Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008250.1 Hibiscus syriacus cultivar Beakdansim tig00110902_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31935

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9194--9233
10
4.2
9
87
9
53
82
0
5
12
0.82
10243--10780
55
9.8
55
91
0
817
30
14
26
28
1.95
11794--11819
1
26.0
1
100
0
52
100
0
0
0
0.00
15950--16098
16
8.6
17
81
12
74
48
3
2
45
1.30
16021--16184
2
85.0
2
76
15
159
46
1
3
47
1.30
16364--16407
2
21.5
2
90
4
70
52
2
0
45
1.13
16600--16673
37
2.1
36
84
5
96
41
8
10
39
1.70
16664--16734
18
3.9
18
90
3
81
49
2
2
45
1.31
16675--16734
2
30.0
2
86
6
86
50
1
1
46
1.21
16772--16862
21
4.3
20
71
16
67
38
6
7
47
1.58
16787--16889
22
4.8
21
77
11
84
36
5
8
48
1.58
16834--17104
12
23.3
11
66
24
68
45
2
2
49
1.31
16959--17107
6
25.2
6
69
20
59
48
2
0
48
1.17
16834--16980
48
3.0
47
74
12
134
42
3
4
50
1.38
17017--17076
21
3.0
21
79
11
63
51
1
0
46
1.10
17042--17107
21
3.2
21
81
16
77
50
0
0
50
1.00
16892--17086
65
2.9
65
72
21
161
47
3
1
48
1.27
17079--17104
11
2.4
11
100
0
52
46
0
0
53
1.00
17517--17586
14
5.3
13
85
13
83
11
14
22
51
1.74
17517--17606
38
2.4
38
88
7
130
13
13
20
53
1.72
17493--17572
24
3.3
24
78
13
85
12
13
22
51
1.75
17556--17606
24
2.1
24
85
7
68
15
11
17
54
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18685--18723
16
2.4
16
100
0
78
7
12
23
56
1.62
19559--19670
40
2.8
40
81
8
129
43
16
8
32
1.76
23693--23753
5
12.2
5
85
0
59
60
8
1
29
1.35
23725--23895
15
11.4
15
81
0
126
48
14
11
25
1.77
23727--23895
5
33.8
5
79
0
113
47
14
11
26
1.78
30095--30229
65
2.1
64
88
4
200
28
22
17
32
1.96

Tables:   1

The End!