Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008251.1 Hibiscus syriacus cultivar Beakdansim tig00110903_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 521115
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
File 2 of 3
Found at i:208584 original size:9 final size:10
Alignment explanation
Indices: 208564--208608 Score: 58
Period size: 9 Copynumber: 4.7 Consensus size: 10
208554 TATAAAACAC
208564 AATAATTAAT
1 AATAATTAAT
208574 AATAA-TAAT
1 AATAATTAAT
*
208583 AATAATAAAT
1 AATAATTAAT
208593 -ATAATTAAT
1 AATAATTAAT
*
208602 AAGAATT
1 AATAATT
208609 TTTTCGACCC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
9 17 0.57
10 13 0.43
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (10 bp):
AATAATTAAT
Found at i:209002 original size:134 final size:134
Alignment explanation
Indices: 208755--209002 Score: 288
Period size: 134 Copynumber: 1.9 Consensus size: 134
208745 AGATGACATT
* * * * *
208755 GCTCATATGTGATGAAGAGTTTGGGTCGTCTAAGGTTGACATGGCTCCTACGTGATGAAGAGATC
1 GCTCATACGTGATGAAGAGTTTGGGTCATCTAAGGTTGACACGGCTCCTACATAATGAAGAGATC
** * * *
208820 TGGTCAGGGGATGACACTGCTCAATGTGATAAAGAGTTCTTGGTCATCTTTAGGAAGAGTGATAA
66 TGGTCAGGGGATGACACAACTCAACGCGATAAAGAGTTCTTGGCCATCTTTAGGAAGAGTGATAA
208885 CACA
131 CACA
* * * *
208889 GCTCATACGTGTTGAAGAGTTCT-GGTTATC-AAGGATTGACACGGCTCTTACATAATGAGGAGA
1 GCTCATACGTGATGAAGAGTT-TGGGTCATCTAAGG-TTGACACGGCTCCTACATAATGAAGAGA
* *
208952 TCTGGTC-GGGTGATGACACAACTTATACGCGATGAAGAGTTC-TGGCCATCT
64 TCTGGTCAGGG-GATGACACAACTCA-ACGCGATAAAGAGTTCTTGGCCATCT
209003 AAAGGTGATA
Statistics
Matches: 94, Mismatches: 16, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
133 7 0.07
134 73 0.78
135 14 0.15
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (134 bp):
GCTCATACGTGATGAAGAGTTTGGGTCATCTAAGGTTGACACGGCTCCTACATAATGAAGAGATC
TGGTCAGGGGATGACACAACTCAACGCGATAAAGAGTTCTTGGCCATCTTTAGGAAGAGTGATAA
CACA
Found at i:209384 original size:66 final size:65
Alignment explanation
Indices: 209301--209433 Score: 151
Period size: 66 Copynumber: 2.0 Consensus size: 65
209291 TCCAGGGTTT
** * * * *
209301 TTTTGGTTTCAAAAGAAACCGATTCAGAGATGATACTTCAAAAGAAGTTGTCTGAAAAGAGACAA
1 TTTTGGTTTCAAAAGAAACAAACTCAAAGATGATACTTAAAAAGAAATTGTCT-AAAA-AGACAA
209366 AA
64 AA
* ** *
209368 TTTT-GTTTCCAAAGAAACAAACTCAAAGATTTTTCTTAAAAAGAAATTGTCTAAAAAGACAAAA
1 TTTTGGTTTCAAAAGAAACAAACTCAAAGATGATACTTAAAAAGAAATTGTCTAAAAAGACAAAA
209432 TT
1 TT
209434 CTATTTTTAG
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
64 10 0.18
65 4 0.07
66 38 0.68
67 4 0.07
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (65 bp):
TTTTGGTTTCAAAAGAAACAAACTCAAAGATGATACTTAAAAAGAAATTGTCTAAAAAGACAAAA
Found at i:215415 original size:4 final size:4
Alignment explanation
Indices: 215408--215435 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
215398 TATATATATA
215408 TATT TATT TATT TATT TATT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT
215436 AATGAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TATT
Found at i:215731 original size:2 final size:2
Alignment explanation
Indices: 215724--215760 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
215714 TGAAAAATAC
215724 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
215761 GACTAAAGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:216480 original size:34 final size:34
Alignment explanation
Indices: 216432--216496 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
216422 TGATAACGAT
*
216432 GGTGGCTCGACGACGACTGGAACGTTGGCTCGTC
1 GGTGGCTCGACGACGACTGGAACGTGGGCTCGTC
*
216466 GGTGGCTCGGCGACGACTGGAACGTGGGCTC
1 GGTGGCTCGACGACGACTGGAACGTGGGCTC
216497 AGGTGGAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.14, C:0.26, G:0.42, T:0.18
Consensus pattern (34 bp):
GGTGGCTCGACGACGACTGGAACGTGGGCTCGTC
Found at i:216652 original size:3 final size:3
Alignment explanation
Indices: 216638--216686 Score: 80
Period size: 3 Copynumber: 15.7 Consensus size: 3
216628 TGTAAAACAC
216638 AAT AATT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AATT AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
216685 AA
1 AA
216687 GAATTTTTTC
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
3 38 0.86
4 6 0.14
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:219314 original size:22 final size:22
Alignment explanation
Indices: 219270--219314 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
219260 CTTCTACACC
** *
219270 AGTATCGATACTCCCATGCCAT
1 AGTATCGATACTCAAATGACAT
*
219292 AGTATCGATACTGAAATGACAT
1 AGTATCGATACTCAAATGACAT
219314 A
1 A
219315 TTGGAATCTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.27
Consensus pattern (22 bp):
AGTATCGATACTCAAATGACAT
Found at i:219362 original size:20 final size:20
Alignment explanation
Indices: 219337--219390 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
219327 ATGTTATCTT
* * *
219337 GGTATCGATACCACCCCATG
1 GGTATCGATACCAACACATA
219357 GGTATCGATACCAACACATA
1 GGTATCGATACCAACACATA
*
219377 TGTATCGATACCAA
1 GGTATCGATACCAA
219391 ACCTATAGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (20 bp):
GGTATCGATACCAACACATA
Found at i:219794 original size:18 final size:18
Alignment explanation
Indices: 219768--219803 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
219758 TTTAACTACT
219768 CAAAACTCTCTTGCATTC
1 CAAAACTCTCTTGCATTC
*
219786 CAAAGCTCTCTTGCATTC
1 CAAAACTCTCTTGCATTC
219804 TTTAACTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.33, G:0.08, T:0.33
Consensus pattern (18 bp):
CAAAACTCTCTTGCATTC
Found at i:222170 original size:30 final size:30
Alignment explanation
Indices: 222090--222173 Score: 87
Period size: 32 Copynumber: 2.7 Consensus size: 30
222080 ATAAGGAATG
*
222090 ATATGAACATGTGATATGTGAACATAAGAGA
1 ATATG-ACATGAGATATGTGAACATAAGAGA
* * * * *
222121 TTAAGTGATATGAGCTATGTGAACATATGGGA
1 AT-A-TGACATGAGATATGTGAACATAAGAGA
222153 ATATGACATGAGATATGTGAA
1 ATATGACATGAGATATGTGAA
222174 TTATATAGAA
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
30 16 0.38
31 2 0.05
32 22 0.52
33 2 0.05
ACGTcount: A:0.40, C:0.06, G:0.25, T:0.29
Consensus pattern (30 bp):
ATATGACATGAGATATGTGAACATAAGAGA
Found at i:222709 original size:12 final size:12
Alignment explanation
Indices: 222694--222725 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
222684 TAATAATGTT
222694 AATAATGATAAG
1 AATAATGATAAG
*
222706 AATAATAATAAG
1 AATAATGATAAG
222718 AATAATGA
1 AATAATGA
222726 ACTGATATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25
Consensus pattern (12 bp):
AATAATGATAAG
Found at i:225897 original size:10 final size:9
Alignment explanation
Indices: 225879--225955 Score: 51
Period size: 8 Copynumber: 9.0 Consensus size: 9
225869 TATTAAAAAA
225879 ATATAATAT
1 ATATAATAT
*
225888 AATATGATAT
1 -ATATAATAT
*
225898 TTAT-ATAT
1 ATATAATAT
225906 ATAT-ATAT
1 ATATAATAT
225914 ATATATATAT
1 ATATA-ATAT
225924 ATATTAA-AT
1 ATA-TAATAT
*
225933 ATTTAATA-
1 ATATAATAT
225941 AT-TAATA-
1 ATATAATAT
225948 AT-TAATAT
1 ATATAATAT
225956 TTTAATTTAA
Statistics
Matches: 58, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
7 12 0.21
8 20 0.34
9 8 0.14
10 16 0.28
11 2 0.03
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (9 bp):
ATATAATAT
Found at i:225906 original size:2 final size:2
Alignment explanation
Indices: 225879--225927 Score: 66
Period size: 2 Copynumber: 25.0 Consensus size: 2
225869 TATTAAAAAA
*
225879 AT AT A- AT AT A- AT AT GAT AT TT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT
225920 AT AT AT AT
1 AT AT AT AT
225928 TAAATATTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
1 2 0.05
2 38 0.90
3 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:226882 original size:23 final size:23
Alignment explanation
Indices: 226845--226923 Score: 99
Period size: 23 Copynumber: 3.4 Consensus size: 23
226835 TAGATAATTA
*
226845 AAATAAAATTATTTCAAATAAAT
1 AAATAATATTATTTCAAATAAAT
226868 -AATGAATATTATTTCAAATAAAT
1 AAAT-AATATTATTTCAAATAAAT
* *
226891 AAATAATATGATTTCAAA-AATT
1 AAATAATATTATTTCAAATAAAT
226913 AAATAAATATT
1 AAAT-AATATT
226924 TTAAAAATAT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
22 10 0.20
23 36 0.73
24 3 0.06
ACGTcount: A:0.57, C:0.04, G:0.03, T:0.37
Consensus pattern (23 bp):
AAATAATATTATTTCAAATAAAT
Found at i:226929 original size:20 final size:22
Alignment explanation
Indices: 226840--226931 Score: 73
Period size: 23 Copynumber: 4.1 Consensus size: 22
226830 TTAAATAGAT
* *
226840 AATTAAAATAAAATTATTTCAAA
1 AATT-AAATAATATGATTTCAAA
* *
226863 TAAAT-AATGAATATTATTTCAAA
1 -AATTAAAT-AATATGATTTCAAA
*
226886 TAAATAAATAATATGATTTCAAA
1 -AATTAAATAATATGATTTCAAA
*
226909 AATTAAATAA-AT-ATTTTAAA
1 AATTAAATAATATGATTTCAAA
226929 AAT
1 AAT
226932 ATTTTTATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
20 10 0.16
21 2 0.03
22 12 0.20
23 31 0.51
24 6 0.10
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (22 bp):
AATTAAATAATATGATTTCAAA
Found at i:226945 original size:22 final size:22
Alignment explanation
Indices: 226918--226971 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
226908 AAATTAAATA
*
226918 AATATTTTAAAAATATTTTTAT
1 AATATTTTAAAAATATTTTTAG
* *
226940 AATATTATAAATATATTTTTAG
1 AATATTTTAAAAATATTTTTAG
*
226962 AATAATTTAA
1 AATATTTTAA
226972 TATGAAATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
AATATTTTAAAAATATTTTTAG
Found at i:229338 original size:48 final size:48
Alignment explanation
Indices: 229284--229395 Score: 188
Period size: 48 Copynumber: 2.3 Consensus size: 48
229274 AAAGATGAAA
* *
229284 AAGAGAAGGCTGAAGATGAATTGGAAGGAGAAGATGGAGAGGAACAAG
1 AAGAGAAGGCTGAAGATGAATTGAAAGGAGAAGATGAAGAGGAACAAG
229332 AAGAGAAGGCTGAAGATGAATTGAAAGGAGAAGATGAAGAGGAACAAG
1 AAGAGAAGGCTGAAGATGAATTGAAAGGAGAAGATGAAGAGGAACAAG
**
229380 AAGAGAACTCTGAAGA
1 AAGAGAAGGCTGAAGA
229396 AAGTGAAGAG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 60 1.00
ACGTcount: A:0.48, C:0.05, G:0.36, T:0.11
Consensus pattern (48 bp):
AAGAGAAGGCTGAAGATGAATTGAAAGGAGAAGATGAAGAGGAACAAG
Found at i:229371 original size:24 final size:24
Alignment explanation
Indices: 229294--229371 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
229284 AAGAGAAGGC
*
229294 TGAAGATGAATTGGAAGGAGAAGA
1 TGAAGATGAATTGAAAGGAGAAGA
* * * * *
229318 TGGAGAGGAA--CAAGAAGAGAAGGC
1 TGAAGATGAATTGAA-AGGAGAA-GA
229342 TGAAGATGAATTGAAAGGAGAAGA
1 TGAAGATGAATTGAAAGGAGAAGA
229366 TGAAGA
1 TGAAGA
229372 GGAACAAGAA
Statistics
Matches: 39, Mismatches: 11, Indels: 8
0.67 0.19 0.14
Matches are distributed among these distances:
22 1 0.03
23 6 0.15
24 24 0.62
25 6 0.15
26 2 0.05
ACGTcount: A:0.47, C:0.03, G:0.37, T:0.13
Consensus pattern (24 bp):
TGAAGATGAATTGAAAGGAGAAGA
Found at i:232019 original size:18 final size:18
Alignment explanation
Indices: 231998--232033 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
231988 GGATGAGTCT
* *
231998 GAAGAAGAGGAGGAGGAA
1 GAAGAAAAGGAAGAGGAA
232016 GAAGAAAAGGAAGAGGAA
1 GAAGAAAAGGAAGAGGAA
232034 CAGAATGTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (18 bp):
GAAGAAAAGGAAGAGGAA
Found at i:237298 original size:20 final size:20
Alignment explanation
Indices: 237273--237320 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
237263 GTCAGAGTGT
*
237273 GGCGGCGGACGGCTGACGGC
1 GGCGGCGGACGGCGGACGGC
* *
237293 GGCGGCAGACGGCGGGCGGC
1 GGCGGCGGACGGCGGACGGC
*
237313 GGCAGCGG
1 GGCGGCGG
237321 CCAGCAGGCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.10, C:0.29, G:0.58, T:0.02
Consensus pattern (20 bp):
GGCGGCGGACGGCGGACGGC
Found at i:237310 original size:17 final size:16
Alignment explanation
Indices: 237290--237321 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
237280 GACGGCTGAC
237290 GGCGGCGGCAGACGGCG
1 GGCGGCGGCAG-CGGCG
237307 GGCGGCGGCAGCGGC
1 GGCGGCGGCAGCGGC
237322 CAGCAGGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.09, C:0.31, G:0.59, T:0.00
Consensus pattern (16 bp):
GGCGGCGGCAGCGGCG
Found at i:238940 original size:13 final size:13
Alignment explanation
Indices: 238922--238949 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
238912 CCATTCCTGC
238922 TGTACTTGCTTTT
1 TGTACTTGCTTTT
238935 TGTACTTGCTTTT
1 TGTACTTGCTTTT
238948 TG
1 TG
238950 AAACACACTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.14, G:0.18, T:0.61
Consensus pattern (13 bp):
TGTACTTGCTTTT
Found at i:241221 original size:15 final size:15
Alignment explanation
Indices: 241189--241254 Score: 55
Period size: 15 Copynumber: 4.4 Consensus size: 15
241179 TTACATATAT
241189 TTTTAA-AAAT-TTA
1 TTTTAATAAATATTA
* *
241202 ATTTAATTAATATTA
1 TTTTAATAAATATTA
* *
241217 TTTTAACCAAAATTTTA
1 TTTTAA--TAAATATTA
*
241234 ATTTAATAAATATTA
1 TTTTAATAAATATTA
241249 TTTTAA
1 TTTTAA
241255 CCATATATTA
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
13 5 0.13
14 3 0.08
15 20 0.51
17 11 0.28
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (15 bp):
TTTTAATAAATATTA
Found at i:241239 original size:32 final size:32
Alignment explanation
Indices: 241193--241257 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
241183 ATATATTTTT
*
241193 AAAAATTTAATTTAATTAATATTATTTTAACC
1 AAAAATTTAATTTAATAAATATTATTTTAACC
*
241225 AAAATTTTAATTTAATAAATATTATTTTAACC
1 AAAAATTTAATTTAATAAATATTATTTTAACC
241257 A
1 A
241258 TATATTAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (32 bp):
AAAAATTTAATTTAATAAATATTATTTTAACC
Found at i:241273 original size:31 final size:32
Alignment explanation
Indices: 241210--241273 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
241200 TAATTTAATT
* **
241210 AATATTATTTTAACCAAAATTTTAATTTAATA
1 AATATTATTTTAACCAAAATATTAATAAAATA
*
241242 AATATTATTTTAACC-ATATATTAATAAAATA
1 AATATTATTTTAACCAAAATATTAATAAAATA
241273 A
1 A
241274 TAATAATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
31 13 0.46
32 15 0.54
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (32 bp):
AATATTATTTTAACCAAAATATTAATAAAATA
Found at i:241277 original size:3 final size:3
Alignment explanation
Indices: 241263--241338 Score: 70
Period size: 3 Copynumber: 26.0 Consensus size: 3
241253 AACCATATAT
* * *
241263 TAA TAA -AA TAA TAA TAA TAA -ATG TCA T-A TTA TACA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA-A TAA TAA TAA
*
241307 TAA TAA TAA TAA CAA TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
241339 GATATGACGA
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
2 7 0.11
3 51 0.84
4 3 0.05
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:250406 original size:2 final size:2
Alignment explanation
Indices: 250399--250427 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
250389 AAGTCACCAT
250399 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
250428 TAGGTATGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:255965 original size:21 final size:21
Alignment explanation
Indices: 255913--255971 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
255903 TTTAATGCAT
* *
255913 AAGGGATCAATCCTTTGGTAA
1 AAGGGATCGATCTTTTGGTAA
* *
255934 AAGGGACCGATCTTTTGGTGA
1 AAGGGATCGATCTTTTGGTAA
255955 AAGGGATCGATCATTTT
1 AAGGGATCGATC-TTTT
255972 TCAAATAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 28 0.88
22 4 0.12
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.31
Consensus pattern (21 bp):
AAGGGATCGATCTTTTGGTAA
Found at i:262316 original size:180 final size:182
Alignment explanation
Indices: 261950--262337 Score: 568
Period size: 182 Copynumber: 2.1 Consensus size: 182
261940 GTAATAATAA
* * * * *
261950 ATATAACAGG--AAAATATGACAAAACCGGTCACGAAAAGACAAAATCGGTAAAGTGCTACCGGA
1 ATATAACAGGTAAAAATATGACAAAACCGATCACGAAAAGACAAAACCGGTAAAGAGCGACCGAA
262013 TATATTGAAAGTGTCGATACTTTAATATAAGTACCGACACATTATGAATTTAAAAGAGAAGCAGT
66 TATATTGAAAGTGTCGATACTTTAATATAAGTACCGACACATTATGAATTTAAAAGAGAAGCAGT
* *
262078 TTTAGCGCCTATAAAGTGTCGATACTTTATAAATATATATCGATCCACAACT
131 TTTAGCGCCTATAAAGTGTCGATACTTTATAAAAATATATCGATCCACAACG
* * * * * *
262130 ATATAACAGGTAAAAATATGACAAAACCGATCTCTAAAGGACAAACCCGGTATAGAGCGACTGAA
1 ATATAACAGGTAAAAATATGACAAAACCGATCACGAAAAGACAAAACCGGTAAAGAGCGACCGAA
* * * *
262195 TATATTGAAAGTGTTGATACTTTAATATAAGTATCGACACTTTGTGAATTTAAAAGAGAAGCAG-
66 TATATTGAAAGTGTCGATACTTTAATATAAGTACCGACACATTATGAATTTAAAAGAGAAGCAGT
*
262259 TTTAGCG-CTATAAAGTGTCGATACTTTATAAAAATATATCGATCCATAACG
131 TTTAGCGCCTATAAAGTGTCGATACTTTATAAAAATATATCGATCCACAACG
*
262310 ATATAACAGGTTAAAAATATGAGAAAAC
1 ATATAACAGG-TAAAAATATGACAAAAC
262338 GGGTAAAGCG
Statistics
Matches: 186, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
180 61 0.33
181 23 0.12
182 102 0.55
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.27
Consensus pattern (182 bp):
ATATAACAGGTAAAAATATGACAAAACCGATCACGAAAAGACAAAACCGGTAAAGAGCGACCGAA
TATATTGAAAGTGTCGATACTTTAATATAAGTACCGACACATTATGAATTTAAAAGAGAAGCAGT
TTTAGCGCCTATAAAGTGTCGATACTTTATAAAAATATATCGATCCACAACG
Found at i:262989 original size:19 final size:18
Alignment explanation
Indices: 262965--263034 Score: 52
Period size: 18 Copynumber: 3.8 Consensus size: 18
262955 GACCAATTAT
262965 ATAATATTATAGGTAGAAA
1 ATAATATTATAGGTAG-AA
* ** *
262984 ATAATATGGATACCT-GTAT
1 ATAATAT-TATAGGTAG-AA
263003 ATAATATTATAGGTAGAA
1 ATAATATTATAGGTAGAA
* *
263021 ATGATATTTTAGGT
1 ATAATATTATAGGT
263035 TGTATAAATG
Statistics
Matches: 38, Mismatches: 11, Indels: 5
0.70 0.20 0.09
Matches are distributed among these distances:
18 17 0.45
19 17 0.45
20 4 0.11
ACGTcount: A:0.43, C:0.03, G:0.17, T:0.37
Consensus pattern (18 bp):
ATAATATTATAGGTAGAA
Found at i:264716 original size:33 final size:32
Alignment explanation
Indices: 264656--264756 Score: 157
Period size: 33 Copynumber: 3.0 Consensus size: 32
264646 AAATAGATGG
264656 AGTGGTGAAAGAAGTTGGGGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTT--GGGTGTTGAGGGGTGA
264690 AGTGGTTGAAAGAAGTTGGGTGTTGAGGGGTGA
1 AGTGG-TGAAAGAAGTTGGGTGTTGAGGGGTGA
*
264723 AGTGGTGAAAAGAAGTTGAGTGTTGAGGGGTGA
1 AGTGGTG-AAAGAAGTTGGGTGTTGAGGGGTGA
264756 A
1 A
264757 AAATTTGGAG
Statistics
Matches: 64, Mismatches: 1, Indels: 5
0.91 0.01 0.07
Matches are distributed among these distances:
32 2 0.03
33 46 0.72
34 5 0.08
35 11 0.17
ACGTcount: A:0.27, C:0.00, G:0.49, T:0.25
Consensus pattern (32 bp):
AGTGGTGAAAGAAGTTGGGTGTTGAGGGGTGA
Found at i:267096 original size:200 final size:201
Alignment explanation
Indices: 266742--267903 Score: 1410
Period size: 200 Copynumber: 5.8 Consensus size: 201
266732 GTAAGAATAT
*
266742 GTGTCGATACATTTATAAAAAGCGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * * * * *
266807 GGTAATTTTATAATATAACTGGTATAAATATACCAGTTTTATGTGAGAATAGGTCTACATAATGT
66 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACATAATGT
* * ** * *
266872 ATCAACACTTTTTCATAA--TGTGTCGATACTTTTTGTCCAGAATTAATGTCC-AAAATGATGAA
131 ATCGACAC-TTTT-AGAATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAAGGATGAA
266934 CGCATAAA
194 CGCATAAA
** * *
266942 GTGTCGATACATTTATTGAAAGTGTCGATCCCAGAAACATCGAAACCCATAAATATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * * * *
267007 GGTAAATTTACAATGTAACCAGTATAACTAAACCGGTTTTATGAGAGAATAGATGTACATAATGT
66 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACATAATGT
* * * * *
267072 ATCGACACTTCTAGAATTTGTGTCGATACTGTTTGTCCAAAAGGAATGCCCAAAAAGGGTGCACG
131 ATCGACACTTTTAGAATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAAGGATGAACG
*
267137 CAAAAA
196 CATAAA
* *
267143 GTGTCGATACATTTATAAACAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATTTAAT
1 GTGTCGATACATTTATAAA-AAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAAT
* * * * * *
267208 AGGTAATTTTTCAATGTAATCGGTATATATATAACGGTTTTATGAGAGAATATGTCTACA-ATAT
65 AGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACATA-AT
* * * *
267272 GTATCGACACTTGT-GTAATTTGTGTCGATACTTTTGGTCCAGAAGGAATGCCCAAAAAGGGTGC
129 GTATCGACACTTTTAG-AATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAAGGATGA
*
267336 AC-CATTAA
193 ACGCATAAA
* * *
267344 GTGTCGATACATTTATAAAAACTGTCGATCCCAAAAACAACGAAACTCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* ** * * *
267409 GGTAATTTTTTAATATAACCGGTATAAATATACTGGTTTTATGTGAGAATAGGTCTACATAATGT
66 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACATAATGT
** * * * *
267474 ATCGACACTTTTTTATTTTGTGTCGATACCTTTTGTCCAGAATGAATGCCC-AAAATGATGAACG
131 ATCGACACTTTTAGAATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAAGGATGAACG
*
267538 CATACA
196 CATAAA
** * * *
267544 GTGTCGATACATTTATTGAAAGTGTCGATACCAGAAACATCGAAACCCATAAATATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
** * * * *
267609 CATAAATTTACAATGTAACCGATATAACTATATCGGTTTTATAAGAGAATAGGTCTACA-ACATG
66 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACATA-ATG
* * * * * *
267673 TATCAACACTTGTGGAATTTGTGTCGATACTTTTTATCCAGAAGGAATG-CCAAAAAGGGTTGTA
130 TATCGACACTTTTAGAATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAA-GGATGAA
267737 CGCATAAA
194 CGCATAAA
* * * *
267745 GTGTCGATACATTTTTAAAAAGTGTCGATCTCAAAAACATCGAAACCGATAATTATAATGCAATA
1 GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * * * *
267810 GGTAAATTTTCAATGTGACCGGTATAAATATACCGGTTTTATGAGAAAATAGGTC-ATTATAAAG
66 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTA-CATAATG
*
267874 TATCGACAATTGTTA-AATTTGTGTCGATAC
130 TATCGACACTT-TTAGAATTTGTGTCGATAC
267904 CATTTTAAAT
Statistics
Matches: 816, Mismatches: 131, Indels: 29
0.84 0.13 0.03
Matches are distributed among these distances:
198 3 0.00
199 15 0.02
200 446 0.55
201 198 0.24
202 154 0.19
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.31
Consensus pattern (201 bp):
GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACATAATGT
ATCGACACTTTTAGAATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCCAAAAAGGATGAACG
CATAAA
Found at i:267511 original size:402 final size:397
Alignment explanation
Indices: 266742--267909 Score: 1452
Period size: 402 Copynumber: 2.9 Consensus size: 397
266732 GTAAGAATAT
*
266742 GTGTCGATACATTTATAAAAAGCGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * * *
266807 GGTAATTTTAT-AATATAACTGGTATAAATATACCAGTTTTATGTGAGAATAGGTCTAC-ATAAT
66 GGTAATTTT-TCAATGTAAC-GGTAT-AATATAACGGTTTTATGAGAGAATAGGTCTACAAT-AT
* * * ** * *
266870 GTATCAACACTT-TTTCATAATGTGTCGATACTTTTTGTCCAGAATTAATGTCC-AAAATGATGA
127 GTATCAACACTTGTGTAAT-TTGTGTCGATACTTTTTGTCCAGAAGGAATG-CCAAAAAGGGTGA
** * *
266933 ACGCATAAAGTGTCGATACATTTATTGAAAGTGTCGATCCCAGAAACATCGAAACCCATAAATAT
190 ACGCATAAAGTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAA-CCATAATTAT
* * * * * *
266998 AATGTAATAGGTAAATTTACAATGTAACCAGTATAACTAAACCGGTTTTATGAGAGAATAGATGT
254 AATGTAATAGGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCT
267063 ACATAATGTATCGACACTTC-TAGAATTTGTGTCGATA-CTGTTTGTCCAAAAGGAATGCCCAAA
319 ACATAATGTATCGACACTTCTTA-AATTTGTGTCGATACCT-TTTGTCCAAAAGGAATGCCC-AA
* *
267126 AAGGGTGCACGCAAAAA
381 AAGGATGAACGCAAAAA
* *
267143 GTGTCGATACATTTATAAACAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATTTAAT
1 GTGTCGATACATTTATAAA-AAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAAT
*
267208 AGGTAATTTTTCAATGTAATCGGTATATATATAACGGTTTTATGAGAGAATATGTCTACAATATG
65 AGGTAATTTTTCAATGTAA-CGGTATA-ATATAACGGTTTTATGAGAGAATAGGTCTACAATATG
* * *
267273 TATCGACACTTGTGTAATTTGTGTCGATACTTTTGGTCCAGAAGGAATGCCCAAAAAGGGTGCAC
128 TATCAACACTTGTGTAATTTGTGTCGATACTTTTTGTCCAGAAGGAATG-CCAAAAAGGGTGAAC
* * *
267338 -CATTAAGTGTCGATACATTTATAAAAACTGTCGATCCCAAAAACAACGAAACTCATAATTATAA
192 GCATAAAGTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAAC-CATAATTATAA
* * * * *
267402 TGTAATAGGTAATTTTTTAATATAACCGGTATAAATATACTGGTTTTATGTGAGAATAGGTCTAC
256 TGTAATAGGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTAC
* * * * * *
267467 ATAATGTATCGACACTTTTTTATTTTGTGTCGATACCTTTTGTCCAGAATGAATGCCCAAAATGA
321 ATAATGTATCGACACTTCTTAAATTTGTGTCGATACCTTTTGTCCAAAAGGAATGCCCAAAAGGA
* *
267532 TGAACGCATACA
386 TGAACGCAAAAA
** * * *
267544 GTGTCGATACATTTATTGAAAGTGTCGATACCAGAAACATCGAAACCCATAAATATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
** * * * * * *
267609 CATAAATTTACAATGTAACCGATATAACTATATCGGTTTTATAAGAGAATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAA-CGGTATAA-TATAACGGTTTTATGAGAGAATAGGTCTACAATATGT
* * *
267674 ATCAACACTTGTGGAATTTGTGTCGATACTTTTTATCCAGAAGGAATGCCAAAAAGGGTTGTACG
129 ATCAACACTTGTGTAATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCAAAAAGGG-TGAACG
* *
267739 CATAAAGTGTCGATACATTTTTAAAAAGTGTCGATCTCAAAAACATCGAAACCGATAATTATAAT
193 CATAAAGTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACC-ATAATTATAAT
* * * *
267804 GCAATAGGTAAATTTTCAATGTGACCGGTATAAATATACCGGTTTTATGAGAAAATAGGTC-ATT
257 GTAATAGGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTA-C
* * *
267868 ATAAAGTATCGACAATTGTTAAATTTGTGTCGATACCATTTT
321 ATAATGTATCGACACTTCTTAAATTTGTGTCGATACC-TTTT
267910 AAATATCGCG
Statistics
Matches: 663, Mismatches: 88, Indels: 31
0.85 0.11 0.04
Matches are distributed among these distances:
399 11 0.02
400 144 0.22
401 196 0.30
402 293 0.44
403 19 0.03
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (397 bp):
GTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
GGTAATTTTTCAATGTAACGGTATAATATAACGGTTTTATGAGAGAATAGGTCTACAATATGTAT
CAACACTTGTGTAATTTGTGTCGATACTTTTTGTCCAGAAGGAATGCCAAAAAGGGTGAACGCAT
AAAGTGTCGATACATTTATAAAAAGTGTCGATCCCAAAAACATCGAAACCATAATTATAATGTAA
TAGGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACATAAT
GTATCGACACTTCTTAAATTTGTGTCGATACCTTTTGTCCAAAAGGAATGCCCAAAAGGATGAAC
GCAAAAA
Found at i:269430 original size:9 final size:9
Alignment explanation
Indices: 269391--269456 Score: 78
Period size: 9 Copynumber: 7.3 Consensus size: 9
269381 GGTCAATAAA
*
269391 GATGAAGAT
1 GATGATGAT
* *
269400 GACGATGAA
1 GATGATGAT
* *
269409 CATGATGAA
1 GATGATGAT
269418 GATGATGAT
1 GATGATGAT
269427 GATGATGAT
1 GATGATGAT
269436 GATGATGAT
1 GATGATGAT
*
269445 TATGATGAT
1 GATGATGAT
269454 GAT
1 GAT
269457 CTAAACAAGT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 48 1.00
ACGTcount: A:0.38, C:0.03, G:0.30, T:0.29
Consensus pattern (9 bp):
GATGATGAT
Found at i:269441 original size:6 final size:6
Alignment explanation
Indices: 269391--269456 Score: 78
Period size: 6 Copynumber: 11.0 Consensus size: 6
269381 GGTCAATAAA
* * * * *
269391 GATGAA GATGAC GATGAA CATGAT GAAGAT GATGAT GATGAT GATGAT
1 GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT
*
269439 GATGAT TATGAT GATGAT
1 GATGAT GATGAT GATGAT
269457 CTAAACAAGT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 51 1.00
ACGTcount: A:0.38, C:0.03, G:0.30, T:0.29
Consensus pattern (6 bp):
GATGAT
Found at i:271283 original size:200 final size:199
Alignment explanation
Indices: 270940--272109 Score: 1359
Period size: 200 Copynumber: 5.8 Consensus size: 199
270930 AACTTACAAA
* *** *
270940 CATAAAGTGTCGATACAATTT-TAAAAAGTATCGATCCCATAAACATCGAAATTTATAAATATAA
1 CATAAAGTGTCGATAC-ATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAA
* *
271004 TGTAATAGGTAAATTTACAATGTAACCGGTATAACTAAACCAGTTTTATGA-GAGAATAGATCTA
65 TGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCAGTTTTAT-ATGAGAATAGATCTA
* * *
271068 CATAATGTATCGACACTTTTGGAATTTGTGTCGATACTATTTGTCCAGAAGGAATGCCCAAAAAG
129 CATAATGTATCGACACTTTT-GAATTTGTGTCGATACTTTTTGTCCAAAATGAATGCCCAAAAAG
* *
271133 GTGTACC
193 GTGAACG
* *
271140 CATAAAGTGTCGATACATGTT-TAAAAAGAATCGATCCCAAAAACATCGAAACCCATAATTATAA
1 CATAAAGTGTCGATACAT-TTATAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAA
* ** * * *
271204 TGTAATAGGTAATTTTGTAATATAGCCGGTATAAATATACCAGTTTTATATGAGAATAGGTCTAC
65 TGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCAGTTTTATATGAGAATAGATCTAC
* * * * *
271269 ATAATGTGTCGACACTTTTGAATGTTGTGTCGATACTGTTTGTCCAAAATAAATTCCCAAAATGG
130 ATAATGTATCGACACTTTTGAAT-TTGTGTCGATACTTTTTGTCCAAAATGAATGCCCAAAAAGG
271334 TGAACG
194 TGAACG
* * *
271340 CATAGAGTGTCGATACATTTATAAAAAGTATCGATCCCAAAAATATTGAAACCGATAATTATAAT
1 CATAAAGTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAT
* * * *
271405 GTAATACGTAAATTTACAATGTAACCGGTATAAATAAACC-GATTTT-TTTGAGAAAATAGATAT
66 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCAG-TTTTATATGAG--AATAGATCT
* * * * * ***
271468 ACATAATGTATCGACACTTGTGGAATTTATGTCGATACTTTTAGTCCACAAGGAAAATCCAAAAA
128 ACATAATGTATCGACACTT-TTGAATTTGTGTCGATACTTTTTGTCCAAAATGAATGCCCAAAAA
* *
271533 GGGTGCACC
192 -GGTGAACG
* * ** * *
271542 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCTAAAACATTAAAACCAATAAATATAAT
1 CATAAAGTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAT
* ** * * * * * *
271607 GTAATAGGTAATTTTGTAATATAACTGATATAAATATAACAGTTTTATGTGAGAATAGGTCTACA
66 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCAGTTTTATATGAGAATAGATCTACA
* * * * *
271672 TAATGTGTCGACACTTTTGAATGTTGTGTCGATAATTTTTGTCCAGAATGAATTCCCAAAAGGGT
131 TAATGTATCGACACTTTTGAAT-TTGTGTCGATACTTTTTGTCCAAAATGAATGCCCAAAAAGGT
271737 GAACG
195 GAACG
* * *
271742 AATAAAGTGTCAATACATTTATAAAACGTATCGATCCCAAAAACATCGAAACCGATAATTATAAT
1 CATAAAGTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAT
* * * * **
271807 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCAGTTTTATGTTAAAATAGGTGAACA
66 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCAGTTTTATATGAGAATAGATCTACA
* *
271872 TATTGTATCGACACGTTTT-AGATTTGTGTCGATACTTTTTGTCCAAAATGAATG-CCAAAAGGG
131 TAATGTATCGACAC-TTTTGA-ATTTGTGTCGATACTTTTTGTCCAAAATGAATGCCCAAAAAGG
*
271935 TTGCACG
194 -TGAACG
* * * *
271942 CATAAAGTGTCGATATATTTTGTAAAAAGTATCGATCCTAAAAACATCAAAACCGATAATTATAA
1 CATAAAGTGTCGATACA-TTTATAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAA
* * * * **
272007 TGTAATAGGTAAATTTACAATGTAACTGGTATAAATGTACCAGTTTTATGA-GAAAATATATGAA
65 TGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCAGTTTTAT-ATGAGAATAGATCTA
272071 CATAATGTATCGACACGTTTT-AGATTTGTGTCGATACTT
129 CATAATGTATCGACAC-TTTTGA-ATTTGTGTCGATACTT
272110 GTAAATAATG
Statistics
Matches: 829, Mismatches: 124, Indels: 33
0.84 0.13 0.03
Matches are distributed among these distances:
199 24 0.03
200 442 0.53
201 253 0.31
202 104 0.13
203 6 0.01
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (199 bp):
CATAAAGTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAT
GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCAGTTTTATATGAGAATAGATCTACA
TAATGTATCGACACTTTTGAATTTGTGTCGATACTTTTTGTCCAAAATGAATGCCCAAAAAGGTG
AACG
Found at i:271687 original size:402 final size:400
Alignment explanation
Indices: 270940--272108 Score: 1575
Period size: 402 Copynumber: 2.9 Consensus size: 400
270930 AACTTACAAA
* *** *
270940 CATAAAGTGTCGATACAATTT-TAAAAAGTATCGATCCCATAAACATCGAAATTTATAAATATAA
1 CATAAAGTGTCGATAC-ATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAA
* * *
271004 TGTAATAGGTAAATTTACAATGTAACCGGTATAACTAAACCAGTTTTATGAGAGAATAGATCTAC
65 TGTAATAGGTAAATTTACAATGTAACCGGTATAAATAAACCAGTTTTATGAGAAAATAGATATAC
* ***
271069 ATAATGTATCGACACTTTTGGAATTTGTGTCGATACTATTTGTCCAGAAGGAATGCCCAAAAA-G
130 ATAATGTATCGACACTTTTGGAATTTGTGTCGATACT-TTTGTCCAAAAGGAAAATCCAAAAAGG
* * * * * *
271133 GTGTACCCATAAAGTGTCGATACATGTTTAAAAAGAATCGATCCCAAAAACATCGAAACCCATAA
194 GTGCACCCATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCTAAAACATCAAAACCAATAA
* * *
271198 TTATAATGTAATAGGTAATTTTGTAATATAGCCGGTATAAATATACCAGTTTTATATGAGAATAG
259 TTATAATGTAATAGGTAATTTTGTAATATAACTGGTATAAATATACCAGTTTTATGTGAGAATAG
271263 GTCTACATAATGTGTCGACACTTTTGAATGTTGTGTCGATACTGTTTGTCCAAAATAAATTCCCA
324 GTCTACATAATGTGTCGACACTTTTGAATGTTGTGTCGATACTGTTTGTCCAAAATAAATTCCCA
*
271328 AAATGGTGAACG
389 AAAGGGTGAACG
* * *
271340 CATAGAGTGTCGATACATTTATAAAAAGTATCGATCCCAAAAATATTGAAACCGATAATTATAAT
1 CATAAAGTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAT
* * *
271405 GTAATACGTAAATTTACAATGTAACCGGTATAAATAAACCGATTTTTTTGAGAAAATAGATATAC
66 GTAATAGGTAAATTTACAATGTAACCGGTATAAATAAACC-AGTTTTATGAGAAAATAGATATAC
* * *
271470 ATAATGTATCGACACTTGTGGAATTTATGTCGATACTTTTAGTCCACAAGGAAAATCCAAAAAGG
130 ATAATGTATCGACACTTTTGGAATTTGTGTCGATACTTTT-GTCCAAAAGGAAAATCCAAAAAGG
*
271535 GTGCACCCATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCTAAAACATTAAAACCAATAA
194 GTGCACCCATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCTAAAACATCAAAACCAATAA
* * *
271600 ATATAATGTAATAGGTAATTTTGTAATATAACTGATATAAATATAACAGTTTTATGTGAGAATAG
259 TTATAATGTAATAGGTAATTTTGTAATATAACTGGTATAAATATACCAGTTTTATGTGAGAATAG
* * * *
271665 GTCTACATAATGTGTCGACACTTTTGAATGTTGTGTCGATAATTTTTGTCCAGAATGAATTCCCA
324 GTCTACATAATGTGTCGACACTTTTGAATGTTGTGTCGATACTGTTTGTCCAAAATAAATTCCCA
271730 AAAGGGTGAACG
389 AAAGGGTGAACG
* * *
271742 AATAAAGTGTCAATACATTTATAAAACGTATCGATCCCAAAAACATCGAAACCGATAATTATAAT
1 CATAAAGTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAT
* ** *
271807 GTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCAGTTTTATGTTAAAATAGGTGA-AC
66 GTAATAGGTAAATTTACAATGTAACCGGTATAAATAAACCAGTTTTATGAGAAAATAGAT-ATAC
* * *
271871 ATATTGTATCGACACGTTTTAG-ATTTGTGTCGATACTTTTTGTCCAAAATG--AATGCC-AAAA
130 ATAATGTATCGACAC-TTTTGGAATTTGTGTCGATAC-TTTTGTCCAAAAGGAAAAT-CCAAAAA
* *
271932 GGGTTGCACGCATAAAGTGTCGATATATTTTGTAAAAAGTATCGAT-CCTAAAAACATCAAAACC
192 GGG-TGCACCCATAAAGTGTCGATACATTTT-TAAAAAGTATCGATCCCT-AAAACATCAAAACC
* * ** * * * *
271996 GATAATTATAATGTAATAGGTAAATTTACAATGTAACTGGTATAAATGTACCAGTTTTATGAGAA
254 AATAATTATAATGTAATAGGTAATTTTGTAATATAACTGGTATAAATATACCAGTTTTATGTGAG
** ** *
272061 AATATATGAACATAATGTATCGACACGTTTT-AGAT-TTGTGTCGATACT
319 AATAGGTCTACATAATGTGTCGACAC-TTTTGA-ATGTTGTGTCGATACT
272109 TGTAAATAAT
Statistics
Matches: 679, Mismatches: 77, Indels: 25
0.87 0.10 0.03
Matches are distributed among these distances:
399 14 0.02
400 123 0.18
401 240 0.35
402 302 0.44
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (400 bp):
CATAAAGTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAAT
GTAATAGGTAAATTTACAATGTAACCGGTATAAATAAACCAGTTTTATGAGAAAATAGATATACA
TAATGTATCGACACTTTTGGAATTTGTGTCGATACTTTTGTCCAAAAGGAAAATCCAAAAAGGGT
GCACCCATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCCTAAAACATCAAAACCAATAATT
ATAATGTAATAGGTAATTTTGTAATATAACTGGTATAAATATACCAGTTTTATGTGAGAATAGGT
CTACATAATGTGTCGACACTTTTGAATGTTGTGTCGATACTGTTTGTCCAAAATAAATTCCCAAA
AGGGTGAACG
Found at i:272084 original size:602 final size:602
Alignment explanation
Indices: 270940--272109 Score: 1622
Period size: 602 Copynumber: 1.9 Consensus size: 602
270930 AACTTACAAA
* ***
270940 CATAAAGTGTCGATACAATTTTAAAAAGTATCGATCCCATAAACATCGAAATTTATAAATATAAT
1 CATAAAGTGTCGATACAATTTTAAAAAGTATCGATCCCATAAACATCAAAACCAATAAATATAAT
* * *
271005 GTAATAGGTAAATTTACAATGTAACCGGTATAACTAAACCAGTTTTATGAGAGAATAGATCTACA
66 GTAATAGGTAAATTTACAATATAACCGATATAAATAAACCAGTTTTATGAGAGAATAGATCTACA
*
271070 TAATGTATCGACACTTTTGGAATTTGTGTCGATACTATTTGTCCAGAAGGAATGCCCAAAAAGGT
131 TAATGTATCGACACTTTTGGAATTTGTGTCGATAATATTTGTCCAGAAGGAATGCCCAAAAAGGT
* * *
271135 GTACCCATAAAGTGTCGATACATGTTTAAAAAGAATCGATCCCAAAAACATCGAAACCCATAATT
196 GAACCAATAAAGTGTCAATACATGTTTAAAAAGAATCGATCCCAAAAACATCGAAACCCATAATT
* ** * *
271200 ATAATGTAATAGGTAATTTTGTAATATAGCCGGTATAAATATACCAGTTTTATATGAGAATAGGT
261 ATAATGTAATAGGTAAATTTACAATATAACCGGTATAAATATACCAGTTTTATATGAAAATAGGT
* *
271265 CTACATAATGTGTCGACACTTTTGAATGTTGTGTCGATACTGTTTGTCCAAAATAAATTCCCAAA
326 CAACATAATGTATCGACACTTTTGAATGTTGTGTCGATACTGTTTGTCCAAAATAAATTCCCAAA
* * * **
271330 ATGGTGAACGCATAGAGTGTCGATACATTTATAAAAAGTATCGATCCCAAAAATATTGAAACCGA
391 AGGGTGAACGCATAAAGTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCAAAACCGA
* *
271395 TAATTATAATGTAATACGTAAATTTACAATGTAACCGGTATAAATAAACCGATTTTTTTGAGAAA
456 TAATTATAATGTAATACGTAAATTTACAATGTAACCGGTATAAATAAACCGAGTTTTATGAGAAA
*
271460 ATAGATATACATAATGTATCGACAC-TTGTGGAATTTATGTCGATACTTTTAGTCCACAAGGAAA
521 ATAGATATACATAATGTATCGACACGTTGTAG-ATTTATGTCGATACTTTTAGTCCACAAGGAAA
271524 ATCCAAAAAGGGTGCACC
585 ATCCAAAAAGGGTGCACC
* *
271542 CATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCC-TAAAACATTAAAACCAATAAATATAA
1 CATAAAGTGTCGATACAATTTTAAAAAGTATCGATCCCAT-AAACATCAAAACCAATAAATATAA
* ** * * *
271606 TGTAATAGGTAATTTTGTAATATAACTGATATAAATATAA-CAGTTTTATGTGAGAATAGGTCTA
65 TGTAATAGGTAAATTTACAATATAACCGATATAAATA-AACCAGTTTTATGAGAGAATAGATCTA
* * * * *
271670 CATAATGTGTCGACACTTTT-GAATGTTGTGTCGATAATTTTTGTCCAGAATGAATTCCCAAAAG
129 CATAATGTATCGACACTTTTGGAAT-TTGTGTCGATAATATTTGTCCAGAAGGAATGCCCAAAAA
* * * *
271734 GGTGAACGAATAAAGTGTCAATACAT-TTATAAAACGTATCGATCCCAAAAACATCGAAACCGAT
193 GGTGAACCAATAAAGTGTCAATACATGTT-TAAAAAGAATCGATCCCAAAAACATCGAAACCCAT
* * *
271798 AATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCAGTTTTATGTTAAAAT
257 AATTATAATGTAATAGGTAAATTTACAATATAACCGGTATAAATATACCAGTTTTATATGAAAAT
* * * *
271863 AGGTGAACATATTGTATCGACACGTTTT-AGAT-TTGTGTCGATACTTTTTGTCCAAAATGAA-T
322 AGGTCAACATAATGTATCGACAC-TTTTGA-ATGTTGTGTCGATACTGTTTGTCCAAAATAAATT
* * * * *
271925 GCCAAAAGGGTTGCACGCATAAAGTGTCGATATATTTTGTAAAAAGTATCGATCCTAAAAACATC
385 CCCAAAAGGG-TGAACGCATAAAGTGTCGATACA-TTTATAAAAAGTATCGATCCCAAAAACATC
* * **
271990 AAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACTGGTATAAATGTACC-AGTTTT
448 AAAACCGATAATTATAATGTAATACGTAAATTTACAATGTAACCGGTATAAATAAACCGAGTTTT
* * *
272054 ATGAGAAAATATATGA-ACATAATGTATCGACACGTTTTAGATTTGTGTCGATACTT
513 ATGAGAAAATAGAT-ATACATAATGTATCGACACGTTGTAGATTTATGTCGATACTT
272110 GTAAATAATG
Statistics
Matches: 496, Mismatches: 62, Indels: 20
0.86 0.11 0.03
Matches are distributed among these distances:
601 16 0.03
602 388 0.78
603 92 0.19
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (602 bp):
CATAAAGTGTCGATACAATTTTAAAAAGTATCGATCCCATAAACATCAAAACCAATAAATATAAT
GTAATAGGTAAATTTACAATATAACCGATATAAATAAACCAGTTTTATGAGAGAATAGATCTACA
TAATGTATCGACACTTTTGGAATTTGTGTCGATAATATTTGTCCAGAAGGAATGCCCAAAAAGGT
GAACCAATAAAGTGTCAATACATGTTTAAAAAGAATCGATCCCAAAAACATCGAAACCCATAATT
ATAATGTAATAGGTAAATTTACAATATAACCGGTATAAATATACCAGTTTTATATGAAAATAGGT
CAACATAATGTATCGACACTTTTGAATGTTGTGTCGATACTGTTTGTCCAAAATAAATTCCCAAA
AGGGTGAACGCATAAAGTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCAAAACCGA
TAATTATAATGTAATACGTAAATTTACAATGTAACCGGTATAAATAAACCGAGTTTTATGAGAAA
ATAGATATACATAATGTATCGACACGTTGTAGATTTATGTCGATACTTTTAGTCCACAAGGAAAA
TCCAAAAAGGGTGCACC
Found at i:276620 original size:199 final size:197
Alignment explanation
Indices: 276230--276946 Score: 774
Period size: 199 Copynumber: 3.6 Consensus size: 197
276220 ACTTAAATAT
*
276230 GTGTCGATACATTTTCTAAAAGTATCGA-CCCAAAAAACATCGAAACCAATAATTATAATGTAAT
1 GTGTCGATACATTAT-TAAAAGTATCGATCCC-AAAAACATCGAAACCAATAATTATAATGTAAT
* * * * * *
276294 AGGTAAA-TTAACAATGTAACCGGTATAAATATATCGGTTAATTAGAAAACATGTCAACATAATG
64 AGGTAAATTTAA-AATGTAACCGGTATAAATATATCGTTTTATGAGAAAATAGGTCATCATAATG
* * *
276358 TACCGACACTTGTGT-AATTTGTGTTGATACTTATTGTCCAGATGAATGCCCAAACGAGGTGCAC
128 TATCGACACTTAT-TAAATTTGTGTTGATACTTATTGTCCAAATGAATG-CCAAACGAGGTGCAC
276422 GCATAAA
191 GCATAAA
* *
276429 GTGTCGATACAATTATTAAAAGTATCGATCCCAATAAA-ATCGAAACCGATAATTAGAATGTAAT
1 GTGTCGATAC-ATTATTAAAAGTATCGATCCCAA-AAACATCGAAACCAATAATTATAATGTAAT
* * * *
276493 ATGTAGATTTAAAATGTAACCGGTATAAATATACCAGTTTTATGAGAAAATAGGTCATCATAAAG
64 AGGTAAATTTAAAATGTAACCGGTATAAATATATC-GTTTTATGAGAAAATAGGTCATCATAATG
**
276558 TATCGACACTTATTAAATTTGTGTCAATACATT-TTGTCCATAATGAATGCCAAACG-GGTGCAC
128 TATCGACACTTATTAAATTTGTGTTGATAC-TTATTGTCCA-AATGAATGCCAAACGAGGTGCAC
276621 GCATAAA
191 GCATAAA
* * * * * **
276628 GTGTCGATACATTTATTAAAAGTATAGATTCCAAAAACATCGAAATCGATAATTACAATGGGATA
1 GTGTCGATACA-TTATTAAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAATA
* * * ** * * *
276693 TGTAAATTTATAATTTAACCAATAGAAATATATCGGTTTTATGAAAAAATAGGTC-TAAATAATG
65 GGTAAATTTAAAATGTAACCGGTATAAATATATC-GTTTTATGAGAAAATAGGTCAT-CATAATG
* * * * *
276757 TATCGACA-TTCTTTAAGTTTGTGTTGATACTTGTT-TCCAGAATAAATGCCTAACGAGGTGCAC
128 TATCGACACTT-ATTAAATTTGTGTTGATACTTATTGTCCA-AATGAATGCCAAACGAGGTGCAC
276820 GCATAAA
191 GCATAAA
*
276827 GTGTCGATACA-T-TTAAAATTGTATCGAT-CCAAAAAGCATAGAAACCAATAATTATAATGTAA
1 GTGTCGATACATTATTAAAA--GTATCGATCCCAAAAA-CATCGAAACCAATAATTATAATGTAA
** * * * *
276889 TAGGTAAATTTGCAATGTTACCGGTATAAATATATCGGTTTACTTATAAAATAGGTCA
63 TAGGTAAATTTAAAATGTAACCGGTATAAATATATCGTTTTA-TGAGAAAATAGGTCA
276947 ATATAAGCGC
Statistics
Matches: 439, Mismatches: 60, Indels: 38
0.82 0.11 0.07
Matches are distributed among these distances:
196 6 0.01
197 13 0.03
198 93 0.21
199 244 0.56
200 74 0.17
201 9 0.02
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.31
Consensus pattern (197 bp):
GTGTCGATACATTATTAAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAATAG
GTAAATTTAAAATGTAACCGGTATAAATATATCGTTTTATGAGAAAATAGGTCATCATAATGTAT
CGACACTTATTAAATTTGTGTTGATACTTATTGTCCAAATGAATGCCAAACGAGGTGCACGCATA
AA
Found at i:277043 original size:87 final size:87
Alignment explanation
Indices: 276947--277109 Score: 308
Period size: 87 Copynumber: 1.9 Consensus size: 87
276937 AAATAGGTCA
*
276947 ATATAAGCGCTACCTATTACATTATATAAACGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAACGCTACCTAATATGTTATTGTACTTAATAATATTT
277012 CCGGTTAAATGCTTATTTTATT
66 CCGGTTAAATGCTTATTTTATT
277034 ATATAAGCGCTACCTATTACATTATATAAACGCTACCTAATATGTTATTGTACTTAATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAACGCTACCTAATATGTTATTGTACTTAATAATATTT
*
277099 TCGGTTAAATG
66 CCGGTTAAATG
277110 ATAACATAAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
87 74 1.00
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.41
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTACATTATATAAACGCTACCTAATATGTTATTGTACTTAATAATATTT
CCGGTTAAATGCTTATTTTATT
Found at i:277081 original size:23 final size:23
Alignment explanation
Indices: 277031--277075 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
277021 TGCTTATTTT
* *
277031 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAACGCTACCTAATAC
277054 ATTATATAAACGCTACCTAATA
1 ATTATATAAACGCTACCTAATA
277076 TGTTATTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (23 bp):
ATTATATAAACGCTACCTAATAC
Found at i:289056 original size:23 final size:22
Alignment explanation
Indices: 288992--289056 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 22
288982 TGCAATTTTC
288992 AAAAAATAAAATAAA-ACAAAATA
1 AAAAAAT-AAATAAATA-AAAATA
* **
289015 AAAAATAAAAATAGGTAAAAATA
1 AAAAA-ATAAATAAATAAAAATA
289038 ATAAAAATAAATAAATAAA
1 A-AAAAATAAATAAATAAA
289057 TGTAAAGCGA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
23 27 0.82
24 6 0.18
ACGTcount: A:0.78, C:0.02, G:0.03, T:0.17
Consensus pattern (22 bp):
AAAAAATAAATAAATAAAAATA
Found at i:290811 original size:3 final size:3
Alignment explanation
Indices: 290798--290830 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
290788 TAAATTTGGT
290798 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TA
290831 TTTTTGTAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:291324 original size:131 final size:131
Alignment explanation
Indices: 291021--291369 Score: 373
Period size: 131 Copynumber: 2.6 Consensus size: 131
291011 GGTCGTCTAA
* * *
291021 GGGTGATACAACTCCTACATGATGAGGAGGTCTGGTCGGTAGATGACACAGTTCCTACGTGATAA
1 GGGTGACACAGCTCCTACATGATGAGGAGGTCTGGTCGGTAGATGACACAGTTCCTA-GCGATAA
* * * * *
291086 GGACGGCAATCCATCTTTAAGAAGGGTGATAACACGATTCCTACGCGATGAGAACGACTGGTTAT
65 GGACGACAAACCATATTTAGGAA--GTGATAACACAATTCCTACGCGATGAGAACGACTGGTTAT
*
291151 CTAC
128 ATAC
* * * * *
291155 GGGTGACACGGCTCTTACATGATGAGAAGCTCTGGTCGGTAGATGACACGGTTCCTATGCGATAA
1 GGGTGACACAGCTCCTACATGATGAGGAGGTCTGGTCGGTAGATGACACAGTTCCTA-GCGATAA
* * * *
291220 GGACGACAAACCATATTTAGGAA-TGATAACACAATTTCTAC-CTGTTGAGGATGACTGGTTATA
65 GGACGACAAACCATATTTAGGAAGTGATAACACAATTCCTACGC-GATGAGAACGACTGGTTATA
291283 TGA-
129 T-AC
* * * * ** *
291286 GGTTGACACAGCTCCTACGTGATGAGGAGGTCTAGTCGGTGGATGGTACAGTTCCTA-CGATGAG
1 GGGTGACACAGCTCCTACATGATGAGGAGGTCTGGTCGGTAGATGACACAGTTCCTAGCGATAAG
* *
291350 GATGACAGACCATATTTAGG
66 GACGACAAACCATATTTAGG
291370 GATTTTTTTC
Statistics
Matches: 180, Mismatches: 33, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
129 24 0.13
130 1 0.01
131 79 0.44
132 1 0.01
134 75 0.42
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (131 bp):
GGGTGACACAGCTCCTACATGATGAGGAGGTCTGGTCGGTAGATGACACAGTTCCTAGCGATAAG
GACGACAAACCATATTTAGGAAGTGATAACACAATTCCTACGCGATGAGAACGACTGGTTATATA
C
Found at i:291485 original size:66 final size:65
Alignment explanation
Indices: 291380--291595 Score: 267
Period size: 66 Copynumber: 3.3 Consensus size: 65
291370 GATTTTTTTC
* *
291380 AAGGGAAACAGA-CTCAAAGAT-GATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTCAG
1 AAGGGAAACA-ATCTCAAAGATGGGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACTT--G
291442 TTT
63 TTT
** * *
291445 AAGGGAAATGATCTCACAGATGGGTGTTTCAAGAAAAACTGTCTCAAGGGAGACAAAACTTGTTG
1 AAGGGAAACAATCTCAAAGATGGGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACTTGTT-
291510 T
65 T
* * * * *
291511 AAGGGAAACAATCTCAAAGTTTGGTGTTTCACGAGAAACTATCTCGAGGGAGACAAAACTTGTTT
1 AAGGGAAACAATCTCAAAGATGGGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACTTGTTT
291576 CAAGGGAAACAATCTCAAAG
1 -AAGGGAAACAATCTCAAAG
291596 GGTTTTTTCA
Statistics
Matches: 131, Mismatches: 15, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
64 1 0.01
65 20 0.15
66 108 0.82
67 2 0.02
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (65 bp):
AAGGGAAACAATCTCAAAGATGGGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAACTTGTTT
Found at i:310790 original size:22 final size:19
Alignment explanation
Indices: 310759--310814 Score: 58
Period size: 22 Copynumber: 2.7 Consensus size: 19
310749 CTGGTCACCC
*
310759 AGGTACCGATACATCTCTTA
1 AGGTATCGATACAT-TCTTA
310779 CTAGGTATCGATACAATTCTTA
1 --AGGTATCGATAC-ATTCTTA
310801 ACGGTATCGATACA
1 A-GGTATCGATACA
310815 CCTTGAATGC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 2 0.06
21 11 0.35
22 16 0.52
23 2 0.06
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.30
Consensus pattern (19 bp):
AGGTATCGATACATTCTTA
Found at i:312800 original size:16 final size:17
Alignment explanation
Indices: 312769--312801 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
312759 GTATTTGAAA
*
312769 ATTTGGATTTTTTGGAT
1 ATTTGGATTGTTTGGAT
312786 ATTTGG-TTGTTTGGAT
1 ATTTGGATTGTTTGGAT
312802 TGTTTATGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.15, C:0.00, G:0.27, T:0.58
Consensus pattern (17 bp):
ATTTGGATTGTTTGGAT
Found at i:316797 original size:22 final size:22
Alignment explanation
Indices: 316755--316797 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
316745 AAGGAAATGT
* *
316755 CTTCAGAAGATCTAATTATTGA
1 CTTCAGAAGATCAAATCATTGA
316777 CTTCAGAA-AGTCAAATCATTG
1 CTTCAGAAGA-TCAAATCATTG
316798 TTTCTTAGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (22 bp):
CTTCAGAAGATCAAATCATTGA
Found at i:324211 original size:3 final size:3
Alignment explanation
Indices: 324198--324239 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
324188 TAAATTTGGT
324198 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
324240 TTTTTGTAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:329833 original size:27 final size:26
Alignment explanation
Indices: 329798--329918 Score: 97
Period size: 27 Copynumber: 4.6 Consensus size: 26
329788 AAGGGGCAAC
329798 ATTTTTCAAAATTCTTTCATCAAACA
1 ATTTTTCAAAATTCTTTCATCAAACA
* * *
329824 ATTTTTTCAAACTTC-TCCATTAAAC-
1 A-TTTTTCAAAATTCTTTCATCAAACA
** *
329849 ATTTTTCAAAAAACTCTTGATCAAACA
1 ATTTTTCAAAATTCT-TTCATCAAACA
* *
329876 TTTTTTTCAAAACTTCTTT-ATCAAA-T
1 -ATTTTTCAAAA-TTCTTTCATCAAACA
329902 ATTTTTCAAAACTTCTT
1 ATTTTTCAAAA-TTCTT
329919 CATTCTACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 13
0.74 0.14 0.13
Matches are distributed among these distances:
24 10 0.13
25 17 0.23
26 16 0.21
27 18 0.24
28 12 0.16
29 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.01, T:0.45
Consensus pattern (26 bp):
ATTTTTCAAAATTCTTTCATCAAACA
Found at i:329852 original size:25 final size:25
Alignment explanation
Indices: 329795--329919 Score: 94
Period size: 26 Copynumber: 4.8 Consensus size: 25
329785 AGTAAGGGGC
*
329795 AACATTTTTCAAAATTCTTTCATCA
1 AACATTTTTCAAAATTCTTCCATCA
* *
329820 AACAATTTTTTCAAACTTC-TCCATTA
1 AAC-A-TTTTTCAAAATTCTTCCATCA
* *
329846 AACATTTTTCAAAAAACTCTT-GATCA
1 AACATTTTTC--AAAATTCTTCCATCA
*
329872 AACATTTTTTTCAAAACTTCTT-TATCA
1 AACA--TTTTTCAAAA-TTCTTCCATCA
*
329899 AATATTTTTCAAAACTTCTTC
1 AACATTTTTCAAAA-TTCTTC
329920 ATTCTACTTT
Statistics
Matches: 81, Mismatches: 10, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
24 6 0.07
25 20 0.25
26 25 0.31
27 24 0.30
28 6 0.07
ACGTcount: A:0.36, C:0.20, G:0.01, T:0.43
Consensus pattern (25 bp):
AACATTTTTCAAAATTCTTCCATCA
Found at i:329906 original size:53 final size:51
Alignment explanation
Indices: 329795--329912 Score: 146
Period size: 53 Copynumber: 2.3 Consensus size: 51
329785 AGTAAGGGGC
** *
329795 AACATTTTTCAAAATTCTTTCATCAAACAATTTTTTCAAACTTCTCCATTA
1 AACATTTTTCAAAAAACTTTCATCAAACAATTTTTTCAAACTTCTCCATCA
* * **
329846 AACATTTTTCAAAAAACTCTTGATCAAACATTTTTTTCAAAACTTCTTTATCA
1 AACATTTTTCAAAAAACT-TTCATCAAACAATTTTTTC-AAACTTCTCCATCA
*
329899 AATATTTTTCAAAA
1 AACATTTTTCAAAA
329913 CTTCTTCATT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
51 16 0.28
52 17 0.30
53 24 0.42
ACGTcount: A:0.38, C:0.19, G:0.01, T:0.42
Consensus pattern (51 bp):
AACATTTTTCAAAAAACTTTCATCAAACAATTTTTTCAAACTTCTCCATCA
Found at i:331416 original size:25 final size:25
Alignment explanation
Indices: 331382--331432 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
331372 TAGGACTTGC
*
331382 TTAAAGTTTCGTTCGCTTGAAAGTG
1 TTAAAATTTCGTTCGCTTGAAAGTG
331407 TTAAAATTTCGTTCGCTTGAAAGTG
1 TTAAAATTTCGTTCGCTTGAAAGTG
331432 T
1 T
331433 AACTTTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (25 bp):
TTAAAATTTCGTTCGCTTGAAAGTG
Found at i:331698 original size:14 final size:14
Alignment explanation
Indices: 331681--331713 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
331671 TTAATATTTT
*
331681 TTATTATATATTAA
1 TTATTAAATATTAA
331695 TTATTAAATATTAA
1 TTATTAAATATTAA
331709 -TATTA
1 TTATTA
331714 CTTTTTTGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTATTAAATATTAA
Found at i:333045 original size:73 final size:71
Alignment explanation
Indices: 332956--333097 Score: 196
Period size: 70 Copynumber: 2.0 Consensus size: 71
332946 TATTACTAGG
*
332956 ATTTTATGTACATATATTATATTAAAAAGATTTTTTTATTTAATATCTATTAGGTATAAATATAT
1 ATTTTATGTACATATATTATATTAAAAAGA--TTTTTATTTAAT-TCTATTAGATATAAATATAT
333021 ATATATAGT
63 ATATATAGT
* * * * *
333030 ATTTT-TGTACATATATTATATTAAAAGGATTTTTATTTTATTTTATTATATATATATATATATA
1 ATTTTATGTACATATATTATATTAAAAAGATTTTTATTTAATTCTATTAGATATAAATATATATA
333094 TATA
66 TATA
333098 TATATATTTC
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
70 23 0.37
71 11 0.18
73 23 0.37
74 5 0.08
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (71 bp):
ATTTTATGTACATATATTATATTAAAAAGATTTTTATTTAATTCTATTAGATATAAATATATATA
TATAGT
Found at i:333083 original size:2 final size:2
Alignment explanation
Indices: 333076--333104 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
333066 TTTATTTTAT
333076 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
333105 TTCAATTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:333106 original size:73 final size:73
Alignment explanation
Indices: 332956--333097 Score: 200
Period size: 73 Copynumber: 2.0 Consensus size: 73
332946 TATTACTAGG
*
332956 ATTTTATGTACATATATTATATTAAAAAGATTTTTTTATTTAATATCTATTAGGTATAAATATAT
1 ATTTTATGTACATATATTATATTAAAAAGATTTTTTTATTT-ATATCTATTAGATATAAATATAT
333021 ATATATAGT
65 ATATATAGT
* * * * *
333030 ATTTT-TGTACATATATTATATTAAAAGGATTTTTAT-TTTAT-TTTATTATATATATATATATA
1 ATTTTATGTACATATATTATATTAAAAAGATTTTTTTATTTATATCTATTAGATATAAATATATA
333092 TATATA
66 TATATA
333098 TATATATTTC
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
70 23 0.37
71 2 0.03
72 3 0.05
73 29 0.47
74 5 0.08
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (73 bp):
ATTTTATGTACATATATTATATTAAAAAGATTTTTTTATTTATATCTATTAGATATAAATATATA
TATATAGT
Found at i:334644 original size:17 final size:17
Alignment explanation
Indices: 334592--334646 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
334582 CCTCCTCGTT
334592 TTTTATGATCAATTATA
1 TTTTATGATCAATTATA
* * *
334609 -TTTAT-CTCACTTATT
1 TTTTATGATCAATTATA
*
334624 TTTTATGATTAATTATA
1 TTTTATGATCAATTATA
334641 TTTTAT
1 TTTTAT
334647 CCTATTTAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
15 7 0.24
16 10 0.34
17 12 0.41
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.60
Consensus pattern (17 bp):
TTTTATGATCAATTATA
Found at i:337096 original size:108 final size:108
Alignment explanation
Indices: 336975--337188 Score: 428
Period size: 108 Copynumber: 2.0 Consensus size: 108
336965 GACCCCATCT
336975 TTTGAAGAAAAAAAAAAGACAGCAACTTTATCTCAAAGAGTTTTTTTGTTCTATATTTTGGAAAA
1 TTTGAAGAAAAAAAAAAGACAGCAACTTTATCTCAAAGAGTTTTTTTGTTCTATATTTTGGAAAA
337040 TGGGGTTTTTATATGTTTATGCCTGAAGAATATGTAGCAGATC
66 TGGGGTTTTTATATGTTTATGCCTGAAGAATATGTAGCAGATC
337083 TTTGAAGAAAAAAAAAAGACAGCAACTTTATCTCAAAGAGTTTTTTTGTTCTATATTTTGGAAAA
1 TTTGAAGAAAAAAAAAAGACAGCAACTTTATCTCAAAGAGTTTTTTTGTTCTATATTTTGGAAAA
337148 TGGGGTTTTTATATGTTTATGCCTGAAGAATATGTAGCAGA
66 TGGGGTTTTTATATGTTTATGCCTGAAGAATATGTAGCAGA
337189 GATCCAAATA
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 106 1.00
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.37
Consensus pattern (108 bp):
TTTGAAGAAAAAAAAAAGACAGCAACTTTATCTCAAAGAGTTTTTTTGTTCTATATTTTGGAAAA
TGGGGTTTTTATATGTTTATGCCTGAAGAATATGTAGCAGATC
Found at i:353675 original size:16 final size:17
Alignment explanation
Indices: 353647--353682 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
353637 CGTATCGCCG
353647 ACAAAATTTTACTATTC
1 ACAAAATTTTACTATTC
353664 ACAAAA-TTTACTATTC
1 ACAAAATTTTACTATTC
353680 ACA
1 ACA
353683 TGAATAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.36
Consensus pattern (17 bp):
ACAAAATTTTACTATTC
Found at i:358270 original size:21 final size:20
Alignment explanation
Indices: 358244--358292 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
358234 ACCGTTAAGA
*
358244 TGTTGATGTGGCAGTCTACGG
1 TGTTGATGT-GAAGTCTACGG
* *
358265 TGTTGACGTGAAGTCTATGG
1 TGTTGATGTGAAGTCTACGG
358285 TGGTTGAT
1 T-GTTGAT
358293 AACGTGTCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.16, C:0.10, G:0.37, T:0.37
Consensus pattern (20 bp):
TGTTGATGTGAAGTCTACGG
Found at i:358922 original size:22 final size:23
Alignment explanation
Indices: 358897--358940 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
358887 ATGTAAAATC
358897 TAATAAATTAATA-TTTATTAAT
1 TAATAAATTAATACTTTATTAAT
*
358919 TAATAATTTAATAGCTTTATTA
1 TAATAAATTAATA-CTTTATTA
358941 TTATTTGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
24 7 0.37
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (23 bp):
TAATAAATTAATACTTTATTAAT
Found at i:362983 original size:24 final size:24
Alignment explanation
Indices: 362951--362999 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
362941 AGTCTTCCTG
362951 ATGATGTATAAAACATCTATGTAC
1 ATGATGTATAAAACATCTATGTAC
362975 ATGATGTATAAAACATCTATGTAC
1 ATGATGTATAAAACATCTATGTAC
362999 A
1 A
363000 ATGTCATGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (24 bp):
ATGATGTATAAAACATCTATGTAC
Found at i:364746 original size:29 final size:29
Alignment explanation
Indices: 364665--364753 Score: 81
Period size: 29 Copynumber: 3.0 Consensus size: 29
364655 TAAAATATAT
* * *
364665 AACTTTTAAAACTTACAATTTCAGTCCCTA
1 AACTTTCAAAACTTAC-ATTTTAGTCACTA
** * *
364695 AACTTTTCAAAGTTTATACTTTAG-CTACTA
1 AAC-TTTCAAAACTTACATTTTAGTC-ACTA
364725 AACTTTCAAAACTTACATTTTAGTCACTA
1 AACTTTCAAAACTTACATTTTAGTCACTA
364754 GACAAAATTT
Statistics
Matches: 45, Mismatches: 11, Indels: 7
0.71 0.17 0.11
Matches are distributed among these distances:
29 21 0.47
30 15 0.33
31 9 0.20
ACGTcount: A:0.36, C:0.20, G:0.04, T:0.39
Consensus pattern (29 bp):
AACTTTCAAAACTTACATTTTAGTCACTA
Found at i:368537 original size:166 final size:167
Alignment explanation
Indices: 368263--368595 Score: 643
Period size: 166 Copynumber: 2.0 Consensus size: 167
368253 TTCTTTCCAC
368263 AATACTCACATTCTGGTTTCTGACGAGATCCTGAACCTTTAGTATCTGCTGAAGCTGTCTGTGTC
1 AATACTCACATTCTGGTTTCTGACGAGATCCTGAACCTTTAGTATCTGCTGAAGCTGTCTGTGTC
368328 TACTTGGACTTTCCTCCAGAAAATCCCTTTTTATGGGAAGATGCTGAGGATACATAAA-TTT-TG
66 TACTTGGACTTTCCTCCAGAAAATCCCTTTTTATGGGAAGATGCTGAGGATACATAAATTTTCTG
368391 TTGTTGGACCCTTGCTGCATTTGGAAAATGGTACAGAG
131 TTGTT-GACCCTTGCTGCATTTGGAAAATGGTACAGAG
368429 AATACTCACATTCTGGTTTCTGACGAGATCCTGAACCTTTAGTATCTGCTGAAGCTGTCTGTGTC
1 AATACTCACATTCTGGTTTCTGACGAGATCCTGAACCTTTAGTATCTGCTGAAGCTGTCTGTGTC
368494 TACTTGGACTTTCCTCCAGAAAATCCCTTTTTATGGGAAGATGCTGAGGATACATAAATTTTCTG
66 TACTTGGACTTTCCTCCAGAAAATCCCTTTTTATGGGAAGATGCTGAGGATACATAAATTTTCTG
368559 TTGTTGACCCTTGCTGCATTTGGAAAATGGTACAGAG
131 TTGTTGACCCTTGCTGCATTTGGAAAATGGTACAGAG
368596 TATGAACTTC
Statistics
Matches: 165, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
166 123 0.75
167 35 0.21
168 7 0.04
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.35
Consensus pattern (167 bp):
AATACTCACATTCTGGTTTCTGACGAGATCCTGAACCTTTAGTATCTGCTGAAGCTGTCTGTGTC
TACTTGGACTTTCCTCCAGAAAATCCCTTTTTATGGGAAGATGCTGAGGATACATAAATTTTCTG
TTGTTGACCCTTGCTGCATTTGGAAAATGGTACAGAG
Found at i:370493 original size:24 final size:24
Alignment explanation
Indices: 370461--370509 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
370451 AGTCTTCCTA
370461 ATGATGTATAAAACATCTATATAC
1 ATGATGTATAAAACATCTATATAC
*
370485 ATGATGTATAAAACATCTATGTAC
1 ATGATGTATAAAACATCTATATAC
370509 A
1 A
370510 ATGTCATGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (24 bp):
ATGATGTATAAAACATCTATATAC
Found at i:372266 original size:29 final size:29
Alignment explanation
Indices: 372187--372275 Score: 81
Period size: 29 Copynumber: 3.0 Consensus size: 29
372177 TAGAATATAT
* * *
372187 AACTTTTAAAACTTACAATTTTTGTCC-CTA
1 AACTTTCAAAACTTAC-ACTTTAG-CCACTA
** *
372217 AACTTTTCAAAGTTTATACTTTAGCCACTA
1 AAC-TTTCAAAACTTACACTTTAGCCACTA
*
372247 AACTTTCAAAACTTACACTTTAGTCACTA
1 AACTTTCAAAACTTACACTTTAGCCACTA
372276 GACAAAATTT
Statistics
Matches: 47, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
29 24 0.51
30 14 0.30
31 9 0.19
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.39
Consensus pattern (29 bp):
AACTTTCAAAACTTACACTTTAGCCACTA
Found at i:381919 original size:2 final size:2
Alignment explanation
Indices: 381912--381968 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
381902 GATATCAATC
381912 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
381954 TA TA TA TG TA TA TA T
1 TA TA TA TA TA TA TA T
381969 GGGTAAACTA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:382150 original size:10 final size:10
Alignment explanation
Indices: 382135--382184 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
382125 AAAAACATTT
382135 TATTATATTA
1 TATTATATTA
382145 TATTATATT-
1 TATTATATTA
382154 TATT-TATTA
1 TATTATATTA
382163 TTATTATTATT-
1 -TATTA-TATTA
*
382174 TATTTTATTA
1 TATTATATTA
382184 T
1 T
382185 TTTTGTAGGC
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
8 4 0.12
9 8 0.24
10 18 0.53
12 4 0.12
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TATTATATTA
Found at i:382164 original size:16 final size:16
Alignment explanation
Indices: 382145--382186 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
382135 TATTATATTA
382145 TATTATATTTATTTAT
1 TATTATATTTATTTAT
382161 TATTAT-TATTATTTAT
1 TATTATAT-TTATTTAT
382177 T-TTATTATTT
1 TATTA-TATTT
382187 TTGTAGGCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 4 0.17
16 18 0.78
17 1 0.04
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TATTATATTTATTTAT
Found at i:394210 original size:17 final size:17
Alignment explanation
Indices: 394177--394210 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
394167 TTGAATATTT
* *
394177 TGGATTGTTTGATTTTG
1 TGGATTGTTAGACTTTG
394194 TGGATTGTTAGACTTTG
1 TGGATTGTTAGACTTTG
394211 GATTTGTTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.03, G:0.29, T:0.53
Consensus pattern (17 bp):
TGGATTGTTAGACTTTG
Found at i:394916 original size:19 final size:19
Alignment explanation
Indices: 394889--394925 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
394879 GTATGCTCGG
394889 AGGGAACCGATTCCCCCCA
1 AGGGAACCGATTCCCCCCA
*
394908 AGGGTACCGATTCCCCCC
1 AGGGAACCGATTCCCCCC
394926 TGTGTAACGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.43, G:0.22, T:0.14
Consensus pattern (19 bp):
AGGGAACCGATTCCCCCCA
Found at i:396521 original size:84 final size:83
Alignment explanation
Indices: 396294--397157 Score: 712
Period size: 84 Copynumber: 10.4 Consensus size: 83
396284 AATTTTTTCT
* *
396294 ATTTGCAGCATAACTCAAGGCTAGAAGTGTTATCTGCTAACCAAAGACCTTCGAGTTCGACTACG
1 ATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTGC-AACCAAAGACCTTCGAGTTCGACTACG
* * *
396359 CTTAACTCCAAGGTACATC
65 CTCAGCTCCAAGGCACATC
* * * * * *
396378 ATTTGCAACAT-ACTTAAGTCGAGAAGGGTTATCTG---CCAAAAACCTTCAAATTCGACTACGC
1 ATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTGCAACCAAAGACCTTCGAGTTCGACTACGC
* * *
396439 TCAGCTTCGAGGGAACATC
66 TCAGC-TCCAAGGCACATC
* ** **
396458 ATTTACAACATAACTCAAGGCTAGAAGGGTTA-CATGTTAGTAAAGACCTTCGAGTTCGACTACG
1 ATTTGCAACATAACTCAAGGCTAGAAGGGTTATC-TGCAACCAAAGACCTTCGAGTTCGACTACG
* *
396522 TTCAGCTCCAAGGCACGTC
65 CTCAGCTCCAAGGCACATC
* * * *
396541 ATTTGCAGCATAGCTCAAGGCTAGAAGGGTTATCTGCCACC-AAGACCTTCGAGTTCAACTACGC
1 ATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTGCAACCAAAGACCTTCGAGTTCGACTACGC
**
396605 TCAGCTCCAAGGCGTATC
66 TCAGCTCCAAGGCACATC
* * * * * *
396623 ATGTGCAACATAACTTAAGTCAAAAAGGGTTATCTGCCAACCAAATACCTTCGAGTTCGACTACG
1 ATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTG-CAACCAAAGACCTTCGAGTTCGACTACG
* *
396688 TTCAGCTCCAAGGCACATT
65 CTCAGCTCCAAGGCACATC
* ** * * * * ** * * * * *
396707 ATTTACAGTATAGCTTAAGTCGAGAAGGGAAATTTG---CCAAAGACCCTCGAGTTCTATTACAC
1 ATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTGCAACCAAAGACCTTCGAGTTCGACTACGC
* * *
396769 TCAGCTTCGAGGGTACATC
66 TCAGC-TCCAAGGCACATC
* * * ** * * *
396788 ATTTACAGCATAACTCAAGGCTAGAAAGGTTATCTGTGACCAAAATACATTCTAGTTCGACTACG
1 ATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTGCAACC-AAAGACCTTCGAGTTCGACTACG
*
396853 CTCAGCTCCAAGGCATATC
65 CTCAGCTCCAAGGCACATC
* * * * * *
396872 ATTTGTAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACCACA
1 ATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTG-CAACCAAAGACCTTCGAGTTCGACTACG
*
396937 CTCAGCTCCAAGACACATC
65 CTCAGCTCCAAGGCACATC
* * * * * * * *
396956 ATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTG---CCAAAGACCCTCGAGTTTGATTACAG
1 ATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTGCAACCAAAGACCTTCGAGTTCGACTAC-G
** *
397018 -TCAGCTTTGAGGGCACATC
65 CTCAGC-TCCAAGGCACATC
* * * * * * *
397037 ATTTACATCATAACTCAAGGCTAGAAGGGTTATCTATCAA-CAAATACCTTCGAGTTTGACTCCA
1 ATTTGCAACATAACTCAAGGCTAGAAGGGTTATCT-GCAACCAAAGACCTTCGAGTTCGACTACG
*
397101 CTCAGCTCAAAGGCACCATC
65 CTCAGCTCCAAGGCA-CATC
* * * *
397121 ATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGC
1 ATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTGC
397158 CAAAGACTTT
Statistics
Matches: 615, Mismatches: 142, Indels: 47
0.76 0.18 0.06
Matches are distributed among these distances:
79 26 0.04
80 71 0.12
81 93 0.15
82 65 0.11
83 72 0.12
84 263 0.43
85 25 0.04
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (83 bp):
ATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTGCAACCAAAGACCTTCGAGTTCGACTACGC
TCAGCTCCAAGGCACATC
Found at i:396867 original size:165 final size:165
Alignment explanation
Indices: 396302--396943 Score: 679
Period size: 165 Copynumber: 3.9 Consensus size: 165
396292 CTATTTGCAG
* *
396302 CATAACTCAAGGCTAG-AAGTGTTATCTGCTAACCAAAGACCTTCGAGTTCGACTACGCTTAACT
1 CATAACTCAAGGCTAGAAAG-GTTATCTGCTAACCAAAGACCTTCGAGTTCGACTACGCTCAGCT
* * * *
396366 CCAAGGTACATCATTTGCAACATA-CTTAAGTCGAGAAGGGTTATCTGCCAAAAACCTTCAAATT
65 CCAAGGCACATCATTTGCAACATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCTTCGAGTT
* *
396430 CGACTACGCTCAGCTTCGAGGGAACATCATTTACAA
130 CAACTACGCTCAGCTTCGAGGGTACATCATTTACAA
* * ** *
396466 CATAACTCAAGGCTAGAAGGGTTA-CATG-TTAGTAAAGACCTTCGAGTTCGACTACGTTCAGCT
1 CATAACTCAAGGCTAGAAAGGTTATC-TGCTAACCAAAGACCTTCGAGTTCGACTACGCTCAGCT
* * * * *
396529 CCAAGGCACGTCATTTGCAGCATAGCTCAAGGCTAGAAGGGTTATCTGCCACCAAGACCTTCGAG
65 CCAAGGCACATCATTTGCAACATAGCTTAAGTCGAGAAGGGTTATCTGCCA--AAGACCTTCGAG
* * * *
396594 TTCAACTACGCTCAGCTCCAAGGCGT--ATCATGTGCAA
128 TTCAACTACGCTCAGCTTCGAGG-GTACATCATTTACAA
* * * * * *
396631 CATAACTTAAGTC-AAAAAGGGTTATCTGCCAACCAAATACCTTCGAGTTCGACTACGTTCAGCT
1 CATAACTCAAGGCTAGAAA-GGTTATCTGCTAACCAAAGACCTTCGAGTTCGACTACGCTCAGCT
* * ** ** * *
396695 CCAAGGCACATTATTTACAGTATAGCTTAAGTCGAGAAGGGAAATTTGCCAAAGACCCTCGAGTT
65 CCAAGGCACATCATTTGCAACATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCTTCGAGTT
* * * *
396760 CTATTACACTCAGCTTCGAGGGTACATCATTTACAG
130 CAACTACGCTCAGCTTCGAGGGTACATCATTTACAA
* * * *
396796 CATAACTCAAGGCTAGAAAGGTTATCTG-TGACCAAAATACATTCTAGTTCGACTACGCTCAGCT
1 CATAACTCAAGGCTAGAAAGGTTATCTGCTAACC-AAAGACCTTCGAGTTCGACTACGCTCAGCT
* * *
396860 CCAAGGCATATCATTTGTAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTCG
65 CCAAGGCACATCATTTGCAACATAGCTTAAGTCGAGAAGGGTTATCTG----CCAAAGACCTTCG
* * *
396925 AGTTCGACCACACTCAGCT
126 AGTTCAACTACGCTCAGCT
396944 CCAAGACACA
Statistics
Matches: 389, Mismatches: 72, Indels: 29
0.79 0.15 0.06
Matches are distributed among these distances:
163 53 0.14
164 80 0.21
165 122 0.31
166 105 0.27
167 1 0.00
169 28 0.07
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (165 bp):
CATAACTCAAGGCTAGAAAGGTTATCTGCTAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTC
CAAGGCACATCATTTGCAACATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCTTCGAGTTC
AACTACGCTCAGCTTCGAGGGTACATCATTTACAA
Found at i:396884 original size:249 final size:247
Alignment explanation
Indices: 396294--397160 Score: 942
Period size: 249 Copynumber: 3.5 Consensus size: 247
396284 AATTTTTTCT
* *
396294 ATTTGCAGCATAACTCAAGGCTAG-AAGTGTTATCTGCTAACCAAAGACCTTCGAGTTCGACTAC
1 ATTTACAGCATAACTCAAGGCTAGAAAG-GTTATCTG-TCACCAAAGACCTTCGAGTTCGACTAC
* * * *
396358 GCTTAACTCCAAGGTACATCATTTGCAACAT-ACTTAAGTCGAGAAGGGTTATCTGCC-A--AAA
64 GCTCAGCTCCAAGGCACATCATTTGCAACATAACTTAAGTCAAGAAGGGTTATCTGCCAACCAAA
* * * * * * * * *
396419 ACCTTCAAATTCGACTACGCTCAGCTTCGAGGGAACATCATTTACAACATAACTCAAGGCTAGAA
129 ACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTACAGCATAACTTAAGTCGAGAA
* * * * * ** * * *
396484 GGGTTACATGTTAG-TAAAGACCTTCGAGTTCGACTACGTTCAGC-TCCAAGGCACGTC
193 GGG--AAAT-TT-GCCAAAGACCCTCGAGTTCTATTACACTCAGCTTCGAGGGCACATC
* * * * *
396541 ATTTGCAGCATAGCTCAAGGCTAGAAGGGTTATCTGCCACC-AAGACCTTCGAGTTCAACTACGC
1 ATTTACAGCATAACTCAAGGCTAGAAAGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGC
** * *
396605 TCAGCTCCAAGGCGTATCATGTGCAACATAACTTAAGTCAAAAAGGGTTATCTGCCAACCAAATA
66 TCAGCTCCAAGGCACATCATTTGCAACATAACTTAAGTCAAGAAGGGTTATCTGCCAACCAAA-A
* * * *
396670 CCTTCGAGTTCGACTACGTTCAGCTCCAAGGCACATTATTTACAGTATAGCTTAAGTCGAGAAGG
130 CCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAACTTAAGTCGAGAAGG
*
396735 GAAATTTGCCAAAGACCCTCGAGTTCTATTACACTCAGCTTCGAGGGTACATC
195 GAAATTTGCCAAAGACCCTCGAGTTCTATTACACTCAGCTTCGAGGGCACATC
* * * *
396788 ATTTACAGCATAACTCAAGGCTAGAAAGGTTATCTGTGACCAAAATACATTCTAGTTCGACTACG
1 ATTTACAGCATAACTCAAGGCTAGAAAGGTTATCTGTCACC-AAAGACCTTCGAGTTCGACTACG
* * *
396853 CTCAGCTCCAAGGCATATCATTTGTAACATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAG
65 CTCAGCTCCAAGGCACATCATTTGCAACATAACTTAAGTCAAGAAGGGTTATCTGCCAACCAAA-
* * * *
396918 ACCTTCGAGTTCGACCACACTCAGCTCCAAGACACATCATTTGCAGCATAACTTAAGTCGAGAAG
129 ACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAACTTAAGTCGAGAAG
** * * *
396983 GGCTATCTGCCAAAGACCCTCGAGTT-TGATTACAGTCAGCTTTGAGGGCACATC
194 GGAAATTTGCCAAAGACCCTCGAGTTCT-ATTACACTCAGCTTCGAGGGCACATC
* * * * * * * *
397037 ATTTACATCATAACTCAAGGCTAGAAGGGTTATCTATCAACAAATACCTTCGAGTTTGACTCCAC
1 ATTTACAGCATAACTCAAGGCTAGAAAGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGC
* * * * * *
397102 TCAGCTCAAAGGCACCATCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAA
66 TCAGCTCCAAGGCA-CATCATTTGCAACATAACTTAAGTCAAGAAGGGTTATCTGCCAA
397161 AGACTTTGGA
Statistics
Matches: 523, Mismatches: 85, Indels: 22
0.83 0.13 0.03
Matches are distributed among these distances:
245 46 0.09
246 53 0.10
247 80 0.15
248 35 0.07
249 287 0.55
250 22 0.04
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (247 bp):
ATTTACAGCATAACTCAAGGCTAGAAAGGTTATCTGTCACCAAAGACCTTCGAGTTCGACTACGC
TCAGCTCCAAGGCACATCATTTGCAACATAACTTAAGTCAAGAAGGGTTATCTGCCAACCAAAAC
CTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAACTTAAGTCGAGAAGGG
AAATTTGCCAAAGACCCTCGAGTTCTATTACACTCAGCTTCGAGGGCACATC
Found at i:397539 original size:10 final size:10
Alignment explanation
Indices: 397524--397579 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
397514 AAAAACATTT
397524 TATTATATTA
1 TATTATATTA
397534 TATTATATT-
1 TATTATATTA
397543 TATT-TATTA
1 TATTATATTA
397552 TTATTATTATTA
1 -TATTA-TATTA
* * *
397564 TTTTTTATTT
1 TATTATATTA
397574 TATTAT
1 TATTAT
397580 TTTTGTAGGT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
8 4 0.11
9 4 0.11
10 21 0.57
11 3 0.08
12 5 0.14
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TATTATATTA
Found at i:397554 original size:3 final size:3
Alignment explanation
Indices: 397523--397580 Score: 56
Period size: 3 Copynumber: 20.7 Consensus size: 3
397513 CAAAAACATT
397523 TTA TTA -TA TTA -TA TTA -TA TTTA TTTA TTA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA
397566 TT- TTA TT- TTA TTA TT
1 TTA TTA TTA TTA TTA TT
397581 TTTGTAGGTC
Statistics
Matches: 49, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
2 12 0.24
3 31 0.63
4 6 0.12
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:397581 original size:15 final size:16
Alignment explanation
Indices: 397520--397583 Score: 62
Period size: 16 Copynumber: 3.9 Consensus size: 16
397510 CTACAAAAAC
397520 ATTTTATTATATTATATT
1 ATTTTATTATATT-T-TT
*
397538 ATATTTATT-TATTATT
1 AT-TTTATTATATTTTT
397554 ATTATTATTAT-TTTTT
1 ATT-TTATTATATTTTT
397570 ATTTTATTAT-TTTT
1 ATTTTATTATATTTT
397584 GTAGGTCCCA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
15 12 0.29
16 16 0.39
17 1 0.02
18 6 0.15
19 6 0.15
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
ATTTTATTATATTTTT
Found at i:398091 original size:4 final size:4
Alignment explanation
Indices: 398084--398145 Score: 56
Period size: 4 Copynumber: 15.0 Consensus size: 4
398074 TATATATATA
* *
398084 TATT TATT TATT TATT TATT T-TT CATT TATT TATT AATAT TATT ATATT
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TAT-T TATT -TATT
398133 AATATT T-TT TATT
1 --TATT TATT TATT
398146 ATTCTTTTCT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
3 5 0.10
4 32 0.65
5 7 0.14
6 5 0.10
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (4 bp):
TATT
Found at i:398134 original size:14 final size:13
Alignment explanation
Indices: 398087--398146 Score: 63
Period size: 14 Copynumber: 4.8 Consensus size: 13
398077 ATATATATAT
*
398087 TTATTTATTTAT-
1 TTATTTATTAATA
*
398099 TTATTT-TTCAT-
1 TTATTTATTAATA
398110 TTATTTATTAATA
1 TTATTTATTAATA
398123 TTATTATATTAATA
1 TTATT-TATTAATA
*
398137 TTTTTTATTA
1 TTATTTATTA
398147 TTCTTTTCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
11 10 0.24
12 10 0.24
13 10 0.24
14 12 0.29
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (13 bp):
TTATTTATTAATA
Found at i:399016 original size:30 final size:29
Alignment explanation
Indices: 398927--399038 Score: 161
Period size: 29 Copynumber: 3.8 Consensus size: 29
398917 TTAAATAAAC
*
398927 ATCTAAACATTAAAAATATATTTTATTCTT
1 ATCTTAAC-TTAAAAATATATTTTATTCTT
398957 ATCTTAACTTAAAAATATATTTTATTCTT
1 ATCTTAACTTAAAAATATATTTTATTCTT
*
398986 ATTTTAACTTAAAAATATATTTTAATTCTT
1 ATCTTAACTTAAAAATATATTTT-ATTCTT
* * *
399016 AACTTAACTTAAATATTTATTTT
1 ATCTTAACTTAAAAATATATTTT
399039 TTATTCTAAT
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
29 43 0.57
30 32 0.43
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (29 bp):
ATCTTAACTTAAAAATATATTTTATTCTT
Found at i:399060 original size:59 final size:58
Alignment explanation
Indices: 398936--399050 Score: 151
Period size: 59 Copynumber: 2.0 Consensus size: 58
398926 CATCTAAACA
* * **
398936 TTAAAAATATATTTTATTCTTATCTTAACTTAAAAATATATTTTATTCTTATTTTAAC
1 TTAAAAATATATTTTATTCTTAACTTAACTTAAAAATATATTTTATTATTATAATAAC
* * *
398994 TTAAAAATATATTTTAATTCTTAACTTAACTTAAATATTTATTTT-TTATTCTAATAA
1 TTAAAAATATATTTT-ATTCTTAACTTAACTTAAAAATATATTTTATTATTATAATAA
399051 TTTTTAAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
58 23 0.47
59 26 0.53
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (58 bp):
TTAAAAATATATTTTATTCTTAACTTAACTTAAAAATATATTTTATTATTATAATAAC
Found at i:410958 original size:149 final size:146
Alignment explanation
Indices: 410680--411669 Score: 1026
Period size: 149 Copynumber: 6.9 Consensus size: 146
410670 CCTAAATCAT
*
410680 TTTATTTCACCCGGCCTACTCCACACGTTA-AGGCGCTCGGCGTAAGATCAGGTCATCCTGCCTA
1 TTTATTTCACCCGGCCTACTCCACACGTTAGA-GCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
* * *
410744 CTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACCCCACACGTTGAGGCGCTC
65 CTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCT-CCCTGCCTACTCTACACGTTGAAGCGCTC
* * * *
410809 GACCTGATATTAAAGCGCA
129 GGCGTGACATT-AAGCACA
* * *
410828 TTATATTTCACCCGACCTACTCCACACGTTAGGGCGCTCGGTGTAAGACCAGGTCATCCTGCCTA
1 TT-TATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
* * * * *
410893 CTCCCCTCTAGAAGCGCTAGGCATGAACTCTGTCTACCCTGCTTACCCTACACGTTG-AGATGCT
65 CTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCT-CCCTGCCTACTCTACACGTTGAAG-CGCT
410957 CGGCGTGA-A-T-----C-
128 CGGCGTGACATTAAGCACA
** * * * *
410968 TGGGA---CACCCTGCCTACTCCATACGTTAGAGCGCTCGACGTAAGATCAGGTCATCCTGCCTA
1 T-TTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
* *
411030 CTCCCCTTTGGAAGCGCTCGGCATGCACTCTGTCTCCTCTGCCTACTCT-CAACGTTGAAGCGCT
65 CTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTCC-CTGCCTACTCTAC-ACGTTGAAGCGCT
411094 CGGCGTGACATTAAGGCACA
128 CGGCGTGACATTAA-GCACA
411114 TCTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
1 T-TTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
* * *
411179 CTTCCCTCTGGAAGCGCTCGGCATGTACTCTGTCTCCTCTGCCTACTCTAAACGTTGAAGCGCTC
65 CTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTCC-CTGCCTACTCTACACGTTGAAGCGCTC
411244 GGCGTGACATTAAGGCACA
129 GGCGTGACATTAA-GCACA
*
411263 TCTTGTTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
1 T-TTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTA
* * *
411328 CTCCCCTCTGGAAGCGCTCGGCATGTACTCTGTCCCCCCTGCCTACTCT-CAACGTTGAAGTGCT
65 CTCCCCTCTGGAAGCGCTCGGCATGAACTCTGT-CTCCCTGCCTACTCTAC-ACGTTGAAGCGCT
411392 CGGCGTG--A-T------A
128 CGGCGTGACATTAAGCACA
** * * * *
411402 -TTATAACACCCTGCCTACTCCACACGTTAGAGCGCCCGGCGTAAGATCAAGTCATCCTGCCTAC
1 TTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTAC
* * * * * *
411466 TCCCCACTGGAAGCGCTCGGCATGAACTCTATCCCCCTTCCAACTCTTA-ACGGTGAAGCGCTCG
66 TCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTCCCTGCCTACTC-TACACGTTGAAGCGCTCG
* * * *
411530 ACGTGAAAAT-AG--GA
130 GCGTGACATTAAGCACA
* * * * * * *
411544 ---A--T-ACCCTGCCTACCCCATACATTAGAGCGCCCGGCGTAAGATCAGGTCATCCGGCCTAC
1 TTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTAC
* * * * * *
411603 TCCCCACTGGAAGCGCTCGGCATGAACTCTGTCCCCCTTCCAACTCTTA-ATGTTAAAGCGCTCG
66 TCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTCCCTGCCTACTC-TACACGTTGAAGCGCTCG
411667 GCG
130 GCG
411670 AAATTCCTTA
Statistics
Matches: 742, Mismatches: 70, Indels: 71
0.84 0.08 0.08
Matches are distributed among these distances:
136 32 0.04
137 308 0.42
138 4 0.01
139 3 0.00
140 3 0.00
141 1 0.00
142 1 0.00
145 1 0.00
146 3 0.00
147 2 0.00
148 4 0.01
149 377 0.51
150 3 0.00
ACGTcount: A:0.21, C:0.34, G:0.21, T:0.24
Consensus pattern (146 bp):
TTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTAC
TCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTCCCTGCCTACTCTACACGTTGAAGCGCTCGG
CGTGACATTAAGCACA
Found at i:411085 original size:137 final size:138
Alignment explanation
Indices: 410843--411669 Score: 921
Period size: 137 Copynumber: 5.9 Consensus size: 138
410833 TTTCACCCGA
* * *
410843 CCTACTCCACACGTTAGGGCGCTCGGTGTAAGACCAGGTCATCCTGCCTACTCCCCTCTAGAAGC
1 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
* * * * *
410908 GCTAGGCATGAACTCTGTCTACCCTGCTTACCCT-ACACGTTG-AGATGCTCGGCGTGA-ATCT-
66 GCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCA-ACGTTGAAG-CGCTCGGCGTGACAT-TA
*
410969 GGGACACCCTG
128 GGAACACCCTG
* * * *
410980 CCTACTCCATACGTTAGAGCGCTCGACGTAAGATCAGGTCATCCTGCCTACTCCCCTTTGGAAGC
1 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
* *
411045 GCTCGGCATGCACTCTGTCTCCTCTGCCTACTCTCAACGTTGAAGCGCTCGGCGTGACATTAAGG
66 GCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCAACGTTGAAGCGCTCGGCGTGACATT-AGG
*
411110 CACATCTTATTTCACCCGG
130 ---A----A---CACCCTG
*
411129 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTTCCCTCTGGAAGC
1 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
* * *
411194 GCTCGGCATGTACTCTGTCTCCTCTGCCTACTCTAAACGTTGAAGCGCTCGGCGTGACATTAAGG
66 GCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCAACGTTGAAGCGCTCGGCGTGACATT-AGG
*
411259 CACATCTTGTTTCACCCGG
130 -A-A--------CACCCTG
411278 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
1 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
* * * * *
411343 GCTCGGCATGTACTCTGTCCCCCCTGCCTACTCTCAACGTTGAAGTGCTCGGCGTGATATTA-TA
66 GCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCAACGTTGAAGCGCTCGGCGTGACATTAGGA
411407 ACACCCTG
131 ACACCCTG
* * * *
411415 CCTACTCCACACGTTAGAGCGCCCGGCGTAAGATCAAGTCATCCTGCCTACTCCCCACTGGAAGC
1 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
* * * * * * * *
411480 GCTCGGCATGAACTCTATC-CCCCTTCCAACTCTTAACGGTGAAGCGCTCGACGTGAAAATAGGA
66 GCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCAACGTTGAAGCGCTCGGCGTGACATTAGGA
*
411544 ATACCCTG
131 ACACCCTG
* * * * * * *
411552 CCTACCCCATACATTAGAGCGCCCGGCGTAAGATCAGGTCATCCGGCCTACTCCCCACTGGAAGC
1 CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
* * * * *
411617 GCTCGGCATGAACTCTGTC-CCCCTTCCAACTCTTAATGTTAAAGCGCTCGGCG
66 GCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCAACGTTGAAGCGCTCGGCG
411670 AAATTCCTTA
Statistics
Matches: 611, Mismatches: 58, Indels: 42
0.86 0.08 0.06
Matches are distributed among these distances:
136 34 0.06
137 304 0.50
138 5 0.01
139 2 0.00
144 1 0.00
145 1 0.00
146 2 0.00
147 2 0.00
148 1 0.00
149 259 0.42
ACGTcount: A:0.20, C:0.34, G:0.22, T:0.24
Consensus pattern (138 bp):
CCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTCTGGAAGC
GCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCAACGTTGAAGCGCTCGGCGTGACATTAGGA
ACACCCTG
Found at i:411211 original size:286 final size:280
Alignment explanation
Indices: 410687--411669 Score: 1110
Period size: 286 Copynumber: 3.5 Consensus size: 280
410677 CATTTTATTT
410687 CACCCGGCCTACTCCACACGTTA-AGGCGCTCGGCGTAAGATCAGGTCATCCTGCCTACTCCCCT
1 CACCCGGCCTACTCCACACGTTAGA-GCGCTCGGCGTAAGATCAGGTCATCCTGCCTACTCCCCT
* * * * *
410751 CTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTAC-CCCACACGTTGAGGCGCTCGACCTG
65 CTGGAAGCGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCA-ACGTTGAAGCGCTCGGCGTG
* * *
410815 ATATTAAAGCGCATTATATTTCACCCGACCTACTCCACACGTTAGGGCGCTCGGTGTAAGACCAG
129 A-ATT-AAGC-CATT-TATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAG
* * *
410880 GTCATCCTGCCTACTCCCCTCTAGAAGCGCTAGGCATGAACTCTGTCTACCCTGCTTACCCTACA
190 GTCATCCTGCCTACTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCT-CCCTGCCTACCCTA-A
*
410945 CGTTG-AGATGCTCGGCGTGAATCT-GGGA
253 CGTTGAAG-CGCTCGGCGTGAAT-TAGGGA
* * * *
410973 CACCCTGCCTACTCCATACGTTAGAGCGCTCGACGTAAGATCAGGTCATCCTGCCTACTCCCCTT
1 CACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGATCAGGTCATCCTGCCTACTCCCCTC
* *
411038 TGGAAGCGCTCGGCATGCACTCTGTCTCCTCTGCCTACTCTCAACGTTGAAGCGCTCGGCGTGAC
66 TGGAAGCGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCAACGTTGAAGCGCTCGGCGTGA-
411103 ATTAAGGCACATCTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGT
130 ATTAA-GC-CAT-TTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGT
* * *
411168 CATCCTGCCTACTTCCCTCTGGAAGCGCTCGGCATGTACTCTGTCTCCTCTGCCTACTCTAAACG
192 CATCCTGCCTACTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTCC-CTGCCTACCCT-AACG
*
411233 TTGAAGCGCTCGGCGTGACATTAAGGCACATCTTGTTT
255 TTGAAGCGCTCGGCGTGA-ATT-AGG--------G--A
*
411271 CACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATCCTGCCTACTCCCCTC
1 CACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGATCAGGTCATCCTGCCTACTCCCCTC
* * *
411336 TGGAAGCGCTCGGCATGTACTCTGTCCCCCCTGCCTACTCTCAACGTTGAAGTGCTCGGCGTG-A
66 TGGAAGCGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCAACGTTGAAGCGCTCGGCGTGAA
** * * * *
411400 -T-----A-TTATAACACCCTGCCTACTCCACACGTTAGAGCGCCCGGCGTAAGATCAAGTCATC
131 TTAAGCCATTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATC
* * * * * * *
411458 CTGCCTACTCCCCACTGGAAGCGCTCGGCATGAACTCTATCCCCCTTCCAACTCTTAACGGTGAA
196 CTGCCTACTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTCCCTGCCTAC-CCTAACGTTGAA
* * *
411523 GCGCTCGACGTGAAAATAGGAA
260 GCGCTCGGCGTG-AATTAGGGA
* * * * * * * *
411545 TACCCTGCCTACCCCATACATTAGAGCGCCCGGCGTAAGATCAGGTCATCCGGCCTACTCCCCAC
1 CACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGATCAGGTCATCCTGCCTACTCCCCTC
* * * * *
411610 TGGAAGCGCTCGGCATGAACTCTGTC-CCCCTTCCAACTCTTAATGTTAAAGCGCTCGGCG
66 TGGAAGCGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCAACGTTGAAGCGCTCGGCG
411670 AAATTCCTTA
Statistics
Matches: 606, Mismatches: 69, Indels: 57
0.83 0.09 0.08
Matches are distributed among these distances:
273 28 0.05
274 81 0.13
284 3 0.00
285 31 0.05
286 328 0.54
287 10 0.02
288 3 0.00
295 1 0.00
296 2 0.00
298 119 0.20
ACGTcount: A:0.21, C:0.35, G:0.21, T:0.23
Consensus pattern (280 bp):
CACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGATCAGGTCATCCTGCCTACTCCCCTC
TGGAAGCGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTCAACGTTGAAGCGCTCGGCGTGAA
TTAAGCCATTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCATC
CTGCCTACTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTCCCTGCCTACCCTAACGTTGAAG
CGCTCGGCGTGAATTAGGGA
Found at i:414682 original size:30 final size:29
Alignment explanation
Indices: 414640--414996 Score: 172
Period size: 30 Copynumber: 12.0 Consensus size: 29
414630 CAAAAAGAAA
414640 AAGTTAAAAATAAGAATAAAATATATATTTT
1 AAGTT-AAAATAAGAATAAAATATAT-TTTT
* * * *
414671 ATGTTAAAATAAGGATAAACTATATTTAAT
1 AAGTTAAAATAAGAATAAAATATATTT-TT
* ** * * *
414701 AATTTAAGGTAAGATTAGAATATATTTAAT
1 AAGTTAAAATAAGAATAAAATATATTT-TT
* ** * * **
414731 AATTTAAGTTAAGAATATAATGTATGTAAT
1 AAGTTAAAATAAGAATAAAATATAT-TTTT
* **
414761 AAGTTAAAATAAAAATAAGCTATATTTTT
1 AAGTTAAAATAAGAATAAAATATATTTTT
* * *
414790 AAAAGTTAAGATAAAAATATAATATATTTTT
1 --AAGTTAAAATAAGAATAAAATATATTTTT
** *
414821 AAGTTATGATAAGATTAAAATATA-TTTT
1 AAGTTAAAATAAGAATAAAATATATTTTT
*
414849 AAGTTAAAATAAAAATAAAATATA--TTT
1 AAGTTAAAATAAGAATAAAATATATTTTT
*** * *
414876 AA--TAGAATATTTTTATTTTAAAT-TATTTACTCT
1 AAGTTA-AA-A-TAAGA-ATAAAATATATTT--T-T
** *
414909 ATTTTATAAGAT-A-TATAAAATATATTTTT
1 AAGTTA-AA-ATAAGAATAAAATATATTTTT
*
414938 AAGTTAAAATAAGAATAAAATATATTTTA
1 AAGTTAAAATAAGAATAAAATATATTTTT
*
414967 AAGTTAATATAAGAATAAAATATATATTTT
1 AAGTTAAAATAAGAATAAAATATAT-TTTT
414997 CAATGTTTAG
Statistics
Matches: 250, Mismatches: 57, Indels: 39
0.72 0.16 0.11
Matches are distributed among these distances:
25 2 0.01
26 2 0.01
27 8 0.03
28 31 0.12
29 72 0.29
30 86 0.34
31 35 0.14
32 6 0.02
33 2 0.01
34 1 0.00
35 5 0.02
ACGTcount: A:0.51, C:0.01, G:0.08, T:0.41
Consensus pattern (29 bp):
AAGTTAAAATAAGAATAAAATATATTTTT
Found at i:414796 original size:31 final size:31
Alignment explanation
Indices: 414761--414875 Score: 107
Period size: 31 Copynumber: 3.9 Consensus size: 31
414751 TGTATGTAAT
*
414761 AAGTTAAAATAAAAATA-AGCTATATTTTTAA
1 AAGTTAAAATAAAAATATA-ATATATTTTTAA
*
414792 AAGTTAAGATAAAAATATAATATATTTTT--
1 AAGTTAAAATAAAAATATAATATATTTTTAA
** * * *
414821 AAGTTATGATAAGATTAAAATATA-TTTT--
1 AAGTTAAAATAAAAATATAATATATTTTTAA
*
414849 AAGTTAAAATAAAAATAAAATATATTT
1 AAGTTAAAATAAAAATATAATATATTT
414876 AATAGAATAT
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 24 0.33
29 22 0.31
31 25 0.35
32 1 0.01
ACGTcount: A:0.54, C:0.01, G:0.07, T:0.38
Consensus pattern (31 bp):
AAGTTAAAATAAAAATATAATATATTTTTAA
Found at i:414962 original size:29 final size:29
Alignment explanation
Indices: 414923--414996 Score: 121
Period size: 29 Copynumber: 2.5 Consensus size: 29
414913 TATAAGATAT
414923 ATAAAATATATTTTTAAGTTAAAATAAGA
1 ATAAAATATATTTTTAAGTTAAAATAAGA
* *
414952 ATAAAATATATTTTAAAGTTAATATAAGA
1 ATAAAATATATTTTTAAGTTAAAATAAGA
414981 ATAAAATATATATTTT
1 ATAAAATATAT-TTTT
414997 CAATGTTTAG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 38 0.93
30 3 0.07
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (29 bp):
ATAAAATATATTTTTAAGTTAAAATAAGA
Found at i:432351 original size:21 final size:21
Alignment explanation
Indices: 432314--432353 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
432304 CCCCCTTCGA
*
432314 AGGGGAACTGATTCCCCCCAC
1 AGGGGAACTGATACCCCCCAC
432335 AGGGGAA-TCGATACCCCCC
1 AGGGGAACT-GATACCCCCC
432354 TGGGGTTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.25, C:0.38, G:0.25, T:0.12
Consensus pattern (21 bp):
AGGGGAACTGATACCCCCCAC
Found at i:440224 original size:21 final size:21
Alignment explanation
Indices: 440200--440265 Score: 57
Period size: 21 Copynumber: 3.1 Consensus size: 21
440190 ATATGTAATC
440200 CTTTGGAACATATATATGGGT
1 CTTTGGAACATATATATGGGT
440221 CTTTGAGACACATAT-T-T-GGT
1 CTTTG-GA-ACATATATATGGGT
* * *
440241 ATTTTGGAATATATATATGGTT
1 -CTTTGGAACATATATATGGGT
440263 CTT
1 CTT
440266 AAGGAGATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
19 5 0.14
20 6 0.17
21 13 0.37
22 5 0.14
23 6 0.17
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.44
Consensus pattern (21 bp):
CTTTGGAACATATATATGGGT
Found at i:440320 original size:21 final size:21
Alignment explanation
Indices: 440290--440339 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
440280 ATGGTTTTTT
* * *
440290 GGACATATATGTGGTCTTTGG
1 GGACAAATATGTGGTCCTTCG
440311 GGACAAATATGTGGTCCTTCG
1 GGACAAATATGTGGTCCTTCG
440332 GGACAAAT
1 GGACAAAT
440340 TCTATGTGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (21 bp):
GGACAAATATGTGGTCCTTCG
Found at i:443165 original size:881 final size:881
Alignment explanation
Indices: 441463--444100 Score: 4857
Period size: 881 Copynumber: 3.0 Consensus size: 881
441453 GGATAAATGC
* * * *
441463 TATCATGAGAATATTAGAAGACCAAGTAATGTGGTTATTATTTTCAGAAAAGTTCAAGAATTGGT
1 TATCATGAGAATATTAGAAGATCAAGTAATGTGGTTATTGTTTTCATAAAAGTTAAAGAATTGGT
*
441528 ACATCGGTGATCAGCTTATAAGACGAAGGAGGTTAGAAGGTTTGAGTTTGAA-TTCTGGGAATTA
66 ACATCGGTGATCAGTTTATAAGACGAAGGAGGTTAGAAGGTTTGAGTTTGAATTTC-GGGAATTA
* *
441592 CATCGTGTATGAGTAAGAGTGTGAATTCAATAATTTGAGTAAGTTACTGTTAAGTTATTCCGATT
130 CATCGTGTATGAGTAAGAGTGTGAATTCAATAATTTTAGTAAATTACTGTTAAGTTATTCCGATT
*
441657 GAAAATGATGTATATGATTGGTTTGATAAAGATTTGTGCTCTAGATTGAAAAAGTTGGTGCTGAC
195 GAAAATGATGTATATGATTGGTTTGATGAAGATTTGTGCTCTAGATTGAAAAAGTTGGTGCTGAC
441722 TAACAAGGTTATGTGATGGTAAGTATATAGTGTTAAAAGATTTGAAGAAAATATCAGGTTGAGCT
260 TAACAAGGTTATGTGATGGTAAGTATATAGTGTTAAAAGATTTGAAGAAAATATCAGGTTGAGCT
441787 AATCAAGTATGGCATGGATTTATGTATGATTGTGTATATTGGTCATGTAATTGTGATGTAGTCAA
325 AATCAAGTATGGCATGGATTTATGTATGATTGTGTATATTGGTCATGTAATTGTGATGTAGTCAA
*
441852 GGAAATAAGGATTTGTATATTTGAAAGAAGCTAAAGATGTAGTAGAATATGTGTATTGTAAATTG
390 GGAAATAAGGATTTGTATATTTGAAAGAAGCTAAAGATGTAGTAGAATATGTGTATTATAAATTG
* *
441917 AATAAGAATTTTATAAGAATAAGGTTCTGTGCAATTCGTGTGGATTATCAAAATTATGAAGATGT
455 AATAAGAATTTTATAAGAATAAGGTTTTGTGCAATTCGTGTGGATTATCAAAGTTATGAAGATGT
441982 GATAAAGATTAGTAAATAGAGATAAGTGTAAGTGATATGAGAAAGAGTATGAGAGCATGAAAGAA
520 GATAAAGATTAGTAAATAGAGATAAGTGTAAGTGATATGAGAAAGAGTATGAGAGCATGAAAGAA
442047 AAGATATAACCTATGTTACAATGAGATCTTGATTTCTGGAAGAATAAATAGATAATGAAATGAAA
585 AAGATATAACCTATGTTACAATGAGATCTTGATTTCTGGAAGAATAAATAGATAATGAAATGAAA
* *
442112 AGATGGAGTTTAAAGGATCAGGTATGACAAGGGTTATATTGAGGTATAGATTATAAGTTTAATAT
650 AGATGGAGTTTAAAGGATCAAGTATGACAAGGGTTATATTGAGGTGTAGATTATAAGTTTAATAT
442177 AGAAGTAAGAAAAGTATGTAAGGTTATATGAAAAGATTGTTTGACTCCGTAAGATGTATGTCTTA
715 AGAAGTAAGAAAAGTATGTAAGGTTATATGAAAAGATTGTTTGACTCCGTAAGATGTATGTCTTA
*
442242 ATCATATCGGATGAAGATTTAAGGTTGTGTTTCTTGATCAAGTAGACGAACTCAGAGAGGGATAA
780 ATCATATCGGATGAAGATTTAAGGTTGTGTTTCTTGATCAAGTAGACGTACTCAGAGAGGGATAA
442307 GGATTTATTTATATGTATTAAGGAAGTTCAAGAATAT
845 GGATTTATTTATATGTATTAAGGAAGTTCAAGAATAT
442344 TATCATGAGAATATTAGAAGATCAAGTAATGTGGTTATTGTTTTCATAAAAGTTAAAGAATTGGT
1 TATCATGAGAATATTAGAAGATCAAGTAATGTGGTTATTGTTTTCATAAAAGTTAAAGAATTGGT
**
442409 ACATCGGTGATCAGTTTATAAGACGAATAAGGTTAGAAGGTTTGAGTTTGAATTTCGGGAATTAC
66 ACATCGGTGATCAGTTTATAAGACGAAGGAGGTTAGAAGGTTTGAGTTTGAATTTCGGGAATTAC
*
442474 ATCGTGTATGAGTAAGAGTGTGAATTCAATAATTTTAGTAAATTACTGTTAAGTTATTCCAATTG
131 ATCGTGTATGAGTAAGAGTGTGAATTCAATAATTTTAGTAAATTACTGTTAAGTTATTCCGATTG
* *
442539 AAAATGATGTATATGATTGGTTTGATGAAGATTTGTGCTCTAGATTGAAACAGTTAGTGCTGACT
196 AAAATGATGTATATGATTGGTTTGATGAAGATTTGTGCTCTAGATTGAAAAAGTTGGTGCTGACT
442604 AACAAGGTTATGTGATGGTAAGTATATAGTGTTAAAAGATTTGAAGAAAATATCAGGTTGAGCTA
261 AACAAGGTTATGTGATGGTAAGTATATAGTGTTAAAAGATTTGAAGAAAATATCAGGTTGAGCTA
442669 ATCAAGTATGGCATGGATTTATGTATGATTGTGTATATTGGTCATGTAATTGTGATGTAGTCAAG
326 ATCAAGTATGGCATGGATTTATGTATGATTGTGTATATTGGTCATGTAATTGTGATGTAGTCAAG
* *
442734 GAAATAAGGATTTGTATATTTGAAAGAAGCTAAAGGTGTAGTAGAATATGAGTATTATAAATTGA
391 GAAATAAGGATTTGTATATTTGAAAGAAGCTAAAGATGTAGTAGAATATGTGTATTATAAATTGA
* *
442799 ATAAGAATTTTATAATAATAAGGTTTTGTACAATTCGTGTGGATTATCAAAGTTATGAAGATGTG
456 ATAAGAATTTTATAAGAATAAGGTTTTGTGCAATTCGTGTGGATTATCAAAGTTATGAAGATGTG
*
442864 ATAAAGATTAGTAAATAGAGATAAGTGTAAGTGATATGAGAAATAGTATGAGAGCATGAAAGAAA
521 ATAAAGATTAGTAAATAGAGATAAGTGTAAGTGATATGAGAAAGAGTATGAGAGCATGAAAGAAA
* *
442929 AGATATAACCTATGTTACAATGAGATCTTGATTTATGGAAGAATAAATATATAATGAAATGAAAA
586 AGATATAACCTATGTTACAATGAGATCTTGATTTCTGGAAGAATAAATAGATAATGAAATGAAAA
442994 GATGGAGTTTAAAGGATCAAGTATGACAAGGGTTATATTGAGGTGTAGATTATAAGTTTAATATA
651 GATGGAGTTTAAAGGATCAAGTATGACAAGGGTTATATTGAGGTGTAGATTATAAGTTTAATATA
443059 GAAGTAAGAAAAGTATGTAAGGTTATATGAAAAGATTGTTTGACTCCGTAAGATGTATGTCTTAA
716 GAAGTAAGAAAAGTATGTAAGGTTATATGAAAAGATTGTTTGACTCCGTAAGATGTATGTCTTAA
*
443124 TCATATCAGATGAAGATTTAAGGTTGTGTTTCTTGATCAAGTAGACGTACTCAGAGAGGGATAAG
781 TCATATCGGATGAAGATTTAAGGTTGTGTTTCTTGATCAAGTAGACGTACTCAGAGAGGGATAAG
443189 GATTTATTTATATGTATTAAGGAAGTTCAAGAATAT
846 GATTTATTTATATGTATTAAGGAAGTTCAAGAATAT
*
443225 TATCATGAGAATATTAGAAGATCAAGTAATGTGGTTATTGGTTTCATAAAAGTTAAAGAATTGGT
1 TATCATGAGAATATTAGAAGATCAAGTAATGTGGTTATTGTTTTCATAAAAGTTAAAGAATTGGT
443290 ACATCGGTGATCAGTTTATAAGACGAAGGAGGTTAGAAGGTTTGAGTTTGAATTTCGGGAATTAC
66 ACATCGGTGATCAGTTTATAAGACGAAGGAGGTTAGAAGGTTTGAGTTTGAATTTCGGGAATTAC
*
443355 ATCGTGTATGAGTAAGAGTGTGAATTCAATAATTTTAGTAAATTACTGTTAAGCTATTCCGATTG
131 ATCGTGTATGAGTAAGAGTGTGAATTCAATAATTTTAGTAAATTACTGTTAAGTTATTCCGATTG
443420 AAAATGATGTATATGATTGGTTTGATGAAGATTTGTGCTCTAGATTGAAAAAGTTGGTGCTGACT
196 AAAATGATGTATATGATTGGTTTGATGAAGATTTGTGCTCTAGATTGAAAAAGTTGGTGCTGACT
* * * *
443485 AACAAGGTTATGTGGTAGTAAGTATATAGTGTTAAAATATTTGAAGAAAATATCAGGTTGAACTA
261 AACAAGGTTATGTGATGGTAAGTATATAGTGTTAAAAGATTTGAAGAAAATATCAGGTTGAGCTA
* *
443550 ATCAAGTATGGCATGGATTTATGCATGATTGTGTATATTGGTCATGTAACTGTGATGTAGTCAAG
326 ATCAAGTATGGCATGGATTTATGTATGATTGTGTATATTGGTCATGTAATTGTGATGTAGTCAAG
**
443615 GAAATAAGGATTTGTATATTTGAAAGAAATTAAAGATGTAGTAGAATATGTGTATTATAAATTGA
391 GAAATAAGGATTTGTATATTTGAAAGAAGCTAAAGATGTAGTAGAATATGTGTATTATAAATTGA
*
443680 ATAAGGATTTTATAAGAATAAGGTTTTGTGCAATTCGTGTGGATTATCAAAGTTATGAAGATGTG
456 ATAAGAATTTTATAAGAATAAGGTTTTGTGCAATTCGTGTGGATTATCAAAGTTATGAAGATGTG
443745 ATAAAGATTAGTAAATAGAGATAAGTGTAAGTGATATGAGAAAGAGTATGAGAGCATGAAAGAAA
521 ATAAAGATTAGTAAATAGAGATAAGTGTAAGTGATATGAGAAAGAGTATGAGAGCATGAAAGAAA
* *
443810 ATATATAA-CTATGTTACAAGGAGATCTTGATTTCTGGAAGAATAAATAGATAATGAAATGAAAA
586 AGATATAACCTATGTTACAATGAGATCTTGATTTCTGGAAGAATAAATAGATAATGAAATGAAAA
*
443874 GATGGAGTTTAAAGGATCATGTATGACAAGGGTTATATTGAGGTGTAGATTATAAGTTTAATATA
651 GATGGAGTTTAAAGGATCAAGTATGACAAGGGTTATATTGAGGTGTAGATTATAAGTTTAATATA
443939 GAAGTAAGAAAAGTATGTAAGGTTATATGAAAAGATTGTTTGACTCCGTAAGATGTATGTCTTAA
716 GAAGTAAGAAAAGTATGTAAGGTTATATGAAAAGATTGTTTGACTCCGTAAGATGTATGTCTTAA
*
444004 TCATATCGGATGAAGATTTAAGGTTGCGTTTCTTGATCAAGTAGACGTACTCAGAGAGGGATAAG
781 TCATATCGGATGAAGATTTAAGGTTGTGTTTCTTGATCAAGTAGACGTACTCAGAGAGGGATAAG
* *
444069 GATTTATTTATATGAATTAAGGAAGTTAAAGA
846 GATTTATTTATATGTATTAAGGAAGTTCAAGA
444101 TACAATCAAA
Statistics
Matches: 1699, Mismatches: 57, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
880 275 0.16
881 1421 0.84
882 3 0.00
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.33
Consensus pattern (881 bp):
TATCATGAGAATATTAGAAGATCAAGTAATGTGGTTATTGTTTTCATAAAAGTTAAAGAATTGGT
ACATCGGTGATCAGTTTATAAGACGAAGGAGGTTAGAAGGTTTGAGTTTGAATTTCGGGAATTAC
ATCGTGTATGAGTAAGAGTGTGAATTCAATAATTTTAGTAAATTACTGTTAAGTTATTCCGATTG
AAAATGATGTATATGATTGGTTTGATGAAGATTTGTGCTCTAGATTGAAAAAGTTGGTGCTGACT
AACAAGGTTATGTGATGGTAAGTATATAGTGTTAAAAGATTTGAAGAAAATATCAGGTTGAGCTA
ATCAAGTATGGCATGGATTTATGTATGATTGTGTATATTGGTCATGTAATTGTGATGTAGTCAAG
GAAATAAGGATTTGTATATTTGAAAGAAGCTAAAGATGTAGTAGAATATGTGTATTATAAATTGA
ATAAGAATTTTATAAGAATAAGGTTTTGTGCAATTCGTGTGGATTATCAAAGTTATGAAGATGTG
ATAAAGATTAGTAAATAGAGATAAGTGTAAGTGATATGAGAAAGAGTATGAGAGCATGAAAGAAA
AGATATAACCTATGTTACAATGAGATCTTGATTTCTGGAAGAATAAATAGATAATGAAATGAAAA
GATGGAGTTTAAAGGATCAAGTATGACAAGGGTTATATTGAGGTGTAGATTATAAGTTTAATATA
GAAGTAAGAAAAGTATGTAAGGTTATATGAAAAGATTGTTTGACTCCGTAAGATGTATGTCTTAA
TCATATCGGATGAAGATTTAAGGTTGTGTTTCTTGATCAAGTAGACGTACTCAGAGAGGGATAAG
GATTTATTTATATGTATTAAGGAAGTTCAAGAATAT
Found at i:444671 original size:20 final size:21
Alignment explanation
Indices: 444623--444679 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
444613 TGCACAAGGT
*
444623 GAGTATCGGTACCATAAGAAG
1 GAGTATCGGTACTATAAGAAG
444644 GTAGTATCGGTACTAT-AGTAA-
1 G-AGTATCGGTACTATAAG-AAG
*
444665 GAGTATCGATACTAT
1 GAGTATCGGTACTAT
444680 TAAGCTTGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 13 0.41
21 4 0.12
22 15 0.47
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (21 bp):
GAGTATCGGTACTATAAGAAG
Found at i:444736 original size:13 final size:13
Alignment explanation
Indices: 444718--444751 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
444708 CTTTAGCTTA
444718 AGTTATATTGATT
1 AGTTATATTGATT
444731 AGTTATATTGATT
1 AGTTATATTGATT
444744 AGTTATAT
1 AGTTATAT
444752 ACGATTCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (13 bp):
AGTTATATTGATT
Found at i:445446 original size:21 final size:21
Alignment explanation
Indices: 445420--445459 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
445410 TCGAGGGTTT
445420 TATGTGGTCCTTCGGGACATA
1 TATGTGGTCCTTCGGGACATA
*
445441 TATGTGGTCCTTTGGGACA
1 TATGTGGTCCTTCGGGACA
445460 AATTCTATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.30, T:0.35
Consensus pattern (21 bp):
TATGTGGTCCTTCGGGACATA
Found at i:447028 original size:14 final size:13
Alignment explanation
Indices: 446992--447037 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
446982 ATAAAATATC
446992 AAAACAATTAATAA
1 AAAAC-ATTAATAA
*
447006 TAAAC-TTAAATAA
1 AAAACATT-AATAA
447019 AAAACATTAATAA
1 AAAACATTAATAA
447032 AAAACA
1 AAAACA
447038 GTGAAAACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
12 2 0.07
13 20 0.71
14 6 0.21
ACGTcount: A:0.70, C:0.09, G:0.00, T:0.22
Consensus pattern (13 bp):
AAAACATTAATAA
Found at i:447886 original size:11 final size:11
Alignment explanation
Indices: 447872--447896 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
447862 TTCCTAATCT
447872 CTCTCTTTCTC
1 CTCTCTTTCTC
447883 CTCTCTTTCTC
1 CTCTCTTTCTC
447894 CTC
1 CTC
447897 CCCATTCGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (11 bp):
CTCTCTTTCTC
Found at i:448234 original size:13 final size:13
Alignment explanation
Indices: 448215--448247 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
448205 CACGAAGAAG
448215 GAAAAAA-GGAAA
1 GAAAAAATGGAAA
448227 GCAAAAAATGGAAA
1 G-AAAAAATGGAAA
448241 GAAAAAA
1 GAAAAAA
448248 CAAGTCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 1 0.05
13 12 0.63
14 6 0.32
ACGTcount: A:0.73, C:0.03, G:0.21, T:0.03
Consensus pattern (13 bp):
GAAAAAATGGAAA
Found at i:448945 original size:91 final size:90
Alignment explanation
Indices: 448713--448966 Score: 393
Period size: 90 Copynumber: 2.8 Consensus size: 90
448703 GAATCGAGCT
*
448713 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCAACGGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATCGGATGAGTTCTTCTCATTAT
* * *
448778 GAACTCCCCGCTGGAAATGTTGATG
66 GAACTCTCCACTGGAAATGTTGATC
*
448803 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTT-TGCCCTCGTCGGATGAGTTCTTCTCATTA
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCT-CCCTCATCGGATGAGTTCTTCTCATTA
* *
448867 TTAACTCTTCACTGGAAATGTTGAGTC
65 TGAACTCTCCACTGGAAATGTTGA-TC
* * *
448894 AAGGTTGAACAAGTTCTTCTCATTATGAACTTATTCTCCCTTATTGGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATCGGATGAGTTCTTCTCATTAT
448959 GAACTCTC
66 GAACTCTC
448967 TATCAAAAAT
Statistics
Matches: 148, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
89 1 0.01
90 80 0.54
91 66 0.45
92 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.38
Consensus pattern (90 bp):
AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATCGGATGAGTTCTTCTCATTAT
GAACTCTCCACTGGAAATGTTGATC
Found at i:449901 original size:54 final size:54
Alignment explanation
Indices: 449838--449942 Score: 140
Period size: 54 Copynumber: 1.9 Consensus size: 54
449828 GCTTCTTCAA
*** * *
449838 AAAAATTCATTTACAGTTATCAAGAAACCC-CTAAAATTAGGCTTAGTTTCTTTC
1 AAAAATTCATTTA-AAACATCAAGAAACCCTCGAAAATTAGGCATAGTTTCTTTC
*
449892 AAAAATTCATTTAAAACATTAAGAAACCCTCGAAAATTAGGCATAGTTTCT
1 AAAAATTCATTTAAAACATCAAGAAACCCTCGAAAATTAGGCATAGTTTCT
449943 AAAAATCTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
53 12 0.27
54 32 0.73
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (54 bp):
AAAAATTCATTTAAAACATCAAGAAACCCTCGAAAATTAGGCATAGTTTCTTTC
Found at i:450203 original size:42 final size:40
Alignment explanation
Indices: 450090--450203 Score: 129
Period size: 42 Copynumber: 2.8 Consensus size: 40
450080 GCCCAAAGGT
* * *
450090 CTTATGGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGA
1 CTTATAGATGACCCGAAGGACTTATCATC-AGCTCGAAAGA
* *
450131 CTTATAGATGACCCGAAGGATTTAAGCATCAGACTCGAAAGA
1 CTTATAGATGACCCGAAGGACTT-ATCATCAG-CTCGAAAGA
* *
450173 CTTATTGATGACCTGAAGGACTTACTCATCA
1 CTTATAGATGACCCGAAGGACTTA-TCATCA
450204 ATAAACCCTT
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 22 0.36
42 39 0.64
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (40 bp):
CTTATAGATGACCCGAAGGACTTATCATCAGCTCGAAAGA
Found at i:450393 original size:55 final size:53
Alignment explanation
Indices: 450241--450410 Score: 175
Period size: 55 Copynumber: 3.1 Consensus size: 53
450231 TCTTAGGAGT
* *
450241 CATCAAGGAACCCCTAAAAATTAGGCTTAGCTTCCTTTAAAAATTCTTTGAAAA
1 CATCAAGAAACCCCT-AAAATTAGGCTTAGCTTCTTTTAAAAATTCTTTGAAAA
* * * *
450295 TCATTATCAAGAAATCCCTGAAAATCATGCTTAG--T-TTCTAAAAATTCATTTGAAAA
1 -C---ATCAAGAAACCCCT-AAAATTAGGCTTAGCTTCTTTTAAAAATTC-TTTGAAAA
450351 CATCAAGAAACCCCTAAATATTAGGCTTAGCTTCTTTTAAAAATTGCTTTGAAAA
1 CATCAAGAAACCCCTAAA-ATTAGGCTTAGCTTCTTTTAAAAATT-CTTTGAAAA
*
450406 TATCA
1 CATCA
450411 TGTTGTTTGG
Statistics
Matches: 94, Mismatches: 12, Indels: 18
0.76 0.10 0.15
Matches are distributed among these distances:
51 3 0.03
52 22 0.23
54 1 0.01
55 34 0.36
56 10 0.11
58 24 0.26
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.32
Consensus pattern (53 bp):
CATCAAGAAACCCCTAAAATTAGGCTTAGCTTCTTTTAAAAATTCTTTGAAAA
Found at i:452379 original size:8 final size:8
Alignment explanation
Indices: 452366--452479 Score: 85
Period size: 8 Copynumber: 14.0 Consensus size: 8
452356 TATTCCTTTC
452366 CTTTTTTT
1 CTTTTTTT
452374 C-TTTTTT
1 CTTTTTTT
452381 CTTTTTTCT
1 CTTTTTT-T
*
452390 CTTTTTCT
1 CTTTTTTT
*
452398 CTTTTTCT
1 CTTTTTTT
452406 CTTATTTTT
1 CTT-TTTTT
452415 -TTCTTTTT
1 CTT-TTTTT
*
452423 -TTTTCTT
1 CTTTTTTT
*
452430 -ATTTTTT
1 CTTTTTTT
452437 CTTTTTTT
1 CTTTTTTT
452445 CATTTTCTCTT
1 C-TTTT-T-TT
452456 -TTTTTTT
1 CTTTTTTT
*
452463 CCTTTTTT
1 CTTTTTTT
452471 CTTTATTTT
1 CTTT-TTTT
452480 TATGTCTTTT
Statistics
Matches: 88, Mismatches: 9, Indels: 17
0.77 0.08 0.15
Matches are distributed among these distances:
7 18 0.20
8 44 0.50
9 23 0.26
10 1 0.01
11 2 0.02
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.81
Consensus pattern (8 bp):
CTTTTTTT
Found at i:452417 original size:21 final size:18
Alignment explanation
Indices: 452367--452480 Score: 108
Period size: 18 Copynumber: 6.3 Consensus size: 18
452357 ATTCCTTTCC
452367 TTTTTTTC-TTTTTTC-T
1 TTTTTTTCTTTTTTTCTT
* *
452383 TTTTTCTCTTTTTCTCTT
1 TTTTTTTCTTTTTTTCTT
* *
452401 TTTCTCTTATTTTTTTCTT
1 TTT-TTTTCTTTTTTTCTT
*
452420 TTTTTTTCTTATTTTT-TC
1 TTTTTTTCTT-TTTTTCTT
* *
452438 TTTTTTTCATTTTCTCTT
1 TTTTTTTCTTTTTTTCTT
*
452456 TTTTTTTCCTTTTTTCTT
1 TTTTTTTCTTTTTTTCTT
452474 TATTTTT
1 T-TTTTT
452481 ATGTCTTTTT
Statistics
Matches: 78, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
16 7 0.09
17 10 0.13
18 37 0.47
19 24 0.31
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTTTCTTTTTTTCTT
Found at i:452451 original size:47 final size:46
Alignment explanation
Indices: 452367--452480 Score: 144
Period size: 46 Copynumber: 2.5 Consensus size: 46
452357 ATTCCTTTCC
* * *
452367 TTTTT-TTCTTTTTTCTT-TTTTCTCTTTTTCTCTTTTTCTCTTATT
1 TTTTTCTTTTTTTTTCTTATTTTTTCTTTTTCTCATTTTCTCTT-TT
*
452412 TTTTTCTTTTTTTTTCTTATTTTTTCTTTTTTTCATTTTCTCTTTT
1 TTTTTCTTTTTTTTTCTTATTTTTTCTTTTTCTCATTTTCTCTTTT
* *
452458 TTTTTCCTTTTTTCT-TTATTTTT
1 TTTTTCTTTTTTTTTCTTATTTTT
452481 ATGTCTTTTT
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
45 13 0.21
46 26 0.43
47 22 0.36
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.82
Consensus pattern (46 bp):
TTTTTCTTTTTTTTTCTTATTTTTTCTTTTTCTCATTTTCTCTTTT
Found at i:457231 original size:6 final size:6
Alignment explanation
Indices: 457215--457258 Score: 56
Period size: 6 Copynumber: 7.5 Consensus size: 6
457205 AATTATCTAC
*
457215 AAAAT- AAAATA AAAATA AAAATA AAAATA AAGGA-A AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AA-AATA AAAATA AAA
457259 TTATTATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
5 6 0.18
6 27 0.79
7 1 0.03
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:458717 original size:19 final size:20
Alignment explanation
Indices: 458678--458730 Score: 90
Period size: 19 Copynumber: 2.7 Consensus size: 20
458668 TATTTGACTA
458678 GGGGTATCGGTACCACAAAG
1 GGGGTATCGGTACCACAAAG
*
458698 GGGGTATCGATACCAC-AAG
1 GGGGTATCGGTACCACAAAG
458717 GGGGTATCGGTACC
1 GGGGTATCGGTACC
458731 CGTAGAGCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.26, C:0.21, G:0.36, T:0.17
Consensus pattern (20 bp):
GGGGTATCGGTACCACAAAG
Found at i:458824 original size:20 final size:20
Alignment explanation
Indices: 458771--458817 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
458761 AACTTGCATA
*
458771 GGGGTATCGGTACCACAAAG
1 GGGGTATCTGTACCACAAAG
458791 GGGGTATCTGTACCACAAAG
1 GGGGTATCTGTACCACAAAG
458811 GGGGTAT
1 GGGGTAT
458818 TAGTACCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.36, T:0.19
Consensus pattern (20 bp):
GGGGTATCTGTACCACAAAG
Found at i:460286 original size:223 final size:226
Alignment explanation
Indices: 459885--460337 Score: 867
Period size: 223 Copynumber: 2.0 Consensus size: 226
459875 AGCTCCCGGT
459885 GTTTGCTTGGTGGATCGAACCATTGATCACCTTCATTCTTCCATCCTAGTTTCTTTAAGGATATC
1 GTTTGCTTGGTGGATCGAACCATTGATCACCTTCATTCTTCCATCCTAGTTTCTTTAAGGATATC
459950 AAGTTGATTTGGTTTTTGAGTGGGATGGTTACATCAAGCTGTACTCTAAGCTCGGCTTTTGTAAA
66 AAGTTGATTTGG-TTTTGAGTGGGATGGTTA-ATCAAGCTGTACTCTAAGCTCGGCTTTTGTAAA
460015 CAAATTACTCAGAAGACAACTATAAACTAGAGTTTCACAAACTTTCTTATTAGGGACAAGGTTTA
129 CAAATTACTCAGAAGACAACTATAAACTAGAGTTTCACAAACTTTCTTATTAGGGACAAGGTTTA
460080 CGGTTTCAACGAGTTCGGAAAAGATAATCTGAG
194 CGGTTTCAACGAGTTCGGAAAAGATAATCTGAG
460113 GTTTGCTT-GTGGATCGAACCATTGATCACCTTCATTCTTCCATCCTAGTTTCTTTAAGGATATC
1 GTTTGCTTGGTGGATCGAACCATTGATCACCTTCATTCTTCCATCCTAGTTTCTTTAAGGATATC
460177 AAGTTGATTTGG-TTTGAGTGGGATGGTT-ATCAAGCTGTACTCTAAGCTCGGCTTTTGTAAACA
66 AAGTTGATTTGGTTTTGAGTGGGATGGTTAATCAAGCTGTACTCTAAGCTCGGCTTTTGTAAACA
460240 AATTACTCAGAAGACAACTATAAACTAGAGTTTCACAAACTTTCTTATTAGGGACAAGGTTTACG
131 AATTACTCAGAAGACAACTATAAACTAGAGTTTCACAAACTTTCTTATTAGGGACAAGGTTTACG
460305 GTTTCAACGAGTTCGGAAAAGATAATCTGAG
196 GTTTCAACGAGTTCGGAAAAGATAATCTGAG
460336 GT
1 GT
460338 AAGTTTATTT
Statistics
Matches: 225, Mismatches: 0, Indels: 5
0.98 0.00 0.02
Matches are distributed among these distances:
223 133 0.59
225 16 0.07
227 68 0.30
228 8 0.04
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (226 bp):
GTTTGCTTGGTGGATCGAACCATTGATCACCTTCATTCTTCCATCCTAGTTTCTTTAAGGATATC
AAGTTGATTTGGTTTTGAGTGGGATGGTTAATCAAGCTGTACTCTAAGCTCGGCTTTTGTAAACA
AATTACTCAGAAGACAACTATAAACTAGAGTTTCACAAACTTTCTTATTAGGGACAAGGTTTACG
GTTTCAACGAGTTCGGAAAAGATAATCTGAG
Found at i:460541 original size:15 final size:15
Alignment explanation
Indices: 460521--460549 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
460511 TGTTTCCTTT
460521 TCATTATCTAATCCG
1 TCATTATCTAATCCG
460536 TCATTATCTAATCC
1 TCATTATCTAATCC
460550 AAATGCGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.03, T:0.41
Consensus pattern (15 bp):
TCATTATCTAATCCG
Found at i:461204 original size:16 final size:17
Alignment explanation
Indices: 461185--461217 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
461175 CTATTTCAAC
461185 CTAGAACTAA-TTAAAA
1 CTAGAACTAAGTTAAAA
*
461201 CTAGTACTAAGTTAAAA
1 CTAGAACTAAGTTAAAA
461218 AAATCAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.52, C:0.12, G:0.09, T:0.27
Consensus pattern (17 bp):
CTAGAACTAAGTTAAAA
Found at i:461522 original size:23 final size:23
Alignment explanation
Indices: 461494--461560 Score: 116
Period size: 23 Copynumber: 2.9 Consensus size: 23
461484 CCCTCATGGG
*
461494 GGTATCAGTACCCATGCAAAGAT
1 GGTATCAGTACCCATTCAAAGAT
*
461517 GGTATCGGTACCCATTCAAAGAT
1 GGTATCAGTACCCATTCAAAGAT
461540 GGTATCAGTACCCATTCAAAG
1 GGTATCAGTACCCATTCAAAG
461561 GGGGTATCGA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (23 bp):
GGTATCAGTACCCATTCAAAGAT
Found at i:461574 original size:23 final size:23
Alignment explanation
Indices: 461493--461568 Score: 107
Period size: 23 Copynumber: 3.3 Consensus size: 23
461483 ACCCTCATGG
*
461493 GGGTATCAGTACCCATGCAAAGA
1 GGGTATCAGTACCCATTCAAAGA
* *
461516 TGGTATCGGTACCCATTCAAAGA
1 GGGTATCAGTACCCATTCAAAGA
* *
461539 TGGTATCAGTACCCATTCAAAGG
1 GGGTATCAGTACCCATTCAAAGA
461562 GGGTATC
1 GGGTATC
461569 GATACCTAGC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (23 bp):
GGGTATCAGTACCCATTCAAAGA
Found at i:471257 original size:25 final size:25
Alignment explanation
Indices: 471227--471282 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
471217 TAGTATATAT
471227 GAACTCTTGAATTGTAGCTTCCAAA
1 GAACTCTTGAATTGTAGCTTCCAAA
471252 GAACTCTTGAATTGTAGCTTCCAAA
1 GAACTCTTGAATTGTAGCTTCCAAA
471277 GAACTC
1 GAACTC
471283 ATGCTCGCTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.30
Consensus pattern (25 bp):
GAACTCTTGAATTGTAGCTTCCAAA
Found at i:473036 original size:11 final size:11
Alignment explanation
Indices: 473022--473047 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
473012 TGAAAACAAC
473022 ATAAAATAAAT
1 ATAAAATAAAT
473033 ATAAAATAAAT
1 ATAAAATAAAT
473044 ATAA
1 ATAA
473048 GTACAAGGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
ATAAAATAAAT
Found at i:474826 original size:91 final size:90
Alignment explanation
Indices: 474666--475015 Score: 513
Period size: 91 Copynumber: 3.9 Consensus size: 90
474656 TGATGGAATC
* * * *
474666 GAGCTAAGGTTGAACAAGTTCTTCTCATTATGAAATTCTTCTCCCTCGTTGGATGAGTTGTTCTC
1 GAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTC
*
474731 ATTATGAACTATCCACTAGAAATGTT
66 ATTATGAACTCTCCACT-GAAATGTT
* *
474757 GAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGACGGAGGAGTTCTTCTC
1 GAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTC
* *
474822 ATTATGAACTCCCCGCTGGAAATGTT
66 ATTATGAACTCTCCACT-GAAATGTT
* * *
474848 GATG-TAAGGTTGAACAAGTTCTTCTCATTATGAACATCTTCGCCCTCGTCGGATGAGTTCTTCT
1 GA-GCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCT
474912 CATTATGAACTCTCCACTGAAATGTT
65 CATTATGAACTCTCCACTGAAATGTT
* * * * *
474938 GAGTCAAGGTTGAACAAGTTCTTCTCATTATTAACTTTTTCTCTCTCGTTGGATGAGTTCTTCTC
1 GAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTC
475003 ATTATGAACTCTC
66 ATTATGAACTCTC
475016 TATCAGAAAT
Statistics
Matches: 233, Mismatches: 24, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
89 1 0.00
90 77 0.33
91 154 0.66
92 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.37
Consensus pattern (90 bp):
GAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTC
ATTATGAACTCTCCACTGAAATGTT
Found at i:475027 original size:181 final size:182
Alignment explanation
Indices: 474670--475013 Score: 548
Period size: 181 Copynumber: 1.9 Consensus size: 182
474660 GGAATCGAGC
* * *
474670 TAAGGTTGAACAAGTTCTTCTCATTATGAAATTCTTCTCCCTCGTTGGATGAGTTGTTCTCATTA
1 TAAGGTTGAACAAGTTCTTCTCATTATGAAATTCTTCGCCCTCGTCGGATGAGTTCTTCTCATTA
474735 TGAACTATCCACTAGAAATGTTGAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTC
66 TGAACTATCCACTAGAAATGTTGAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTC
* *
474800 CCTCGACGGAGGAGTTCTTCTCATTATGAACTCCCCGCTGGAAATGTTGATG
131 CCTCGACGGAGGAGTTCTTCTCATTATGAACTCCCAGCTAGAAATGTTGATG
474852 TAAGGTTGAACAAGTTCTTCTCATTATGAACA-TCTTCGCCCTCGTCGGATGAGTTCTTCTCATT
1 TAAGGTTGAACAAGTTCTTCTCATTATGAA-ATTCTTCGCCCTCGTCGGATGAGTTCTTCTCATT
* * * *
474916 ATGAACTCTCCACT-GAAATGTTGAGTCAAGGTTGAACAAGTTCTTCTCATTATTAACTTTTTCT
65 ATGAACTATCCACTAGAAATGTTGAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCT
* ** *
474980 CTCTCGTTGGATGAGTTCTTCTCATTATGAACTC
130 CCCTCGACGGAGGAGTTCTTCTCATTATGAACTC
475014 TCTATCAGAA
Statistics
Matches: 150, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
181 77 0.51
182 72 0.48
183 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (182 bp):
TAAGGTTGAACAAGTTCTTCTCATTATGAAATTCTTCGCCCTCGTCGGATGAGTTCTTCTCATTA
TGAACTATCCACTAGAAATGTTGAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTC
CCTCGACGGAGGAGTTCTTCTCATTATGAACTCCCAGCTAGAAATGTTGATG
Found at i:475964 original size:57 final size:57
Alignment explanation
Indices: 475836--476048 Score: 165
Period size: 58 Copynumber: 3.8 Consensus size: 57
475826 ATTTACATTT
* **
475836 ATCAAGAAACCCCTAAAAATAGGCTTAGTTTCTTTCAAAA-ATTCATTT--A-A-AA-C
1 ATCAAGAAACCCCTAAAAATAGGCTTAGTTTC--TAAAAATATTTTTTTGCAGATAATC
* * * * *
475889 ATTAAGAAACCCCCAAAAATCAGGCGTAGTTTCTAAAAATATTTTTTTTCA-ATTATC
1 ATCAAGAAACCCCTAAAAAT-AGGCTTAGTTTCTAAAAATATTTTTTTGCAGATAATC
* * * * * *
475946 ATCAAGGAACCCCTAAAAAATAGGCTTAACTTCCTTTAAAA-A-TTCTTTGGAGATAATC
1 ATCAAGAAACCCCT-AAAAATAGGCTT-AGTTTC-TAAAAATATTTTTTTGCAGATAATC
*
476004 ATCAAGAAACCCCTAAAAATTAGGCTTAGTTTCTAAAAATCTTTT
1 ATCAAGAAACCCCTAAAAA-TAGGCTTAGTTTCTAAAAATATTTT
476049 GGAAACATCC
Statistics
Matches: 123, Mismatches: 24, Indels: 21
0.73 0.14 0.12
Matches are distributed among these distances:
52 5 0.04
53 24 0.20
54 11 0.09
55 2 0.02
56 6 0.05
57 32 0.26
58 38 0.31
59 5 0.04
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.32
Consensus pattern (57 bp):
ATCAAGAAACCCCTAAAAATAGGCTTAGTTTCTAAAAATATTTTTTTGCAGATAATC
Found at i:476034 original size:115 final size:110
Alignment explanation
Indices: 475836--476048 Score: 277
Period size: 115 Copynumber: 1.9 Consensus size: 110
475826 ATTTACATTT
* * *
475836 ATCAAGAAACCCCTAAAAATAGGCTTAGTTTCTTTCAAAAATTCATTTAAAACATTAAGAAACCC
1 ATCAAGAAACCCCTAAAAATAGGCTTACTTCCTTTCAAAAATTCATTTAAAACATCAAGAAACCC
475901 CCAAAAATCAGGCGTAGTTTCTAAAAATATTTTTTTTCAATTATC
66 CCAAAAATCAGGCGTAGTTTCTAAAAATATTTTTTTTCAATTATC
*
475946 ATCAAGGAACCCCTAAAAAATAGGCTTAACTTCCTTT-AAAAATTC-TTTGGAGATAATCATCAA
1 ATCAAGAAACCCCT-AAAAATAGGCTT-ACTTCCTTTCAAAAATTCATTT--A-A-AA-CATCAA
* * * *
476009 GAAACCCCTAAAAATTAGGCTTAGTTTCTAAAAATCTTTT
59 GAAACCCCCAAAAATCAGGCGTAGTTTCTAAAAATATTTT
476049 GGAAACATCC
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
110 16 0.18
111 20 0.23
112 8 0.09
113 1 0.01
114 2 0.02
115 41 0.47
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.32
Consensus pattern (110 bp):
ATCAAGAAACCCCTAAAAATAGGCTTACTTCCTTTCAAAAATTCATTTAAAACATCAAGAAACCC
CCAAAAATCAGGCGTAGTTTCTAAAAATATTTTTTTTCAATTATC
Done.