC
1 AAACAACCAAATATTCAAAAC
*
48504 AAACATCCAAATATTCAAA
1 AAACAACCAAATATTCAAA
48523 TACATAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.60, C:0.20, G:0.03, T:0.17
Consensus pattern (21 bp):
AAACAACCAAATATTCAAAAC
Found at i:50049 original size:18 final size:18
Alignment explanation
Indices: 50028--50062 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50018 AAAATAATAT
*
50028 AATTAGATAAAAAACAAC
1 AATTAAATAAAAAACAAC
*
50046 AATTAAATTAAAAACAA
1 AATTAAATAAAAAACAA
50063 TTTTTTTCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.09, G:0.03, T:0.20
Consensus pattern (18 bp):
AATTAAATAAAAAACAAC
Found at i:56649 original size:26 final size:25
Alignment explanation
Indices: 56620--56681 Score: 106
Period size: 25 Copynumber: 2.4 Consensus size: 25
56610 ATTATGGTTC
56620 AAAATACTTTGTAAAAAATTATTTCA
1 AAAATACTTTGT-AAAAATTATTTCA
*
56646 AAAATACTTTGTAAAAATTATTTCT
1 AAAATACTTTGTAAAAATTATTTCA
56671 AAAATACTTTG
1 AAAATACTTTG
56682 AGTATAAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 23 0.66
26 12 0.34
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.40
Consensus pattern (25 bp):
AAAATACTTTGTAAAAATTATTTCA
Found at i:56661 original size:13 final size:13
Alignment explanation
Indices: 56620--56681 Score: 51
Period size: 12 Copynumber: 4.8 Consensus size: 13
56610 ATTATGGTTC
56620 AAAATACTTTGTAA
1 AAAATACTTTGT-A
*
56634 AAAATTA-TTT-CA
1 AAAA-TACTTTGTA
56646 AAAATACTTTGTA
1 AAAATACTTTGTA
*
56659 AAAATTA-TTTCT-
1 AAAA-TACTTTGTA
56671 AAAATACTTTG
1 AAAATACTTTG
56682 AGTATAAATC
Statistics
Matches: 39, Mismatches: 4, Indels: 12
0.71 0.07 0.22
Matches are distributed among these distances:
11 4 0.10
12 15 0.38
13 9 0.23
14 9 0.23
15 2 0.05
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.40
Consensus pattern (13 bp):
AAAATACTTTGTA
Found at i:58093 original size:79 final size:79
Alignment explanation
Indices: 57959--58118 Score: 248
Period size: 79 Copynumber: 2.0 Consensus size: 79
57949 AAGAGATTAG
* * *
57959 TCTTCTATTAACTTATGTGAATGATGGTTCAAATCTAATTTGTTTGTTAGTATTTTATTCATGCT
1 TCTTCTATTAACTTATGTGAATGATGGTTCAAATATAATTTGTTTGCTAGCATTTTATTCATGCT
58024 TAGTTACTCAAATT
66 TAGTTACTCAAATT
* * * *
58038 TCTTCTGTTAACTTATGTGAATGGTGGTTCAGATATAATTTGTTTGCTAGCATTTTATTCATGTT
1 TCTTCTATTAACTTATGTGAATGATGGTTCAAATATAATTTGTTTGCTAGCATTTTATTCATGCT
*
58103 TAGTTACTTAAATT
66 TAGTTACTCAAATT
58117 TC
1 TC
58119 GTCGCAAGAA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 73 1.00
ACGTcount: A:0.25, C:0.11, G:0.14, T:0.49
Consensus pattern (79 bp):
TCTTCTATTAACTTATGTGAATGATGGTTCAAATATAATTTGTTTGCTAGCATTTTATTCATGCT
TAGTTACTCAAATT
Found at i:62284 original size:15 final size:15
Alignment explanation
Indices: 62264--62311 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 15
62254 AAGTTTAAAC
62264 ATTAAAATGATAATT
1 ATTAAAATGATAATT
*
62279 ATT-AAA--ATAACT
1 ATTAAAATGATAATT
62291 A-TAAAATGATAATT
1 ATTAAAATGATAATT
62305 ATTAAAA
1 ATTAAAA
62312 ATAACTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
11 1 0.04
12 9 0.33
14 9 0.33
15 8 0.30
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (15 bp):
ATTAAAATGATAATT
Found at i:62299 original size:26 final size:27
Alignment explanation
Indices: 62266--62323 Score: 109
Period size: 26 Copynumber: 2.2 Consensus size: 27
62256 GTTTAAACAT
62266 TAAAATGATAATTATT-AAAATAACTA
1 TAAAATGATAATTATTAAAAATAACTA
62292 TAAAATGATAATTATTAAAAATAACTA
1 TAAAATGATAATTATTAAAAATAACTA
62319 TAAAA
1 TAAAA
62324 ATCATAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 16 0.52
27 15 0.48
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (27 bp):
TAAAATGATAATTATTAAAAATAACTA
Found at i:62324 original size:13 final size:13
Alignment explanation
Indices: 62282--62324 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
62272 GATAATTATT
62282 AAAATAACTATAA
1 AAAATAACTATAA
* * *
62295 AATGATAATTATTA
1 AA-AATAACTATAA
62309 AAAATAACTATAA
1 AAAATAACTATAA
62322 AAA
1 AAA
62325 TCATAAATAT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
13 13 0.57
14 10 0.43
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (13 bp):
AAAATAACTATAA
Found at i:62350 original size:20 final size:21
Alignment explanation
Indices: 62307--62352 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
62297 TGATAATTAT
62307 TAAAAATAACTATAAAAATCA
1 TAAAAATAACTATAAAAATCA
*
62328 TAAATATAA-TATAAAAGAT-A
1 TAAAAATAACTATAAAA-ATCA
62348 TAAAA
1 TAAAA
62353 GTGTGTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.26
Consensus pattern (21 bp):
TAAAAATAACTATAAAAATCA
Found at i:70752 original size:17 final size:17
Alignment explanation
Indices: 70730--70806 Score: 79
Period size: 17 Copynumber: 4.4 Consensus size: 17
70720 AACGGTCAAC
70730 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
*
70747 GGTCAACAGTCGGGTCG
1 GGTCAACGGTCGGGTCG
70764 GGTCAATAGTCGAGTCGGGTCG
1 GGTC-A-A--CG-GTCGGGTCG
70786 GGTC-A--GTCGGGTCG
1 GGTCAACGGTCGGGTCG
70800 GGTCAAC
1 GGTCAAC
70807 CCGGTTCAGA
Statistics
Matches: 51, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
14 13 0.25
15 1 0.02
17 20 0.39
18 1 0.02
19 2 0.04
21 1 0.02
22 13 0.25
ACGTcount: A:0.16, C:0.22, G:0.43, T:0.19
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:70795 original size:14 final size:14
Alignment explanation
Indices: 70776--70804 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
70766 TCAATAGTCG
70776 AGTCGGGTCGGGTC
1 AGTCGGGTCGGGTC
70790 AGTCGGGTCGGGTC
1 AGTCGGGTCGGGTC
70804 A
1 A
70805 ACCCGGTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.21, G:0.48, T:0.21
Consensus pattern (14 bp):
AGTCGGGTCGGGTC
Found at i:70834 original size:10 final size:10
Alignment explanation
Indices: 70802--70851 Score: 50
Period size: 9 Copynumber: 5.1 Consensus size: 10
70792 TCGGGTCGGG
*
70802 TCAACCCGGT
1 TCAAACCGGT
*
70812 TCAGACCGG-
1 TCAAACCGGT
70821 TCAAACCGGT
1 TCAAACCGGT
*
70831 TCAAAACTGG-
1 TC-AAACCGGT
70841 TCAAACCGGT
1 TCAAACCGGT
70851 T
1 T
70852 TTCCAGCAGC
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
9 14 0.44
10 12 0.38
11 6 0.19
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (10 bp):
TCAAACCGGT
Found at i:70842 original size:20 final size:19
Alignment explanation
Indices: 70800--70851 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 19
70790 AGTCGGGTCG
* *
70800 GGTCAACCCGGTTCAGACC
1 GGTCAAACCGGTTCAAACC
*
70819 GGTCAAACCGGTTCAAAACT
1 GGTCAAACCGGTTC-AAACC
70839 GGTCAAACCGGTT
1 GGTCAAACCGGTT
70852 TTCCAGCAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.27, C:0.29, G:0.25, T:0.19
Consensus pattern (19 bp):
GGTCAAACCGGTTCAAACC
Found at i:78159 original size:19 final size:17
Alignment explanation
Indices: 78112--78171 Score: 84
Period size: 17 Copynumber: 3.4 Consensus size: 17
78102 AACGGTCAAC
*
78112 GGTCAACGGTCGGGTCG
1 GGTCAACAGTCGGGTCG
78129 GGTCAACAGTCGGGTCG
1 GGTCAACAGTCGGGTCG
*
78146 GGTCAGGTCAGTCGGGTCG
1 GGTCA--ACAGTCGGGTCG
78165 GGTCAAC
1 GGTCAAC
78172 CCGGTTCAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
17 22 0.58
19 16 0.42
ACGTcount: A:0.15, C:0.23, G:0.43, T:0.18
Consensus pattern (17 bp):
GGTCAACAGTCGGGTCG
Found at i:78214 original size:9 final size:9
Alignment explanation
Indices: 78165--78253 Score: 61
Period size: 9 Copynumber: 9.3 Consensus size: 9
78155 AGTCGGGTCG
*
78165 GGTCAACCC
1 GGTCAAACC
*
78174 GGTTCAGACC
1 GG-TCAAACC
* *
78184 CGTCAAACA
1 GGTCAAACC
*
78193 GGTTCAGACC
1 GG-TCAAACC
78203 GGTCAAACC
1 GGTCAAACC
*
78212 GGTTCAAAAC
1 GG-TCAAACC
78222 GGTCAAACC
1 GGTCAAACC
*
78231 GGTTCAAAACT
1 GG-TC-AAACC
*
78242 AGTCAAACC
1 GGTCAAACC
78251 GGT
1 GGT
78254 TTTCCAGCAG
Statistics
Matches: 60, Mismatches: 15, Indels: 10
0.71 0.18 0.12
Matches are distributed among these distances:
9 30 0.50
10 25 0.42
11 5 0.08
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.17
Consensus pattern (9 bp):
GGTCAAACC
Found at i:78237 original size:19 final size:19
Alignment explanation
Indices: 78165--78254 Score: 99
Period size: 19 Copynumber: 4.7 Consensus size: 19
78155 AGTCGGGTCG
* * *
78165 GGTCAACCCGGTTCAGACC
1 GGTCAAACCGGTTCAAAAC
* * * *
78184 CGTCAAACAGGTTCAGACC
1 GGTCAAACCGGTTCAAAAC
78203 GGTCAAACCGGTTCAAAAC
1 GGTCAAACCGGTTCAAAAC
78222 GGTCAAACCGGTTCAAAAC
1 GGTCAAACCGGTTCAAAAC
*
78241 TAGTCAAACCGGTT
1 -GGTCAAACCGGTT
78255 TTCCAGCAGC
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
19 50 0.81
20 12 0.19
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.18
Consensus pattern (19 bp):
GGTCAAACCGGTTCAAAAC
Found at i:80578 original size:57 final size:58
Alignment explanation
Indices: 80480--80592 Score: 183
Period size: 57 Copynumber: 2.0 Consensus size: 58
80470 GTGGTAAATT
*
80480 GTGAAATCTCCTTCCTTAGAGGTTCCTCTCAAGCTTCATTTCCCCTTAGTT-TGGTTG
1 GTGAAATCTCCTTCCTTAGAGGTTCCTATCAAGCTTCATTTCCCCTTAGTTATGGTTG
* * *
80537 GTGAAATCTCCTTCCTTAGAGGTTCCTATCAATCTTTATTTCCCCTTGGTTATGGT
1 GTGAAATCTCCTTCCTTAGAGGTTCCTATCAAGCTTCATTTCCCCTTAGTTATGGT
80593 GGTCATTGGT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
57 47 0.92
58 4 0.08
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.42
Consensus pattern (58 bp):
GTGAAATCTCCTTCCTTAGAGGTTCCTATCAAGCTTCATTTCCCCTTAGTTATGGTTG
Found at i:83034 original size:87 final size:89
Alignment explanation
Indices: 82886--83055 Score: 299
Period size: 87 Copynumber: 1.9 Consensus size: 89
82876 ACACACCCTT
*
82886 TTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATATTTA
1 TTATAGCCAAGTTACCCTAATCATATTAGGATTTTATTATTTCAAATTAATTAAATCTATATTTA
*
82951 ATTAATTGAAATTTAATAATCCTC
66 ATTAATTGAAATTAAATAATCCTC
*
82975 TTATATCCAAGTTACCCTAATCATA-T-GGATTTTATTATTTCAAATTAATTAAATCTATATTTA
1 TTATAGCCAAGTTACCCTAATCATATTAGGATTTTATTATTTCAAATTAATTAAATCTATATTTA
83038 ATTAATTGAAATTAAATA
66 ATTAATTGAAATTAAATA
83056 TTCAGGATTA
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
87 53 0.68
88 1 0.01
89 24 0.31
ACGTcount: A:0.39, C:0.11, G:0.06, T:0.44
Consensus pattern (89 bp):
TTATAGCCAAGTTACCCTAATCATATTAGGATTTTATTATTTCAAATTAATTAAATCTATATTTA
ATTAATTGAAATTAAATAATCCTC
Found at i:98679 original size:2 final size:2
Alignment explanation
Indices: 98672--98710 Score: 60
Period size: 2 Copynumber: 19.0 Consensus size: 2
98662 AACTAAAGTT
*
98672 TA TA TA TA TA TA TA TA TA TA TA TA TA TGA GA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA
98711 ATTTTAATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 33 0.97
3 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (2 bp):
TA
Found at i:102595 original size:20 final size:20
Alignment explanation
Indices: 102570--102608 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
102560 TATAAAAGAG
102570 TCAGTCACAAAGATGATATA
1 TCAGTCACAAAGATGATATA
*
102590 TCAGTCACGAAGATGATAT
1 TCAGTCACAAAGATGATAT
102609 GTCTAATCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (20 bp):
TCAGTCACAAAGATGATATA
Found at i:102866 original size:26 final size:26
Alignment explanation
Indices: 102829--102894 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 26
102819 CAACTCTTTT
*
102829 AATAAATATTTAATTT-AGAATAATTA
1 AATAAAT-TTTAATTTCAAAATAATTA
102855 AATAAGATTTT-ATTTCAAAATAATTA
1 AATAA-ATTTTAATTTCAAAATAATTA
102881 AATAACATTTTAAT
1 AATAA-ATTTTAAT
102895 CAATTCATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 4 0.11
26 27 0.77
27 4 0.11
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (26 bp):
AATAAATTTTAATTTCAAAATAATTA
Found at i:107783 original size:48 final size:48
Alignment explanation
Indices: 107715--108195 Score: 526
Period size: 48 Copynumber: 10.3 Consensus size: 48
107705 CCGCTGTCAC
* * * * ** *
107715 AGGGAATACCAAACCTTGGAAAAAAGAGATATGTTCCGCTT-CTTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTAC-TCTGA
* *
107763 AGGGAATATCAAATCATGGA-AAAAGAGACCTGTTCCACTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* * * *
107810 AGGGAATGTCAGATC-T---G--G-TAGACTTGTTCCACTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
*
107851 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* * * * **
107899 AGGAAATATCAGATCTTGGAGAAAATAGATTTGTTCCACTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* * *
107947 AGGGAATATCAAATCTTTGAGAAGAGAGACCTGTTTCGCTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* * * **
107995 AGGAAATATCAGATCTTGGAGAAGATAGATTTGTTCCACTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* *
108043 AGGGAATATCAAATCTTTGAGAAGAGAGACCTGTTCCGCTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
* * * *
108091 AGGGAATATCAGATC-T---G--G-CAGACTTGTTCCACTTACTCTAA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
108132 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
1 AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
*
108180 AGGGAATATCAGATCT
1 AGGGAATATCAAATCT
108196 GGGGGAGTTG
Statistics
Matches: 360, Mismatches: 57, Indels: 32
0.80 0.13 0.07
Matches are distributed among these distances:
41 67 0.19
42 3 0.01
44 1 0.00
45 2 0.01
46 1 0.00
47 38 0.11
48 248 0.69
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28
Consensus pattern (48 bp):
AGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTACTCTGA
Found at i:107962 original size:96 final size:95
Alignment explanation
Indices: 107741--108195 Score: 641
Period size: 96 Copynumber: 4.9 Consensus size: 95
107731 TGGAAAAAAG
* * * * *
107741 AGATATGTTCCGCTT-CTTCTGAAGGGAATATCAAATCATGGA-AAAAGAGACCTGTTCCACTTA
1 AGATTTGTTCCACTTAC-TCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTA
*
107804 CTCTGAAGGGAATGTCAGATC-T-G-G---T
65 CTCTGAAGGGAATATCAGATCTTGGAGAAAT
*
107829 AGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTAC
1 AGATTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTAC
*
107894 TCTGAAGGAAATATCAGATCTTGGAGAAAAT
66 TCTGAAGGGAATATCAGATCTTGGAG-AAAT
* *
107925 AGATTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTTGAGAAGAGAGACCTGTTTCGCTTAC
1 AGATTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTAC
*
107990 TCTGAAGGAAATATCAGATCTTGGAGAAGAT
66 TCTGAAGGGAATATCAGATCTTGGAGAA-AT
*
108021 AGATTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTTGAGAAGAGAGACCTGTTCCGCTTAC
1 AGATTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTAC
*
108086 TCTGAAGGGAATATCAGATC-T-G-G---C
66 TCTGAAGGGAATATCAGATCTTGGAGAAAT
* * *
108110 AGACTTGTTCCACTTACTCTAAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCACTTAC
1 AGATTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTAC
108175 TCTGAAGGGAATATCAGATCT
66 TCTGAAGGGAATATCAGATCT
108196 GGGGGAGTTG
Statistics
Matches: 338, Mismatches: 18, Indels: 20
0.90 0.05 0.05
Matches are distributed among these distances:
88 36 0.11
89 120 0.36
90 1 0.00
91 1 0.00
92 1 0.00
93 1 0.00
94 1 0.00
95 3 0.01
96 174 0.51
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Consensus pattern (95 bp):
AGATTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGAAGAGAGACCTGTTCCGCTTAC
TCTGAAGGGAATATCAGATCTTGGAGAAAT
Found at i:109373 original size:18 final size:18
Alignment explanation
Indices: 109342--109412 Score: 58
Period size: 18 Copynumber: 3.8 Consensus size: 18
109332 TTGAACCCTC
109342 CTTTTATTTTTTTCTTTT
1 CTTTTATTTTTTTCTTTT
109360 CTTTT-TTTTCTTTC-TTT
1 CTTTTATTTT-TTTCTTTT
109377 CATTTTTCATTTTTTGTCTTTTT
1 C--TTTT-ATTTTTT-TC-TTTT
*
109400 CATTT-TTTTTTTC
1 CTTTTATTTTTTTC
109413 AAGCGAAATA
Statistics
Matches: 44, Mismatches: 1, Indels: 16
0.72 0.02 0.26
Matches are distributed among these distances:
17 8 0.18
18 11 0.25
19 10 0.23
20 2 0.05
21 9 0.20
23 4 0.09
ACGTcount: A:0.06, C:0.14, G:0.01, T:0.79
Consensus pattern (18 bp):
CTTTTATTTTTTTCTTTT
Found at i:109389 original size:23 final size:23
Alignment explanation
Indices: 109363--109406 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
109353 TTCTTTTCTT
109363 TTTTTTCT-TTCTTTCATTTTTCA
1 TTTTTTCTCTT-TTTCATTTTTCA
*
109386 TTTTTTGTCTTTTTCATTTTT
1 TTTTTTCTCTTTTTCATTTTT
109407 TTTTTCAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.07, C:0.14, G:0.02, T:0.77
Consensus pattern (23 bp):
TTTTTTCTCTTTTTCATTTTTCA
Found at i:120903 original size:13 final size:14
Alignment explanation
Indices: 120885--120913 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
120875 ACTATACTAC
120885 AATATATA-CATAT
1 AATATATAGCATAT
120898 AATATATAGCATAT
1 AATATATAGCATAT
120912 AA
1 AA
120914 AATTTATGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.34
Consensus pattern (14 bp):
AATATATAGCATAT
Done.