Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008252.1 Hibiscus syriacus cultivar Beakdansim tig00110904_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2928487
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 13
Found at i:605363 original size:21 final size:20
Alignment explanation
Indices: 605325--605363 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
605315 TAATGGATGG
*
605325 TTGTTTTTGTATGCTGTTAT
1 TTGTTTTTGTATGATGTTAT
*
605345 TTGTTTTGTTTATGATGTT
1 TTGTTTT-TGTATGATGTT
605364 TAATGCCTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.10, C:0.03, G:0.21, T:0.67
Consensus pattern (20 bp):
TTGTTTTTGTATGATGTTAT
Found at i:609505 original size:20 final size:20
Alignment explanation
Indices: 609465--609503 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
609455 CATTACAGGA
*
609465 ATTTATGGCCTCGACAAAAG
1 ATTTATGGCCTCAACAAAAG
609485 ATTTCATGGCCTCAACAAA
1 ATTT-ATGGCCTCAACAAA
609504 GACCTTGATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (20 bp):
ATTTATGGCCTCAACAAAAG
Found at i:634694 original size:39 final size:39
Alignment explanation
Indices: 634596--634684 Score: 124
Period size: 39 Copynumber: 2.3 Consensus size: 39
634586 TCTATTACTT
* * * * *
634596 GTAAGACCTTACCGCAAGCTCCTCTACTTTATGCTCAGG
1 GTAAGTCCTTACTGCAGGCTCCTCGACTTTATACTCAGG
*
634635 GTAAGTCCTTACTGCAGGCTCCTCGACTTTGTACTCAGG
1 GTAAGTCCTTACTGCAGGCTCCTCGACTTTATACTCAGG
634674 GTAAGTCCTTA
1 GTAAGTCCTTA
634685 TCGTAGGCTC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.30
Consensus pattern (39 bp):
GTAAGTCCTTACTGCAGGCTCCTCGACTTTATACTCAGG
Found at i:634713 original size:36 final size:36
Alignment explanation
Indices: 634617--634721 Score: 113
Period size: 39 Copynumber: 2.8 Consensus size: 36
634607 CCGCAAGCTC
*
634617 CTCTACTTTATGCTCAGGGTAAGTCCTTACTGCAGG
1 CTCTACTTTGTGCTCAGGGTAAGTCCTTACTGCAGG
* *
634653 CTCCTCGACTTTGTACTCAGGGTAAGTCCTTA-TCGTAGG
1 CT-CT--ACTTTGTGCTCAGGGTAAGTCCTTACT-GCAGG
* * *
634692 CTCTACTTTGTGCACATGGTAAATCCTTAC
1 CTCTACTTTGTGCTCAGGGTAAGTCCTTAC
634722 CACTTGTCCT
Statistics
Matches: 57, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
36 23 0.40
37 2 0.04
38 3 0.05
39 29 0.51
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (36 bp):
CTCTACTTTGTGCTCAGGGTAAGTCCTTACTGCAGG
Found at i:640676 original size:39 final size:39
Alignment explanation
Indices: 640622--640794 Score: 163
Period size: 39 Copynumber: 4.4 Consensus size: 39
640612 TCTATGACTC
* * *
640622 GTAAGACCTTACCGCATGCTCCTCTGCTTTGTGCTCAGG
1 GTAAGTCCTTACCGCAGGCTCCTCTGCTTTGTTCTCAGG
* *
640661 GTAAGTCCTTACCGCAGGCTCCTCGGCTTCGTTCTCAGG
1 GTAAGTCCTTACCGCAGGCTCCTCTGCTTTGTTCTCAGG
* * * *
640700 GTAATTCCTTACCGTAGGCTCCTTCAT-TTTTTTTCTCAGG
1 GTAAGTCCTTACCGCAGGCTCC-TC-TGCTTTGTTCTCAGG
** ** *
640740 GTAAGTCCTTACTACAAACTCCTTTGCTTT-TTACAT-AGG
1 GTAAGTCCTTACCGCAGGCTCCTCTGCTTTGTT-C-TCAGG
640779 GTAAGTCCTTACCGCA
1 GTAAGTCCTTACCGCA
640795 TGTCCTTATG
Statistics
Matches: 108, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
38 3 0.03
39 76 0.70
40 29 0.27
ACGTcount: A:0.18, C:0.28, G:0.19, T:0.35
Consensus pattern (39 bp):
GTAAGTCCTTACCGCAGGCTCCTCTGCTTTGTTCTCAGG
Found at i:649863 original size:26 final size:27
Alignment explanation
Indices: 649790--649858 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
649780 TGAGATTTAA
*
649790 GAAA-ATGGGTTTTTAAGTGATTTGTT
1 GAAATATGAGTTTTTAAGTGATTTGTT
649816 GAAATATGAGTTTTTAAGTGATTTGTT
1 GAAATATGAGTTTTTAAGTGATTTGTT
649843 GAAATATGAGTTTTTA
1 GAAATATGAGTTTTTA
649859 TTGATATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
26 4 0.10
27 37 0.90
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.46
Consensus pattern (27 bp):
GAAATATGAGTTTTTAAGTGATTTGTT
Found at i:650915 original size:94 final size:93
Alignment explanation
Indices: 650791--650973 Score: 271
Period size: 92 Copynumber: 2.0 Consensus size: 93
650781 TTAAATACGT
*
650791 AACGATGCATTTATTCGCATGAAAGAATGCCATAAATGAAAAATGCATAACGGTGCATTTATCTG
1 AACGATGCATTTATTCGCATGAAAGAATGCCATAAATG-AAAATGCATAACGGTGCA-TAATC-G
*
650856 -CATGAAAGGATGAGATAAATGAAAATGCAC
63 ACATGAAAGGATGAGACAAATGAAAATGCAC
* *
650886 AACGATGCA-TTATTGGCATGAAAGGATGCCATAAATGAAAATGCATAACGGTGCATAATCGACA
1 AACGATGCATTTATTCGCATGAAAGAATGCCATAAATGAAAATGCATAACGGTGCATAATCGACA
**
650950 TGAAAGGATGCTACAAATGAAAAT
66 TGAAAGGATGAGACAAATGAAAAT
650974 ACATAACGGT
Statistics
Matches: 81, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
91 1 0.01
92 27 0.33
93 18 0.22
94 26 0.32
95 9 0.11
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.23
Consensus pattern (93 bp):
AACGATGCATTTATTCGCATGAAAGAATGCCATAAATGAAAATGCATAACGGTGCATAATCGACA
TGAAAGGATGAGACAAATGAAAATGCAC
Found at i:650982 original size:46 final size:45
Alignment explanation
Indices: 650790--650989 Score: 229
Period size: 46 Copynumber: 4.3 Consensus size: 45
650780 GTTAAATACG
* *
650790 TAACGATGCATTTATTCGCATGAAAGAATGCCATAAATGAAAAATGCA
1 TAACGGTGCA-TTA-TCGCATGAAAGGATGCCATAAATG-AAAATGCA
**
650838 TAACGGTGCATTTATCTGCATGAAAGGATGAGATAAATGAAAATGCA
1 TAACGGTGCA-TTATC-GCATGAAAGGATGCCATAAATGAAAATGCA
* * *
650885 CAACGATGCATTATTGGCATGAAAGGATGCCATAAATGAAAATGCA
1 TAACGGTGCATTA-TCGCATGAAAGGATGCCATAAATGAAAATGCA
* * * *
650931 TAACGGTGCATAATCGACATGAAAGGATGCTACAAATGAAAATACA
1 TAACGGTGCATTATCG-CATGAAAGGATGCCATAAATGAAAATGCA
*
650977 TAACGGTGTATTA
1 TAACGGTGCATTA
650990 ACGACATATA
Statistics
Matches: 131, Mismatches: 18, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
45 2 0.02
46 78 0.60
47 19 0.15
48 32 0.24
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.24
Consensus pattern (45 bp):
TAACGGTGCATTATCGCATGAAAGGATGCCATAAATGAAAATGCA
Found at i:655538 original size:8 final size:8
Alignment explanation
Indices: 655525--655567 Score: 77
Period size: 8 Copynumber: 5.4 Consensus size: 8
655515 ACCAATTAGT
655525 AAGAATGG
1 AAGAATGG
655533 AAGAATGG
1 AAGAATGG
655541 AAGAATGG
1 AAGAATGG
*
655549 AAGTATGG
1 AAGAATGG
655557 AAGAATGG
1 AAGAATGG
655565 AAG
1 AAG
655568 GGTATTTTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.37, T:0.14
Consensus pattern (8 bp):
AAGAATGG
Found at i:657015 original size:93 final size:93
Alignment explanation
Indices: 656807--657122 Score: 395
Period size: 93 Copynumber: 3.4 Consensus size: 93
656797 AATGCAAGTT
**
656807 AAATGCATAACAGTGCATTTATCGGCATGAAAGGATGCCATAAATAAAAATGCATAACGATGCAT
1 AAATGCATAACAGTGCATTTATCAACATGAAAGGATGCCATAAATAAAAATGCATAACGATGCAT
* * *
656872 TATCAGCATGAATGGATGCAATAAATGA
66 TATTAGAATGAAAGGATGCAATAAATGA
* * * * *
656900 AAATGAATGACAGTTCATTTATCAACATGAAAGGATGCCATAAATGAAAATGCATAACGATACAT
1 AAATGCATAACAGTGCATTTATCAACATGAAAGGATGCCATAAATAAAAATGCATAACGATGCA-
* *
656965 TTATTGGAATGAAAGGATGCCATAAATGA
65 TTATTAGAATGAAAGGATGCAATAAATGA
* * *
656994 AAATGTATAACGGTGCA-TTATCGACATGAAAGGATGCCATAAATAAAAATGCATAACGATGCAT
1 AAATGCATAACAGTGCATTTATCAACATGAAAGGATGCCATAAATAAAAATGCATAACGATGCAT
* * *
657058 TA-TCGACATGAAATGATGCTATAAATGA
66 TATTAGA-ATGAAAGGATGCAATAAATGA
* * * *
657086 AAATGCATAACGGTGCA-TAATCAGCATGAAAAGATGC
1 AAATGCATAACAGTGCATTTATCAACATGAAAGGATGC
657123 TACAAATGAA
Statistics
Matches: 194, Mismatches: 27, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
91 3 0.02
92 54 0.28
93 100 0.52
94 37 0.19
ACGTcount: A:0.44, C:0.13, G:0.19, T:0.24
Consensus pattern (93 bp):
AAATGCATAACAGTGCATTTATCAACATGAAAGGATGCCATAAATAAAAATGCATAACGATGCAT
TATTAGAATGAAAGGATGCAATAAATGA
Found at i:657142 original size:46 final size:46
Alignment explanation
Indices: 656807--657158 Score: 386
Period size: 46 Copynumber: 7.6 Consensus size: 46
656797 AATGCAAGTT
* * *
656807 AAATGCATAACAGTGCATTTATCGGCATGAAAGGATGCCATAAATAA
1 AAATGCATAACGGTGCA-TTATCGACATGAAAGGATGCCATAAATGA
* * *
656854 AAATGCATAACGATGCATTATC-AGCATGAATGGATGCAATAAATGA
1 AAATGCATAACGGTGCATTATCGA-CATGAAAGGATGCCATAAATGA
* * * * *
656900 AAATGAATGACAGTTCATTTATCAACATGAAAGGATGCCATAAATGA
1 AAATGCATAACGGTGCA-TTATCGACATGAAAGGATGCCATAAATGA
* * *
656947 AAATGCATAACGATACATTTATTGGA-ATGAAAGGATGCCATAAATGA
1 AAATGCATAACGGTGCA-TTA-TCGACATGAAAGGATGCCATAAATGA
* *
656994 AAATGTATAACGGTGCATTATCGACATGAAAGGATGCCATAAATAA
1 AAATGCATAACGGTGCATTATCGACATGAAAGGATGCCATAAATGA
* * *
657040 AAATGCATAACGATGCATTATCGACATGAAATGATGCTATAAATGA
1 AAATGCATAACGGTGCATTATCGACATGAAAGGATGCCATAAATGA
* * * *
657086 AAATGCATAACGGTGCATAATC-AGCATGAAAAGATGCTACAAATGA
1 AAATGCATAACGGTGCATTATCGA-CATGAAAGGATGCCATAAATGA
** * *
657132 AAATATATAACGGTGTATTAACGACAT
1 AAATGCATAACGGTGCATTATCGACAT
657159 ATAAAGTGCT
Statistics
Matches: 259, Mismatches: 39, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
45 4 0.02
46 160 0.62
47 92 0.36
48 3 0.01
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.24
Consensus pattern (46 bp):
AAATGCATAACGGTGCATTATCGACATGAAAGGATGCCATAAATGA
Found at i:658816 original size:45 final size:45
Alignment explanation
Indices: 658762--658935 Score: 330
Period size: 45 Copynumber: 3.9 Consensus size: 45
658752 CATTTATCCT
*
658762 ATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTGTTTC
1 ATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTGTTTC
658807 ATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTGTTTC
1 ATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTGTTTC
658852 ATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTGTTTC
1 ATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTGTTTC
*
658897 ATAAGCTCGTAAGCTTATTTTATCAATATACTTGCCATT
1 ATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATT
658936 ATTCCATAAG
Statistics
Matches: 127, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 127 1.00
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.43
Consensus pattern (45 bp):
ATAAGCTCGTAAGCTTATTTTATCAATATACTTACCATTTGTTTC
Found at i:677670 original size:43 final size:43
Alignment explanation
Indices: 677621--677883 Score: 278
Period size: 43 Copynumber: 6.1 Consensus size: 43
677611 TTAATGGACT
* * * *
677621 TTACCGTTTCCCAGGCTCCTTTTCTTTATGCAAGGATAATACC
1 TTACCATTTCCCAGGCTCCTTTTCTATGTGCAAGGATAAGACC
* * * *
677664 TTACCGTTTACCAGACT-ATTTTGCTATGTGCAAGGATAAGACC
1 TTACCATTTCCCAGGCTCCTTTT-CTATGTGCAAGGATAAGACC
** * * *
677707 TTACTGTTTCCCAGGCTCCTTTGCTTTGTACAAGGATAAGACC
1 TTACCATTTCCCAGGCTCCTTTTCTATGTGCAAGGATAAGACC
* * * **
677750 TTACCATTTCCCAAGCTCTTTTTCTATATAAAAGGATAAGACC
1 TTACCATTTCCCAGGCTCCTTTTCTATGTGCAAGGATAAGACC
* * *
677793 GTACCATTTCCCAGGCTCATTTGCTATGTGCAAGGATAAGACC
1 TTACCATTTCCCAGGCTCCTTTTCTATGTGCAAGGATAAGACC
* * *
677836 TTACCATTTCCCAGGCT-CTTTTGCTATGTGAAAGGGTAAGAAC
1 TTACCATTTCCCAGGCTCCTTTT-CTATGTGCAAGGATAAGACC
677879 TTACC
1 TTACC
677884 GTTTTTGCAG
Statistics
Matches: 183, Mismatches: 34, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
42 7 0.04
43 173 0.95
44 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.33
Consensus pattern (43 bp):
TTACCATTTCCCAGGCTCCTTTTCTATGTGCAAGGATAAGACC
Found at i:677728 original size:86 final size:86
Alignment explanation
Indices: 677621--677887 Score: 347
Period size: 86 Copynumber: 3.1 Consensus size: 86
677611 TTAATGGACT
* * * * * *
677621 TTACCGTTTCCCAGGCTCCTTTTCTTTATGCAAGGATAATACCTTACCGTTTACCAGACTATTTT
1 TTACCGTTTCCCAGGCTCCTTTGCTTTGTGCAAGGATAAGACCTTACCATTTCCCAGACTCTTTT
*
677686 GCTATGTGCAAGGATAAGACC
66 GCTATGTGAAAGGATAAGACC
* *
677707 TTACTGTTTCCCAGGCTCCTTTGCTTTGTACAAGGATAAGACCTTACCATTTCCCA-AGCTCTTT
1 TTACCGTTTCCCAGGCTCCTTTGCTTTGTGCAAGGATAAGACCTTACCATTTCCCAGA-CTCTTT
* * *
677771 TTCTATATAAAAGGATAAGACC
65 TGCTATGTGAAAGGATAAGACC
* * * * *
677793 GTACCATTTCCCAGGCTCATTTGCTATGTGCAAGGATAAGACCTTACCATTTCCCAGGCTCTTTT
1 TTACCGTTTCCCAGGCTCCTTTGCTTTGTGCAAGGATAAGACCTTACCATTTCCCAGACTCTTTT
* *
677858 GCTATGTGAAAGGGTAAGAAC
66 GCTATGTGAAAGGATAAGACC
677879 TTACCGTTT
1 TTACCGTTT
677888 TTGCAGGCCC
Statistics
Matches: 153, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
85 1 0.01
86 152 0.99
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (86 bp):
TTACCGTTTCCCAGGCTCCTTTGCTTTGTGCAAGGATAAGACCTTACCATTTCCCAGACTCTTTT
GCTATGTGAAAGGATAAGACC
Found at i:677851 original size:129 final size:129
Alignment explanation
Indices: 677621--677883 Score: 341
Period size: 129 Copynumber: 2.0 Consensus size: 129
677611 TTAATGGACT
* * * ** * * *
677621 TTACCGTTTCCCAGGCTCCTTTTCTTTATGCAAGGATAATACCTTACCGTTTACCAGACTATTTT
1 TTACCATTTCCCAAGCTCCTTTTCTATATAAAAGGATAAGACCGTACCATTTACCAGACTATTTT
** * *
677686 GCTATGTGCAAGGATAAGACCTTACTGTTTCCCAGGCTCCTTTGCTTTGT-ACAAGGATAAGACC
66 GCTATGTGCAAGGATAAGACCTTACCATTTCCCAGGCTCCTTTGCTATGTGA-AAGGATAAGAAC
* * *
677750 TTACCATTTCCCAAGCTCTTTTTCTATATAAAAGGATAAGACCGTACCATTTCCCAGGCTCA-TT
1 TTACCATTTCCCAAGCTCCTTTTCTATATAAAAGGATAAGACCGTACCATTTACCAGACT-ATTT
* *
677814 TGCTATGTGCAAGGATAAGACCTTACCATTTCCCAGGCTCTTTTGCTATGTGAAAGGGTAAGAAC
65 TGCTATGTGCAAGGATAAGACCTTACCATTTCCCAGGCTCCTTTGCTATGTGAAAGGATAAGAAC
677879 TTACC
1 TTACC
677884 GTTTTTGCAG
Statistics
Matches: 115, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
129 113 0.98
130 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.33
Consensus pattern (129 bp):
TTACCATTTCCCAAGCTCCTTTTCTATATAAAAGGATAAGACCGTACCATTTACCAGACTATTTT
GCTATGTGCAAGGATAAGACCTTACCATTTCCCAGGCTCCTTTGCTATGTGAAAGGATAAGAAC
Found at i:679937 original size:30 final size:29
Alignment explanation
Indices: 679872--679940 Score: 102
Period size: 29 Copynumber: 2.3 Consensus size: 29
679862 TAGGTCAACT
*
679872 TGTTGACTTTAACTGAGTCAACCCTTGAC
1 TGTTGACTTTAACCGAGTCAACCCTTGAC
**
679901 CATTGACTTTAACCGAGTCAACCCATTGAC
1 TGTTGACTTTAACCGAGTCAACCC-TTGAC
679931 TGTTGACTTT
1 TGTTGACTTT
679941 GATTTTGACC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 21 0.62
30 13 0.38
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.35
Consensus pattern (29 bp):
TGTTGACTTTAACCGAGTCAACCCTTGAC
Found at i:682213 original size:43 final size:43
Alignment explanation
Indices: 682162--682432 Score: 366
Period size: 43 Copynumber: 6.3 Consensus size: 43
682152 TTTTTTAATG
682162 GACCTTACCATTTCCCAGGCTCCTTTGCTATGTGCAAGGATAA
1 GACCTTACCATTTCCCAGGCTCCTTTGCTATGTGCAAGGATAA
* * *
682205 GATCTTACCGTTTCCCAGGCTCTTTTGCTATGTGCAAGG-TAA
1 GACCTTACCATTTCCCAGGCTCCTTTGCTATGTGCAAGGATAA
* * *
682247 GACCTAACCATTTCCCTGGCTCCTTTGTTATGTGCAAGGATAA
1 GACCTTACCATTTCCCAGGCTCCTTTGCTATGTGCAAGGATAA
* * *
682290 GACCCTTACCGTTTCCGAGGCTCTTTTGCTATGT-CTAAGGATAA
1 GA-CCTTACCATTTCCCAGGCTCCTTTGCTATGTGC-AAGGATAA
*
682334 GACCTTACCGTTTCCCAGGCTCCTTTGCTATGTGCAAGGATAA
1 GACCTTACCATTTCCCAGGCTCCTTTGCTATGTGCAAGGATAA
* * * * *
682377 GGCCTTACCATTTCCCAGGCACTTTTTCTATGTGCAAGGGTAA
1 GACCTTACCATTTCCCAGGCTCCTTTGCTATGTGCAAGGATAA
*
682420 GACCTTACTATTT
1 GACCTTACCATTT
682433 TTATAGGCCC
Statistics
Matches: 199, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
42 36 0.18
43 127 0.64
44 36 0.18
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (43 bp):
GACCTTACCATTTCCCAGGCTCCTTTGCTATGTGCAAGGATAA
Found at i:683899 original size:24 final size:24
Alignment explanation
Indices: 683833--683900 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
683823 GAGTCAAGGG
* *
683833 TTCTACGT-GTCATTCGGGA-TAA
1 TTCTACGTGGTCCTTCGGGACAAA
**
683855 TTCTACGTGGTCCTTTAGGACAAA
1 TTCTACGTGGTCCTTCGGGACAAA
683879 TTCTAC-TCGGTCCTTCGGGACA
1 TTCTACGT-GGTCCTTCGGGACA
683901 TATCTAAGTG
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
22 8 0.22
23 9 0.24
24 20 0.54
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.34
Consensus pattern (24 bp):
TTCTACGTGGTCCTTCGGGACAAA
Found at i:696670 original size:26 final size:25
Alignment explanation
Indices: 696640--696689 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
696630 TATCCCGGAT
696640 ATTTAATTTAAATT-AAATAAATAAAG
1 ATTTAA-TTAAATTGAAAT-AATAAAG
*
696666 ATTTAATTAATTTGAAATAATAAA
1 ATTTAATTAAATTGAAATAATAAA
696690 ATTCGTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (25 bp):
ATTTAATTAAATTGAAATAATAAAG
Found at i:697968 original size:24 final size:23
Alignment explanation
Indices: 697912--697968 Score: 55
Period size: 24 Copynumber: 2.4 Consensus size: 23
697902 CTACGCGGTC
*
697912 CTTCGG-GACATATCTACGTGGCA
1 CTTCGGTG-CATATCTACGTGACA
*
697935 CTAT-GATGCATATTCTACGTGACA
1 CT-TCGGTGCATA-TCTACGTGACA
697959 CTTCGGTGCA
1 CTTCGGTGCA
697969 AATTTTATGA
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
23 8 0.30
24 19 0.70
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (23 bp):
CTTCGGTGCATATCTACGTGACA
Found at i:698457 original size:19 final size:20
Alignment explanation
Indices: 698421--698460 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
698411 ATTTATATAT
**
698421 ATTTTCAAATATTTATTTTC
1 ATTTTCAAATATGAATTTTC
698441 ATTTT-AAATATGAATTTTC
1 ATTTTCAAATATGAATTTTC
698460 A
1 A
698461 ATATTAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (20 bp):
ATTTTCAAATATGAATTTTC
Found at i:698472 original size:33 final size:30
Alignment explanation
Indices: 698399--698472 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 30
698389 TTTTGTAACC
* *
698399 ATATTACTTTTCATTTATATATATTTTCAA
1 ATATTAATTTTCATTTAAATATATTTTCAA
*
698429 ATATTTATTTTCATTTTAAATATGAATTTTC-A
1 ATATTAATTTTCA-TTTAAATAT--ATTTTCAA
698461 ATATTAAATTTT
1 ATATT-AATTTT
698473 GTATAAGGGT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
30 11 0.31
31 8 0.22
32 6 0.17
33 11 0.31
ACGTcount: A:0.35, C:0.07, G:0.01, T:0.57
Consensus pattern (30 bp):
ATATTAATTTTCATTTAAATATATTTTCAA
Found at i:699518 original size:40 final size:40
Alignment explanation
Indices: 699463--699558 Score: 138
Period size: 40 Copynumber: 2.4 Consensus size: 40
699453 CTAGGTACGA
* * * *
699463 AGTACTGATATTGTTCTTACAGTATTGATATTGGATGAAC
1 AGTACCGATATTGTTCTTACAGTACTGATACTAGATGAAC
*
699503 AGTACCGATAATGTTCTTACAGTACTGATACTAGATGAAC
1 AGTACCGATATTGTTCTTACAGTACTGATACTAGATGAAC
*
699543 AATACCGATATTGTTC
1 AGTACCGATATTGTTC
699559 ACGTGGTGTC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (40 bp):
AGTACCGATATTGTTCTTACAGTACTGATACTAGATGAAC
Found at i:701673 original size:20 final size:19
Alignment explanation
Indices: 701631--701676 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
701621 TAATTTTCTC
* *
701631 TTGAAAACAAAATTAGATA
1 TTGAAAACAAAATGAAATA
*
701650 TTGAAAAGCAAAATGAAATT
1 TTGAAAA-CAAAATGAAATA
701670 TTGAAAA
1 TTGAAAA
701677 ATGATTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.57, C:0.04, G:0.13, T:0.26
Consensus pattern (19 bp):
TTGAAAACAAAATGAAATA
Found at i:702313 original size:13 final size:14
Alignment explanation
Indices: 702292--702324 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
702282 ACTTTAATTT
702292 AAATG-TTTA-TGC
1 AAATGATTTATTGC
702304 AAATGATTTATTGC
1 AAATGATTTATTGC
702318 AAATGAT
1 AAATGAT
702325 ATCTCTCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 5 0.26
13 4 0.21
14 10 0.53
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.39
Consensus pattern (14 bp):
AAATGATTTATTGC
Found at i:711567 original size:21 final size:20
Alignment explanation
Indices: 711530--711568 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
711520 GTTTATTTAA
*
711530 ATATTATAAAAGTAGTATCG
1 ATATTATAAAAGGAGTATCG
*
711550 ATATTCATTAAAGGAGTAT
1 ATATT-ATAAAAGGAGTAT
711569 TTATACTCCC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.44, C:0.05, G:0.15, T:0.36
Consensus pattern (20 bp):
ATATTATAAAAGGAGTATCG
Found at i:713410 original size:19 final size:19
Alignment explanation
Indices: 713386--713430 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
713376 AGTGATTCTC
* *
713386 TTGAAAACAAAATTAGATA
1 TTGAAAACAAAAATAAATA
* *
713405 TTGAAAAGAAAAATAAATT
1 TTGAAAACAAAAATAAATA
713424 TTGAAAA
1 TTGAAAA
713431 ATGATTTTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.60, C:0.02, G:0.11, T:0.27
Consensus pattern (19 bp):
TTGAAAACAAAAATAAATA
Found at i:717758 original size:15 final size:15
Alignment explanation
Indices: 717738--717770 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
717728 TTAGGAGTTT
717738 GGCTAACCCAAGATA
1 GGCTAACCCAAGATA
*
717753 GGCTAACCCGAGATA
1 GGCTAACCCAAGATA
717768 GGC
1 GGC
717771 CTTGGATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.33, C:0.27, G:0.27, T:0.12
Consensus pattern (15 bp):
GGCTAACCCAAGATA
Found at i:725317 original size:23 final size:24
Alignment explanation
Indices: 725263--725325 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 24
725253 GATATGTCAT
* *
725263 GAAGGGCCACGTAGAATTTGTCCC
1 GAAGGACCACGTAGAATTAGTCCC
* * *
725287 GAATGACCATGTAGAA-TAGTCTC
1 GAAGGACCACGTAGAATTAGTCCC
*
725310 GAAGGACCGCGTAGAA
1 GAAGGACCACGTAGAA
725326 CCCTCGACTC
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
23 18 0.58
24 13 0.42
ACGTcount: A:0.32, C:0.21, G:0.29, T:0.19
Consensus pattern (24 bp):
GAAGGACCACGTAGAATTAGTCCC
Found at i:725998 original size:21 final size:20
Alignment explanation
Indices: 725956--726005 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
725946 TTCAATTATG
725956 GTATCGATACCTCCACATCA
1 GTATCGATACCTCCACATCA
*
725976 GTATCGATACTACTTCA-ATCA
1 GTATCGATAC--CTCCACATCA
725997 GTATCGATA
1 GTATCGATA
726006 TTTTTCATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 10 0.37
21 13 0.48
22 4 0.15
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (20 bp):
GTATCGATACCTCCACATCA
Found at i:730462 original size:20 final size:19
Alignment explanation
Indices: 730420--730465 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
730410 AGTGATTCTC
* *
730420 TTGAAAACAAAATTAGATA
1 TTGAAAACAAAATGAAATA
*
730439 TTGAAAAGCAAAATGAAATT
1 TTGAAAA-CAAAATGAAATA
730459 TTGAAAA
1 TTGAAAA
730466 ATTATTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.57, C:0.04, G:0.13, T:0.26
Consensus pattern (19 bp):
TTGAAAACAAAATGAAATA
Found at i:742588 original size:23 final size:24
Alignment explanation
Indices: 742528--742590 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 24
742518 GATATGTCAT
*
742528 GAAGGGCCACGTAGAATTTGTCCC
1 GAAGGACCACGTAGAATTTGTCCC
* * *
742552 GAAAGACCATGTAGAA-TTGTCTC
1 GAAGGACCACGTAGAATTTGTCCC
*
742575 GAAGGACCGCGTAGAA
1 GAAGGACCACGTAGAA
742591 CCCTCGACTC
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 19 0.59
24 13 0.41
ACGTcount: A:0.32, C:0.21, G:0.29, T:0.19
Consensus pattern (24 bp):
GAAGGACCACGTAGAATTTGTCCC
Found at i:748273 original size:59 final size:59
Alignment explanation
Indices: 748148--748561 Score: 618
Period size: 59 Copynumber: 7.1 Consensus size: 59
748138 TATATTTCTC
* * * *
748148 ATACAGAAATTCATACACTTAGTATGAGTTTCTTATC-TTTTTGCACATAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCA
* *
748206 ATGCGAAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCA
* * *
748265 ATACGAAAATTCATACACTTAGTATGAATTTCTTATC-TTTTTGCACATC-AAGTGCCCC
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACA-CAAAGTGCCCA
* *
748323 GTACGGAAATTCATACACTTAGTATAAATTTCTTAACATTTTTGCACACAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCA
*
748382 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGTCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCA
* * *
748441 ACACGGAAATTCATACACTTAATATGAATTTCTTAACAGTTTTGCACACAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCA
** * * *
748500 ATGTGGAAATTCATACAATTTGTATGAATTTCTTAACATTTTTGCACACAAAGTTCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCA
748559 ATA
1 ATA
748562 ACTGTGACTA
Statistics
Matches: 322, Mismatches: 30, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
58 84 0.26
59 238 0.74
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.34
Consensus pattern (59 bp):
ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCA
Found at i:748285 original size:117 final size:118
Alignment explanation
Indices: 748148--748561 Score: 618
Period size: 117 Copynumber: 3.5 Consensus size: 118
748138 TATATTTCTC
* * * * * *
748148 ATACAGAAATTCATACACTTAGTATGAGTTTCTTATC-TTTTTGCACATAAAGTGCCCAATGCGA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCAATACGG
748212 AAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCA
66 AAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCA
* * **
748265 ATACGAAAATTCATACACTTAGTATGAATTTCTTATC-TTTTTGCACATC-AAGTGCCCCGTACG
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACA-CAAAGTGCCCAATACG
*
748328 GAAATTCATACACTTAGTATAAATTTCTTAACATTTTTGCACACAAAGTGCCCA
65 GAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCA
* *
748382 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGTCCAACACGG
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCAATACGG
* *
748447 AAATTCATACACTTAATATGAATTTCTTAACAGTTTTGCACACAAAGTGCCCA
66 AAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCA
** * * *
748500 ATGTGGAAATTCATACAATTTGTATGAATTTCTTAACATTTTTGCACACAAAGTTCCCAATA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCAATA
748562 ACTGTGACTA
Statistics
Matches: 269, Mismatches: 25, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
117 143 0.53
118 126 0.47
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.34
Consensus pattern (118 bp):
ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCAATACGG
AAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCA
Found at i:748942 original size:20 final size:20
Alignment explanation
Indices: 748912--748972 Score: 70
Period size: 22 Copynumber: 3.0 Consensus size: 20
748902 AGATTCGATG
748912 TTACC-TGGTATCGATACCC
1 TTACCATGGTATCGATACCC
748931 TTACCATGGTATCGATACTACC
1 TTACCATGGTATCGATAC--CC
* * *
748953 ATACTATGGTACCGATACCC
1 TTACCATGGTATCGATACCC
748973 CCTTCCAGTA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 5 0.14
20 14 0.39
22 17 0.47
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.30
Consensus pattern (20 bp):
TTACCATGGTATCGATACCC
Found at i:748954 original size:17 final size:19
Alignment explanation
Indices: 748912--748948 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
748902 AGATTCGATG
748912 TTACC-TGGTATCGATACCC
1 TTACCATGGTATCGATA-CC
748931 TTACCATGGTATCGATAC
1 TTACCATGGTATCGATAC
748949 TACCATACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.32
Consensus pattern (19 bp):
TTACCATGGTATCGATACC
Found at i:748995 original size:95 final size:95
Alignment explanation
Indices: 748825--749047 Score: 374
Period size: 95 Copynumber: 2.3 Consensus size: 95
748815 GGCTCTTCAA
* * * * **
748825 TATCGATACCCCTACCATGGTATCGATACTACTATACTATGGTGCTGATACCCCCTTCTGGTATC
1 TATCGATACCCTTACCATGGTATCGATACTACCATACTATGGTACCGATACCCCCTTCCAGTATC
* *
748890 GATACTAATTTTAGATTCGATGTTACCTGG
66 GAAACCAATTTTAGATTCGATGTTACCTGG
748920 TATCGATACCCTTACCATGGTATCGATACTACCATACTATGGTACCGATACCCCCTTCCAGTATC
1 TATCGATACCCTTACCATGGTATCGATACTACCATACTATGGTACCGATACCCCCTTCCAGTATC
748985 GAAACCAATTTTAGATTCGATGTTACCTGG
66 GAAACCAATTTTAGATTCGATGTTACCTGG
749015 TATCGATACCCTTACCATGGTATCGATACTACC
1 TATCGATACCCTTACCATGGTATCGATACTACC
749048 TCTTCGGTAT
Statistics
Matches: 120, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
95 120 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.32
Consensus pattern (95 bp):
TATCGATACCCTTACCATGGTATCGATACTACCATACTATGGTACCGATACCCCCTTCCAGTATC
GAAACCAATTTTAGATTCGATGTTACCTGG
Found at i:755217 original size:84 final size:84
Alignment explanation
Indices: 755118--755286 Score: 320
Period size: 84 Copynumber: 2.0 Consensus size: 84
755108 CCTATAGTTC
* *
755118 ACGCCAAGAGGTATTGCTACAACAACAGTTTAATAAACCAAGGGTTGTAGTTAACGCTGAGGAGT
1 ACGCCAAGAGGTATTGCTACAACAACAGTTTAACAAACCAAGGGTTGTAGTTAACGCTAAGGAGT
755183 ATTGCCATAGCAACCGTCT
66 ATTGCCATAGCAACCGTCT
755202 ACGCCAAGAGGTATTGCTACAACAACAGTTTAACAAACCAAGGGTTGTAGTTAACGCTAAGGAGT
1 ACGCCAAGAGGTATTGCTACAACAACAGTTTAACAAACCAAGGGTTGTAGTTAACGCTAAGGAGT
755267 ATTGCCATAGCAACCGTCT
66 ATTGCCATAGCAACCGTCT
755286 A
1 A
755287 AGAATACCTA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 83 1.00
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (84 bp):
ACGCCAAGAGGTATTGCTACAACAACAGTTTAACAAACCAAGGGTTGTAGTTAACGCTAAGGAGT
ATTGCCATAGCAACCGTCT
Found at i:761940 original size:83 final size:79
Alignment explanation
Indices: 761833--761986 Score: 186
Period size: 83 Copynumber: 1.9 Consensus size: 79
761823 TAGTAAGTAG
* *
761833 ACATTAAAAGAATGTAATTTAGATTACAACTCTTTTAATTGGTATATATATAATTCGAAATAATT
1 ACATTAAAAGAATATAATTCAGATTACAACTC-TTTAA-T-GTATAT-T-TAATT-GAAATAATT
761898 AAATAA-ATTTTTTAAATAA
60 AAATAATATTTTTTAAATAA
* * * *
761917 ACATT-AAAGATTATAATTCAGATTATAAGTCTTTAATGTATATTTAATTGAATTAATTAAATAA
1 ACATTAAAAGAATATAATTCAGATTACAACTCTTTAATGTATATTTAATTGAAATAATTAAATAA
761981 TATTTT
66 TATTTT
761987 ATTTATTAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
77 14 0.22
78 10 0.16
79 1 0.02
80 6 0.10
81 1 0.02
82 5 0.08
83 21 0.33
84 5 0.08
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (79 bp):
ACATTAAAAGAATATAATTCAGATTACAACTCTTTAATGTATATTTAATTGAAATAATTAAATAA
TATTTTTTAAATAA
Found at i:767060 original size:13 final size:13
Alignment explanation
Indices: 767042--767067 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
767032 TGAGGCAAGG
767042 TTTATCTGAAGAA
1 TTTATCTGAAGAA
767055 TTTATCTGAAGAA
1 TTTATCTGAAGAA
767068 GTCTGAAGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
TTTATCTGAAGAA
Found at i:767377 original size:19 final size:20
Alignment explanation
Indices: 767353--767393 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
767343 GAAATATTTT
767353 TATGAATAATATT-ATACTG
1 TATGAATAATATTGATACTG
*
767372 TATGAATAGTATTGATACTG
1 TATGAATAATATTGATACTG
767392 TA
1 TA
767394 CAAATAGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.39, C:0.05, G:0.15, T:0.41
Consensus pattern (20 bp):
TATGAATAATATTGATACTG
Found at i:767399 original size:20 final size:19
Alignment explanation
Indices: 767357--767402 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
767347 TATTTTTATG
* **
767357 AATAATATTATACTGTATG
1 AATAGTATTATACTGTACA
767376 AATAGTATTGATACTGTACA
1 AATAGTATT-ATACTGTACA
767396 AATAGTA
1 AATAGTA
767403 CCCGAGCACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (19 bp):
AATAGTATTATACTGTACA
Found at i:769719 original size:47 final size:48
Alignment explanation
Indices: 769639--769731 Score: 118
Period size: 47 Copynumber: 2.0 Consensus size: 48
769629 CACTACAGCT
* * * *
769639 CGTATAAATTGCACCGAAGTGCCACGTAGAATTTGTCC-TGAAGGACTG
1 CGTAGAAATTGCACCAAAGTGCCACATAAAATTTGTCCAT-AAGGACTG
*
769687 CGTAGAAA-TGCACCAAAGTGCCATATAAAATTTGTCCATAAGGAC
1 CGTAGAAATTGCACCAAAGTGCCACATAAAATTTGTCCATAAGGAC
769732 CACATAGAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
47 31 0.79
48 8 0.21
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (48 bp):
CGTAGAAATTGCACCAAAGTGCCACATAAAATTTGTCCATAAGGACTG
Found at i:769740 original size:47 final size:47
Alignment explanation
Indices: 769648--769742 Score: 111
Period size: 47 Copynumber: 2.0 Consensus size: 47
769638 TCGTATAAAT
* * * ** *
769648 TGCACCGAAGTGCCACGTAGAATTTGTCCTGAAGGACTGCGTAGAAA
1 TGCACCAAAGTGCCACATAAAATTTGTCCTGAAGGACCACATAGAAA
*
769695 TGCACCAAAGTGCCATATAAAATTTGTCCAT-AAGGACCACATAGAAA
1 TGCACCAAAGTGCCACATAAAATTTGTCC-TGAAGGACCACATAGAAA
769742 T
1 T
769743 TCCTTAAGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
47 39 0.98
48 1 0.03
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (47 bp):
TGCACCAAAGTGCCACATAAAATTTGTCCTGAAGGACCACATAGAAA
Found at i:771086 original size:20 final size:20
Alignment explanation
Indices: 771061--771108 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
771051 ACACAATACA
771061 TTTCAATTAATTCATTCACT
1 TTTCAATTAATTCATTCACT
771081 TTTCAATTAATTCATTCACT
1 TTTCAATTAATTCATTCACT
771101 TTTCAATT
1 TTTCAATT
771109 TATTTAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.29, C:0.19, G:0.00, T:0.52
Consensus pattern (20 bp):
TTTCAATTAATTCATTCACT
Found at i:771357 original size:31 final size:31
Alignment explanation
Indices: 771322--771387 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
771312 CGTGAGCAAG
771322 CAACTGCAGTGCTTTCCCACCGTCAACAGAC
1 CAACTGCAGTGCTTTCCCACCGTCAACAGAC
*
771353 CAACTGCAGTGCTTTCCCACCGTCAACAGAT
1 CAACTGCAGTGCTTTCCCACCGTCAACAGAC
771384 CAAC
1 CAAC
771388 CTTCCTTAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.27, C:0.38, G:0.15, T:0.20
Consensus pattern (31 bp):
CAACTGCAGTGCTTTCCCACCGTCAACAGAC
Found at i:773553 original size:59 final size:59
Alignment explanation
Indices: 773424--773706 Score: 487
Period size: 59 Copynumber: 4.8 Consensus size: 59
773414 TATATTTCCC
* * * *
773424 ATACGAAAATTCATACACTTAGTATGAATTTCTTATC-TTTTTGCACATAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTACACACAAAGTGCCCA
*
773482 ATACGGAAATTCATATACTTAGTATGAATTTCTTAACATTTTTACACACAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTACACACAAAGTGCCCA
*
773541 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTGCACACAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTACACACAAAGTGCCCA
*
773600 ATGCGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTACACACAAAGTGCCCA
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTACACACAAAGTGCCCA
773659 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTGTACAC
1 ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTT-TACAC
773707 TTAGTGCCAT
Statistics
Matches: 213, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
58 34 0.16
59 174 0.82
60 5 0.02
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (59 bp):
ATACGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTTACACACAAAGTGCCCA
Found at i:774168 original size:17 final size:19
Alignment explanation
Indices: 774126--774162 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
774116 AGATTCGATG
774126 TTACC-TGGTATCGATACCC
1 TTACCATGGTATCGATA-CC
774145 TTACCATGGTATCGATAC
1 TTACCATGGTATCGATAC
774163 TACCATACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.32
Consensus pattern (19 bp):
TTACCATGGTATCGATACC
Found at i:774201 original size:95 final size:95
Alignment explanation
Indices: 774038--774261 Score: 315
Period size: 95 Copynumber: 2.4 Consensus size: 95
774028 TGGCTCTTCA
* * * *
774038 GTATCGATACCCCTACCATGGTATCGATACTACTATATTATGGTACCGATGTCCCCTTCTGGTAT
1 GTATCGATACCCTTACCATGGTATCGATACTACCATACTATGGTACCGATGACCCCTTCTGGTAT
*
774103 CGATACCAATTTTAGATTCGATGTTACCTG
66 CGATACCAATTTCAGATTCGATGTTACCTG
*
774133 GTATCGATACCCTTACCATGGTATCGATACTACCATACTATGGTACTGAT-ACCTCCTTCTGGTA
1 GTATCGATACCCTTACCATGGTATCGATACTACCATACTATGGTACCGATGACC-CCTTCTGGTA
* * *
774197 TCGATACCAATTTCAGATTTGATGTTGCTTG
65 TCGATACCAATTTCAGATTCGATGTTACCTG
** * *
774228 GTATTAATACCCTTACCATAGTATTGATACTACC
1 GTATCGATACCCTTACCATGGTATCGATACTACC
774262 TCGTCGATAT
Statistics
Matches: 115, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
94 2 0.02
95 113 0.98
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (95 bp):
GTATCGATACCCTTACCATGGTATCGATACTACCATACTATGGTACCGATGACCCCTTCTGGTAT
CGATACCAATTTCAGATTCGATGTTACCTG
Found at i:775523 original size:11 final size:11
Alignment explanation
Indices: 775507--775533 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
775497 ATCTAGGGCG
775507 CAAACCCTTTA
1 CAAACCCTTTA
775518 CAAACCCTTTA
1 CAAACCCTTTA
775529 CAAAC
1 CAAAC
775534 TGATCACCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (11 bp):
CAAACCCTTTA
Found at i:776829 original size:24 final size:24
Alignment explanation
Indices: 776801--776923 Score: 114
Period size: 24 Copynumber: 5.2 Consensus size: 24
776791 TTGCTCAAAA
*
776801 AATTTGCACCGAAGTGCCACTTAG
1 AATTTGCACCGAAGTGCCACGTAG
*
776825 AATTTGCACCGAAGTGTCACGTAG
1 AATTTGCACCGAAGTGCCACGTAG
* *
776849 AATTTACACCAAAGTGCCACGTAG
1 AATTTGCACCGAAGTGCCACGTAG
776873 ATATGTT-CA--GAA-TGACCACGTAG
1 A-AT-TTGCACCGAAGTG-CCACGTAG
*
776896 AATTTGTC-CCGAAAG-ACCACGTAG
1 AATTTG-CACCG-AAGTGCCACGTAG
776920 AATT
1 AATT
776924 ATCCTGAAGA
Statistics
Matches: 83, Mismatches: 7, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
21 2 0.02
22 4 0.05
23 12 0.14
24 57 0.69
25 6 0.07
26 2 0.02
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.24
Consensus pattern (24 bp):
AATTTGCACCGAAGTGCCACGTAG
Found at i:777111 original size:30 final size:30
Alignment explanation
Indices: 777067--777126 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
777057 AAAAATTTTG
* * * *
777067 CATAGAGCATTTTCACGTATAACACATTCA
1 CATAAAGCACTTTCACATAGAACACATTCA
777097 CATAAAGCACTTTCACATAGAACACATTCA
1 CATAAAGCACTTTCACATAGAACACATTCA
777127 TATGTTAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.25, G:0.08, T:0.27
Consensus pattern (30 bp):
CATAAAGCACTTTCACATAGAACACATTCA
Found at i:777126 original size:15 final size:14
Alignment explanation
Indices: 777087--777126 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
777077 TTTCACGTAT
777087 AACACATTCACATA
1 AACACATTCACATA
*
777101 AAGCACTTTCACATA
1 AA-CACATTCACATA
777116 GAACACATTCA
1 -AACACATTCA
777127 TATGTTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 2 0.09
15 18 0.82
16 2 0.09
ACGTcount: A:0.45, C:0.28, G:0.05, T:0.23
Consensus pattern (14 bp):
AACACATTCACATA
Found at i:782949 original size:3 final size:3
Alignment explanation
Indices: 782941--782972 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
782931 AATTTTCCAA
782941 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
782973 AGATCATAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:789485 original size:20 final size:20
Alignment explanation
Indices: 789447--789485 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
789437 GACAAAGATA
* *
789447 AACATATCATAAAGGCATAG
1 AACATATCACAAAGACATAG
*
789467 AACATATCACAGAGACATA
1 AACATATCACAAAGACATA
789486 ATTATTCTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.51, C:0.18, G:0.13, T:0.18
Consensus pattern (20 bp):
AACATATCACAAAGACATAG
Found at i:792411 original size:2 final size:2
Alignment explanation
Indices: 792406--792452 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
792396 TTTTTAAAAC
792406 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
792448 AT AT A
1 AT AT A
792453 CCCCCATCCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:792676 original size:24 final size:24
Alignment explanation
Indices: 792649--792724 Score: 82
Period size: 24 Copynumber: 3.2 Consensus size: 24
792639 TATATCAAAA
792649 ATCAAAACATAAAT-CAGGTCAAGT
1 ATCAAAACA-AAATCCAGGTCAAGT
* *
792673 ATCATATCAAAATCCAGGTCAAGT
1 ATCAAAACAAAATCCAGGTCAAGT
* * * *
792697 ATCAGATCAGAATCCAAGTCAAGT
1 ATCAAAACAAAATCCAGGTCAAGT
792721 ATCA
1 ATCA
792725 GATCAGAATC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.09
24 42 0.91
ACGTcount: A:0.45, C:0.20, G:0.13, T:0.22
Consensus pattern (24 bp):
ATCAAAACAAAATCCAGGTCAAGT
Found at i:792725 original size:24 final size:24
Alignment explanation
Indices: 792666--792799 Score: 162
Period size: 24 Copynumber: 5.6 Consensus size: 24
792656 CATAAATCAG
* * *
792666 GTCAAGTATCATATCAAAATCCAG
1 GTCAAGTATCAGATCAGAATCCAA
792690 GTCAAGTATCAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAA
* *
792714 GTCAAGTATCAGATCAGAATCTAT
1 GTCAAGTATCAGATCAGAATCCAA
*
792738 GTC-AGATATCAGATCAGAATCCAT
1 GTCAAG-TATCAGATCAGAATCCAA
*
792762 GTCAAGTATCAGATCAGAATTCAA
1 GTCAAGTATCAGATCAGAATCCAA
* **
792786 ATCAAAAATCAGAT
1 GTCAAGTATCAGAT
792800 AAAATATTCA
Statistics
Matches: 97, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
23 2 0.02
24 93 0.96
25 2 0.02
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.25
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAA
Found at i:795283 original size:18 final size:18
Alignment explanation
Indices: 795260--795304 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
795250 AACGGTCAAT
795260 GGGTCGGGTCAACGGGTC
1 GGGTCGGGTCAACGGGTC
795278 GGGTCGGGTCAACGGGTC
1 GGGTCGGGTCAACGGGTC
795296 GGGTCGGGT
1 GGGTCGGGT
795305 TGTGACCGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.09, C:0.20, G:0.53, T:0.18
Consensus pattern (18 bp):
GGGTCGGGTCAACGGGTC
Found at i:795300 original size:13 final size:13
Alignment explanation
Indices: 795253--795282 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
795243 GTTGGTCAAC
*
795253 GGTCAATGGGTCG
1 GGTCAACGGGTCG
795266 GGTCAACGGGTCG
1 GGTCAACGGGTCG
795279 GGTC
1 GGTC
795283 GGGTCAACGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.20, G:0.47, T:0.20
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:796209 original size:8 final size:9
Alignment explanation
Indices: 796187--796211 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
796177 TTTATAAGTG
796187 ATTTTTATT
1 ATTTTTATT
796196 ATTTTTATT
1 ATTTTTATT
796205 ATTTTTA
1 ATTTTTA
796212 AACAAATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
ATTTTTATT
Found at i:797413 original size:24 final size:25
Alignment explanation
Indices: 797386--797454 Score: 67
Period size: 24 Copynumber: 2.9 Consensus size: 25
797376 AACATCAAAT
797386 ACAATAA-AATAATATTATTTATTA
1 ACAATAAGAATAATATTATTTATTA
* *
797410 ACAA-AATAATATTATTATTT-TTA
1 ACAATAAGAATAATATTATTTATTA
797433 A-AATATTAGAATAAT-TTATTTA
1 ACAATA--AGAATAATATTATTTA
797455 ATATTATTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
22 2 0.05
23 7 0.19
24 22 0.59
25 6 0.16
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (25 bp):
ACAATAAGAATAATATTATTTATTA
Found at i:797532 original size:30 final size:30
Alignment explanation
Indices: 797480--797558 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
797470 ATATTACTAT
*
797480 TAAAATATTATATCTA-TA-ATTTTA-TAAA
1 TAAAA-ATTATATTTATTATATTTTATTAAA
797508 TAAAAAATTATGA-TTATTATATTTTATTAAA
1 T-AAAAATTAT-ATTTATTATATTTTATTAAA
*
797539 TATAAATTATATTTATTATA
1 TAAAAATTATATTTATTATA
797559 ATAAGAATAA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
28 8 0.19
29 8 0.19
30 22 0.51
31 5 0.12
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (30 bp):
TAAAAATTATATTTATTATATTTTATTAAA
Found at i:797571 original size:21 final size:20
Alignment explanation
Indices: 797530--797571 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
797520 ATTATTATAT
*
797530 TTTATTAAATATAAATTATA
1 TTTATTAAATATAAATAATA
797550 TTTATTATAATA-AGAATAATA
1 TTTATTA-AATATA-AATAATA
797571 T
1 T
797572 ATCATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
TTTATTAAATATAAATAATA
Found at i:797995 original size:198 final size:198
Alignment explanation
Indices: 797648--798080 Score: 549
Period size: 198 Copynumber: 2.2 Consensus size: 198
797638 CACATATGTT
*
797648 ACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATCAGTT
1 ACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTAGAAATATCAGTT
* *
797713 TTATGAGAGAATAGGTCAACATAATGTATCAACACAAATTTAAAAAGTGTCTATACATTTTGTCC
66 TTATGAGAAAATAGGTCAACATAATGTATCAACACAAATTTAAAAAGTGTCGATACATTTTGTCC
*
797778 AGAATGAATGCCAAACGAGGTGCACACATAAAGTGTCGATACATTTATTAAA-AGTATCGATCCC
131 AAAATGAATGCCAAACGAGGTGCACACATAAAGTGTCGATACATTTA--AAATAGTATCGATCCC
797842 -AAAA
194 AAAAA
* * * *
797846 ACATCGAAACTGATAATTA-CATGTAATAGGTAAATTTACAATGTACCCGGTAGAAATATACCGG
1 ACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTAGAAATAT--CAG
* * * * * ** *
797910 TTTTATGATAAAATAGGTCTATATAATGTATCGACAC-ATTTTAAGTTTA-TGTCGATA-TTTTT
64 TTTTATGAGAAAATAGGTCAACATAATGTATCAACACAAATTTAA--AAAGTGTCGATACATTTT
* * * *
797972 TTCCAAAATGAATGTCC-AACGAGGTGCACATATAAAGTGTCGATATATTTAAAATTGTATCGAT
127 GTCCAAAATGAATG-CCAAACGAGGTGCACACATAAAGTGTCGATACATTTAAAATAGTATCGAT
798036 CCCAAAAA
191 CCCAAAAA
* *
798044 ATATCG-AACCGATTATTATAATGTAATAGGTAAATTT
1 ACATCGAAACCGATAATTATAATGTAATAGGTAAATTT
798081 GTAATGTTTA
Statistics
Matches: 203, Mismatches: 24, Indels: 16
0.84 0.10 0.07
Matches are distributed among these distances:
196 3 0.01
197 58 0.29
198 98 0.48
199 43 0.21
200 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (198 bp):
ACATCGAAACCGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTAGAAATATCAGTT
TTATGAGAAAATAGGTCAACATAATGTATCAACACAAATTTAAAAAGTGTCGATACATTTTGTCC
AAAATGAATGCCAAACGAGGTGCACACATAAAGTGTCGATACATTTAAAATAGTATCGATCCCAA
AAA
Found at i:798124 original size:24 final size:23
Alignment explanation
Indices: 798087--798142 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 23
798077 ATTTGTAATG
798087 TTTATT-TTAAAAATAATATTAT
1 TTTATTGTTAAAAATAATATTAT
798109 TATT-TTGTTAATAAATAATATTAT
1 T-TTATTGTTAA-AAATAATATTAT
798133 TTTATTGTTA
1 TTTATTGTTA
798143 TCTTTGGTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
22 3 0.10
23 8 0.27
24 19 0.63
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (23 bp):
TTTATTGTTAAAAATAATATTAT
Found at i:798342 original size:23 final size:23
Alignment explanation
Indices: 798292--798336 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
798282 AACCTATTTT
* *
798292 ATTATATAAGCGTTACATATTAC
1 ATTATATAAGCGGTACATAATAC
*
798315 ATTATATAAGCGGTACCTAATA
1 ATTATATAAGCGGTACATAATA
798337 TGTTATTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (23 bp):
ATTATATAAGCGGTACATAATAC
Found at i:799905 original size:60 final size:58
Alignment explanation
Indices: 799758--799916 Score: 176
Period size: 60 Copynumber: 2.7 Consensus size: 58
799748 TCGGAAGATC
* * * *
799758 TAAAAGTTTAGGGACCAATTTAGAATGAGATTCATAGTGTGGGATGAAATTGAAATGT
1 TAAAAGTTTAAGGACTAATTTAGAATGAGATTCATAGTTTGGGATGAAATAGAAATGT
* * *
799816 TCAAAAGTTTAAGGAATATTTTAGAATGAGATTCATAGTTTGAGGATGTAATA-AGAATGCT
1 T-AAAAGTTTAAGGACTAATTTAGAATGAGATTCATAGTTTG-GGATGAAATAGA-AATG-T
* * **
799877 TAAAAATTTAAGGACTAATTTAAAATGAGGGTCATAGTTT
1 TAAAAGTTTAAGGACTAATTTAGAATGAGATTCATAGTTT
799917 AGAGATATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
58 1 0.01
59 36 0.43
60 45 0.54
61 2 0.02
ACGTcount: A:0.40, C:0.05, G:0.22, T:0.33
Consensus pattern (58 bp):
TAAAAGTTTAAGGACTAATTTAGAATGAGATTCATAGTTTGGGATGAAATAGAAATGT
Found at i:801555 original size:18 final size:18
Alignment explanation
Indices: 801532--801576 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
801522 AATATTCCCA
*
801532 GTAATCTTATTCTCACCG
1 GTAATCTTATTCCCACCG
* *
801550 GTAATCCTATTCCCACTG
1 GTAATCTTATTCCCACCG
801568 GTAATCTTA
1 GTAATCTTA
801577 CATTCCGTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.11, T:0.38
Consensus pattern (18 bp):
GTAATCTTATTCCCACCG
Found at i:803857 original size:16 final size:16
Alignment explanation
Indices: 803836--803867 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
803826 TTAAATATAT
803836 TGGAATATTAAACAGG
1 TGGAATATTAAACAGG
803852 TGGAATATTAAACAGG
1 TGGAATATTAAACAGG
803868 GTCGAATTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (16 bp):
TGGAATATTAAACAGG
Found at i:807274 original size:20 final size:20
Alignment explanation
Indices: 807246--807283 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
807236 TTCCACCACC
*
807246 TGCAACTATATGCTCCTAAA
1 TGCAACTATATGATCCTAAA
*
807266 TGCATCTATATGATCCTA
1 TGCAACTATATGATCCTA
807284 TATGAGCTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (20 bp):
TGCAACTATATGATCCTAAA
Found at i:817526 original size:52 final size:51
Alignment explanation
Indices: 817445--817609 Score: 269
Period size: 52 Copynumber: 3.2 Consensus size: 51
817435 CTCAACTGCC
817445 CGATGTTAAAAGAGATGGACATTTTTTCCTATTGTGATGCTTAACAGTTGCA
1 CGATGTTAAAAGAGATGGACA-TTTTTCCTATTGTGATGCTTAACAGTTGCA
* *
817497 CGATGTTAAAAGAGATTGACATTTATTCCTATTGTGATACTTAACAGTTGCA
1 CGATGTTAAAAGAGATGGACATTT-TTCCTATTGTGATGCTTAACAGTTGCA
817549 CGATGTTAAAAGAGATGGACATGTTTTCCTATTGTGATGCTTAACAGTTGCGA
1 CGATGTTAAAAGAGATGGACAT-TTTTCCTATTGTGATGCTTAACAGTTGC-A
817602 -GATGTTAA
1 CGATGTTAA
817610 TGGACATTTT
Statistics
Matches: 106, Mismatches: 4, Indels: 6
0.91 0.03 0.05
Matches are distributed among these distances:
51 3 0.03
52 100 0.94
53 3 0.03
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (51 bp):
CGATGTTAAAAGAGATGGACATTTTTCCTATTGTGATGCTTAACAGTTGCA
Found at i:817630 original size:46 final size:48
Alignment explanation
Indices: 817457--817631 Score: 212
Period size: 52 Copynumber: 3.5 Consensus size: 48
817447 ATGTTAAAAG
817457 AGATGGACATTTTTTCCTATTGTGATGCTTAACAGTTGCACGATGTTAAAA
1 AGATGGACATTTTTTCCTATTGTGATGCTTAACAGTTGCACGATGTT---A
* * *
817508 GAGATTGACATTTATTCCTATTGTGATACTTAACAGTTGCACGATGTTAAAA
1 -AGATGGACATTTTTTCCTATTGTGATGCTTAACAGTTGCACGATGTT---A
*
817560 GAGATGGACATGTTTTCCTATTGTGATGCTTAACAGTTGCGA-GATGTT-
1 -AGATGGACATTTTTTCCTATTGTGATGCTTAACAGTTGC-ACGATGTTA
817608 A-ATGGACATTTTTTCCTATTGTGA
1 AGATGGACATTTTTTCCTATTGTGA
817632 CCAATGCCCA
Statistics
Matches: 114, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
46 22 0.19
47 1 0.01
52 90 0.79
53 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (48 bp):
AGATGGACATTTTTTCCTATTGTGATGCTTAACAGTTGCACGATGTTA
Found at i:825458 original size:3 final size:3
Alignment explanation
Indices: 825450--825481 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
825440 GTAAACAACC
*
825450 TCT TCT TCT TCC TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
825482 AATGATGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (3 bp):
TCT
Found at i:825535 original size:3 final size:3
Alignment explanation
Indices: 825523--825605 Score: 143
Period size: 3 Copynumber: 28.3 Consensus size: 3
825513 GTTTAGTTCA
*
825523 CTT C-T CTT CTT CTT CTT CTT ATT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
825570 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C-T CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
825606 CTCCTCGCAA
Statistics
Matches: 76, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
2 4 0.05
3 72 0.95
ACGTcount: A:0.01, C:0.34, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:825931 original size:122 final size:122
Alignment explanation
Indices: 825686--825928 Score: 398
Period size: 123 Copynumber: 2.0 Consensus size: 122
825676 AGGACCCGTT
* *
825686 TGGTTCACGGAATATTTCATTCTTAGGAGGGATATTTTTTTTCGAGGTTAAGATACCACGTTTAG
1 TGGTTCACCGAATATTTCATTCTTAGAAGGGATATTTTTTTTCGAGGTTAAGATACCACGTTTAG
825751 ATGGGCCACATTCTCAAGTACCAATAAAAAATGAATAACAACAGTGGTATTTTTTTC
66 ATGGGCCACATTCTCAAGTACCAATAAAAAATGAATAACAACAGTGGTATTTTTTTC
* *
825808 TGGTTCACCTAATATTTCATTCTTAGAAGGGATGTTTTTTTTCGAGGTTAAGATACTCACGTTT-
1 TGGTTCACCGAATATTTCATTCTTAGAAGGGATATTTTTTTTCGAGGTTAAGATAC-CACGTTTA
* * *
825872 GAATGGGCCACATTCTTAAGTACCAATAAAAAATGAATACCAATAGTGGTATTTTTT
65 G-ATGGGCCACATTCTCAAGTACCAATAAAAAATGAATAACAACAGTGGTATTTTTT
825929 CTGTTTTCTC
Statistics
Matches: 112, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
122 53 0.47
123 59 0.53
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (122 bp):
TGGTTCACCGAATATTTCATTCTTAGAAGGGATATTTTTTTTCGAGGTTAAGATACCACGTTTAG
ATGGGCCACATTCTCAAGTACCAATAAAAAATGAATAACAACAGTGGTATTTTTTTC
Found at i:825993 original size:48 final size:48
Alignment explanation
Indices: 825919--826020 Score: 179
Period size: 48 Copynumber: 2.1 Consensus size: 48
825909 TACCAATAGT
* *
825919 GGTA-TTTTTTCTGTTTTCTCGGGAATATTAGTCCCCTATCTCCCTTA
1 GGTATTTTTTTCTGTTTTCCCGAGAATATTAGTCCCCTATCTCCCTTA
825966 GGTATTTTTTTCTGTTTTCCCGAGAATATTAGTCCCCTATCTCCCTTA
1 GGTATTTTTTTCTGTTTTCCCGAGAATATTAGTCCCCTATCTCCCTTA
826014 GGTATTT
1 GGTATTT
826021 GCTTATTCCC
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
47 4 0.08
48 48 0.92
ACGTcount: A:0.16, C:0.23, G:0.15, T:0.47
Consensus pattern (48 bp):
GGTATTTTTTTCTGTTTTCCCGAGAATATTAGTCCCCTATCTCCCTTA
Found at i:826330 original size:12 final size:12
Alignment explanation
Indices: 826305--826336 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
826295 TACAGAGGGG
826305 TTTC-TCTT-TT
1 TTTCTTCTTCTT
826315 TTTCTTCTTCTT
1 TTTCTTCTTCTT
826327 TTTCTTCTTC
1 TTTCTTCTTC
826337 AACCCTTCGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 4 0.20
11 4 0.20
12 12 0.60
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTCTTCTTCTT
Found at i:828651 original size:17 final size:17
Alignment explanation
Indices: 828625--828658 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
828615 TGCAGGTTAT
*
828625 CCAAATAATCCACTGTC
1 CCAAACAATCCACTGTC
828642 CCAAACAATCCACTGTC
1 CCAAACAATCCACTGTC
828659 TCTAGTCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.38, G:0.06, T:0.21
Consensus pattern (17 bp):
CCAAACAATCCACTGTC
Found at i:831376 original size:15 final size:16
Alignment explanation
Indices: 831366--831428 Score: 58
Period size: 16 Copynumber: 3.9 Consensus size: 16
831356 TAATTATAAT
831366 TATAAT-TATTATTAA
1 TATAATATATTATTAA
* *
831381 TATAATATATTAATAT
1 TATAATATATTATTAA
* *
831397 TATTATTTATTATTAA
1 TATAATATATTATTAA
831413 -ATAAATATATATATTA
1 TAT-AATATAT-TATTA
831429 CAAATTACAT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
15 8 0.22
16 24 0.65
17 5 0.14
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TATAATATATTATTAA
Found at i:833610 original size:28 final size:27
Alignment explanation
Indices: 833579--833632 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
833569 TGTTTCTTTC
*
833579 TTTTCAAAATTTTTATATATACTTATTA
1 TTTTCAAAATATTTATATATA-TTATTA
* *
833607 TTTTCATAATATTTATGTATATTATT
1 TTTTCAAAATATTTATATATATTATT
833633 TTATTAATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (27 bp):
TTTTCAAAATATTTATATATATTATTA
Found at i:841804 original size:75 final size:75
Alignment explanation
Indices: 841672--841846 Score: 228
Period size: 75 Copynumber: 2.3 Consensus size: 75
841662 ACAAGAAACA
* * * * *
841672 AATGATGGAGCATGTTGAAAGCCCATTTCATTCATGATCAGGAATGTTGACACATTTTGAACGTT
1 AATGATGGGGCATGCTGAAAGCCCATTTCAATCATGATCAAGAATGTTGACACATTTTGAACATT
841737 TGTATTAG-C
66 TGTATTAGTC
* * *
841746 TAATGCTGGGGCATGCTGAATGCCCCTTTCAATCA-GAATCAAGAATGTTGACACATTTTGAACA
1 -AATGATGGGGCATGCTGAAAGCCCATTTCAATCATG-ATCAAGAATGTTGACACATTTTGAACA
841810 TTTGTATTAGTC
64 TTTGTATTAGTC
* *
841822 AATGTTGGGGCATGCTGAAGGCCCA
1 AATGATGGGGCATGCTGAAAGCCCA
841847 CATCGTTATA
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
74 1 0.01
75 85 0.98
76 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (75 bp):
AATGATGGGGCATGCTGAAAGCCCATTTCAATCATGATCAAGAATGTTGACACATTTTGAACATT
TGTATTAGTC
Found at i:842852 original size:22 final size:22
Alignment explanation
Indices: 842777--842854 Score: 90
Period size: 22 Copynumber: 3.5 Consensus size: 22
842767 TACATCTACA
* *
842777 CTTTTCAAAGATGATAGACTAT
1 CTTTTCAAAGATGATAGATTCT
842799 -TTCTTCAAAGATGATAGCATATCT
1 CTT-TTCAAAGATGATAG-AT-TCT
842823 C-TTT-AAAGATGATAGATTCT
1 CTTTTCAAAGATGATAGATTCT
842843 CTTTTCAAAGAT
1 CTTTTCAAAGAT
842855 TAAAGCTTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
20 4 0.08
21 7 0.15
22 31 0.65
23 3 0.06
24 3 0.06
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (22 bp):
CTTTTCAAAGATGATAGATTCT
Found at i:844019 original size:47 final size:46
Alignment explanation
Indices: 843626--844233 Score: 934
Period size: 46 Copynumber: 13.1 Consensus size: 46
843616 TGTTTTCAAA
* *
843626 AAAAACCTTCGGGTCATCTGTAAGTCCTTTAGTGCATGATGTTTTC
1 AAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
*
843672 AAAAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTATC
1 -AAAAA-CCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
* *
843720 AAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTATC
1 AAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
*
843766 AAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCTTGATGTTTTTC
1 AAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATG-TTTTC
* *
843813 -AAAATCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTTC
1 AAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
*
843858 AAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCTTGATGTTTTTC
1 AAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATG-TTTTC
* * * *
843905 -AAAACCTTCGGGTCATCTGTAAGTCCTTTAGTGCTTGATGTTATC
1 AAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
*
843950 AAAAACCTTCGGGTCATCTGTAAGTCCTTCA-TGCATGATGTTTTC
1 AAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
*
843995 AAAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTTC
1 --AAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
844043 AAAAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
1 -AAAAA-CCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
* * *
844091 AAAAAACTTTCAGTTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
1 -AAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
844138 AAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
1 AAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
*
844184 AAAAAACCTTCAGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
1 -AAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
844231 AAA
1 AAA
844234 CATTTCCATC
Statistics
Matches: 524, Mismatches: 27, Indels: 21
0.92 0.05 0.04
Matches are distributed among these distances:
45 21 0.04
46 266 0.51
47 139 0.27
48 98 0.19
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (46 bp):
AAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC
Found at i:844388 original size:16 final size:16
Alignment explanation
Indices: 844363--844425 Score: 67
Period size: 16 Copynumber: 3.9 Consensus size: 16
844353 TAATTATAAT
844363 TATAAT-TATTATTAA
1 TATAATATATTATTAA
*
844378 TATAATATATTAATAA
1 TATAATATATTATTAA
* *
844394 TATTATTTATTATTAA
1 TATAATATATTATTAA
844410 -ATAAATATATATATTA
1 TAT-AATATAT-TATTA
844426 CAAATTATAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
15 8 0.21
16 26 0.67
17 5 0.13
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TATAATATATTATTAA
Found at i:850627 original size:22 final size:22
Alignment explanation
Indices: 850600--850641 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
850590 AGACATAATA
*
850600 TATATG-ATAAGAGCATAAGAGT
1 TATATGAACAAGAG-ATAAGAGT
850622 TATATGAACAAGAGATAAGA
1 TATATGAACAAGAGATAAGA
850642 AATATGAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.50, C:0.05, G:0.21, T:0.24
Consensus pattern (22 bp):
TATATGAACAAGAGATAAGAGT
Found at i:851722 original size:34 final size:33
Alignment explanation
Indices: 851668--851748 Score: 128
Period size: 34 Copynumber: 2.4 Consensus size: 33
851658 TTTAACTTTT
851668 TTTATTATTTTATTTTTTTTTTTCCTTTGATTTA
1 TTTATTATTTT-TTTTTTTTTTTCCTTTGATTTA
*
851702 TTTAATATTTTTTTTATTTTTTTCCTTTGATTTA
1 TTTATTATTTTTTTT-TTTTTTTCCTTTGATTTA
851736 TTT-TTATTTTTTT
1 TTTATTATTTTTTT
851749 CCTTTCATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
33 13 0.30
34 31 0.70
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (33 bp):
TTTATTATTTTTTTTTTTTTTTCCTTTGATTTA
Found at i:851743 original size:24 final size:24
Alignment explanation
Indices: 851708--851762 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
851698 TTTATTTAAT
*
851708 ATTT-TTTTTATTTTTTTCCTTTG
1 ATTTATTTTTATTTTTTTCCTTTC
851731 ATTTATTTTTATTTTTTTCCTTTC
1 ATTTATTTTTATTTTTTTCCTTTC
851755 ATTTATTT
1 ATTTATTT
851763 AATATTTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 4 0.13
24 26 0.87
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.76
Consensus pattern (24 bp):
ATTTATTTTTATTTTTTTCCTTTC
Found at i:851768 original size:25 final size:24
Alignment explanation
Indices: 851708--851769 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
851698 TTTATTTAAT
* *
851708 ATTT-TTTTTATTTTTTTCCTTTG
1 ATTTATTTATATTTTTTTCCTTTC
*
851731 ATTTATTTTTATTTTTTTCCTTTC
1 ATTTATTTATATTTTTTTCCTTTC
851755 ATTTATTTAATATTT
1 ATTTATTT-ATATTT
851770 ATTTATTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
23 4 0.11
24 26 0.74
25 5 0.14
ACGTcount: A:0.16, C:0.08, G:0.02, T:0.74
Consensus pattern (24 bp):
ATTTATTTATATTTTTTTCCTTTC
Found at i:853597 original size:251 final size:252
Alignment explanation
Indices: 853129--853613 Score: 574
Period size: 251 Copynumber: 1.9 Consensus size: 252
853119 AAATAATAAA
* * *
853129 TTTTCATACACTTGAGATAAATTATTTTAAAAATTCAATTTTTGTTCTGGTAAAATAAAAAAAAG
1 TTTTCACACACTTGAGAAAAATTATTTTAAAAATTCAATTTTTGTTCTAGT-AAAT-AAAAAAAG
* * * *
853194 ATAAGATCGAGTTTGGTTGTTTTTATTGTAGTGCTATTGTTAATGAATGATTGTTGTTGTATCTT
64 ACAAGATCGAGTTTGATTGTTTTTATTGTAATGCTATTGCTAATGAATGATTGTTGTTGTATCTT
* ** * * * * *
853259 CATAGATGGACGTCTAATATTCTCAAGTATTGAGAAGAGGACGAATCTATTTTGAGGAGATTGTT
129 CAAAGATGGACGTCTAATATTCTCAAACACTGAGAAGACGACGAATCTATTTTAAGAAGATCGTT
*
853324 TATACCTGCCCTGACAAATCTTGTTACTAGTTCAACTTTTGGAAATTTTGACAGCAAAT
194 TATACCTGCCCTAACAAATCTTGTTACTAGTTCAACTTTTGGAAATTTTGACAGCAAAT
* *
853383 TTTTCACATACTTGA-AAAAATTA-TTTCAAAATTCAATTTTTGTTCTAGT-AAT-AAAAAAGAC
1 TTTTCACACACTTGAGAAAAATTATTTTAAAAATTCAATTTTTGTTCTAGTAAATAAAAAAAGAC
* *
853444 AATATCGAGTTTGATT-TTCTTTATTGGAGTAATGCTATTGCTAATGAATGATTGTTGTTGTATT
66 AAGATCGAGTTTGATTGTT-TTTATT---GTAATGCTATTGCTAATGAATGATTGTTGTTGTATC
* * * *
853508 TTGAAAGATGTA-GTCTAATATTCTCCAAACACTGA-AGAGACGACGGATCTATTTTAATAAGAT
127 TTCAAAGATGGACGTCTAATATTCT-CAAACACTGAGA-AGACGACGAATCTATTTTAAGAAGAT
* * *
853571 CGTTTGTACAC-G-TCTCAACTAATCTTGTTACTAGTTCAACTTT
190 CGTTTATAC-CTGCCCT-AACAAATCTTGTTACTAGTTCAACTTT
853614 AGGTAGATTC
Statistics
Matches: 196, Mismatches: 27, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
247 2 0.01
248 28 0.14
250 18 0.09
251 103 0.53
252 25 0.13
253 7 0.04
254 13 0.07
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (252 bp):
TTTTCACACACTTGAGAAAAATTATTTTAAAAATTCAATTTTTGTTCTAGTAAATAAAAAAAGAC
AAGATCGAGTTTGATTGTTTTTATTGTAATGCTATTGCTAATGAATGATTGTTGTTGTATCTTCA
AAGATGGACGTCTAATATTCTCAAACACTGAGAAGACGACGAATCTATTTTAAGAAGATCGTTTA
TACCTGCCCTAACAAATCTTGTTACTAGTTCAACTTTTGGAAATTTTGACAGCAAAT
Found at i:865232 original size:54 final size:54
Alignment explanation
Indices: 865144--865329 Score: 300
Period size: 54 Copynumber: 3.4 Consensus size: 54
865134 ATAAGTTCTT
* * **
865144 TGGGGTGCACACATAGTGCCGATACATTCGTTCATAAACTTATTATGAATTCCG
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
* * **
865198 TGGGTTACACACTTAGTGCCGATATGGTCGTTCATAAACTTATTATGAATTATG
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
865252 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
1 TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
865306 TGGGTTGCACACTTAGTGCCGATA
1 TGGGTTGCACACTTAGTGCCGATA
865330 GTACACATAA
Statistics
Matches: 120, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 120 1.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (54 bp):
TGGGTTGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTCCG
Found at i:865790 original size:18 final size:20
Alignment explanation
Indices: 865748--865795 Score: 73
Period size: 18 Copynumber: 2.5 Consensus size: 20
865738 GGAATCCATG
*
865748 GTATCGATACCTTCCTATTA
1 GTATCGATACCTTCCTATCA
865768 GTATCGATACCTT-C-ATCA
1 GTATCGATACCTTCCTATCA
865786 GTATCGATAC
1 GTATCGATAC
865796 TAATTGTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 13 0.48
19 1 0.04
20 13 0.48
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.35
Consensus pattern (20 bp):
GTATCGATACCTTCCTATCA
Found at i:872528 original size:21 final size:22
Alignment explanation
Indices: 872502--872548 Score: 87
Period size: 21 Copynumber: 2.2 Consensus size: 22
872492 AAATTTATTT
872502 TATCTCTTTATTACC-CATGTA
1 TATCTCTTTATTACCTCATGTA
872523 TATCTCTTTATTACCTCATGTA
1 TATCTCTTTATTACCTCATGTA
872545 TATC
1 TATC
872549 CTGTAGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 15 0.60
22 10 0.40
ACGTcount: A:0.23, C:0.23, G:0.04, T:0.49
Consensus pattern (22 bp):
TATCTCTTTATTACCTCATGTA
Found at i:875115 original size:54 final size:54
Alignment explanation
Indices: 875051--875486 Score: 633
Period size: 54 Copynumber: 8.1 Consensus size: 54
875041 CGTATTGCCA
*
875051 ATACGGTCGTTCATAAACTTATTATGAATTTTGTGGGTTGTACACTTAGTGTCG
1 ATACGGTCGTTCATAAACTTATTATGAATTTTGTGGGTTGCACACTTAGTGTCG
* *
875105 ATACGGTCGTTCATAAACTTATTATGAATTCTGTGGTTTGCACACTTAGTGTCG
1 ATACGGTCGTTCATAAACTTATTATGAATTTTGTGGGTTGCACACTTAGTGTCG
*
875159 ATACGGTCGTTCATAAACTTATTATGAATTTCT-TGGGTTGCACACTTAGTGCCG
1 ATACGGTCGTTCATAAACTTATTATGAATTT-TGTGGGTTGCACACTTAGTGTCG
* * * *
875213 ATACGATCGTTCATAAACTTATTATAAATTATGTGGGTTACACACTTAGTGTCG
1 ATACGGTCGTTCATAAACTTATTATGAATTTTGTGGGTTGCACACTTAGTGTCG
* *
875267 ATACGGTCGTTCATAAACTTATTATGAATTCTGTGGGTTGCACACTTAGTGTTG
1 ATACGGTCGTTCATAAACTTATTATGAATTTTGTGGGTTGCACACTTAGTGTCG
* ** *
875321 ATGA-GGTCGTTCATAAACTAAATTATGAATTTCATGGGTTGCACACTTAGTGCCG
1 AT-ACGGTCGTTCATAAACT-TATTATGAATTTTGTGGGTTGCACACTTAGTGTCG
* * *
875376 ATACGGTCGTTCATAAACTTATTATGAATTTCGCGGGTTGCACACTTAGTTTCG
1 ATACGGTCGTTCATAAACTTATTATGAATTTTGTGGGTTGCACACTTAGTGTCG
* * * * *
875430 ATACAGTTGTTCATAAACTTATTATAAATTATGTGGGTTGCACACTTAGTGCCG
1 ATACGGTCGTTCATAAACTTATTATGAATTTTGTGGGTTGCACACTTAGTGTCG
875484 ATA
1 ATA
875487 GTACACATAG
Statistics
Matches: 342, Mismatches: 35, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
53 1 0.00
54 293 0.86
55 48 0.14
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (54 bp):
ATACGGTCGTTCATAAACTTATTATGAATTTTGTGGGTTGCACACTTAGTGTCG
Found at i:875124 original size:27 final size:27
Alignment explanation
Indices: 875094--875179 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 27
875084 TGGGTTGTAC
875094 ACTTAGTGTCGATACGGTCGTTCATAA
1 ACTTAGTGTCGATACGGTCGTTCATAA
* * * * * *** *
875121 ACTTATTAT-GAATTCTGTGGTTTGCAC
1 ACTTAGTGTCG-ATACGGTCGTTCATAA
875148 ACTTAGTGTCGATACGGTCGTTCATAA
1 ACTTAGTGTCGATACGGTCGTTCATAA
875175 ACTTA
1 ACTTA
875180 TTATGAATTT
Statistics
Matches: 39, Mismatches: 18, Indels: 4
0.64 0.30 0.07
Matches are distributed among these distances:
26 1 0.03
27 37 0.95
28 1 0.03
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (27 bp):
ACTTAGTGTCGATACGGTCGTTCATAA
Found at i:875423 original size:217 final size:216
Alignment explanation
Indices: 875017--875486 Score: 696
Period size: 217 Copynumber: 2.2 Consensus size: 216
875007 TTTTCAAATC
* * * * * * * *
875017 ATTATAAGTTATTTGGGGTGCACACGTATTGCCAATACGGTCGTTCATAAACTTATTATGAATTT
1 ATTATAAATTATGTGGGTTACACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTC
* *
875082 TGTGGGTTGTACACTTAGTGTCGATACGGTCGTTCATAAACTTATTATGAATTCTGTGGTTTGCA
66 TGTGGGTTGCACACTTAGTGTCGATACGGTCGTTCATAAACTAATTATGAATTCTGTGGTTTGCA
* **
875147 CACTTAGTGTCGATACGGTCGTTCATAAACTTATTATGAATTTCTTGGGTTGCACACTTAGTGCC
131 CACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTTCGCGGGTTGCACACTTAGTGCC
875212 GATAC-GATCGTTCATAAACTT
196 GATACAG-TCGTTCATAAACTT
*
875233 ATTATAAATTATGTGGGTTACACACTTAGTGTCGATACGGTCGTTCATAAACTTATTATGAATTC
1 ATTATAAATTATGTGGGTTACACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTC
*
875298 TGTGGGTTGCACACTTAGTGTTGATGA-GGTCGTTCATAAACTAAATTATGAATTTCATG-GG-T
66 TGTGGGTTGCACACTTAGTGTCGAT-ACGGTCGTTCATAAACT-AATTATGAA-TTC-TGTGGTT
875360 TGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTTCGCGGGTTGCACACTTAG
127 TGCACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTTCGCGGGTTGCACACTTAG
** *
875425 TTTCGATACAGTTGTTCATAAACTT
192 TGCCGATACAGTCGTTCATAAACTT
*
875450 ATTATAAATTATGTGGGTTGCACACTTAGTGCCGATA
1 ATTATAAATTATGTGGGTTACACACTTAGTGCCGATA
875487 GTACACATAG
Statistics
Matches: 229, Mismatches: 20, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
216 94 0.41
217 127 0.55
218 6 0.03
219 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (216 bp):
ATTATAAATTATGTGGGTTACACACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTC
TGTGGGTTGCACACTTAGTGTCGATACGGTCGTTCATAAACTAATTATGAATTCTGTGGTTTGCA
CACTTAGTGCCGATACGGTCGTTCATAAACTTATTATGAATTTCGCGGGTTGCACACTTAGTGCC
GATACAGTCGTTCATAAACTT
Found at i:892049 original size:44 final size:44
Alignment explanation
Indices: 892001--892384 Score: 293
Period size: 44 Copynumber: 8.7 Consensus size: 44
891991 TAGAGGCTTT
* *
892001 AATTATAAAGGTAGAAATTGAGATTGAAAAAAATGAGGGGACTC
1 AATTATAAAGGTAGAAATTGAGATTGAAAAAACTTAGGGGACTC
* * * *
892045 AATTATAAAGGTA-TAATTGAGATTG-AAAAACTCAGGGGTCTT
1 AATTATAAAGGTAGAAATTGAGATTGAAAAAACTTAGGGGACTC
* * *
892087 AATTATAAAGGTAGAAATTGATATTGAAAAAACTTATGGGCCTC
1 AATTATAAAGGTAGAAATTGAGATTGAAAAAACTTAGGGGACTC
*
892131 AATTATAAAGGTAGAAAGTGAGATTGAAAAAACTTAGGGGACTC
1 AATTATAAAGGTAGAAATTGAGATTGAAAAAACTTAGGGGACTC
* * * * * * *
892175 AATTAAAAAGTTAAAAAAGTGGGAAT--AAAAA-TTAGGGGCCTC
1 AATTATAAAGGT-AGAAATTGAGATTGAAAAAACTTAGGGGACTC
* * * *
892217 AATTATAAAGTTAGAAATTTAGATT-AAAAATATTTAGGGGTCTC
1 AATTATAAAGGTAGAAATTGAGATTGAAAAA-ACTTAGGGGACTC
* * * * *
892261 AATTGTAAAGGTGGAAAAGATAGAAGTGAGATTGAAAAAACTTAAGAGCCTC
1 AATTATAAAGGT-----AG--A-AATTGAGATTGAAAAAACTTAGGGGACTC
* * * *
892313 AATTATAAAGTTA-AAACATGGGATT-AAAAAA-TTAGGGGCCTC
1 AATTATAAAGGTAGAAA-TTGAGATTGAAAAAACTTAGGGGACTC
* * **
892355 AAATATAAAGATA-AAAAAGAGATTGAAAAA
1 AATTATAAAGGTAGAAATTGAGATTGAAAAA
892385 GTTAGAAACT
Statistics
Matches: 277, Mismatches: 46, Indels: 36
0.77 0.13 0.10
Matches are distributed among these distances:
41 14 0.05
42 79 0.29
43 35 0.13
44 103 0.37
45 10 0.04
47 1 0.00
49 2 0.01
51 1 0.00
52 27 0.10
53 5 0.02
ACGTcount: A:0.47, C:0.07, G:0.21, T:0.26
Consensus pattern (44 bp):
AATTATAAAGGTAGAAATTGAGATTGAAAAAACTTAGGGGACTC
Found at i:892132 original size:86 final size:88
Alignment explanation
Indices: 891999--892184 Score: 259
Period size: 86 Copynumber: 2.1 Consensus size: 88
891989 TATAGAGGCT
* *
891999 TTAATTATAAAGGTAGAAATTGAGATTGAAAAAAATGAGGGGACTCAATTATAAAGGTA-TAATT
1 TTAATTATAAAGGTAGAAATTGAGATTGAAAAAAATGAGGGGACTCAATTATAAAGGTAGAAAGT
*
892063 GAGATTG-AAAAACTCAGGGGTC
66 GAGATTGAAAAAACTCAGGGGAC
* * * * *
892085 TTAATTATAAAGGTAGAAATTGATATTGAAAAAACTTATGGGCCTCAATTATAAAGGTAGAAAGT
1 TTAATTATAAAGGTAGAAATTGAGATTGAAAAAAATGAGGGGACTCAATTATAAAGGTAGAAAGT
*
892150 GAGATTGAAAAAACTTAGGGGAC
66 GAGATTGAAAAAACTCAGGGGAC
* *
892173 TCAATTAAAAAG
1 TTAATTATAAAG
892185 TTAAAAAAGT
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
86 54 0.62
87 10 0.11
88 23 0.26
ACGTcount: A:0.45, C:0.06, G:0.22, T:0.27
Consensus pattern (88 bp):
TTAATTATAAAGGTAGAAATTGAGATTGAAAAAAATGAGGGGACTCAATTATAAAGGTAGAAAGT
GAGATTGAAAAAACTCAGGGGAC
Found at i:892215 original size:86 final size:88
Alignment explanation
Indices: 892026--892283 Score: 260
Period size: 86 Copynumber: 3.0 Consensus size: 88
892016 AATTGAGATT
* * * * *
892026 GAAAAAAATGAGGGGACTCAATTATAAAGGTA-TAATTGAGATTG-AAAAACTCAGGGGTCTTAA
1 GAAAAAAATTAGGGGCCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAACTTAGGGGTCTCAA
* ** **
892089 TTATAAAGGTAGAAATTGATATT
66 TTAAAAAGGTAGAAAAAGATAGG
* * * *
892112 GAAAAAACTTATGGGCCTCAATTATAAAGGTAGAAAGTGAGATTGAAAAAACTTAGGGGACTCAA
1 GAAAAAAATTAGGGGCCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAACTTAGGGGTCTCAA
*
892177 TTAAAAAGTTA-AAAAAG-T-GG
66 TTAAAAAGGTAGAAAAAGATAGG
* * *
892197 GAATAAAAATTAGGGGCCTCAATTATAAAGTTAGAAATTTAGATT-AAAAATATTTAGGGGTCTC
1 GAA-AAAAATTAGGGGCCTCAATTATAAAGGTAGAAATTGAGATTGAAAAA-ACTTAGGGGTCTC
** *
892261 AATTGTAAAGGT-GGAAAAGATAG
64 AATTAAAAAGGTAGAAAAAGATAG
892284 AAGTGAGATT
Statistics
Matches: 139, Mismatches: 26, Indels: 12
0.79 0.15 0.07
Matches are distributed among these distances:
85 8 0.06
86 90 0.65
87 15 0.11
88 26 0.19
ACGTcount: A:0.45, C:0.07, G:0.22, T:0.26
Consensus pattern (88 bp):
GAAAAAAATTAGGGGCCTCAATTATAAAGGTAGAAATTGAGATTGAAAAAACTTAGGGGTCTCAA
TTAAAAAGGTAGAAAAAGATAGG
Found at i:892221 original size:130 final size:130
Alignment explanation
Indices: 892001--892491 Score: 399
Period size: 130 Copynumber: 3.7 Consensus size: 130
891991 TAGAGGCTTT
* * * * * * *
892001 AATTATAAAGGTAGAAATTGAGATTGAAAAAAATGAGGGGACTCAATTATAAAGGT-ATAATTGA
1 AATTATAAAGGTAGAAAGTGAGATTGAAAAAACTTAGGGGACTCAATTATAAAGTTAAAAAATGG
* * * * * *
892065 GATTGAAAAACTCAGGGGTCTTAATTATAAAGGTAGAAATTGATATTGAAAAA-ACTTATGGGCC
66 GATT-AAAAAATTAGGGGCCTCAATTATAAAGGTAGAAATTGAGATT-AAAAATACTTAGGGGCC
892129 TC
129 TC
*
892131 AATTATAAAGGTAGAAAGTGAGATTGAAAAAACTTAGGGGACTCAATTAAAAAGTTAAAAAAGTG
1 AATTATAAAGGTAGAAAGTGAGATTGAAAAAACTTAGGGGACTCAATTATAAAGTTAAAAAA-TG
* * * * *
892196 GGAAT-AAAAATTAGGGGCCTCAATTATAAAGTTAGAAATTTAGATTAAAAATATTTAGGGGTCT
65 GGATTAAAAAATTAGGGGCCTCAATTATAAAGGTAGAAATTGAGATTAAAAATACTTAGGGGCCT
892260 C
130 C
* * * *
892261 AATTGTAAAGGTGGAAAAGATAGAAGTGAGATTGAAAAAACTTAAGAGCCTCAATTATAAAGTTA
1 AATTATAAAGGT-----AG--A-AAGTGAGATTGAAAAAACTTAGGGGACTCAATTATAAAGTTA
* * * ** * *
892326 AAACATGGGATTAAAAAATTAGGGGCCTCAAATATAAAGATA-AAAAAGAGATTGAAAA-AGTTA
58 AAAAATGGGATTAAAAAATTAGGGGCCTCAATTATAAAGGTAGAAATTGAGATTAAAAATACTTA
*** * *
892389 GAAACTTT
123 GGGGCCTC
** * *
892397 AATTATAAAATTA-AAAGGTGAGTTTGAATAAAA-TTA--GGACCTCAATTATAAAGATAAAAAA
1 AATTATAAAGGTAGAAA-GTGAGATTGAA-AAAACTTAGGGGA-CTCAATTATAAAGTTAAAAAA
** *
892458 TAAGATTTAAAAAATTAGGGGCCT-AATGATAAAG
63 TGGGA-TTAAAAAATTAGGGGCCTCAATTATAAAG
892492 ATAAAAATAG
Statistics
Matches: 294, Mismatches: 51, Indels: 35
0.77 0.13 0.09
Matches are distributed among these distances:
126 1 0.00
127 32 0.11
128 32 0.11
129 9 0.03
130 106 0.36
131 4 0.01
132 5 0.02
135 2 0.01
136 15 0.05
137 19 0.06
138 69 0.23
ACGTcount: A:0.48, C:0.06, G:0.20, T:0.26
Consensus pattern (130 bp):
AATTATAAAGGTAGAAAGTGAGATTGAAAAAACTTAGGGGACTCAATTATAAAGTTAAAAAATGG
GATTAAAAAATTAGGGGCCTCAATTATAAAGGTAGAAATTGAGATTAAAAATACTTAGGGGCCTC
Found at i:892355 original size:42 final size:42
Alignment explanation
Indices: 892276--892499 Score: 186
Period size: 42 Copynumber: 5.3 Consensus size: 42
892266 TAAAGGTGGA
* * * *
892276 AAAGATAGAAGTGAGATTGAAAAAACTTAAGAGCCTCAATTAT
1 AAAGATAAAAATGAGATTGAAAAAA-TTAGGGGCCTCAATTAT
* * *
892319 AAAGTTAAAACATGGGATT-AAAAAATTAGGGGCCTCAAATAT
1 AAAGATAAAA-ATGAGATTGAAAAAATTAGGGGCCTCAATTAT
* * *** * *
892361 AAAGATAAAAAAGAGATTGAAAAAGTTAGAAACTTTAATTAT
1 AAAGATAAAAATGAGATTGAAAAAATTAGGGGCCTCAATTAT
* * *
892403 AAA-ATTAAAAGGTGAGTTTGAATAAAATTA-GGACCTCAATTAT
1 AAAGA-TAAAA-ATGAGATTGAA-AAAATTAGGGGCCTCAATTAT
* * *
892446 AAAGATAAAAAATAAGATTTAAAAAATTAGGGGCCT-AATGAT
1 AAAGAT-AAAAATGAGATTGAAAAAATTAGGGGCCTCAATTAT
892488 AAAGATAAAAAT
1 AAAGATAAAAAT
892500 AGGCGTCCTA
Statistics
Matches: 142, Mismatches: 31, Indels: 18
0.74 0.16 0.09
Matches are distributed among these distances:
41 13 0.09
42 65 0.46
43 47 0.33
44 17 0.12
ACGTcount: A:0.52, C:0.06, G:0.17, T:0.25
Consensus pattern (42 bp):
AAAGATAAAAATGAGATTGAAAAAATTAGGGGCCTCAATTAT
Found at i:892497 original size:26 final size:28
Alignment explanation
Indices: 892467--892526 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
892457 ATAAGATTTA
*
892467 AAAAATTAGG-GGCCTAATGATAAAGAT-
1 AAAAA-TAGGCGGCCTAATGACAAAGATG
* *
892494 AAAAATAGGCGTCCTAATTACAAAGATG
1 AAAAATAGGCGGCCTAATGACAAAGATG
892522 AAAAA
1 AAAAA
892527 AATGGGAGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 4 0.14
27 19 0.68
28 5 0.18
ACGTcount: A:0.52, C:0.10, G:0.18, T:0.20
Consensus pattern (28 bp):
AAAAATAGGCGGCCTAATGACAAAGATG
Found at i:895364 original size:48 final size:48
Alignment explanation
Indices: 895228--895348 Score: 233
Period size: 48 Copynumber: 2.5 Consensus size: 48
895218 CTCCAATTTA
895228 CCTTTTCATTGCGACTAGGAGGGTTAGTTAGAGCCATTATCGAGTTTG
1 CCTTTTCATTGCGACTAGGAGGGTTAGTTAGAGCCATTATCGAGTTTG
*
895276 CCTTTTCATCGCGACTAGGAGGGTTAGTTAGAGCCATTATCGAGTTTG
1 CCTTTTCATTGCGACTAGGAGGGTTAGTTAGAGCCATTATCGAGTTTG
895324 CCTTTTCATTGCGACTAGGAGGGTT
1 CCTTTTCATTGCGACTAGGAGGGTT
895349 CGATAAGATA
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (48 bp):
CCTTTTCATTGCGACTAGGAGGGTTAGTTAGAGCCATTATCGAGTTTG
Found at i:896144 original size:182 final size:181
Alignment explanation
Indices: 895812--896959 Score: 1543
Period size: 182 Copynumber: 6.3 Consensus size: 181
895802 AGGTAAAAAT
* **
895812 ATGACAAAACCGGTAAA-ACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATTG
1 ATGACAAAACCGGTAAATA--ATACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCA
* * * ** *
895876 ACACTTTCT-GAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCAAAACTTTATGAAAT
64 ACACTTT-TGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAA
* * * **
895940 TGTATCAATACATAACAATATAACAGCTAAAAATATGACAAAATTGGTCTCAAA
128 TGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACAGGTCTCAAA
** * * * * *
895994 ATGACAAAAAAGGTAAATAATTACTGGATATGTTGAAAGTGTCGATACTTTGATATAATTATCGA
1 ATGACAAAACCGGTAAATAA-TACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAA
* *
896059 CACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCACCTATAAAGTGTCGATATTTTAAAAAAATG
65 CACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAATG
* * * *
896124 TATCGATCTATAATAATATAATAGGTAAAAATATGACAAAACCGGTCTCAAA
130 TATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACAGGTCTCAAA
*
896176 ATGATAAAACCGGTAAA-ACGATACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCA
1 ATGACAAAACCGGTAAATA--ATACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCA
* * **
896240 ACACTTTCT-GAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAA
64 ACACTTT-TGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAA
* * * *
896304 TGTATCGATCTATAACAATATAACAGCTAAAAATATGAGAAAATAGGTCTCAAA
128 TGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACAGGTCTCAAA
* * * * *
896358 ATGACAAAACAGGTAAATAACTACAGGATATGTTGAACGTGTCGATACTTTAATATAAGTATCGA
1 ATGACAAAACCGGTAAATAA-TACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAA
* * * *
896423 CACTTTTGGAATTTAAAAGAGAATAAGTTATAGAGCCTATAAAGTGTCGATATTTTTTAAAAAAT
65 CACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATA-CTTTAAAAAAAT
*
896488 GTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAA
129 GTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACAGGTCTCAAA
* *
896541 ATGACAAAATCGAT-AATACGATACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCA
1 ATGACAAAACCGGTAAATA--ATACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCA
* *
896605 ACACTTTTGGAATTTAAAAGAGAATAAGTTATAGTGCCTATAAAGTGTCGATACTTTAAAAAAAT
64 ACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAAT
* * *
896670 ATATCGATCCATAATAATATAACATGTAAAAATATGACAAAACAGGTCTCAAA
129 GTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACAGGTCTCAAA
** * *
896723 ATGATGAAACCGGTAAAAAGATACCAGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAA
1 ATGACAAAACCGGTAAATA-ATACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAA
* *
896788 CACTTTTGGAATTTAAAAGAGAAGAAGTTATAGTGCCTACAAAGTGTCGATACTTTAAAAAAATG
65 CACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAATG
*
896853 TATCGATCCATAGA-AATATAACAGGTAAAAATATGACAAAACTGGTCTCAAA
130 TATCGATCCATA-ACAATATAACAGGTAAAAATATGACAAAACAGGTCTCAAA
** * * *
896905 ATGACAAAACCGGTAAAGTGCTATCGGATATGTTGAAAGTGTTGATACTTTAATA
1 ATGACAAAACCGGTAAA-TAATACCGGATATGTTGAAAGTGTCGATAATTTAATA
896960 AGTACGCGTA
Statistics
Matches: 854, Mismatches: 97, Indels: 30
0.87 0.10 0.03
Matches are distributed among these distances:
181 4 0.00
182 683 0.80
183 166 0.19
184 1 0.00
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (181 bp):
ATGACAAAACCGGTAAATAATACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAAC
ACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAATGT
ATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACAGGTCTCAAA
Found at i:896834 original size:547 final size:545
Alignment explanation
Indices: 895812--896959 Score: 1700
Period size: 547 Copynumber: 2.1 Consensus size: 545
895802 AGGTAAAAAT
* *
895812 ATGACAAAACCGGTAAA-ACGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATTG
1 ATGACAAAACCGGTAAATA-GCTA-CGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCG
* * *
895876 ACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCAAAACTTTATGAAATT
64 ACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGAGCCTAAAAAGTGTCAAAACTTTATAAAAAT
**
895941 GTATCAATACATAACAATATAACAGCTAAAAATATGACAAAATTGGTCTCAAAATGACAAAAAAG
129 GTATCAATACATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAAAAAAG
* * * * * *
896006 GTAAATAATTACTGGATATGTTGAAAGTGTCGATACTTTGATATAATTATCGACACTTTTGGAAT
194 ATAAATAATTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAACACTTTTGGAAT
* * *
896071 TTAAAAGAGAAGAAGTTATAGCACCTATAAAGTGTCGATATTTTAAAAAAATGTATCGATCTATA
259 TTAAAAGAGAAGAAGTTATAGCACCTATAAAGTGTCGATACTTTAAAAAAATATATCGATCCATA
* * *
896136 ATAATATAATAGGTAAAAATATGACAAAACCGGTCTCAAAATGATAAAACCGGTAAAACGATACC
324 ATAATATAACAGGTAAAAATATGACAAAACAGGTCTCAAAATGATAAAACCGGTAAAAAGATACC
*
896201 GGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAACACTTTCTGAATTTAAAAGAGAAGA
389 AGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAACACTTTCTGAATTTAAAAGAGAAGA
** *
896266 AGTTATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGATCTATA-ACAATATAACAG
454 AGTTATAGCGCCTAAAAAGTGTCGACACTTTAAAAAAATGTATCGATCCATAGA-AATATAACAG
*
896330 CTAAAAATATGAGAAAA-TAGGTCTCAAA
518 CTAAAAATATGACAAAACT-GGTCTCAAA
* * *
896358 ATGACAAAACAGGTAAATAACTACAGGATATGTTGAACGTGTCGATACTTTAATATAAGTATCGA
1 ATGACAAAACCGGTAAATAGCTAC-GGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGA
* * * * * *
896423 CACTTT-TGGAATTTAAAAGAGAATAAGTTATAGAGCCTATAAAGTGTCGATATTTTTTAAAAAA
65 CACTTTCT-GAATTTAAAAGAGAAGAAGTTATAGAGCCTAAAAAGTGTCAAAACTTTAT-AAAAA
* * * **
896487 TGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCAAAATGACAAAATC
128 TGTATCAATACATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAAAAAA
896552 GAT-AATACGA-TACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAACACTTTTGG
193 GATAAATA--ATTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAACACTTTTGG
* **
896615 AATTTAAAAGAGAATAAGTTATAGTGCCTATAAAGTGTCGATACTTTAAAAAAATATATCGATCC
256 AATTTAAAAGAGAAGAAGTTATAGCACCTATAAAGTGTCGATACTTTAAAAAAATATATCGATCC
* *
896680 ATAATAATATAACATGTAAAAATATGACAAAACAGGTCTCAAAATGATGAAACCGGTAAAAAGAT
321 ATAATAATATAACAGGTAAAAATATGACAAAACAGGTCTCAAAATGATAAAACCGGTAAAAAGAT
896745 ACCAGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAACACTTT-TGGAATTTAAAAGAG
386 ACCAGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAACACTTTCT-GAATTTAAAAGAG
* * *
896809 AAGAAGTTATAGTGCCTACAAAGTGTCGATACTTTAAAAAAATGTATCGATCCATAGAAATATAA
450 AAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTAAAAAAATGTATCGATCCATAGAAATATAA
*
896874 CAGGTAAAAATATGACAAAACTGGTCTCAAA
515 CAGCTAAAAATATGACAAAACTGGTCTCAAA
*
896905 ATGACAAAACCGGTAAAGT-GCTATCGGATATGTTGAAAGTGTTGATACTTTAATA
1 ATGACAAAACCGGTAAA-TAGCTA-CGGATATGTTGAAAGTGTCGATACTTTAATA
896960 AGTACGCGTA
Statistics
Matches: 540, Mismatches: 51, Indels: 21
0.88 0.08 0.03
Matches are distributed among these distances:
545 2 0.00
546 110 0.20
547 423 0.78
548 5 0.01
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (545 bp):
ATGACAAAACCGGTAAATAGCTACGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGAC
ACTTTCTGAATTTAAAAGAGAAGAAGTTATAGAGCCTAAAAAGTGTCAAAACTTTATAAAAATGT
ATCAATACATAACAATATAACAGCTAAAAATATGACAAAACCGGTCTCAAAATGACAAAAAAGAT
AAATAATTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAACACTTTTGGAATTT
AAAAGAGAAGAAGTTATAGCACCTATAAAGTGTCGATACTTTAAAAAAATATATCGATCCATAAT
AATATAACAGGTAAAAATATGACAAAACAGGTCTCAAAATGATAAAACCGGTAAAAAGATACCAG
ATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAACACTTTCTGAATTTAAAAGAGAAGAAG
TTATAGCGCCTAAAAAGTGTCGACACTTTAAAAAAATGTATCGATCCATAGAAATATAACAGCTA
AAAATATGACAAAACTGGTCTCAAA
Found at i:897368 original size:19 final size:19
Alignment explanation
Indices: 897346--897413 Score: 100
Period size: 19 Copynumber: 3.6 Consensus size: 19
897336 CTTTTATTTA
*
897346 ATATTATATGTAAAAAATG
1 ATATTATAGGTAAAAAATG
897365 ATATTATAGGTAAAAAATG
1 ATATTATAGGTAAAAAATG
**
897384 ATATTATAGGTTGAAAATG
1 ATATTATAGGTAAAAAATG
*
897403 ATATTTTAGGT
1 ATATTATAGGT
897414 TGTATAAATG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 45 1.00
ACGTcount: A:0.46, C:0.00, G:0.16, T:0.38
Consensus pattern (19 bp):
ATATTATAGGTAAAAAATG
Found at i:898719 original size:22 final size:22
Alignment explanation
Indices: 898668--898723 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 22
898658 GAATGTTTTT
898668 ATTTT-TTATATAAAATGATAG
1 ATTTTATTATATAAAATGATAG
*
898689 TATAGTTATTATATAAAATGATA-
1 -AT-TTTATTATATAAAATGATAG
898712 ACTTTTATTATA
1 A-TTTTATTATA
898724 AATGAAGGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
22 11 0.38
23 3 0.10
24 15 0.52
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (22 bp):
ATTTTATTATATAAAATGATAG
Found at i:899370 original size:18 final size:18
Alignment explanation
Indices: 899347--899385 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
899337 GAAAAAATTT
899347 GAAGAA-AAGAAGATGGAG
1 GAAGAAGAA-AAGATGGAG
899365 GAAGAAGAAAAGATGGAG
1 GAAGAAGAAAAGATGGAG
899383 GAA
1 GAA
899386 ATGGGGAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.56, C:0.00, G:0.38, T:0.05
Consensus pattern (18 bp):
GAAGAAGAAAAGATGGAG
Found at i:900881 original size:19 final size:19
Alignment explanation
Indices: 900857--900906 Score: 75
Period size: 19 Copynumber: 2.6 Consensus size: 19
900847 AAATGTAGGG
900857 TTAATTTTGTATA-AGATTT
1 TTAATTTTGTATACA-ATTT
900876 TTAATTTTGTATACAATTT
1 TTAATTTTGTATACAATTT
*
900895 ATAATTTTGTAT
1 TTAATTTTGTAT
900907 GTGAATGTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 28 0.97
20 1 0.03
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (19 bp):
TTAATTTTGTATACAATTT
Found at i:901621 original size:199 final size:197
Alignment explanation
Indices: 901278--901652 Score: 633
Period size: 199 Copynumber: 1.9 Consensus size: 197
901268 GTAAACTTAT
901278 GTGTCGATACATTTATAAGAAGTCAATCCCAAAAACATCGAAACCCATAATTATAATATAATAGG
1 GTGTCGATACATTTATAAGAAGTCAATCCCAAAAACATCGAAACCCATAATTATAATATAATAGG
* * *
901343 TAAATTAACAATGTAACCGGTCTAAATATACCAATTTTTGAGAAAACATGTGTACAAAAAGTATC
66 TAAATTAACAATGTAACCAGTCTAAATATACCAAGTTTTGAGAAAACAAGTGTACAAAAAGTATC
*
901408 GACACAAATAAAACAAGTGTCGATACTTTTAGTCCAGAATGTATTTCAAAACCAGGTGTACTAAA
131 GAAACAAATAAAACAAGTGTCGATACTTTTAGTCCAGAATGTATTTCAAAACCAGGTGTACTAAA
901473 AA
196 AA
* *
901475 GTGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAGAA--GTCAATCCCAAAAACATCGAAACCCATAATTATAATATAATA
* * *
901540 GGTAAATTAGCAATGTAACCAGTCTAAATATACCAGGTTTTGAGAAAGCAAGTGTACAAAAAGTA
64 GGTAAATTAACAATGTAACCAGTCTAAATATACCAAGTTTTGAGAAAACAAGTGTACAAAAAGTA
* *
901605 TCGAAACAACTAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTT
129 TCGAAACAAATAAAACAAGTGTCGATACTTTTAGTCCAGAATGTATTT
901653 GTAACATCCC
Statistics
Matches: 165, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
197 21 0.13
199 144 0.87
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (197 bp):
GTGTCGATACATTTATAAGAAGTCAATCCCAAAAACATCGAAACCCATAATTATAATATAATAGG
TAAATTAACAATGTAACCAGTCTAAATATACCAAGTTTTGAGAAAACAAGTGTACAAAAAGTATC
GAAACAAATAAAACAAGTGTCGATACTTTTAGTCCAGAATGTATTTCAAAACCAGGTGTACTAAA
AA
Found at i:902480 original size:20 final size:20
Alignment explanation
Indices: 902455--902493 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
902445 GAACATGTTA
* *
902455 AAGAATGCATCGATGCACTG
1 AAGAATGCACCAATGCACTG
902475 AAGAATGCACCAATGCACT
1 AAGAATGCACCAATGCACT
902494 TCAATGGGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (20 bp):
AAGAATGCACCAATGCACTG
Found at i:905367 original size:199 final size:198
Alignment explanation
Indices: 904066--905351 Score: 1963
Period size: 199 Copynumber: 6.5 Consensus size: 198
904056 AAGGGCATGG
* * * ** * *
904066 AAAAGTCTCAATACATGTATAACTAGTGTCGATCCCAGAAACATCGAAACCCATAATTATGATGT
1 AAAAGTGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGT
* * *
904131 AATAGGTAAATTAACAATTTAACCGGTCTAAATATACCAATTTTTGTGAAAACAGTTGTACAAAA
66 AATAGGTAAATTAACAATGTAACCGGTCTAAATATACCAGTTTTTGAGAAAACAG-TGTACAAAA
904196 AGTATCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGC
130 AGTATCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGC
904261 ACTA
195 ACTA
* * *
904265 CAAAGGGTC-ATTACATTTATAAGAAGTGTCGATCCCAAAAACATCAAAACCCATAATTATAATG
1 AAAAGTGTCGA-TACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATG
* *
904329 TAATAGGTAAATTAACAATGTAATCAGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAA
65 TAATAGGTAAATTAACAATGTAACCGGTCTAAATATACCAGTTTTTGAGAAAACA-GTGTACAAA
* *
904394 AAGTATCGACACAAATAAAAAAAGTGTCGATAATTTTGGTCCAGAATGTATTTCAAAACCAAGTG
129 AAGTATCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTG
904459 CACTA
194 CACTA
* *
904464 AAAAGTGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCAAAACCCATAATTATAATGC
1 AAAAGTGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGT
* * * * **
904529 AATAGGTAAATTAACAATGTAACCAGACTAAAT-TACCAGTTTATGAGAAAACATGTATACGTAA
66 AATAGGTAAATTAACAATGTAACCGGTCTAAATATACCAGTTTTTGAGAAAACA-GTGTACAAAA
* ** * * * *
904593 AGTGTCGACACAAATCCAACAAGTGTCAATACTTTTTGG-CCAGAGTGTATTTTAAAAACCAAAT
130 AGTATCGACACAAATAAAACAAGTGTCGATAC-TTTTGGTCCAGAATGTA-TTTCAAAACCAAGT
904657 GCAC-A
193 GCACTA
* * * * *
904662 ACAAAGTTTCGATACATTTATAACAAGTGTCGATCCCAGAAACATCGACACCTATAATTATAATG
1 A-AAAGTGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATG
* *
904727 TAATAGGTAAATTAACAATTTAACCGGTCTAAATATACCAGTTTTTGTGAAAACAGTTGTACAAA
65 TAATAGGTAAATTAACAATGTAACCGGTCTAAATATACCAGTTTTTGAGAAAACAG-TGTACAAA
*
904792 AAGTATCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCATAATGTATTTCAAAACCAAGTG
129 AAGTATCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTG
904857 CACTA
194 CACTA
*
904862 AAAAGAGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGT
1 AAAAGTGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGT
* *
904927 AATAGGTAAATTAACAATGTAACCAGTCTAAATATACCGGTTTTTGAGAAAACATGTGTACAAAA
66 AATAGGTAAATTAACAATGTAACCGGTCTAAATATACCAGTTTTTGAGAAAACA-GTGTACAAAA
*
904992 AGTATCGACACAAATAAAACAAGTGTCGATACTTTTTGTCCAGAATGTATTTCAAAACCAAGTGC
130 AGTATCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGC
905057 ACTA
195 ACTA
*
905061 AAAAGTGTCGATATATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGAA-G
1 AAAAGTGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTAT-AATG
* * * *
905125 TAATAGGTAAATTAGCAATTTAACTGGTCTAAATATACCGGTTTTTGAGAAAACAGATGTACAAA
65 TAATAGGTAAATTAACAATGTAACCGGTCTAAATATACCAGTTTTTGAGAAAACAG-TGTACAAA
*
905190 AAGTATCGACAAAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTG
129 AAGTATCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTG
905255 CACTA
194 CACTA
*
905260 AAAAGTGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATAT
1 AAAAGTGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGT
905325 AATAGGTAAATTAA-AACTGTAACCGGT
66 AATAGGTAAATTAACAA-TGTAACCGGT
905352 ACAAAAATAC
Statistics
Matches: 989, Mismatches: 83, Indels: 30
0.90 0.08 0.03
Matches are distributed among these distances:
198 69 0.07
199 853 0.86
200 67 0.07
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.27
Consensus pattern (198 bp):
AAAAGTGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGT
AATAGGTAAATTAACAATGTAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGTGTACAAAAA
GTATCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCA
CTA
Found at i:905735 original size:15 final size:15
Alignment explanation
Indices: 905715--905756 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
905705 TTTCTCAAAA
905715 CTCTTCTCAACCCAC
1 CTCTTCTCAACCCAC
* *
905730 CTCTTCCCAACCCAG
1 CTCTTCTCAACCCAC
905745 CTCTTCTCAACC
1 CTCTTCTCAACC
905757 ACAACCTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.19, C:0.52, G:0.02, T:0.26
Consensus pattern (15 bp):
CTCTTCTCAACCCAC
Found at i:906966 original size:6 final size:6
Alignment explanation
Indices: 906920--906965 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
906910 CAAGCAGTCA
* * * *
906920 ATGAAG ATGACG ATGACG ATGACG ATGAAG ATGATG ATGATG ATGA
1 ATGACG ATGACG ATGACG ATGACG ATGACG ATGACG ATGACG ATGA
906966 TCCAAACAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.39, C:0.07, G:0.33, T:0.22
Consensus pattern (6 bp):
ATGACG
Found at i:906966 original size:12 final size:12
Alignment explanation
Indices: 906920--906965 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
906910 CAAGCAGTCA
906920 ATGAAGATGACG
1 ATGAAGATGACG
*
906932 ATGACGATGACG
1 ATGAAGATGACG
*
906944 ATGAAGATGATG
1 ATGAAGATGACG
*
906956 ATGATGATGA
1 ATGAAGATGA
906966 TCCAAACAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.39, C:0.07, G:0.33, T:0.22
Consensus pattern (12 bp):
ATGAAGATGACG
Found at i:908368 original size:24 final size:24
Alignment explanation
Indices: 908341--908387 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
908331 TTTCATTTAT
908341 AATTAGAGTTTGAATTTAAATTTC
1 AATTAGAGTTTGAATTTAAATTTC
* * *
908365 AATTTGAGTTTGAGTTTGAATTT
1 AATTAGAGTTTGAATTTAAATTT
908388 AAATGTAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.32, C:0.02, G:0.17, T:0.49
Consensus pattern (24 bp):
AATTAGAGTTTGAATTTAAATTTC
Found at i:909380 original size:200 final size:199
Alignment explanation
Indices: 908572--909557 Score: 927
Period size: 200 Copynumber: 4.9 Consensus size: 199
908562 TTATTCATTC
* * ** * *
908572 GTGTCGATACATGTTGTCCATAATGTA-TTTCCAAACCAAGTGCACGAAAAAAGTGTTGATACAT
1 GTGTCGATAC-TTTTGTCCAGAATGTATTTTAAAAACCAAGTGCAC-AACAAAGTGTCGATACAT
* * ** * *
908636 TTATAAGAAGTGTCGATACTAAAAACATCGAAATACATAGA-TATAATGTAATTGGTAAAATAAC
64 TTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATA-ATTATAATGTAATAGGTAAATTAAC
* * * * *
908700 ATTGTAACCGGCCTAAATATACCGGTTTT-TGAGAAAACATGTATACATGAAGTATTGACACAAA
128 AATGTAA-CGGTCTAAATATACCGGTTTTATGAGAAAACAGGTATACATAAAGTATCGACACAAA
*
908764 TACAATAA
192 TATAATAA
* ** * *
908772 GTGTAGATACTTTTTGTCCAGCTTGTATTTTAAAAACAAAGTGCACAACAAAATGTCGATACATT
1 GTGTCGATAC-TTTTGTCCAGAATGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATT
* *
908837 TATAAGAAGTGTCGATCCCAAAAATATCGAAACCCATAATTATGAA-GTAATAAGTAAATTAACA
65 TATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTAT-AATGTAATAGGTAAATTAACA
* * * *
908901 ATTTAACTGGTATAAATATACCGGTTTT-TGAGAAAACAGGTGTACAAAAAGTATCGACACAAAT
129 ATGTAAC-GGTCTAAATATACCGGTTTTATGAGAAAACAGGTATACATAAAGTATCGACACAAAT
* *
908965 AAAACAA
193 ATAATAA
* * * * *
908972 GTGTCGATACTTTTGGTCTAGAATGTA-TTTCAAAATCAAATGTA-ATA-AAACGTGTCGATACA
1 GTGTCGATACTTTT-GTCCAGAATGTATTTTAAAAACCAAGTGCACA-ACAAA-GTGTCGATACA
909034 TTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAAC
63 TTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAAC
* *
909099 AATGTAAACGGTCTAAATATACCGG-TTTATGAGAAAACATGTATACATAAAGTATCGACACAGA
128 AATGT-AACGGTCTAAATATACCGGTTTTATGAGAAAACAGGTATACATAAAGTATCGACACAAA
*
909163 TATAAAAA
192 TATAATAA
* * * *
909171 GTATCGATACGTTTTGTCTAGAGTGTATTTTAAAAACCAAGTGCACAACAAAGTTTCGATACATT
1 GTGTCGATAC-TTTTGTCCAGAATGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATT
* * *
909236 TATAACAAGTGTCGATCACAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTTACAA
65 TATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAA
* * * * * * * * * **
909301 TGTAACCGTTTAAATTTACCTGTTTTATGAGAAAATAGGTCTAAATAATGTATCGAAAC-TTTAT
130 TGTAACGGTCTAAATATACCGGTTTTATGAGAAAACAGGTATACATAAAGTATCGACACAAATA-
* **
909365 TTATTT
194 TAATAA
* * * *** ** * *
909371 GTGTCGATACATTTTATCCATAATG-AATTCCCAAATTATGTGCAC-GCTTAAAGTGTCGATACA
1 GTGTCGATAC-TTTTGTCCAGAATGTATTTTAAAAACCAAGTGCACAAC--AAAGTGTCGATACA
* * * * * * * * * *
909434 TTTATTAA-AAGTATCGACCCCAAATACATAGAGACCAAAAATTATAATGTAATAGGTCACTTTA
63 TTTA-TAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAA
* * ** * * * *
909498 CAATGTAATCGGTTTAAATTTACCAATTTTATGAGCAAATAGGTCTACATAATGTATCGA
127 CAATGTAA-CGGTCTAAATATACCGGTTTTATGAGAAAACAGGTATACATAAAGTATCGA
909558 TATTGTTTAT
Statistics
Matches: 659, Mismatches: 107, Indels: 39
0.82 0.13 0.05
Matches are distributed among these distances:
198 10 0.02
199 195 0.30
200 384 0.58
201 70 0.11
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (199 bp):
GTGTCGATACTTTTGTCCAGAATGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTT
ATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAAT
GTAACGGTCTAAATATACCGGTTTTATGAGAAAACAGGTATACATAAAGTATCGACACAAATATA
ATAA
Found at i:909380 original size:399 final size:400
Alignment explanation
Indices: 908619--909359 Score: 1051
Period size: 399 Copynumber: 1.9 Consensus size: 400
908609 AAGTGCACGA
* * *
908619 AAAAAGTGTTGATACATTTATAAGAAGTGTCGATACTAAAAACATCGAAATACATAGATATAATG
1 AAAAAGTGTCGATACATTTATAAGAAGTGTCGATACCAAAAACATCGAAACACATAGATATAATG
* * * * *
908684 TAATTGGTAAAATAACATTGTAACCGGCCTAAATATACCGGTTTTTGAGAAAACATGTATACATG
66 TAATAGGTAAAATAACAATGTAAACGGCCTAAATATACCGGTTTATGAGAAAACATGTATACATA
* * * * **
908749 AAGTATTGACACAAATACAATAAGTGTAGATACTTTTTGTCCAGCTTGTATTTTAAAAACAAAGT
131 AAGTATCGACACAAATACAAAAAGTATAGATACGTTTTGTCCAGAGTGTATTTTAAAAACAAAGT
* * *
908814 GCACAACAAAATGTCGATACATTTATAAGAAGTGTCGATCCCAAAAATATCGAAACCCATAATTA
196 GCACAACAAAATGTCGATACATTTATAACAAGTGTCGATCACAAAAACATCGAAACCCATAATTA
* * *
908879 TGAAGTAATAAGTAAATTAACAATTTAACTGGTATAAATATACCGGTTTTTGAGAAAACAGGTGT
261 TGAAGTAATAAGTAAATTAACAATGTAACTCGTATAAATATACCGGTTTTTGAGAAAACAGGTCT
*
908944 ACAAAAAGTATCGACACAAATAAAACAAGTGTCGATAC-TTTTGGTCTAGAATGTATTTCAAAAT
326 ACAAAAAGTATCGAAACAAATAAAACAAGTGTCGATACATTTTGGTCTAGAATGTATTTCAAAAT
909008 CAAATGTAAT
391 CAAATGTAAT
* * *
909018 AAAACGTGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATA-ATTATAAT
1 AAAAAGTGTCGATACATTTATAAGAAGTGTCGATACCAAAAACATCGAAACACATAGA-TATAAT
* *
909082 GTAATAGGTAAATTAACAATGTAAACGGTCTAAATATACCGGTTTATGAGAAAACATGTATACAT
65 GTAATAGGTAAAATAACAATGTAAACGGCCTAAATATACCGGTTTATGAGAAAACATGTATACAT
* * * * *
909147 AAAGTATCGACACAGATATAAAAAGTATCGATACGTTTTGTCTAGAGTGTATTTTAAAAACCAAG
130 AAAGTATCGACACAAATACAAAAAGTATAGATACGTTTTGTCCAGAGTGTATTTTAAAAACAAAG
* *
909212 TGCACAACAAAGTTTCGATACATTTATAACAAGTGTCGATCACAAAAACATCGAAACCCATAATT
195 TGCACAACAAAATGTCGATACATTTATAACAAGTGTCGATCACAAAAACATCGAAACCCATAATT
* * * * * *
909277 AT-AATGTAATAGGTAAATTTACAATGTAAC-CGTTTAAATTTACCTGTTTTATGAGAAAATAGG
260 ATGAA-GTAATAAGTAAATTAACAATGTAACTCGTATAAATATACCGGTTTT-TGAGAAAACAGG
*
909340 TCTA-AATAATGTATCGAAAC
323 TCTACAA-AAAGTATCGAAAC
909360 TTTATTTATT
Statistics
Matches: 298, Mismatches: 40, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
398 21 0.07
399 277 0.93
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.29
Consensus pattern (400 bp):
AAAAAGTGTCGATACATTTATAAGAAGTGTCGATACCAAAAACATCGAAACACATAGATATAATG
TAATAGGTAAAATAACAATGTAAACGGCCTAAATATACCGGTTTATGAGAAAACATGTATACATA
AAGTATCGACACAAATACAAAAAGTATAGATACGTTTTGTCCAGAGTGTATTTTAAAAACAAAGT
GCACAACAAAATGTCGATACATTTATAACAAGTGTCGATCACAAAAACATCGAAACCCATAATTA
TGAAGTAATAAGTAAATTAACAATGTAACTCGTATAAATATACCGGTTTTTGAGAAAACAGGTCT
ACAAAAAGTATCGAAACAAATAAAACAAGTGTCGATACATTTTGGTCTAGAATGTATTTCAAAAT
CAAATGTAAT
Found at i:909777 original size:199 final size:199
Alignment explanation
Indices: 909220--909784 Score: 685
Period size: 199 Copynumber: 2.8 Consensus size: 199
909210 AGTGCACAAC
* * * * * * * *
909220 AAAGTTTCGATACATTTATAACAAGTGTCGATCACAAAAACATCGAAACCCATAATTATAATGTA
1 AAAGTTTCGATACATTTATAAAAAGTATCGACCCCAAATACATAGAGA-CCAAAATTATAATGTA
* *
909285 ATAGGTAAATTTACAATGTAACC-GTTTAAATTTACCTGTTTTATGAGAAAATAGGTCTAA-ATA
65 ATAGGTCAATTTACAATGTAACCGGTTTAAATTTACCAGTTTTATGAGAAAATAGGTC-AACATA
*
909348 ATGTATCGAAACTTTATT-TATTTGTGTCGATACATTTTATCCATAATGAATTCCCAAATTATGT
129 ATGTATCGAAACTTT-TTATATTTGTGTCGATAC-TTTTATCCATAATGAATTCCCAAATGATGT
* *
909412 GCACGCTT
192 CCACGCAT
* *
909420 AAAGTGTCGATACATTTATTAAAAGTATCGACCCCAAATACATAGAGACCAAAAATTATAATGTA
1 AAAGTTTCGATACATTTATAAAAAGTATCGACCCCAAATACATAGAGACC-AAAATTATAATGTA
* * * * *
909485 ATAGGTCACTTTACAATGTAATCGGTTTAAATTTACCAATTTTATGAGCAAATAGGTCTACATAA
65 ATAGGTCAATTTACAATGTAACCGGTTTAAATTTACCAGTTTTATGAGAAAATAGGTCAACATAA
* * * *
909550 TGTATCGATA-TTGTTTATATTTGTGTCGATACTTATT-TCCATAATTAA-TGCCAACTGATGTC
130 TGTATCGAAACTT-TTTATATTTGTGTCGATACTT-TTATCCATAATGAATTCCCAAATGATGTC
909612 CACGCAT
193 CACGCAT
*
909619 AAAGTTTCGATACATTTATAAAAAGTATCGACCCCAAATACATTGAGACCAGAAATTATAATGTA
1 AAAGTTTCGATACATTTATAAAAAGTATCGACCCCAAATACATAGAGACCA-AAATTATAATGTA
* * **
909684 ATAGGTCAATTTACAATGTAACCGGTTGAAATTTACCGGTGTAAAT-AGAAAATAGGTCAACATA
65 ATAGGTCAATTTACAATGTAACCGGTTTAAATTTACCAGT-TTTATGAGAAAATAGGTCAACATA
* * * * * *
909748 ATGTGTTGACACTTTTTAAATTCGTGTCGACACTTTT
129 ATGTATCGAAACTTTTTATATTTGTGTCGATACTTTT
909785 TAAAATTACG
Statistics
Matches: 314, Mismatches: 42, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
198 3 0.01
199 155 0.49
200 94 0.30
201 62 0.20
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (199 bp):
AAAGTTTCGATACATTTATAAAAAGTATCGACCCCAAATACATAGAGACCAAAATTATAATGTAA
TAGGTCAATTTACAATGTAACCGGTTTAAATTTACCAGTTTTATGAGAAAATAGGTCAACATAAT
GTATCGAAACTTTTTATATTTGTGTCGATACTTTTATCCATAATGAATTCCCAAATGATGTCCAC
GCAT
Found at i:913746 original size:181 final size:176
Alignment explanation
Indices: 913246--913917 Score: 742
Period size: 181 Copynumber: 3.8 Consensus size: 176
913236 GTAAATTAAC
* * * *
913246 AGTGTCGATACTTTAATATAAGTATCGACACTTT-TGGAAATAAAAAGAGAAGAAGTTATAGCGC
1 AGTGTCGATAATTAAATATAAGTATCGACACTTTCT-GAATTTAAAAGAGAAGAAGTTATAGCGC
* * ** * *
913310 CTAAAAAGTGTCAATACTTTAAAAAAATGTATCGATCCATAACAATATTACAGGTAAAAATATGA
65 CTAAAAAGTGTCGACACTTTATGAAAATGTATCGATCCATAACAATATAACAGCTAAAAATATGA
* * * *
913375 CAAAATCGATCTCAAAATGACAAAACCGGTAAAATG-CTACCAGATATATTGCA
130 CAAAACCGGTCTCAAAATGACAAAACAGGTAAAA-GACTACC-G----A-TGAA
* *
913428 AGTGTCGATAATTTAATATAAGTATCGATACTTTCTGAATTTAAAAGAGAAG-A--TATAGCGCC
1 AGTGTCGATAATTAAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCC
* *
913490 TAAAAAGTGTCGACACTTTATGAAAA--T-T-GATCTATAACAATATAACAGCTAAAAATATGAT
66 TAAAAAGTGTCGACACTTTATGAAAATGTATCGATCCATAACAATATAACAGCTAAAAATATGAC
*
913551 AAAACCGTTCTCAAAATGACAAAACAGGTAAATA-ACTACC-A-G-A
131 AAAACCGGTCTCAAAATGACAAAACAGGTAAA-AGACTACCGATGAA
* *
913594 AGTGTCGATACTTAAATATAAGTATCGACACTTTTTGAATTTAAATAAAAGAAAAGAGAAGAAGT
1 AGTGTCGATAATTAAATATAAGTATCGACACTTTCTGAA-TT---T-----AAAAGAGAAGAAGT
* * ** *
913659 TATAGCGCCTATAAAGTGTCGATAC-TTAAAAAAATGTATCGATCCATAACAATATAACAGGTAA
57 TATAGCGCCTAAAAAGTGTCGACACTTTATGAAAATGTATCGATCCATAACAATATAACAGCTAA
* *
913723 AAATATGACAAAACCGGTCTCAAAATGACAAAACCGGTAAAAGGCTACCGGATATGTTGAA
122 AAATATGACAAAACCGGTCTCAAAATGACAAAACAGGTAAAAGACTACC-G--A---TGAA
*
913784 AGTGTCGATAATTTAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCC
1 AGTGTCGATAATTAAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCC
* * *
913849 TAAAAAGTGTCGACACTTTATGAAAATGTATCGATCGATAACAATATAACAACTAAAAATATGAG
66 TAAAAAGTGTCGACACTTTATGAAAATGTATCGATCCATAACAATATAACAGCTAAAAATATGAC
913914 AAAA
131 AAAA
913918 TATGTCAACA
Statistics
Matches: 420, Mismatches: 40, Indels: 60
0.81 0.08 0.12
Matches are distributed among these distances:
166 36 0.09
167 3 0.01
169 1 0.00
170 1 0.00
175 73 0.17
176 3 0.01
177 8 0.02
178 23 0.05
179 32 0.08
180 2 0.00
181 103 0.25
182 92 0.22
183 1 0.00
185 1 0.00
186 1 0.00
189 3 0.01
190 37 0.09
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.26
Consensus pattern (176 bp):
AGTGTCGATAATTAAATATAAGTATCGACACTTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCC
TAAAAAGTGTCGACACTTTATGAAAATGTATCGATCCATAACAATATAACAGCTAAAAATATGAC
AAAACCGGTCTCAAAATGACAAAACAGGTAAAAGACTACCGATGAA
Done.