Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008256.1 Hibiscus syriacus cultivar Beakdansim tig00110909_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 250029
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:1092 original size:13 final size:13
Alignment explanation
Indices: 1074--1111 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
1064 CCGTACTCCG
1074 CGCCGGCCACCGC
1 CGCCGGCCACCGC
1087 CGCCGGCCACCGC
1 CGCCGGCCACCGC
1100 CGCCGGCCACCG
1 CGCCGGCCACCG
1112 TAACGGTGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.08, C:0.61, G:0.32, T:0.00
Consensus pattern (13 bp):
CGCCGGCCACCGC
Found at i:1808 original size:3 final size:3
Alignment explanation
Indices: 1800--1937 Score: 174
Period size: 3 Copynumber: 46.3 Consensus size: 3
1790 TTATTTATTA
* *
1800 AAT AAT AAT AAT ATAT AAT AAT -AT AAT ATT AAT AAT AAT ACT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
1845 -AT AAT AAT AAT AAT AAT AAT AA- AAT AAT AAT ACT AAAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
* * * *
1889 AAT AAT ATT AAT AAT ATT AAT AAT GAT AAT AAT AAT ATT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1937 A
1 A
1938 TAAAATGGAT
Statistics
Matches: 116, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
2 6 0.05
3 105 0.91
4 5 0.04
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:2499 original size:112 final size:113
Alignment explanation
Indices: 2227--3211 Score: 1495
Period size: 111 Copynumber: 8.9 Consensus size: 113
2217 TGATATCAAC
*
2227 AAAGGTTGAACAAGCTCTTC-C-TTATGAAACTTCTTCTTCCTTCTTCAGATGAGTTC-TCTCAT
1 AAAGGTTGAACAAGTTCTTCTCATTATG-AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * * * * **
2289 TCATGAACTTTCT-TGG-CATGTTGATCCATCAAATGATGAATTTAAACA
65 T-ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAGGCA
*
2337 AAAAG-TGAACAAGTT-TT-TCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT-ATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
2398 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAGGTA
66 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAGGCA
* *
2446 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
2511 ATGAA-TTTCTCTGGAAAAGATGATCCA-CAAATGATGGTTTCAGGCA
66 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAGGCA
2557 AAAGGTTGAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTT-TTCAGATGAGTTCTT-TCAT
1 AAAGGTTG-AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
2620 TATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAGGCA
65 TATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAGGCA
*
2669 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTT-TTATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
2733 CATGAACTTTCTTTGG-AAAGATGATCCACCAAATGATGGATTCAGGC-
66 -ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAGGCA
*
2780 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* *
2845 ATGAACTTTCTTTGGAAAAGATGATCCACCAAATGATGGATTCAGGTA
66 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAGGCA
*
2893 AAAGGTTGAACAAGTTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAAATGAG---TTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
2954 CATGAACTTTCT-TGGAAAAGATGATCCACCAAATGATGGATTCAGGTA
66 -ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAGGCA
3002 AAAGGTTGAACAA-TTCTTCTCATTATGAACTTCTTCTT-CTTCTTCAGATGAG-TCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
3064 ATGAACTTTCTCTGGAAAAGATGATCCACCAAAATGATGGATTCAGGCA
66 ATGAACTTTCTCTGGAAAAGATGATCCACC-AAATGATGGATTCAGGCA
3113 AAAGGTTGAACAAGTT-TTCTCATTATGAAC-TC-TCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * *
3175 ATGAACCTTCTCTGG-TATGATGATCCATCAAATGATG
66 ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATG
3212 AATTTGAATC
Statistics
Matches: 817, Mismatches: 32, Indels: 53
0.91 0.04 0.06
Matches are distributed among these distances:
107 11 0.01
108 67 0.08
109 132 0.16
110 87 0.11
111 239 0.29
112 230 0.28
113 51 0.06
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (113 bp):
AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTTCTCTGGAAAAGATGATCCACCAAATGATGGATTCAGGCA
Found at i:2632 original size:223 final size:224
Alignment explanation
Indices: 2227--3211 Score: 1494
Period size: 223 Copynumber: 4.5 Consensus size: 224
2217 TGATATCAAC
* *
2227 AAAGGTTGAACAAGCTCTTC-C-TTATGAAACTTCTTCTTCCTTCTTCAGATGAGTTCTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATG-AACTTCTTCTTCCTTCTTCAGATGAGTTTTCTCATT
* * * * * * ** *
2290 CATGAACTTTCTTGGCATGTTGATCCATCAAATGATGAATTTAAACAAAAAG-TGAACAAGTT-T
65 CATGAACTTTCTTGGAAAGATGATCCACCAAATGATGGATTCAGGCAAAAGGTTGAACAAGTTCT
2353 T-TCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT-ATTATGAACTTTCTCTGGAAA
130 TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
*
2416 AGATGATCCACCAAATGATGGATTCAGGTA
195 AGATGATCCACCAAATGATGGATTCAGGCA
*
2446 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTT-TTCTCATT
*
2511 -ATGAA-TTTCTCTGGAAAAGATGATCCA-CAAATGATGGTTTCAGGCAAAAGGTTGAAACAAGT
65 CATGAACTTTCT-TGG-AAAGATGATCCACCAAATGATGGATTCAGGCAAAAGGTTG-AACAAGT
2573 TCTTCTCATTATGAACTTCTTCTTCCTT-TTCAGATGAGTTCTT-TCATTATGAACTTTCTCTGG
127 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
2636 AAAAGATGATCCACCAAATGATGGATTCAGGCA
192 AAAAGATGATCCACCAAATGATGGATTCAGGCA
*
2669 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTT-TTATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTT-TTCTCATT
*
2733 CATGAACTTTCTTTGGAAAGATGATCCACCAAATGATGGATTCAGGC-AAAGGTTGAACAAATTC
65 CATGAACTTTC-TTGGAAAGATGATCCACCAAATGATGGATTCAGGCAAAAGGTTGAACAAGTTC
*
2797 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTTTGGAA
129 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAA
*
2862 AAGATGATCCACCAAATGATGGATTCAGGTA
194 AAGATGATCCACCAAATGATGGATTCAGGCA
*
2893 AAAGGTTGAACAAGTTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAAATGAG--TTCTCATTC
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTTTCTCATTC
*
2955 ATGAACTTTCTTGGAAAAGATGATCCACCAAATGATGGATTCAGGTAAAAGGTTGAACAA-TTCT
66 ATGAACTTTCTTGG-AAAGATGATCCACCAAATGATGGATTCAGGCAAAAGGTTGAACAAGTTCT
3019 TCTCATTATGAACTTCTTCTT-CTTCTTCAGATGAG-TCTTCTCATTATGAACTTTCTCTGGAAA
130 TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
3082 AGATGATCCACCAAAATGATGGATTCAGGCA
195 AGATGATCCACC-AAATGATGGATTCAGGCA
3113 AAAGGTTGAACAAGTT-TTCTCATTATGAAC-TC-TCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTT-TTCTCATT
* * * *
3175 -ATGAACCTTCTCTGGTATGATGATCCATCAAATGATG
65 CATGAACTTTCT-TGGAAAGATGATCCACCAAATGATG
3212 AATTTGAATC
Statistics
Matches: 711, Mismatches: 30, Indels: 49
0.90 0.04 0.06
Matches are distributed among these distances:
218 18 0.03
219 77 0.11
220 137 0.19
221 104 0.15
222 60 0.08
223 186 0.26
224 128 0.18
225 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (224 bp):
AAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTTTCTCATTC
ATGAACTTTCTTGGAAAGATGATCCACCAAATGATGGATTCAGGCAAAAGGTTGAACAAGTTCTT
CTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAA
GATGATCCACCAAATGATGGATTCAGGCA
Found at i:3890 original size:52 final size:51
Alignment explanation
Indices: 3827--3938 Score: 163
Period size: 52 Copynumber: 2.2 Consensus size: 51
3817 TCCAAATTAA
*
3827 ATGCT-TGATTCTGTCCAATCAGATCAGATAACTCAAAGAACACTTCCAGAAG
1 ATGCTATG-TTCT-TCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
* *
3879 ATGCTATATTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
1 ATGCTATGTTCT-TCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
3931 ATGCTATG
1 ATGCTATG
3939 AATTTCTTCT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
52 54 0.98
53 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (51 bp):
ATGCTATGTTCTTCCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
Found at i:4137 original size:50 final size:50
Alignment explanation
Indices: 3952--4408 Score: 824
Period size: 50 Copynumber: 9.0 Consensus size: 50
3942 TTCTTCTTCC
3952 TTCTTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
1 TTCTTC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
*
4003 TTCTGTCCAACCAGATCAGACAACTCAAAGAACACTTCCAGAAGATGCTATG
1 TTCT-T-CAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
4055 TTCTTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
1 TTCTTC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
4106 TTCTTCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
1 TTCTTCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
4156 TTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
1 TTCT-TC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
4208 TTCTTCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
1 TTCTTCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
4258 TTCTTCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
1 TTCTTCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
4308 TTCTTCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
1 TTCTTCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
*
4358 TTCTGTCCAACCAGATCAGACAACTCAAAGAACACTTCCAGAAGATGCTAT
1 TTCT-T-CAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
4409 TGAGCACATA
Statistics
Matches: 396, Mismatches: 3, Indels: 13
0.96 0.01 0.03
Matches are distributed among these distances:
50 197 0.50
51 59 0.15
52 139 0.35
53 1 0.00
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (50 bp):
TTCTTCAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
Found at i:4212 original size:102 final size:101
Alignment explanation
Indices: 3952--4408 Score: 844
Period size: 102 Copynumber: 4.5 Consensus size: 101
3942 TTCTTCTTCC
3952 TTCTTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTCCAACCAG
1 TTCTTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCT-T-CAACCAG
*
4017 ATCAGACAACTCAAAGAACACTTCCAGAAGATGCTATG
64 ATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
4055 TTCTTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTTCAACCAGAT
1 TTCTTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTTCAACCAGAT
4120 CAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
66 CAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
4156 TTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTTCAACCAGA
1 TTCT-TCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTTCAACCAGA
4221 TCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
65 TCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
4258 TTCTTC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTTCAACCAGAT
1 TTCTTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTTCAACCAGAT
4322 CAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
66 CAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
* *
4358 TTCTGTCCAACCAGATCAGACAACTCAAAGAACACTTCCAGAAGATGCTAT
1 TTCT-TCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
4409 TGAGCACATA
Statistics
Matches: 349, Mismatches: 2, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
100 98 0.28
101 52 0.15
102 144 0.41
103 55 0.16
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (101 bp):
TTCTTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTTCAACCAGAT
CAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
Found at i:4314 original size:202 final size:205
Alignment explanation
Indices: 3952--4408 Score: 859
Period size: 202 Copynumber: 2.2 Consensus size: 205
3942 TTCTTCTTCC
3952 TTCT-TCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTCCAACCA
1 TTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTCCAACCA
4016 GATCAGACAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTTCTAACCAGATCAGATAACTCA
66 GATCAGACAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTTCTAACCAGATCAGATAACTCA
4081 AAGAACACTTCCAGAAGATGCTATGTTCTTCAACCAGATCAGATAACTCAAAGAACACTTCCAGA
131 AAGAACACTTCCAGAAGATGCTATGTTCTTCAACCAGATCAGATAACTCAAAGAACACTTCCAGA
4146 AGATGCTATG
196 AGATGCTATG
4156 TTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCT-T-CAACCA
1 TTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTCCAACCA
*
4219 GATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTTC-AACCAGATCAGATAACTCA
66 GATCAGACAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTTCTAACCAGATCAGATAACTCA
4283 AAGAACACTTCCAGAAGATGCTATGTTCTTCAACCAGATCAGATAACTCAAAGAACACTTCCAGA
131 AAGAACACTTCCAGAAGATGCTATGTTCTTCAACCAGATCAGATAACTCAAAGAACACTTCCAGA
4348 AGATGCTATG
196 AGATGCTATG
* *
4358 TTCTGTCCAACCAGATCAGACAACTCAAAGAACACTTCCAGAAGATGCTAT
1 TTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
4409 TGAGCACATA
Statistics
Matches: 249, Mismatches: 3, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
202 143 0.57
203 50 0.20
204 5 0.02
205 51 0.20
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (205 bp):
TTCTGTCTAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTCCAACCA
GATCAGACAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTTCTAACCAGATCAGATAACTCA
AAGAACACTTCCAGAAGATGCTATGTTCTTCAACCAGATCAGATAACTCAAAGAACACTTCCAGA
AGATGCTATG
Found at i:5350 original size:6 final size:6
Alignment explanation
Indices: 5339--5418 Score: 71
Period size: 6 Copynumber: 13.8 Consensus size: 6
5329 ACCTTGACCC
* * *
5339 TTCTTT TTCTTT TTC-TT TT-TTT TTCTTCT TTTTTT TTCCTT TTCATT
1 TTCTTT TTCTTT TTCTTT TTCTTT TTCTT-T TTCTTT TTCTTT TTCTTT
*
5386 TTCTATT TT-TTT TT-TTT TT-TTT TTTTTT TTCTT
1 TTCT-TT TTCTTT TTCTTT TTCTTT TTCTTT TTCTT
5419 CAAGCATAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
5 22 0.35
6 32 0.51
7 9 0.14
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (6 bp):
TTCTTT
Found at i:5352 original size:1 final size:1
Alignment explanation
Indices: 5342--5415 Score: 58
Period size: 1 Copynumber: 74.0 Consensus size: 1
5332 TTGACCCTTC
* * * * ** ** * *
5342 TTTTTCTTTTTCTTTTTTTTTCTTCTTTTTTTTTCCTTTTCATTTTCTATTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
5407 TTTTTTTTT
1 TTTTTTTTT
5416 CTTCAAGCAT
Statistics
Matches: 56, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 56 1.00
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (1 bp):
T
Found at i:15990 original size:18 final size:18
Alignment explanation
Indices: 15967--16001 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
15957 ATACTTGCAA
15967 ATAAAACAT-ATAAATATT
1 ATAAAA-ATAATAAATATT
15985 ATAAAAATAATAAATAT
1 ATAAAAATAATAAATAT
16002 AAAAAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (18 bp):
ATAAAAATAATAAATATT
Found at i:16789 original size:19 final size:19
Alignment explanation
Indices: 16768--16803 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
16758 AATATATTTA
16768 AAAACA-ATAAAATAAATT
1 AAAACATATAAAATAAATT
16786 AAAACATATAAAATAAAT
1 AAAACATATAAAATAAAT
16804 GACTAAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAACATATAAAATAAATT
Found at i:16895 original size:11 final size:10
Alignment explanation
Indices: 16876--16901 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
16866 ATTAAATATG
16876 TTATTTTTTT
1 TTATTTTTTT
16886 TTATTTTTTT
1 TTATTTTTTT
16896 TTATTT
1 TTATTT
16902 AGTGACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (10 bp):
TTATTTTTTT
Found at i:17375 original size:13 final size:13
Alignment explanation
Indices: 17357--17385 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
17347 CCACCGTACT
17357 CCGCCGCCGGCCA
1 CCGCCGCCGGCCA
17370 CCGCCGCCGGCCA
1 CCGCCGCCGGCCA
17383 CCG
1 CCG
17386 TAACGGTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.62, G:0.31, T:0.00
Consensus pattern (13 bp):
CCGCCGCCGGCCA
Found at i:18090 original size:3 final size:3
Alignment explanation
Indices: 18082--18232 Score: 221
Period size: 3 Copynumber: 49.7 Consensus size: 3
18072 TTATTTATTA
* *
18082 AAT AAT AAT ATAT AAT AAT ATAT AAT ATT AAT AAT AAT ACT AAT AAT
1 AAT AAT AAT A-AT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
*
18129 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
18177 AAT AAT ATT AAT AAT ATT AAT AAT GAT AAT AAT AAT ATT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
18225 AAT AAT AA
1 AAT AAT AA
18233 AATGGATAAA
Statistics
Matches: 132, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
3 126 0.95
4 6 0.05
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:24584 original size:2 final size:2
Alignment explanation
Indices: 24577--24603 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24567 TAATTTAGCC
24577 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
24604 TTAATATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25053 original size:43 final size:43
Alignment explanation
Indices: 25005--25110 Score: 126
Period size: 42 Copynumber: 2.5 Consensus size: 43
24995 TGCTCGAATA
* * *
25005 CTCTTCAGAGTAATCAGATCTGAAAAAAGGATTTGTTTCACTG
1 CTCTTCAGAGAAATCAGATCTGAAAAAAGAATATGTTTCACTG
* * * *
25048 TTCTTCAGAAAAATCAG-TGTGGAAAAAGAATATGTTTCACTG
1 CTCTTCAGAGAAATCAGATCTGAAAAAAGAATATGTTTCACTG
25090 CTCTTCA-AGGAAATCAGATCT
1 CTCTTCAGA-GAAATCAGATCT
25111 TGAGATTTTG
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
41 1 0.02
42 34 0.67
43 16 0.31
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (43 bp):
CTCTTCAGAGAAATCAGATCTGAAAAAAGAATATGTTTCACTG
Found at i:25232 original size:128 final size:128
Alignment explanation
Indices: 25067--25507 Score: 322
Period size: 128 Copynumber: 3.4 Consensus size: 128
25057 AAAATCAGTG
* * *
25067 TGGAAAAAGAATATGTTTCACTGCTCTTCAAGGAAATCAGATCTTGAGATTTTGATTCACT-TCA
1 TGGAAAAAGAATATGCTTCACTACTCTTCAAGGAAATCAGATCTTGAAATTTTGATTCACTCT-A
* * *
25131 CTACCCCTT-AGAG-AAGATTGAATCAG-GATTGACTTGCTTCGCTGCTCTTTAGGAAGATCAAA
65 CT-CCCCTTCACAGAAAG-TTGAATCAGAG-TTAACTTGCTTCACTGCTCTTTAGGAAGATCAAA
25193 TC
127 TC
* *
25195 TGGAAAAAGGATTTGCTTCACTACTCTTC-AGGAAAATCAGATCTTGAAATTTTGATTCACTCTA
1 TGGAAAAAGAATATGCTTCACTACTCTTCAAGG-AAATCAGATCTTGAAATTTTGATTCACTCTA
* * * * *
25259 CTGCTCTTCACATAAAGTTGAATCAGAGTTAATTTGCTTCACTGTTCTTTAGGAAGATCAAATC
65 CTCCCCTTCACAGAAAGTTGAATCAGAGTTAACTTGCTTCACTGCTCTTTAGGAAGATCAAATC
** * * ** * ** * * *
25323 TGGGAATTAG-ATGTACTTCACCGCTCTTCGACAAAATTAGAT-TTGGAAACTTTGATTCACTTT
1 T-GGAAAAAGAATATGCTTCACTACTCTTCAAGGAAATCAGATCTT-GAAATTTTGATTCACTCT
* * * ** * * * * * * * *
25386 GCTTCTCTTCAGGGAATGTTGAATCAGTGATGATTTGCTTCACTGCTCTTCAAGAAGATCAAATT
64 ACTCCCCTTCACAGAAAGTTGAATCAGAGTTAACTTGCTTCACTGCTCTTTAGGAAGATCAAATC
* * * * * ** * * *
25451 TGGGAAATGGATTTACCACACTACTCTTCAA-GAAAGTTAGATCTGGAAACTTTGATT
1 TGGAAAAAGAATATGCTTCACTACTCTTCAAGGAAA-TCAGATCTTGAAATTTTGATT
25508 TACTTTGTTG
Statistics
Matches: 253, Mismatches: 49, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
127 16 0.06
128 224 0.89
129 13 0.05
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (128 bp):
TGGAAAAAGAATATGCTTCACTACTCTTCAAGGAAATCAGATCTTGAAATTTTGATTCACTCTAC
TCCCCTTCACAGAAAGTTGAATCAGAGTTAACTTGCTTCACTGCTCTTTAGGAAGATCAAATC
Found at i:25513 original size:128 final size:127
Alignment explanation
Indices: 25148--25555 Score: 406
Period size: 128 Copynumber: 3.2 Consensus size: 127
25138 TTAGAGAAGA
* * * * *
25148 TTGAATCAGGATTGACTTGCTTCGCTGCTCTTTAGGAAGATCAAATCTGGAAAAAGGATTTGCTT
1 TTGAATCAGGA-TGATTTGCTTCACTGCTCTTTAGGAAGATCAAATCTGGGAAATGGATTTACTT
* * * * * * * *
25213 CACTACTCTTCAGGAAAATCAGATCTTGAAATTTTGATTCACTCTACTGCTCTTCACATAAAG
65 CACTACTCTTCAAGAAAATTAGATCTGGAAACTTTGATTCACTTTGCTTCTCTTCACAGAAAG
* * * * * *
25276 TTGAATCAGAGTTAATTTGCTTCACTGTTCTTTAGGAAGATCAAATCTGGGAATTAGATGTACTT
1 TTGAATCAG-GATGATTTGCTTCACTGCTCTTTAGGAAGATCAAATCTGGGAAATGGATTTACTT
** * * * ** *
25341 CACCGCTCTTCGACAAAATTAGATTTGGAAACTTTGATTCACTTTGCTTCTCTTCAGGGAATG
65 CACTACTCTTCAAGAAAATTAGATCTGGAAACTTTGATTCACTTTGCTTCTCTTCACAGAAAG
* * * **
25404 TTGAATCAGTGATGATTTGCTTCACTGCTCTTCAAGAAGATCAAATTTGGGAAATGGATTTACCA
1 TTGAATCAG-GATGATTTGCTTCACTGCTCTTTAGGAAGATCAAATCTGGGAAATGGATTTACTT
* * * *
25469 CACTACTCTTCAAGAAAGTTAGATCTGGAAACTTTGATTTACTTTG-TTGCTCTTTA-AGGAAG
65 CACTACTCTTCAAGAAAATTAGATCTGGAAACTTTGATTCACTTTGCTT-CTCTTCACAGAAAG
* *
25531 ATTGAATCTAGGTTGATTTACTTCA
1 -TTGAATC-AGGATGATTTGCTTCA
25556 TTGTTTACCA
Statistics
Matches: 224, Mismatches: 52, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
127 5 0.02
128 216 0.96
129 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (127 bp):
TTGAATCAGGATGATTTGCTTCACTGCTCTTTAGGAAGATCAAATCTGGGAAATGGATTTACTTC
ACTACTCTTCAAGAAAATTAGATCTGGAAACTTTGATTCACTTTGCTTCTCTTCACAGAAAG
Found at i:26631 original size:99 final size:98
Alignment explanation
Indices: 26452--26631 Score: 265
Period size: 99 Copynumber: 1.8 Consensus size: 98
26442 AAGCAAGAGA
*
26452 AGATTGAGTTTTCTAGAAGAAATGTCCTAAAAAATCAAGAATTAGGTTCCTTGGGGGAAAATCTT
1 AGATTGAGCTTTCTAGAAGAAATGTCCTAAAAAATCAAGAATTAGGTTCCTTGGGGGAAAATCTT
* * *
26517 TAGAAAGACCGAATTGTGATGTTAAGAAATACT
66 TAAAAAGAACAAATTGTGATGTTAAGAAATACT
* *
26550 AGATTGAGCTTTCTAGGATACAA-GTCCTAATAAAATCAAGAATTAGGTTCCTT-GGGGAACAAT
1 AGATTGAGCTTTCTAGAAGA-AATGTCCTAA-AAAATCAAGAATTAGGTTCCTTGGGGGAA-AAT
26613 CTTTAAAAAGAACAAATTG
63 CTTTAAAAAGAACAAATTG
26632 AGATTTCTAT
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
98 30 0.41
99 43 0.59
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (98 bp):
AGATTGAGCTTTCTAGAAGAAATGTCCTAAAAAATCAAGAATTAGGTTCCTTGGGGGAAAATCTT
TAAAAAGAACAAATTGTGATGTTAAGAAATACT
Found at i:26743 original size:114 final size:114
Alignment explanation
Indices: 26538--26826 Score: 350
Period size: 114 Copynumber: 2.5 Consensus size: 114
26528 AATTGTGATG
* * * * * * *
26538 TTAAGAAATACTAGATTGAGCTTTCTAGGATACAAGTCCTAATAAAATCAAGAATTAGGTTCCTT
1 TTAAGAAAGACTAGATTGAACTTTCTATGATACAAGTCTTAAGAAAATCAAGAATGAGGTTACTT
* *
26603 GGGGAACAATCTTTAAAAAGAACAAATTGA-GATTTCTATAGAAACAATA
66 GAGGAACAATCTTTAAAAAGAACAAATTGATG-TTTCTAAAGAAACAATA
* * *
26652 TTAAGAAAGACTAGATTGAATTTTCTATGATACAAGTCTTAAGAAAATCAATAATGAGGTTATTT
1 TTAAGAAAGACTAGATTGAACTTTCTATGATACAAGTCTTAAGAAAATCAAGAATGAGGTTACTT
* * * **
26717 GAGGAATAATCTTTAAAAATACCAAATTGATGTTTCTAAAGAAATGATA
66 GAGGAACAATCTTTAAAAAGAACAAATTGATGTTTCTAAAGAAACAATA
* * *
26766 TTAAGAAAGACTAGATTGAACTTTCTAAT-ATATAAGTCTTAA-AAGAGTCAAGATTGAGGTT
1 TTAAGAAAGACTAGATTGAACTTTCT-ATGATACAAGTCTTAAGAA-AATCAAGAATGAGGTT
26827 TCTAGGGAAA
Statistics
Matches: 150, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
113 2 0.01
114 145 0.97
115 3 0.02
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (114 bp):
TTAAGAAAGACTAGATTGAACTTTCTATGATACAAGTCTTAAGAAAATCAAGAATGAGGTTACTT
GAGGAACAATCTTTAAAAAGAACAAATTGATGTTTCTAAAGAAACAATA
Found at i:26859 original size:114 final size:112
Alignment explanation
Indices: 26533--26859 Score: 299
Period size: 114 Copynumber: 2.9 Consensus size: 112
26523 GACCGAATTG
* * * ** * *
26533 TGATGTTAAGAAATACTAGATTGAGCTTTCTAGGATACAAGTCCTAATAAAATCAAGAATT-AGG
1 TGATATTAAGAAAGACTAGATTGAACTTTCTAATATACAAGTCTTAAGAAAATCAAG-ATTGAGG
* * * *
26597 TTCCTTGGGGAACAATCTTTAAAAAGAACAAATTGAGATTTCTATAGAAA
65 TTTCTTGGGAAACAA-CTTTAAAATG-ACAAATTGAGATTTCTAAAGAAA
** * * *
26647 CAATATTAAGAAAGACTAGATTGAATTTTCT-ATGATACAAGTCTTAAGAAAATCAATAATGAGG
1 TGATATTAAGAAAGACTAGATTGAACTTTCTAAT-ATACAAGTCTTAAGAAAATCAAGATTGAGG
*
26711 TTAT-TTGAGGAATA-ATCTTTAAAAAT-ACCAAATTGATG-TTTCTAAAGAAA
65 TT-TCTTG-GGAA-ACAACTTT-AAAATGA-CAAATTGA-GATTTCTAAAGAAA
* *
26761 TGATATTAAGAAAGACTAGATTGAACTTTCTAATATATAAGTCTTAA-AAGAGTCAAGATTGAGG
1 TGATATTAAGAAAGACTAGATTGAACTTTCTAATATACAAGTCTTAAGAA-AATCAAGATTGAGG
* *
26825 TTTCTAGGGAAACAACCTTAAGAATGACAGAATTG
65 TTTCTTGGGAAACAACTTTAA-AATGACA-AATTG
26860 GTTTCGCATA
Statistics
Matches: 171, Mismatches: 27, Indels: 30
0.75 0.12 0.13
Matches are distributed among these distances:
112 3 0.02
113 19 0.11
114 137 0.80
115 11 0.06
116 1 0.01
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.31
Consensus pattern (112 bp):
TGATATTAAGAAAGACTAGATTGAACTTTCTAATATACAAGTCTTAAGAAAATCAAGATTGAGGT
TTCTTGGGAAACAACTTTAAAATGACAAATTGAGATTTCTAAAGAAA
Found at i:28889 original size:20 final size:20
Alignment explanation
Indices: 28864--28907 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
28854 CCTGATGCCT
28864 CCATGTGGAAATCAAAAGTA
1 CCATGTGGAAATCAAAAGTA
28884 CCATGTGGAAATCAAAAGTA
1 CCATGTGGAAATCAAAAGTA
28904 CCAT
1 CCAT
28908 TTGGGTCGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.20
Consensus pattern (20 bp):
CCATGTGGAAATCAAAAGTA
Found at i:30620 original size:2 final size:2
Alignment explanation
Indices: 30613--30645 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
30603 GTTATCGTCT
30613 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
30646 TAATATTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:30714 original size:26 final size:25
Alignment explanation
Indices: 30664--30714 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
30654 ATCACTTATA
*
30664 TTATATAATATATATTCATACGCATT
1 TTATATAATATATATACATA-GCATT
30690 TTATATAATATAAATATACAT-GCAT
1 TTATATAATAT--ATATACATAGCAT
30715 ATAATATACG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
26 15 0.68
28 7 0.32
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.43
Consensus pattern (25 bp):
TTATATAATATATATACATAGCATT
Found at i:36047 original size:13 final size:13
Alignment explanation
Indices: 36029--36054 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36019 TACGATCAGG
36029 GCACCTAAAGTGT
1 GCACCTAAAGTGT
36042 GCACCTAAAGTGT
1 GCACCTAAAGTGT
36055 AACATTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (13 bp):
GCACCTAAAGTGT
Found at i:37819 original size:17 final size:17
Alignment explanation
Indices: 37788--37820 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
37778 AAAATATTAT
37788 TTATTATTTATTTTAAA
1 TTATTATTTATTTTAAA
37805 TTATT-TTTATATTTAA
1 TTATTATTTAT-TTTAA
37821 CAATGTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTATTATTTATTTTAAA
Found at i:40706 original size:14 final size:14
Alignment explanation
Indices: 40687--40715 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
40677 TTCAAATTGG
40687 GTTGACCGATTCAA
1 GTTGACCGATTCAA
40701 GTTGACCGATTCAA
1 GTTGACCGATTCAA
40715 G
1 G
40716 CTATTGTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (14 bp):
GTTGACCGATTCAA
Found at i:41615 original size:26 final size:26
Alignment explanation
Indices: 41566--41616 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
41556 AATTAAAAGT
*
41566 TAAAAAATAATTATTAAACTAAAGAC
1 TAAAAAATAATTATTAAAATAAAGAC
*
41592 TAAAAAATAATTGTTAAAATAAAGA
1 TAAAAAATAATTATTAAAATAAAGA
41617 TTAAGTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.27
Consensus pattern (26 bp):
TAAAAAATAATTATTAAAATAAAGAC
Found at i:43813 original size:24 final size:24
Alignment explanation
Indices: 43781--43832 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
43771 GGGGACATTG
43781 TGGATACAAAACTGAAGTTGAATT
1 TGGATACAAAACTGAAGTTGAATT
43805 TGGATACAAAACTGAAGTTGAATT
1 TGGATACAAAACTGAAGTTGAATT
43829 TGGA
1 TGGA
43833 AGATGATAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (24 bp):
TGGATACAAAACTGAAGTTGAATT
Found at i:47741 original size:24 final size:24
Alignment explanation
Indices: 47709--47780 Score: 99
Period size: 24 Copynumber: 2.9 Consensus size: 24
47699 CTATTCTTTC
*
47709 GCTTTAATTGAACTCAAATTTTAG
1 GCTTCAATTGAACTCAAATTTTAG
*
47733 GCTTCAATTGAGCTCAAATTTTAG
1 GCTTCAATTGAACTCAAATTTTAG
*
47757 GCTTCAATCGAACTTCTAAATTTT
1 GCTTCAATTGAAC-TC-AAATTTT
47781 TTTTTGAGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
24 33 0.79
25 2 0.05
26 7 0.17
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (24 bp):
GCTTCAATTGAACTCAAATTTTAG
Found at i:59209 original size:17 final size:18
Alignment explanation
Indices: 59178--59217 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
59168 TTAATAGTGA
59178 TTATTATAAAATATATTT
1 TTATTATAAAATATATTT
*
59196 TTATTAT-AATTATATTT
1 TTATTATAAAATATATTT
59213 TTATT
1 TTATT
59218 TGTATTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTATTATAAAATATATTT
Found at i:70747 original size:52 final size:52
Alignment explanation
Indices: 70650--70751 Score: 141
Period size: 52 Copynumber: 2.0 Consensus size: 52
70640 CGAATGGTGC
* * * *
70650 AGAGCAATGAATGATGAAATTATGGCACTCGATAAGAATTCGACATGGGTAT
1 AGAGCAATGAAGGATGAAATTATGGCAATCGAGAAAAATTCGACATGGGTAT
* * *
70702 AGAGCAATGAAGGATTAAATTATGGTAATCGAGAAAAATTTGACATGGGT
1 AGAGCAATGAAGGATGAAATTATGGCAATCGAGAAAAATTCGACATGGGT
70752 GCTTACGTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.40, C:0.09, G:0.25, T:0.25
Consensus pattern (52 bp):
AGAGCAATGAAGGATGAAATTATGGCAATCGAGAAAAATTCGACATGGGTAT
Found at i:76970 original size:19 final size:17
Alignment explanation
Indices: 76938--76982 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 17
76928 AAAGTGCCTT
*
76938 AAAAAAATTGAC-TTTA
1 AAAAAAATTGACACTTA
76954 AAAAAAACTTGACACTTA
1 AAAAAAA-TTGACACTTA
76972 AAAAAAATTGA
1 AAAAAAATTGA
76983 ATTTCAACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 7 0.27
17 9 0.35
18 10 0.38
ACGTcount: A:0.60, C:0.09, G:0.07, T:0.24
Consensus pattern (17 bp):
AAAAAAATTGACACTTA
Found at i:79875 original size:31 final size:31
Alignment explanation
Indices: 79763--79884 Score: 131
Period size: 31 Copynumber: 3.9 Consensus size: 31
79753 GTCGAGGGTA
*
79763 TACCTATGTTCTACGGAACATATGGACAGCAT
1 TACCTATGTTCTACGGAACATATGGACAG-TT
* *
79795 TACCTATG-TCTTTC-GAGACATATGGACAGTA
1 TACCTATGTTC-TACGGA-ACATATGGACAGTT
*
79826 TACCTATGTTCTAAGGAACATATGGACAGTT
1 TACCTATGTTCTACGGAACATATGGACAGTT
* * * *
79857 TACCTAGGTTCTTCGGAACCTATAGACA
1 TACCTATGTTCTACGGAACATATGGACA
79885 TTTGCCAAGG
Statistics
Matches: 75, Mismatches: 11, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
31 49 0.65
32 26 0.35
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30
Consensus pattern (31 bp):
TACCTATGTTCTACGGAACATATGGACAGTT
Found at i:84004 original size:64 final size:64
Alignment explanation
Indices: 83922--84078 Score: 165
Period size: 64 Copynumber: 2.5 Consensus size: 64
83912 TTGAAGGTGT
* * * ** * *
83922 ATCGATGCACAGGAAGTGCATCGATGCA-CTCTTTTAA-AATAAATACATCGAATGCAATTCGTG
1 ATCGATGCATAAGTAGTGCATCGATGCATC-CTAGTAATAATAAA-ACATCGAATACAATTCATG
83985 C
64 C
* * *
83986 ATCGATGCATAAGTAGTGCATCGATGCATCCTAGTAATAATACAACATCGAATACATTTTATGC
1 ATCGATGCATAAGTAGTGCATCGATGCATCCTAGTAATAATAAAACATCGAATACAATTCATGC
* * *
84050 ACCGATGCATCAGTAGTGTATCGATGCAT
1 ATCGATGCATAAGTAGTGCATCGATGCAT
84079 ACCTTCATTA
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
64 72 0.92
65 6 0.08
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (64 bp):
ATCGATGCATAAGTAGTGCATCGATGCATCCTAGTAATAATAAAACATCGAATACAATTCATGC
Found at i:84931 original size:31 final size:31
Alignment explanation
Indices: 84844--84970 Score: 132
Period size: 31 Copynumber: 4.1 Consensus size: 31
84834 AGAGTCGAGG
*
84844 GTATACCTATGTTCTACGTAACATATGGACA
1 GTATACCTATGTTCTACGGAACATATGGACA
* *
84875 GAATTACCTATG-TCTTTC-GAGACATATGGACA
1 GTA-TACCTATGTTC-TACGGA-ACATATGGACA
* *
84907 GTATACCTATATTCTAAGGAACATATGGACA
1 GTATACCTATGTTCTACGGAACATATGGACA
* * * *
84938 GTTTACCTAGGTTCTTCGGAACCTATGGACA
1 GTATACCTATGTTCTACGGAACATATGGACA
84969 GT
1 GT
84971 TTCCAAGGAT
Statistics
Matches: 78, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
31 51 0.65
32 27 0.35
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (31 bp):
GTATACCTATGTTCTACGGAACATATGGACA
Found at i:85012 original size:30 final size:30
Alignment explanation
Indices: 84958--85029 Score: 99
Period size: 30 Copynumber: 2.4 Consensus size: 30
84948 GTTCTTCGGA
* * *
84958 ACCTATGGACAGTTTCCAAGGATCTTTATG
1 ACCTCTGGATAGTTACCAAGGATCTTTATG
*
84988 ACCTCTGGATAGTTACCGAGGATCTTTATG
1 ACCTCTGGATAGTTACCAAGGATCTTTATG
*
85018 ACCTCTAGATAG
1 ACCTCTGGATAG
85030 GTCCTTCAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (30 bp):
ACCTCTGGATAGTTACCAAGGATCTTTATG
Found at i:87446 original size:21 final size:21
Alignment explanation
Indices: 87420--87472 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
87410 AGAATAGAGG
87420 GTATCGGTACTCCTAAAAGGA
1 GTATCGGTACTCCTAAAAGGA
87441 GTATCGGTACTCCTAAAAGGA
1 GTATCGGTACTCCTAAAAGGA
87462 GTATCGGTACT
1 GTATCGGTACT
87473 ACCTTTGTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (21 bp):
GTATCGGTACTCCTAAAAGGA
Found at i:90876 original size:20 final size:21
Alignment explanation
Indices: 90846--90885 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
90836 AGCTGTTGGG
90846 GCCTAATGGTATCGATACTAT
1 GCCTAATGGTATCGATACTAT
90867 GCCT-ATGGTATCGATACTA
1 GCCTAATGGTATCGATACTA
90886 CTTTACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (21 bp):
GCCTAATGGTATCGATACTAT
Found at i:91845 original size:24 final size:24
Alignment explanation
Indices: 91808--91862 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
91798 ATTTAATTTT
* *
91808 ATTTTTA-ATATTAATTTTTTGAAC
1 ATTTTTATATATTAA-ATTTAGAAC
*
91832 ATTTTTATAT-TTAAATTTAGAAT
1 ATTTTTATATATTAAATTTAGAAC
91855 ATTTTTAT
1 ATTTTTAT
91863 TTTTTCTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 14 0.52
24 11 0.41
25 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.60
Consensus pattern (24 bp):
ATTTTTATATATTAAATTTAGAAC
Found at i:93327 original size:17 final size:17
Alignment explanation
Indices: 93305--93337 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
93295 TATATTAACA
93305 AAAATA-TATTAAATATC
1 AAAATACTA-TAAATATC
93322 AAAATACTATAAATAT
1 AAAATACTATAAATAT
93338 TAAATGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (17 bp):
AAAATACTATAAATATC
Found at i:94187 original size:21 final size:19
Alignment explanation
Indices: 94148--94200 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
94138 TGTCTAAGGT
94148 ATATTTTA-TT-ATTTTTA
1 ATATTTTATTTAATTTTTA
94165 ATATTTGTATTTAATTTCTTA
1 ATATTT-TATTTAATTT-TTA
94186 ATATTTTATTTAATT
1 ATATTTTATTTAATT
94201 AATTTTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.19
18 2 0.06
19 2 0.06
20 13 0.41
21 9 0.28
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (19 bp):
ATATTTTATTTAATTTTTA
Found at i:101885 original size:22 final size:22
Alignment explanation
Indices: 101859--101914 Score: 112
Period size: 22 Copynumber: 2.5 Consensus size: 22
101849 AGAGACACCG
101859 CCGGCCGCCACTATCCGTCGCT
1 CCGGCCGCCACTATCCGTCGCT
101881 CCGGCCGCCACTATCCGTCGCT
1 CCGGCCGCCACTATCCGTCGCT
101903 CCGGCCGCCACT
1 CCGGCCGCCACT
101915 GCCAGCGGTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.09, C:0.52, G:0.23, T:0.16
Consensus pattern (22 bp):
CCGGCCGCCACTATCCGTCGCT
Found at i:102834 original size:36 final size:38
Alignment explanation
Indices: 102768--102865 Score: 137
Period size: 37 Copynumber: 2.6 Consensus size: 38
102758 CTATATATAT
*
102768 AAAAATATTTTCCAAAACCTATATAATATATA-TTTTTTA
1 AAAAATATTTT-CAAAA-TTATATAATATATACTTTTTTA
*
102807 AAAAATATTTT-AAAATTATATATTATATACTTTTTTA
1 AAAAATATTTTCAAAATTATATAATATATACTTTTTTA
*
102844 AAAAATGTTTTCAAAATTATAT
1 AAAAATATTTTCAAAATTATAT
102866 GGTTTTCAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
36 12 0.22
37 21 0.39
38 10 0.19
39 11 0.20
ACGTcount: A:0.47, C:0.06, G:0.01, T:0.46
Consensus pattern (38 bp):
AAAAATATTTTCAAAATTATATAATATATACTTTTTTA
Found at i:102865 original size:67 final size:64
Alignment explanation
Indices: 102794--102960 Score: 178
Period size: 67 Copynumber: 2.5 Consensus size: 64
102784 ACCTATATAA
* *
102794 TATATATTTTTTAAAAAAT-ATTTTAAAATTATATATTATAT-ACTTTTTTAAAAAATGTTTTCA
1 TATATATGTTTT-AAAAATGATTTTAAAATTATATATTATATGA---TTTT-AAAAATGATTTCA
102857 AAAT
61 AAAT
* * * *
102861 TATAT-GGTTTTCAAAAATGTTTTTAAAACTATATATTATATGATTTTCAAAATGATTTCAAAAT
1 TATATATGTTTT-AAAAATGATTTTAAAATTATATATTATATGATTTTAAAAATGATTTCAAAAT
* *
102925 TATACTATGTTTTCAAAATGATTTCAAAATTATATA
1 TATA-TATGTTTTAAAAATGATTTTAAAATTATATA
102961 GTTTTCAAAA
Statistics
Matches: 84, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
64 19 0.23
65 24 0.29
66 15 0.18
67 25 0.30
68 1 0.01
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.47
Consensus pattern (64 bp):
TATATATGTTTTAAAAATGATTTTAAAATTATATATTATATGATTTTAAAAATGATTTCAAAAT
Found at i:102871 original size:29 final size:29
Alignment explanation
Indices: 102839--102894 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
102829 TTATATACTT
*
102839 TTTTAAAAAATGTTTTCAAAATTATATGG
1 TTTTAAAAAATGTTTTCAAAACTATATGG
* *
102868 TTTTCAAAAATGTTTTTAAAACTATAT
1 TTTTAAAAAATGTTTTCAAAACTATAT
102895 ATTATATGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.46
Consensus pattern (29 bp):
TTTTAAAAAATGTTTTCAAAACTATATGG
Found at i:102980 original size:30 final size:30
Alignment explanation
Indices: 102828--102980 Score: 143
Period size: 30 Copynumber: 4.9 Consensus size: 30
102818 AAAATTATAT
* *
102828 ATTATATACTTTTTTAAAAAATGTTTTCAAA
1 ATTATATA-TGTTTTCAAAAATGTTTTCAAA
* *
102859 ATTATAT-GGTTTTCAAAAATGTTTTTAAAA
1 ATTATATATGTTTTCAAAAATG-TTTTCAAA
*
102889 CTATATATTATATGATTTTC-AAAATGATTTCAAA
1 --AT-TA-TATATG-TTTTCAAAAATGTTTTCAAA
*
102923 ATTATACTATGTTTTC-AAAATGATTTCAAA
1 ATTATA-TATGTTTTCAAAAATGTTTTCAAA
102953 ATTATATA-GTTTTCAAAAATAGTTTTCA
1 ATTATATATGTTTTCAAAAAT-GTTTTCA
102981 TTGTTGAGTT
Statistics
Matches: 104, Mismatches: 8, Indels: 21
0.78 0.06 0.16
Matches are distributed among these distances:
28 6 0.06
29 18 0.17
30 40 0.38
31 13 0.12
32 4 0.04
33 2 0.02
34 9 0.09
35 7 0.07
36 5 0.05
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.46
Consensus pattern (30 bp):
ATTATATATGTTTTCAAAAATGTTTTCAAA
Found at i:108118 original size:60 final size:60
Alignment explanation
Indices: 108048--108169 Score: 244
Period size: 60 Copynumber: 2.0 Consensus size: 60
108038 AATAATAAAG
108048 AAGGAAAATAGAATGAAATAAAATCAATAAACATAGTATAATAATTAAGTGAGTGACCAA
1 AAGGAAAATAGAATGAAATAAAATCAATAAACATAGTATAATAATTAAGTGAGTGACCAA
108108 AAGGAAAATAGAATGAAATAAAATCAATAAACATAGTATAATAATTAAGTGAGTGACCAA
1 AAGGAAAATAGAATGAAATAAAATCAATAAACATAGTATAATAATTAAGTGAGTGACCAA
108168 AA
1 AA
108170 TAAAAATATG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.57, C:0.07, G:0.15, T:0.21
Consensus pattern (60 bp):
AAGGAAAATAGAATGAAATAAAATCAATAAACATAGTATAATAATTAAGTGAGTGACCAA
Found at i:109401 original size:37 final size:34
Alignment explanation
Indices: 109360--109748 Score: 268
Period size: 35 Copynumber: 10.9 Consensus size: 34
109350 TTATATATAA
109360 AAAAATATTTTCCAAAACCTATATAATATATATTTTT
1 AAAAATATTTT--AAAA-CTATATAATATATATTTTT
* * *
109397 AAAAATATTTTAAAATTTTATATTATATACTTTTTT
1 AAAAATATTTTAAAACTATATAATATATA--TTTTT
* * * *
109433 AAAAAAATGTTTTCAAA--AT-T-ATATA-GTTTTC
1 --AAAAATATTTTAAAACTATATAATATATATTTTT
* * * *
109464 AAAAATGTTTTTAAAACTATATATTATATGTTTTC
1 AAAAAT-ATTTTAAAACTATATAATATATATTTTT
*
109499 AAAAATGATTTCAAAACTATATAATATATATATGTTTT
1 AAAAAT-ATTTTAAAACTATAT-A-ATATATAT-TTTT
* * *
109537 CAAAATGTTTTTTAAAAACTATATATATATATATATTT
1 -AAAA-ATATTTT-AAAACTATATA-ATATATATTTTT
109575 -AAAATATTTTAAAAACTATATAATATATATATTTT
1 AAAAATATTTT-AAAACTATATAATATATAT-TTTT
* * *
109610 CAAAAATGTTTTAAAAACTATATATTATATTAATTTT
1 -AAAAATATTTT-AAAACTATATAATATA-TATTTTT
* * *
109647 CAAAATGTTTTTAAAAACTATATAATATATATTTTC
1 AAAAAT-ATTTT-AAAACTATATAATATATATTTTT
* * *
109683 AAAAATGTTTTGAAAACTATATATTATATTAATTTT
1 AAAAATATTTT-AAAACTATATAATATA-TATTTTT
* *
109719 CAAAATATCTTAAAAACTATATAATATATA
1 AAAAATAT-TTTAAAACTATATAATATATA
109749 AATGTTTTGA
Statistics
Matches: 287, Mismatches: 42, Indels: 48
0.76 0.11 0.13
Matches are distributed among these distances:
29 6 0.02
30 7 0.02
31 4 0.01
32 2 0.01
33 1 0.00
34 27 0.09
35 72 0.25
36 51 0.18
37 68 0.24
38 21 0.07
39 17 0.06
40 11 0.04
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (34 bp):
AAAAATATTTTAAAACTATATAATATATATTTTT
Found at i:109499 original size:35 final size:35
Alignment explanation
Indices: 109450--109788 Score: 337
Period size: 35 Copynumber: 9.3 Consensus size: 35
109440 TGTTTTCAAA
*
109450 ATTATATAGTTTTCAAAAATGTTTTTAAAACTATAT
1 ATTATATA-TTTTCAAAAATGTTTTAAAAACTATAT
* * *
109486 ATTATATGTTTTCAAAAATGATTTCAAAACTATAT
1 ATTATATATTTTCAAAAATGTTTTAAAAACTATAT
109521 AATATATATATGTTTTC-AAAATGTTTTTTAAAAACTATAT
1 -AT-TATATA--TTTTCAAAAATG--TTTTAAAAACTATAT
*
109561 ATATATATATATTT--AAAATATTTTAAAAACTATAT
1 AT-TATATAT-TTTCAAAAATGTTTTAAAAACTATAT
109596 AATATATATATTTTCAAAAATGTTTTAAAAACTATAT
1 -AT-TATATATTTTCAAAAATGTTTTAAAAACTATAT
109633 ATTATATTAATTTTC-AAAATGTTTTTAAAAACTATAT
1 ATTATA-T-ATTTTCAAAAATG-TTTTAAAAACTATAT
* *
109670 AATATATATTTTCAAAAATGTTTTGAAAACTATAT
1 ATTATATATTTTCAAAAATGTTTTAAAAACTATAT
* *
109705 ATTATATTAATTTTC-AAAATATCTTAAAAACTATAT
1 ATTATA-T-ATTTTCAAAAATGTTTTAAAAACTATAT
* * * * *
109741 AATATATAAATGTTTTGAAACATGTTTTCAAAAGTATAT
1 -AT-TAT--ATATTTTCAAAAATGTTTTAAAAACTATAT
109780 ATTATATAT
1 ATTATATAT
109789 ACATTTTAAA
Statistics
Matches: 260, Mismatches: 22, Indels: 43
0.80 0.07 0.13
Matches are distributed among these distances:
35 75 0.29
36 54 0.21
37 68 0.26
38 18 0.07
39 31 0.12
40 14 0.05
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (35 bp):
ATTATATATTTTCAAAAATGTTTTAAAAACTATAT
Found at i:109579 original size:110 final size:109
Alignment explanation
Indices: 109465--109824 Score: 421
Period size: 110 Copynumber: 3.3 Consensus size: 109
109455 ATAGTTTTCA
* *
109465 AAAATGTTTTTAAAACTATATATTATATGTTTTCAAAAATGATTTCAAAACTATATAATATATAT
1 AAAATGTTTTTAAAACTATATATTATATATTTTCAAAAATGATTTAAAAACTATATAATATATAT
109530 ATGTTTTCAAAATGTTTTTTAAAAACTATATATATATATATATTT
66 ATGTTTTCAAAATG-TTTTTAAAAACTATATATATATATATATTT
* * * *
109575 AAAATATTTTAAAAACTATATAATATATATATTTTCAAAAATGTTTTAAAAACTATATATTATAT
1 AAAATGTTTTTAAAACTATAT-AT-TATATATTTTCAAAAATGATTTAAAAACTATATAATATAT
*
109640 -TA-ATTTTCAAAATGTTTTTAAAAACTATATA-ATATATAT-TTT
64 ATATGTTTTCAAAATGTTTTTAAAAACTATATATATATATATATTT
*
109682 CAAAAATGTTTTGAAAACTATATATTATATTAATTTTC-AAAAT-ATCTTAAAAACTATATAATA
1 --AAAATGTTTTTAAAACTATATATTATA-T-ATTTTCAAAAATGAT-TTAAAAACTATATAATA
* * * * *
109745 TATAAATGTTTTGAAACATG-TTTTCAAAAGTATATATTATATATACATTTT
61 TATATATGTTTTCAAA-ATGTTTTTAAAAACTATATA-TATATATATA-TTT
* **
109796 AAAATG-TTTTCAAACTGCATATTATATAT
1 AAAATGTTTTTAAAACTATATATTATATAT
109825 ATATATATAT
Statistics
Matches: 215, Mismatches: 21, Indels: 29
0.81 0.08 0.11
Matches are distributed among these distances:
107 8 0.04
108 35 0.16
109 45 0.21
110 52 0.24
111 23 0.11
112 49 0.23
114 3 0.01
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (109 bp):
AAAATGTTTTTAAAACTATATATTATATATTTTCAAAAATGATTTAAAAACTATATAATATATAT
ATGTTTTCAAAATGTTTTTAAAAACTATATATATATATATATTT
Found at i:109824 original size:36 final size:36
Alignment explanation
Indices: 109452--109828 Score: 321
Period size: 37 Copynumber: 10.2 Consensus size: 36
109442 TTTTCAAAAT
*
109452 TATATAGTTTTCAAAAATGTTTTTAAAACTATA-TAT-
1 TATATA-TTTTC-AAAATGTTTTAAAAACTATATTATA
* * *
109488 TATATGTTTTCAAAAATGATTTCAAAACTATATAATATA
1 TATATATTTTC-AAAATGTTTTAAAAACTATAT--TATA
*
109527 TATATGTTTTCAAAATGTTTTTTAAAAACTATA-TATA
1 TATATATTTTCAAAATG--TTTTAAAAACTATATTATA
* *
109564 TATATATATTT-AAAATATTTTAAAAACTATATAATA
1 TATATAT-TTTCAAAATGTTTTAAAAACTATATTATA
109600 TATATATTTTCAAAAATGTTTTAAAAACTATA-TAT-
1 TATATATTTTC-AAAATGTTTTAAAAACTATATTATA
109635 TATATTAATTTTCAAAATGTTTTTAAAAACTATA-TA-A
1 TATA-T-ATTTTCAAAATG-TTTTAAAAACTATATTATA
*
109672 TATATATTTTCAAAAATGTTTTGAAAACTATA-TAT-
1 TATATATTTTC-AAAATGTTTTAAAAACTATATTATA
* *
109707 TATATTAATTTTCAAAATATCTTAAAAACTATATAATATA
1 TATA-T-ATTTTCAAAATGTTTTAAAAACTATAT--TATA
* * *
109747 TAAATGTTTTGAAACATGTTTTCAAAAGTA-TATATTATA
1 TATATATTTTCAAA-ATGTTTT-AAAA--ACTATATTATA
* *
109786 TATACATTTT-AAAATGTTTT-CAAACTGCATATTATA
1 TATATATTTTCAAAATGTTTTAAAAACT--ATATTATA
109822 TATATAT
1 TATATAT
109829 ATATATATGT
Statistics
Matches: 288, Mismatches: 24, Indels: 58
0.78 0.06 0.16
Matches are distributed among these distances:
33 1 0.00
34 1 0.00
35 72 0.25
36 63 0.22
37 73 0.25
38 22 0.08
39 31 0.11
40 19 0.07
41 5 0.02
42 1 0.00
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (36 bp):
TATATATTTTCAAAATGTTTTAAAAACTATATTATA
Found at i:111197 original size:20 final size:20
Alignment explanation
Indices: 111172--111209 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
111162 ATATAGGATA
111172 AACTATGTA-TTTAGTTATTC
1 AACTAT-TACTTTAGTTATTC
111192 AACTATTACTTTAGTTAT
1 AACTATTACTTTAGTTAT
111210 GTTTTGATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.50
Consensus pattern (20 bp):
AACTATTACTTTAGTTATTC
Found at i:111516 original size:31 final size:31
Alignment explanation
Indices: 111481--111559 Score: 115
Period size: 31 Copynumber: 2.5 Consensus size: 31
111471 GTTTAATTAT
* *
111481 ATTTTTTAAAATT-TTGAAATGCTTAATGAGA
1 ATTTTTAAAAATTATAG-AATGCTTAATGAGA
*
111512 ATTTTTAAAAATTATAGGATGCTTAATGAGA
1 ATTTTTAAAAATTATAGAATGCTTAATGAGA
111543 ATTTTTAAAAATTATAG
1 ATTTTTAAAAATTATAG
111560 GATGAATTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
31 42 0.95
32 2 0.05
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.43
Consensus pattern (31 bp):
ATTTTTAAAAATTATAGAATGCTTAATGAGA
Found at i:111560 original size:31 final size:31
Alignment explanation
Indices: 111499--111563 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
111489 AAATTTTGAA
111499 ATGCTTAATGAGAATTTTTAAAAATTATAGG
1 ATGCTTAATGAGAATTTTTAAAAATTATAGG
111530 ATGCTTAATGAGAATTTTTAAAAATTATAGG
1 ATGCTTAATGAGAATTTTTAAAAATTATAGG
111561 ATG
1 ATG
111564 AATTTTGTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.42, C:0.03, G:0.17, T:0.38
Consensus pattern (31 bp):
ATGCTTAATGAGAATTTTTAAAAATTATAGG
Found at i:116819 original size:121 final size:118
Alignment explanation
Indices: 116602--116835 Score: 274
Period size: 121 Copynumber: 2.0 Consensus size: 118
116592 AATAGTAATT
* * * * * *
116602 TATATATATTTATAAATAAAATATTTATTTATTTAGAAATATCAGAAAAGGACTTCTAGGTGCCT
1 TATATATATTTATAAATAAAATATTTATTTATTTAAAAATATCAGAAAAAGACATCCAAGTACCT
* *
116667 TAAGACAGCTCTTTTCTTCGATATTAAAAATAAATAAATAATTAAAACAATTAA
66 TAAGACAGCTCCTTTCTTCAATATTAAAAATAAATAAAT-ATTAAAACAATTAA
** *
116721 TATATATAATTTATAAAATAGGATATTTATTTATTTAAAAATATCAGAAAATAGACATCCAATTA
1 TATATAT-ATTTAT-AAATAAAATATTTATTTATTTAAAAATATCAGAAAA-AGACATCCAAGTA
** * *
116786 TTTTAAGACTGC-CCTTTCTT-AATATTGACAAATAAATAAATATTAAAACA
63 CCTTAAGACAGCTCCTTTCTTCAATATT-AAAAATAAATAAATATTAAAACA
116836 GGATTAAAAT
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
119 7 0.07
120 20 0.21
121 53 0.55
122 16 0.17
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.37
Consensus pattern (118 bp):
TATATATATTTATAAATAAAATATTTATTTATTTAAAAATATCAGAAAAAGACATCCAAGTACCT
TAAGACAGCTCCTTTCTTCAATATTAAAAATAAATAAATATTAAAACAATTAA
Found at i:116932 original size:3 final size:3
Alignment explanation
Indices: 116924--116962 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
116914 TTTATGACTA
*
116924 AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
116963 TAAAAGTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:118758 original size:123 final size:122
Alignment explanation
Indices: 118623--119054 Score: 478
Period size: 123 Copynumber: 3.6 Consensus size: 122
118613 TTAAGGCAAG
* *
118623 GTTGAACAAATTCTTCTCATTATGAACTTCCTCTTCCTCTTCAGACGAGTTCTTCTCATTATGAA
1 GTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAA
* * *
118688 CTCTTTTTGGAAATGTTGATGTTGATCTATCTCTTTTAGTGATAGCGTCGAGCAAAAG
66 CTCTTTATGGAAATGTTGATGTTGATCTATCTCTTTTAGTGATAGAGTC-AGCAAAAA
* *
118746 GTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGCTCTTCTCATTATAAA
1 GTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAA
* * *
118811 CT-TCATATGGAAATGTTGGTGCTGATCTATCTCTTTCT-GTGATAGAGTCATGCAAAAAAAA
66 CTCT-TTATGGAAATGTTGATGTTGATCTATCTCTTT-TAGTGATAGAGTCA-GC---AAAAA
* * * *
118872 ATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTTAGATGAGTTCTTCTCATTATGAA
1 GTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAA
* * * * * *
118937 CACTTCTCTGGAAA-----A-GTTGATCCA--TC---GAGTGAT-GAATTCAAACAAAAA
66 CTCTT-TATGGAAATGTTGATGTTGATCTATCTCTTTTAGTGATAG-AGTC-AGCAAAAA
*
118985 GTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
1 GTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTCATTATGA
119050 ACTCT
65 ACTCT
119055 ACCTGGTAAT
Statistics
Matches: 266, Mismatches: 31, Indels: 33
0.81 0.09 0.10
Matches are distributed among these distances:
113 38 0.14
114 30 0.11
115 1 0.00
116 9 0.03
117 1 0.00
119 2 0.01
121 7 0.03
122 2 0.01
123 103 0.39
124 1 0.00
126 64 0.24
127 8 0.03
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (122 bp):
GTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAA
CTCTTTATGGAAATGTTGATGTTGATCTATCTCTTTTAGTGATAGAGTCAGCAAAAA
Found at i:118991 original size:113 final size:113
Alignment explanation
Indices: 118863--119238 Score: 526
Period size: 113 Copynumber: 3.3 Consensus size: 113
118853 TAGAGTCATG
* *
118863 CAAA-AAAAAATTGAACAAGTTCTTCTCATTATGAACTTCTTCTT-CTTCTTTAGATGAGTTCTT
1 CAAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTT
* *
118926 CTCATTATGAACACTTCTCTGGAAAAGTTGATCCATCGAGTGATGAATT
66 CTCATTATGAAC-CTTCTCTGGAAATGCTGATCCATCGAGTGATGAATT
* *
118975 CAAACAAAAAGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTT
1 CAAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTT
* * * *
119040 CTCATTATGAACTCTAC-CTGGTAATGCTGATCCATCAAATGATGAATT
66 CTCATTATGAAC-CTTCTCTGGAAATGCTGATCCATCGAGTGATGAATT
* * *
119088 CAAACAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAATTCTT
1 CAAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTT
* * * *
119153 CTCATTATGAACTTTCTCTGGCAATGCTAATCCATCGGGTGATGAATT
66 CTCATTATGAACCTTCTCTGGAAATGCTGATCCATCGAGTGATGAATT
* *
119201 -AAAGCAAAAGGTTGAAAAAGTTCTTCTCATTATGAACT
1 CAAA-CAAAAAGTTGAACAAGTTCTTCTCATTATGAACT
119239 CTAACTGGTA
Statistics
Matches: 236, Mismatches: 24, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
112 9 0.04
113 194 0.82
114 33 0.14
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (113 bp):
CAAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTT
CTCATTATGAACCTTCTCTGGAAATGCTGATCCATCGAGTGATGAATT
Found at i:119235 original size:73 final size:73
Alignment explanation
Indices: 119148--119312 Score: 226
Period size: 73 Copynumber: 2.3 Consensus size: 73
119138 TTCAGATAAA
** ***
119148 TTCTTCTCATTATGAACTTTCTCTGGCAATGCTAATCCATCGGGTGATGAATT-AAAGCAAAAGG
1 TTCTTCTCATTATGAACTTTAACTGGCAATGCTAATCCATCAAATGATGAATTCAAA-CAAAAGG
119212 TTGAAA-AAG
65 TT-AAACAAG
* * *
119221 TTCTTCTCATTATGAACTCTAACTGGTAATGCTGATCCATCAAATGATGAATTCAAACAAAAGGT
1 TTCTTCTCATTATGAACTTTAACTGGCAATGCTAATCCATCAAATGATGAATTCAAACAAAAGGT
119286 TAAACAAG
66 TAAACAAG
119294 TTCTTCTCATTATGAACTT
1 TTCTTCTCATTATGAACTT
119313 CTTCTTTATT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
72 3 0.04
73 75 0.93
74 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (73 bp):
TTCTTCTCATTATGAACTTTAACTGGCAATGCTAATCCATCAAATGATGAATTCAAACAAAAGGT
TAAACAAG
Found at i:119249 original size:186 final size:187
Alignment explanation
Indices: 119033--119425 Score: 716
Period size: 186 Copynumber: 2.1 Consensus size: 187
119023 TCTTCAGATG
*
119033 AGTTCTTCTCATTATGAACTCTACCTGGTAATGCTGATCCATCAAATGATGAATTCAAACAAAAG
1 AGTTCTTCTCATTATGAACTCTAACTGGTAATGCTGATCCATCAAATGATGAATTCAAACAAAAG
* *
119098 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAATTCTTCTCATTATGA
66 GTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATAAATTCTTCTCATTATGA
*
119163 AC-TTTCTCTGGCAATGCTAATCCATCGGGTGATGAATTAAAGCAAAAGGTTGAAAA
131 ACTTTTCTCTGGCAATGCTAATCCATCAGGTGATGAATTAAAGCAAAAGGTTGAAAA
119219 AGTTCTTCTCATTATGAACTCTAACTGGTAATGCTGATCCATCAAATGATGAATTCAAACAAAAG
1 AGTTCTTCTCATTATGAACTCTAACTGGTAATGCTGATCCATCAAATGATGAATTCAAACAAAAG
* *
119284 GTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTTATTCTTCAGATAAGTTCTTCTCATTATGA
66 GTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATAAATTCTTCTCATTATGA
*
119349 ACTTTTCTCTGGCAATGCTAATCCATCAGGTGATGAATTAAAGCAAAAGGTTGAACA
131 ACTTTTCTCTGGCAATGCTAATCCATCAGGTGATGAATTAAAGCAAAAGGTTGAAAA
119406 AGTTCTTCTCATTATGAACT
1 AGTTCTTCTCATTATGAACT
119426 TCTTCTTCCT
Statistics
Matches: 199, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
186 127 0.64
187 72 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (187 bp):
AGTTCTTCTCATTATGAACTCTAACTGGTAATGCTGATCCATCAAATGATGAATTCAAACAAAAG
GTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATAAATTCTTCTCATTATGA
ACTTTTCTCTGGCAATGCTAATCCATCAGGTGATGAATTAAAGCAAAAGGTTGAAAA
Found at i:119344 original size:113 final size:113
Alignment explanation
Indices: 119218--119924 Score: 990
Period size: 113 Copynumber: 6.3 Consensus size: 113
119208 AAGGTTGAAA
* * *
119218 AAGTTCTTCTCATTATGAACTCTAACTGGTAATGCTGATCCATCAAATGATGAATTCAAA-CAAA
1 AAGTTCTTCTCATTATGAACTCTATCTGGCAATGCTAATCCATCAAATGATGAATT-AAAGCAAA
* **
119282 AGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTTATTCTTCAGAT
65 AGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
* * **
119331 AAGTTCTTCTCATTATGAACTTTTCTCTGGCAATGCTAATCCATCAGGTGATGAATTAAAGCAAA
1 AAGTTCTTCTCATTATGAAC-TCTATCTGGCAATGCTAATCCATCAAATGATGAATTAAAGCAAA
*
119396 AGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCATAT
65 AGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
* * * * * *
119445 GAGTTCTTCTCATTATGAACTCTACCTGGTAATGTTGATCCATCAAATGATGAGTTCAAA-CAAA
1 AAGTTCTTCTCATTATGAACTCTATCTGGCAATGCTAATCCATCAAATGATGAATT-AAAGCAAA
*
119509 AGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
65 AGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
* * * ***
119558 AAGTTCTTCTCATTATGAACTTTCTCTGGCAATGTTAATCCATCGGGTGATGAATTAAAGCAAAA
1 AAGTTCTTCTCATTATGAACTCTATCTGGCAATGCTAATCCATCAAATGATGAATTAAAGCAAAA
*
119623 GGTTGAACAAGTTCTTCTCATTATGAACTTCTTATTCCTTCTTCAGAT
66 GGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
* * * * *
119671 GAGTTCTTCTCATTGTGAACTCTACCTGGTAATGCTGATCCATCAAATGATGAATTCAAA-CAAA
1 AAGTTCTTCTCATTATGAACTCTATCTGGCAATGCTAATCCATCAAATGATGAATT-AAAGCAAA
*
119735 AGGTTGAACAAGTTCTTCTCATTATGAACTTCTTATTCCTTCTTCAGAT
65 AGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
* * * ***
119784 AAGTTCTTCTCATTATGAACTTTCTCTGGCAATGTTAATCCATCGGGTGATGAATTAAAGCAAAA
1 AAGTTCTTCTCATTATGAACTCTATCTGGCAATGCTAATCCATCAAATGATGAATTAAAGCAAAA
* *
119849 GGTTGAACAAGTTATTCTCATTATGAACTTCTTCTTCCTTCTTTAGAT
66 GGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
*
119897 GAGTTCTTCTCATTATGAACTCT-TCTGG
1 AAGTTCTTCTCATTATGAACTCTATCTGG
119925 AAATATTGAA
Statistics
Matches: 526, Mismatches: 62, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
112 11 0.02
113 412 0.78
114 103 0.20
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (113 bp):
AAGTTCTTCTCATTATGAACTCTATCTGGCAATGCTAATCCATCAAATGATGAATTAAAGCAAAA
GGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
Found at i:119445 original size:24 final size:23
Alignment explanation
Indices: 119410--119454 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
119400 TGAACAAGTT
119410 CTTCTCATTATGAACTTCTTCTTC
1 CTTCTCATTATG-ACTTCTTCTTC
*
119434 CTTCTTCA-TATGAGTTCTTCT
1 CTTC-TCATTATGACTTCTTCT
119455 CATTATGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 8 0.42
25 3 0.16
ACGTcount: A:0.16, C:0.27, G:0.07, T:0.51
Consensus pattern (23 bp):
CTTCTCATTATGACTTCTTCTTC
Found at i:119461 original size:300 final size:300
Alignment explanation
Indices: 118919--119538 Score: 872
Period size: 300 Copynumber: 2.1 Consensus size: 300
118909 TCTTTAGATG
* ** * * *
118919 AGTTCTTCTCATTATGAACACTTCTCTGGAAAAGTTGATCCATCGAGTGATGAATTCAAACAAAA
1 AGTTCTTCTCATTATGAACTCTTAACTGGAAAAGCTGATCCATCAAATGATGAATTCAAACAAAA
* * * *
118984 AGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATG
66 AGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATAAGTTCTTCTCATTATG
* *
119049 AACTCTACCTGGTAATGCTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAGTTCTTC
131 AACTCTACCTGGCAATGCTAATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAGTTCTTC
*
119114 TCATTATGAACTTCTTCTTCCTTCTTCAGATAAATTCTTCTCATTATGAACT-TTCTCTGGCAAT
196 TCATTATGAACTTCTTCTTCCTTCTTCAGATAAATTCTTCTCATTATGAACTCTAC-CTGGCAAT
***
119178 GCTAATCCATCGGGTGATGAATT-AAAGCAAAAGGTTGAAA-A
260 GCTAATCCATCAAATGATGAATTCAAA-CAAAAGGTT-AAACA
* *
119219 AGTTCTTCTCATTATGAACTC-TAACTGGTAATGCTGATCCATCAAATGATGAATTCAAACAAAA
1 AGTTCTTCTCATTATGAACTCTTAACTGGAAAAGCTGATCCATCAAATGATGAATTCAAACAAAA
* * *
119283 GGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTTATTCTTCAGATAAGTTCTTCTCATTATG
66 AGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATAAGTTCTTCTCATTATG
* * **
119348 AACTTTTCTCTGGCAATGCTAATCCATCAGGTGATGAATT-AAAGCAAAAGGTTGAACAAGTTCT
131 AACTCTAC-CTGGCAATGCTAATCCATCAAATGATGAATTCAAA-CAAAAGGTTGAACAAGTTCT
* * * *
119412 TCTCATTATGAACTTCTTCTTCCTTCTTCATATGAGTTCTTCTCATTATGAACTCTACCTGGTAA
194 TCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAATTCTTCTCATTATGAACTCTACCTGGCAA
* * *
119477 TGTTGATCCATCAAATGATGAGTTCAAACAAAAGGTTAAACA
259 TGCTAATCCATCAAATGATGAATTCAAACAAAAGGTTAAACA
119519 AGTTCTTCTCATTATGAACT
1 AGTTCTTCTCATTATGAACT
119539 TCTTCTTCCT
Statistics
Matches: 283, Mismatches: 32, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
299 106 0.37
300 172 0.61
301 5 0.02
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (300 bp):
AGTTCTTCTCATTATGAACTCTTAACTGGAAAAGCTGATCCATCAAATGATGAATTCAAACAAAA
AGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATAAGTTCTTCTCATTATG
AACTCTACCTGGCAATGCTAATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAGTTCTTC
TCATTATGAACTTCTTCTTCCTTCTTCAGATAAATTCTTCTCATTATGAACTCTACCTGGCAATG
CTAATCCATCAAATGATGAATTCAAACAAAAGGTTAAACA
Found at i:119695 original size:226 final size:226
Alignment explanation
Indices: 119219--119919 Score: 1267
Period size: 226 Copynumber: 3.1 Consensus size: 226
119209 AGGTTGAAAA
*
119219 AGTTCTTCTCATTATGAACTCTAACTGGTAATGCTGATCCATCAAATGATGAATTCAAACAAAAG
1 AGTTCTTCTCATTATGAACTCTACCTGGTAATGCTGATCCATCAAATGATGAATTCAAACAAAAG
**
119284 GTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTTATTCTTCAGATAAGTTCTTCTCATTATGA
66 GTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGA
* *
119349 ACTTTTCTCTGGCAATGCTAATCCATCAGGTGATGAATTAAAGCAAAAGGTTGAACAAGTTCTTC
131 AC-TTTCTCTGGCAATGTTAATCCATCGGGTGATGAATTAAAGCAAAAGGTTGAACAAGTTCTTC
*
119414 TCATTATGAACTTCTTCTTCCTTCTTCATATG
195 TCATTATGAACTTCTTCTTCCTTCTTCAGATG
* *
119446 AGTTCTTCTCATTATGAACTCTACCTGGTAATGTTGATCCATCAAATGATGAGTTCAAACAAAAG
1 AGTTCTTCTCATTATGAACTCTACCTGGTAATGCTGATCCATCAAATGATGAATTCAAACAAAAG
119511 GTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGA
66 GTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGA
119576 ACTTTCTCTGGCAATGTTAATCCATCGGGTGATGAATTAAAGCAAAAGGTTGAACAAGTTCTTCT
131 ACTTTCTCTGGCAATGTTAATCCATCGGGTGATGAATTAAAGCAAAAGGTTGAACAAGTTCTTCT
*
119641 CATTATGAACTTCTTATTCCTTCTTCAGATG
196 CATTATGAACTTCTTCTTCCTTCTTCAGATG
*
119672 AGTTCTTCTCATTGTGAACTCTACCTGGTAATGCTGATCCATCAAATGATGAATTCAAACAAAAG
1 AGTTCTTCTCATTATGAACTCTACCTGGTAATGCTGATCCATCAAATGATGAATTCAAACAAAAG
* *
119737 GTTGAACAAGTTCTTCTCATTATGAACTTCTTATTCCTTCTTCAGATAAGTTCTTCTCATTATGA
66 GTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGA
*
119802 ACTTTCTCTGGCAATGTTAATCCATCGGGTGATGAATTAAAGCAAAAGGTTGAACAAGTTATTCT
131 ACTTTCTCTGGCAATGTTAATCCATCGGGTGATGAATTAAAGCAAAAGGTTGAACAAGTTCTTCT
*
119867 CATTATGAACTTCTTCTTCCTTCTTTAGATG
196 CATTATGAACTTCTTCTTCCTTCTTCAGATG
119898 AGTTCTTCTCATTATGAACTCT
1 AGTTCTTCTCATTATGAACTCT
119920 TCTGGAAATA
Statistics
Matches: 456, Mismatches: 18, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
226 329 0.72
227 127 0.28
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (226 bp):
AGTTCTTCTCATTATGAACTCTACCTGGTAATGCTGATCCATCAAATGATGAATTCAAACAAAAG
GTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGA
ACTTTCTCTGGCAATGTTAATCCATCGGGTGATGAATTAAAGCAAAAGGTTGAACAAGTTCTTCT
CATTATGAACTTCTTCTTCCTTCTTCAGATG
Found at i:120215 original size:73 final size:73
Alignment explanation
Indices: 119978--120294 Score: 458
Period size: 73 Copynumber: 4.3 Consensus size: 73
119968 GAGGTCTTAT
* *
119978 CATCTTGCACTGTAGGGCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTT
1 CATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTT
120043 TTTGA-AA
66 TTTGAGAA
* * * *
120050 GCATCATGCATTGTAGGTCTTACAGATAACCCTGAGGCTTTAAGATC-AAATGCTCCTGAAGGCT
1 -CATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCT
120114 TTTTGAGAA
65 TTTTGAGAA
* *
120123 CATCATGCACTGTAGGTCTTACAGATGGCCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAAGCTT
1 CATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTT
120188 TTTGAGAA
66 TTTGAGAA
* *
120196 CATCATGCACTGTAGGTCTTACAGATGACCCTGAGGGTTTTGAAAACATCAAAAAGCTCCCGAAG
1 CATCATGCACTGTAGGTCTTACAGATGACCCTGA-GGCTTT---AAGATCAAAAAGCTCCCGAAG
*
120261 GCTTTTTGAAAA
62 GCTTTTTGAGAA
* *
120273 CATCCTGCACTGTAGGGCTTAC
1 CATCATGCACTGTAGGTCTTAC
120295 GAATGTTGGA
Statistics
Matches: 219, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
72 64 0.29
73 100 0.46
74 5 0.02
77 50 0.23
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (73 bp):
CATCATGCACTGTAGGTCTTACAGATGACCCTGAGGCTTTAAGATCAAAAAGCTCCCGAAGGCTT
TTTGAGAA
Found at i:120981 original size:22 final size:22
Alignment explanation
Indices: 120926--120983 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
120916 AATAAAGCCT
* *
120926 TCATCTTTGAAAAGGGAATCTA
1 TCATCTTTGAAGAGAGAATCTA
120948 TCATCTTTGAAGAGAGAATCTA
1 TCATCTTTGAAGAGAGAATCTA
120970 TCATCTTTGAAGAG
1 TCATCTTTGAAGAG
120984 TGTAGATGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (22 bp):
TCATCTTTGAAGAGAGAATCTA
Found at i:130390 original size:27 final size:29
Alignment explanation
Indices: 130355--130408 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
130345 ATTTCAAAAT
130355 TATAATTAT-AA-AAAATATTAATTTATA
1 TATAATTATAAATAAAATATTAATTTATA
* *
130382 TATATTTATAAATAAAATATTTATTTA
1 TATAATTATAAATAAAATATTAATTTA
130409 GAAACATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 8 0.35
28 2 0.09
29 13 0.57
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
TATAATTATAAATAAAATATTAATTTATA
Found at i:133060 original size:13 final size:13
Alignment explanation
Indices: 133042--133094 Score: 56
Period size: 13 Copynumber: 4.1 Consensus size: 13
133032 ATAAATAGTT
133042 ATTAAATAAATTA
1 ATTAAATAAATTA
133055 ATTAAAATAATATT-
1 ATT-AAATAA-ATTA
*
133069 ATTAAA-AAATTC
1 ATTAAATAAATTA
*
133081 ATTACATAAATTA
1 ATTAAATAAATTA
133094 A
1 A
133095 CATATGAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
11 3 0.09
12 7 0.21
13 12 0.35
14 9 0.26
15 3 0.09
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (13 bp):
ATTAAATAAATTA
Found at i:133064 original size:14 final size:14
Alignment explanation
Indices: 133035--133075 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
133025 GAGATGAATA
133035 AATAGTTATT-AAAT
1 AATA-TTATTAAAAT
133049 AA-ATTAATTAAAAT
1 AATATT-ATTAAAAT
133063 AATATTATTAAAA
1 AATATTATTAAAA
133076 AATTCATTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
12 2 0.08
13 4 0.17
14 15 0.62
15 3 0.12
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (14 bp):
AATATTATTAAAAT
Found at i:137903 original size:29 final size:29
Alignment explanation
Indices: 137870--137928 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
137860 ATTACCTATA
137870 TAATTATTCAATAACTTAAAA-TATT-TTTT
1 TAATTATT-AA-AACTTAAAATTATTATTTT
*
137899 TAATTATTAAAATTTAAAATTATTATTTT
1 TAATTATTAAAACTTAAAATTATTATTTT
137928 T
1 T
137929 TAAAAAATGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 8 0.30
28 6 0.22
29 13 0.48
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.54
Consensus pattern (29 bp):
TAATTATTAAAACTTAAAATTATTATTTT
Found at i:139476 original size:20 final size:20
Alignment explanation
Indices: 139453--139519 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 20
139443 GAATATGTAA
139453 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
139473 ATCGCAA--CG---C-GA-T
1 ATCGCAACGCGATTCTGACT
*
139486 ATCGCAACGCGATGCTGACT
1 ATCGCAACGCGATTCTGACT
*
139506 ATCGCAATGCGATT
1 ATCGCAACGCGATT
139520 TTCAAAGCGC
Statistics
Matches: 38, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
13 8 0.21
14 2 0.05
15 3 0.08
18 3 0.08
19 2 0.05
20 20 0.53
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:139490 original size:13 final size:13
Alignment explanation
Indices: 139472--139498 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
139462 CGATTCTGAC
139472 TATCGCAACGCGA
1 TATCGCAACGCGA
139485 TATCGCAACGCGA
1 TATCGCAACGCGA
139498 T
1 T
139499 GCTGACTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.19
Consensus pattern (13 bp):
TATCGCAACGCGA
Found at i:139495 original size:33 final size:33
Alignment explanation
Indices: 139453--139518 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
139443 GAATATGTAA
*
139453 ATCGCAACGCGATTCTGACTATCGCAACGCGAT
1 ATCGCAACGCGATGCTGACTATCGCAACGCGAT
*
139486 ATCGCAACGCGATGCTGACTATCGCAATGCGAT
1 ATCGCAACGCGATGCTGACTATCGCAACGCGAT
139519 TTTCAAAGCG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (33 bp):
ATCGCAACGCGATGCTGACTATCGCAACGCGAT
Found at i:139720 original size:22 final size:22
Alignment explanation
Indices: 139695--139737 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
139685 GGTAACATCC
*
139695 GTCCCTATCTCCGATGAAATCA
1 GTCCCCATCTCCGATGAAATCA
*
139717 GTCCCCATCTCCGGTGAAATC
1 GTCCCCATCTCCGATGAAATC
139738 CATCTATCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.35, G:0.16, T:0.26
Consensus pattern (22 bp):
GTCCCCATCTCCGATGAAATCA
Found at i:140146 original size:19 final size:19
Alignment explanation
Indices: 140118--140168 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
140108 AATGACAGAA
*
140118 TCGCAATGCGATTTT-AGTT
1 TCGCATTGCGATTTTCA-TT
140137 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
140156 TCGCGTTGCGATT
1 TCGCATTGCGATT
140169 ATCACGTTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 28 0.97
20 1 0.03
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:140217 original size:20 final size:20
Alignment explanation
Indices: 140174--140241 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
140164 CGATTATCAC
** *
140174 GTTGCGATAGTCAAATTCGC
1 GTTGCGATAGTCATTTTCGT
*
140194 GTTGCGATAGTCATTTTTGT
1 GTTGCGATAGTCATTTTCGT
**
140214 GTTGCGATTTTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
140234 GTTGCGAT
1 GTTGCGAT
140242 TTTAAGTTTC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.16, C:0.15, G:0.25, T:0.44
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:140251 original size:20 final size:20
Alignment explanation
Indices: 140212--140251 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
140202 AGTCATTTTT
* *
140212 GTGTTGCGATTTTCATTTTC
1 GTGTTGCGATTTTAAGTTTC
140232 GTGTTGCGATTTTAAGTTTC
1 GTGTTGCGATTTTAAGTTTC
140252 AGAAACTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.12, G:0.23, T:0.53
Consensus pattern (20 bp):
GTGTTGCGATTTTAAGTTTC
Found at i:141981 original size:18 final size:18
Alignment explanation
Indices: 141957--142006 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
141947 TTTACTCGTA
141957 ATTTCACTTAGATTAACC
1 ATTTCACTTAGATTAACC
*
141975 GTTTCACTTAGATTAACC
1 ATTTCACTTAGATTAACC
141993 ATTTCACTTAGATT
1 ATTTCACTTAGATT
142007 GCTTAGTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (18 bp):
ATTTCACTTAGATTAACC
Found at i:142179 original size:20 final size:20
Alignment explanation
Indices: 142154--142219 Score: 123
Period size: 20 Copynumber: 3.3 Consensus size: 20
142144 TAGTTTACTT
*
142154 TCGCAACGCGGAAATGACTA
1 TCGCAACACGGAAATGACTA
142174 TCGCAACACGGAAATGACTA
1 TCGCAACACGGAAATGACTA
142194 TCGCAACACGGAAATGACTA
1 TCGCAACACGGAAATGACTA
142214 TCGCAA
1 TCGCAA
142220 TGAAAGAATC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.15
Consensus pattern (20 bp):
TCGCAACACGGAAATGACTA
Found at i:142289 original size:20 final size:20
Alignment explanation
Indices: 142264--142350 Score: 115
Period size: 20 Copynumber: 4.5 Consensus size: 20
142254 GCGATTATCT
*
142264 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATATTCG
* *
142284 CGTTGCGATAGTCATTTTCA
1 CGTTGCGATAGTCATATTCG
*
142304 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATATTCG
142324 CGTTGCGATAGTC--ATTCG
1 CGTTGCGATAGTCATATTCG
*
142342 TGTTGCGAT
1 CGTTGCGAT
142351 TTTAAGTTTC
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
18 12 0.20
20 49 0.80
ACGTcount: A:0.18, C:0.20, G:0.25, T:0.37
Consensus pattern (20 bp):
CGTTGCGATAGTCATATTCG
Found at i:142324 original size:40 final size:40
Alignment explanation
Indices: 142264--142339 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
142254 GCGATTATCT
142264 CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCATTTTCA
1 CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCATTTTCA
**
142304 CGTTGCGATAGTCATTTTCGCGTTGCGATAGTCATT
1 CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCATT
142340 CGTGTTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.37
Consensus pattern (40 bp):
CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCATTTTCA
Found at i:142937 original size:21 final size:21
Alignment explanation
Indices: 142846--142950 Score: 86
Period size: 21 Copynumber: 5.0 Consensus size: 21
142836 GACTCACCTG
* *
142846 TCATCGTTCAAGAGACCTCCCC
1 TCATCGTTCAAGAGGCC-CCTC
*
142868 T-ATCGTTCAAGAGGCCCCTA
1 TCATCGTTCAAGAGGCCCCTC
** *
142888 TCATCCCTCAAGAGTCCCCTC
1 TCATCGTTCAAGAGGCCCCTC
* * * *
142909 CCACCGTTCAAGAGGCCACTG
1 TCATCGTTCAAGAGGCCCCTC
* *
142930 TCATCGTTGAAGAGGTCCCTC
1 TCATCGTTCAAGAGGCCCCTC
142951 CCAACATTCT
Statistics
Matches: 62, Mismatches: 20, Indels: 3
0.73 0.24 0.04
Matches are distributed among these distances:
20 3 0.05
21 58 0.94
22 1 0.02
ACGTcount: A:0.22, C:0.37, G:0.18, T:0.23
Consensus pattern (21 bp):
TCATCGTTCAAGAGGCCCCTC
Found at i:142943 original size:42 final size:42
Alignment explanation
Indices: 142843--142953 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 42
142833 CCCGACTCAC
* * * *
142843 CTGTCATCGTTCAAGAGACCTCC-CCTATCGTTCAAGAGGCCC
1 CTGTCATCGTTCAAGAGTCC-CCTCCCACCGTTCAAGAGGCCA
* **
142885 CTATCATCCCTCAAGAGTCCCCTCCCACCGTTCAAGAGGCCA
1 CTGTCATCGTTCAAGAGTCCCCTCCCACCGTTCAAGAGGCCA
*
142927 CTGTCATCGTTGAAGAGGT-CCCTCCCA
1 CTGTCATCGTTCAAGA-GTCCCCTCCCA
142954 ACATTCTAGA
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
41 2 0.04
42 52 0.93
43 2 0.04
ACGTcount: A:0.22, C:0.38, G:0.18, T:0.23
Consensus pattern (42 bp):
CTGTCATCGTTCAAGAGTCCCCTCCCACCGTTCAAGAGGCCA
Found at i:144366 original size:14 final size:14
Alignment explanation
Indices: 144329--144390 Score: 61
Period size: 14 Copynumber: 4.3 Consensus size: 14
144319 TTGCTTGTTT
*
144329 AATTGATTTATAAA
1 AATTGATTTGTAAA
144343 AATTGATTTGTAAA
1 AATTGATTTGTAAA
* *
144357 AGTTGATTTGTTTAA
1 AATTGATTTG-TAAA
* *
144372 TATTGATGTGTAAA
1 AATTGATTTGTAAA
144386 TAATT
1 -AATT
144391 CTTATTTGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
14 25 0.66
15 13 0.34
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.47
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:144622 original size:20 final size:20
Alignment explanation
Indices: 144597--144755 Score: 150
Period size: 20 Copynumber: 8.2 Consensus size: 20
144587 GCGATTTTTT
* *
144597 CGTTGCGATAGTCAAATACC
1 CGTTGCGATAGTCAAATTCA
*
144617 CGTTGCGATAATCAAATTCA
1 CGTTGCGATAGTCAAATTCA
*
144637 TGTTGCGATAGTCAAATTCA
1 CGTTGCGATAGTCAAATTCA
*
144657 CGTTGCGAT--T----TTCT
1 CGTTGCGATAGTCAAATTCA
* * *
144671 CATTGCGATAGTCAAATACC
1 CGTTGCGATAGTCAAATTCA
* *
144691 CGTTGCGATAATCAAATTCG
1 CGTTGCGATAGTCAAATTCA
* *
144711 CGTTGTGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCA
* *
144731 CGTTGCGATAGACAAATTCG
1 CGTTGCGATAGTCAAATTCA
144751 CGTTG
1 CGTTG
144756 TGATTTTTGC
Statistics
Matches: 115, Mismatches: 18, Indels: 12
0.79 0.12 0.08
Matches are distributed among these distances:
14 11 0.10
16 1 0.01
18 1 0.01
20 102 0.89
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (20 bp):
CGTTGCGATAGTCAAATTCA
Found at i:144647 original size:74 final size:74
Alignment explanation
Indices: 144557--144739 Score: 285
Period size: 74 Copynumber: 2.5 Consensus size: 74
144547 TGCGAAAGTC
* * * * *
144557 AATTCACGTTGCGATAGTCTAATACGCTTTGCGATTTTTTCGTTGCGATAGTCAAATACCCGTTG
1 AATTCACGTTGCGATAGTCAAATTCGCGTTGCGATTTTCTCATTGCGATAGTCAAATACCCGTTG
144622 CGATAATCA
66 CGATAATCA
* *
144631 AATTCATGTTGCGATAGTCAAATTCACGTTGCGATTTTCTCATTGCGATAGTCAAATACCCGTTG
1 AATTCACGTTGCGATAGTCAAATTCGCGTTGCGATTTTCTCATTGCGATAGTCAAATACCCGTTG
144696 CGATAATCA
66 CGATAATCA
* *
144705 AATTCGCGTTGTGATAGTCAAATTCGCGTTGCGAT
1 AATTCACGTTGCGATAGTCAAATTCGCGTTGCGAT
144740 AGACAAATTC
Statistics
Matches: 98, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
74 98 1.00
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (74 bp):
AATTCACGTTGCGATAGTCAAATTCGCGTTGCGATTTTCTCATTGCGATAGTCAAATACCCGTTG
CGATAATCA
Found at i:144682 original size:34 final size:34
Alignment explanation
Indices: 144565--144699 Score: 135
Period size: 34 Copynumber: 3.8 Consensus size: 34
144555 TCAATTCACG
* * * * *
144565 TTGCGATAGTCTAATACGCTTTGCGATTTTTTCG
1 TTGCGATAGTCAAATACCCGTTGCGATTTTCTCA
**
144599 TTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCA
1 TTGCGATAGTCAAATACCCGTTGCGATTTTC----TCA
* *
144637 TGTTGCGATAGTCAAATTCACGTTGCGATTTTCTCA
1 --TTGCGATAGTCAAATACCCGTTGCGATTTTCTCA
144673 TTGCGATAGTCAAATACCCGTTGCGAT
1 TTGCGATAGTCAAATACCCGTTGCGAT
144700 AATCAAATTC
Statistics
Matches: 82, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
34 50 0.61
36 3 0.04
38 2 0.02
40 27 0.33
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (34 bp):
TTGCGATAGTCAAATACCCGTTGCGATTTTCTCA
Found at i:144759 original size:40 final size:40
Alignment explanation
Indices: 144597--144755 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
144587 GCGATTTTTT
*
144597 CGTTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCA
1 CGTTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCG
* * * *
144637 TGTTGCGATAGTCAAATTCACGTTGCGAT--T----TTCT
1 CGTTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCG
*
144671 CATTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCG
1 CGTTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCG
* * *
144711 CGTTGTGATAGTCAAATTCGCGTTGCGATAGA-CAAATTCG
1 CGTTGCGATAGTCAAATACCCGTTGCGATA-ATCAAATTCG
144751 CGTTG
1 CGTTG
144756 TGATTTTTGC
Statistics
Matches: 99, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
34 28 0.28
36 1 0.01
38 1 0.01
40 68 0.69
41 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (40 bp):
CGTTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCG
Found at i:144793 original size:94 final size:94
Alignment explanation
Indices: 144597--144781 Score: 255
Period size: 94 Copynumber: 2.0 Consensus size: 94
144587 GCGATTTTTT
* * *
144597 CGTTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCATGTTGCGATAGTCAAATTCACGTTG
1 CGTTGCGATAATCAAATACCCGTTGCGATAATCAAATTCACGTTGCGATAGACAAATTCACGTTG
144662 CGATTTTCTCATTGCGATAGTCAAATACC
66 CGATTTTCTCATTGCGATAGTCAAATACC
* * * * * *
144691 CGTTGCGATAATCAAATTCGCGTTGTGATAGTCAAATTCGCGTTGCGATAGACAAATTCGCGTTG
1 CGTTGCGATAATCAAATACCCGTTGCGATAATCAAATTCACGTTGCGATAGACAAATTCACGTTG
* *
144756 TGATTTT-TGCGTTGCGATAGTCAAAT
66 CGATTTTCT-CATTGCGATAGTCAAAT
144782 TAGTGTTGCG
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
93 1 0.01
94 78 0.99
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (94 bp):
CGTTGCGATAATCAAATACCCGTTGCGATAATCAAATTCACGTTGCGATAGACAAATTCACGTTG
CGATTTTCTCATTGCGATAGTCAAATACC
Found at i:144816 original size:34 final size:34
Alignment explanation
Indices: 144732--144827 Score: 113
Period size: 34 Copynumber: 2.8 Consensus size: 34
144722 TCAAATTCGC
* * * *
144732 GTTGCGATAGA-CAAATTCGCGTTGTGATTTTTGC
1 GTTGCGATA-ATCAAATTAGTGTTGCGATTTTTGA
*
144766 GTTGCGATAGTCAAATTAGTGTTGCGATTTTTGA
1 GTTGCGATAATCAAATTAGTGTTGCGATTTTTGA
* *
144800 GTTGCGATAATTAAATTCGTGTTGCGAT
1 GTTGCGATAATCAAATTAGTGTTGCGAT
144828 AGTCAAATTC
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
34 53 1.00
ACGTcount: A:0.23, C:0.11, G:0.26, T:0.40
Consensus pattern (34 bp):
GTTGCGATAATCAAATTAGTGTTGCGATTTTTGA
Found at i:144825 original size:20 final size:20
Alignment explanation
Indices: 144800--144855 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
144790 CGATTTTTGA
* *
144800 GTTGCGATAATTAAATTCGT
1 GTTGCGATAATCAAATTCGC
*
144820 GTTGCGATAGTCAAATTCGC
1 GTTGCGATAATCAAATTCGC
*
144840 GTTGCGATATTCAAAT
1 GTTGCGATAATCAAAT
144856 GAATGTGTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (20 bp):
GTTGCGATAATCAAATTCGC
Found at i:145078 original size:140 final size:140
Alignment explanation
Indices: 144826--145095 Score: 531
Period size: 140 Copynumber: 1.9 Consensus size: 140
144816 TCGTGTTGCG
*
144826 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACATATCA
1 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
144891 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
66 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
144956 AATACACATA
131 AATACACATA
144966 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
1 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
145031 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
66 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
145096 TACAAAGTTT
Statistics
Matches: 129, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
140 129 1.00
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.29
Consensus pattern (140 bp):
ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
AATACACATA
Found at i:147241 original size:14 final size:14
Alignment explanation
Indices: 147222--147258 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
147212 TCCCGTGGCA
147222 TTTTCTTCGGGGAC
1 TTTTCTTCGGGGAC
*
147236 TTTTCTTCGGGGAT
1 TTTTCTTCGGGGAC
147250 TTCTTCTTC
1 TT-TTCTTC
147259 TTCTTCTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.05, C:0.22, G:0.22, T:0.51
Consensus pattern (14 bp):
TTTTCTTCGGGGAC
Found at i:147485 original size:24 final size:24
Alignment explanation
Indices: 147451--147504 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
147441 CTGAAACATC
*
147451 ATCAAAATCCGAGTATTTACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
147475 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
147499 ATCAAA
1 ATCAAA
147505 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:148350 original size:20 final size:20
Alignment explanation
Indices: 148325--148475 Score: 162
Period size: 20 Copynumber: 7.5 Consensus size: 20
148315 AAATTCAGTG
*
148325 TTGCGACAGTCAGAATCGCA
1 TTGCGATAGTCAGAATCGCA
**
148345 TTGCGATAGTCAGAATCGTG
1 TTGCGATAGTCAGAATCGCA
*
148365 TTGCGATAGTCAGAATCACA
1 TTGCGATAGTCAGAATCGCA
*
148385 TTGCGATAGTCATAATCGCA
1 TTGCGATAGTCAGAATCGCA
*
148405 TTGCGATAGTCATAATCGCA
1 TTGCGATAGTCAGAATCGCA
* * *
148425 TTGCGAT-TTACATATTCGCA
1 TTGCGATAGT-CAGAATCGCA
* * *
148445 TTGCGAT-TTACATATTCGCA
1 TTGCGATAGT-CAGAATCGCA
148465 TTGCGATAGTC
1 TTGCGATAGTC
148476 GGAAAATCGC
Statistics
Matches: 118, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
19 1 0.01
20 116 0.98
21 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCGCA
Found at i:148502 original size:21 final size:21
Alignment explanation
Indices: 148476--148534 Score: 109
Period size: 21 Copynumber: 2.8 Consensus size: 21
148466 TGCGATAGTC
148476 GGAAAATCGCAACGCGAATTT
1 GGAAAATCGCAACGCGAATTT
148497 GGAAAATCGCAACGCGAATTT
1 GGAAAATCGCAACGCGAATTT
*
148518 GGAAAATCGCAATGCGA
1 GGAAAATCGCAACGCGA
148535 TAGTCAATTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
GGAAAATCGCAACGCGAATTT
Found at i:151005 original size:72 final size:71
Alignment explanation
Indices: 150872--151018 Score: 183
Period size: 72 Copynumber: 2.0 Consensus size: 71
150862 TGTCACCTTG
150872 GAGATTTTTTCTCTAAACAAAGTTTCGACTCGCTAGAGACAATTTTTCTTAAAAATAAATTTTGT
1 GAGATTTTTTCTCTAAACAAAGTTTCGACTCGCTAGAGACAA-TTTTCTTAAAAATAAATTTTGT
150937 CTCACTT
65 CTCACTT
* * * * *
150944 GAGATTGTTTTCTCTAAAAACAAA-TTTTGTCTCGCTTGAGACAA-TTTCTATCAAAA-CAATTT
1 GAGATT-TTTTCTCT--AAACAAAGTTTCGACTCGCTAGAGACAATTTTCT-TAAAAATAAATTT
151006 TGTCTCACTT
62 TGTCTCACTT
151016 GAG
1 GAG
151019 GCGGTATTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
72 29 0.44
73 13 0.20
74 17 0.26
75 7 0.11
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.39
Consensus pattern (71 bp):
GAGATTTTTTCTCTAAACAAAGTTTCGACTCGCTAGAGACAATTTTCTTAAAAATAAATTTTGTC
TCACTT
Found at i:151017 original size:35 final size:37
Alignment explanation
Indices: 150916--151018 Score: 122
Period size: 37 Copynumber: 2.9 Consensus size: 37
150906 AGAGACAATT
* ***
150916 TTTCT-TAAAAATAAATTTTGTCTCACTTGAGATTGT
1 TTTCTATAAAAACAAATTTTGTCTCACTTGAGATCAA
* *
150952 TTTCTCTAAAAACAAATTTTGTCTCGCTTGAGA-CAA
1 TTTCTATAAAAACAAATTTTGTCTCACTTGAGATCAA
*
150988 TTTCTATCAAAAC-AATTTTGTCTCACTTGAG
1 TTTCTATAAAAACAAATTTTGTCTCACTTGAG
151019 GCGGTATTCC
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
35 17 0.29
36 16 0.28
37 25 0.43
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.42
Consensus pattern (37 bp):
TTTCTATAAAAACAAATTTTGTCTCACTTGAGATCAA
Found at i:151440 original size:36 final size:34
Alignment explanation
Indices: 151358--151441 Score: 87
Period size: 35 Copynumber: 2.4 Consensus size: 34
151348 AATACTGTTT
* * **
151358 TTTCCTCAAAACAAATTTCATCTCTTTGAGATTG
1 TTTCCTCGAAACAAATTTCATCTCTTTAAGACAG
* *
151392 TTTCCCTTGAAACAAATTTTATCTCTCTTAAGACAG
1 TTT-CCTCGAAACAAATTTCATCTCT-TTAAGACAG
151428 TTTCTCTCGAAACA
1 TTTC-CTCGAAACA
151442 TAAAAACCTT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
34 3 0.08
35 20 0.50
36 17 0.43
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (34 bp):
TTTCCTCGAAACAAATTTCATCTCTTTAAGACAG
Found at i:151573 original size:68 final size:67
Alignment explanation
Indices: 151383--151714 Score: 459
Period size: 68 Copynumber: 4.9 Consensus size: 67
151373 TTTCATCTCT
* * *
151383 TTGAGATTGTTTCCCTTGAAACAAATTTTATCTCTCTTAAGACAGTTTCTCTCGAAACATAAAAA
1 TTGAGATTGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACA-AAAAA
* *
151448 CCT
65 ACA
* *
151451 TTGAGATTGTTTCTCTTGAAATAAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAAA
1 TTGAGATTGTTTCCCTTGAAA-CAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACA-AAAA
151516 AACA
64 AACA
* * *
151520 TTGAGATTGTTTCCCTTGATACAAATTTTGTCTCGCTTGAGACAGTCTCTCTTGAAACAAAAAAA
1 TTGAGATTGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAAAAA
151585 CA
66 CA
* *
151587 TTGAGATTGTTTCCCTTAAAACAAAGTCTTGTCTCTCTTGAGACAGTTTCTCTTGAAAC-AAAAA
1 TTGAGATTGTTTCCCTTGAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAAAA
* *
151651 TCT
65 ACA
* ** *
151654 TTGAGATTATTTCCCTCAAAACAAATTTTGTCTCTCTTGAGATAGTTTCTCTTGAAACAAA
1 TTGAGATTGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAA
151715 TTATCCCTAA
Statistics
Matches: 238, Mismatches: 23, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
66 31 0.13
67 62 0.26
68 85 0.36
69 60 0.25
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (67 bp):
TTGAGATTGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAAAAA
CA
Found at i:152048 original size:123 final size:123
Alignment explanation
Indices: 151819--152067 Score: 347
Period size: 123 Copynumber: 2.0 Consensus size: 123
151809 GATAGCCATA
* * * *
151819 CTTCCTCATCGCATAGGAACCGTGTTATCTCTATTATCCCTAAAGATGGCTAGACATCCTCATCA
1 CTTCCTCATCACATAAGAACCGTGTTATCTCTATTATCCCTAAAGATGGCCACACATCCTCATCA
* *
151884 CGTAGGAACTGTGTCATCCACCGACCAAATCTCCTCATCACGTAGGAGTC-GCGTCACC
66 CGTAGGAACCGTGCCATCCACCGACCAAATCTCCTCATCACGTAGGAG-CAGCGTCACC
* * * **
151942 CTTCCTCATCACGTAAGAATCGTGTTATCTCTATTATCCCTAAATATGGCCACATGTCCTCATCA
1 CTTCCTCATCACATAAGAACCGTGTTATCTCTATTATCCCTAAAGATGGCCACACATCCTCATCA
* * **
152007 CGTAGGAACCGTGCCATCCACCGACCAGATCTTCTTTTCACGTAGGAGCAGCGTCACC
66 CGTAGGAACCGTGCCATCCACCGACCAAATCTCCTCATCACGTAGGAGCAGCGTCACC
152065 CTT
1 CTT
152068 AGATAACCAG
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
122 1 0.01
123 109 0.99
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.27
Consensus pattern (123 bp):
CTTCCTCATCACATAAGAACCGTGTTATCTCTATTATCCCTAAAGATGGCCACACATCCTCATCA
CGTAGGAACCGTGCCATCCACCGACCAAATCTCCTCATCACGTAGGAGCAGCGTCACC
Found at i:165753 original size:25 final size:25
Alignment explanation
Indices: 165696--165747 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
165686 ACCAATCAAG
165696 TAATTAAACCTATAGTCATACAACA
1 TAATTAAACCTATAGTCATACAACA
165721 TAATTAAACCTATAGTCATACAACA
1 TAATTAAACCTATAGTCATACAACA
165746 TA
1 TA
165748 CATAAAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.48, C:0.19, G:0.04, T:0.29
Consensus pattern (25 bp):
TAATTAAACCTATAGTCATACAACA
Found at i:167375 original size:54 final size:54
Alignment explanation
Indices: 167243--167861 Score: 968
Period size: 54 Copynumber: 11.3 Consensus size: 54
167233 ACTTTATAAT
** * * * ***
167243 TTGCACATTTAGTGCCAATACGGTAATTCATAAACTTATTATGAATTACGGGGGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTC-TTAGG
* *
167298 TTGCACACACAGTGCCAATACGGAAATTCATAAACTTATTATGAATTTCTTAGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGG
*
167352 TTGCACACATAGTGCCAATACGGAAAGTCATAAACTCATTATGAATTTCTTAGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGG
* *
167406 TTGCACACATAGTGCAAATACAGAAATTCATAAACTCATTATGAATTTCTTAGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGG
* *
167460 TTGTACACATAGTGCCAATACGGAAATTCAGAAACTCATTATGAATTTCTTAGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGG
* * *
167514 TAGCACAAATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAAG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGG
* *
167568 TTGCACACATAGTGCCAATACGAAAATTCATAAACTCATTATGAATTATGAATTTTTTAGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTC-------ATTATGAATTTCTTAGG
167629 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGG
167683 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGG
*
167737 TTGCACACATAGTGCCAATACGAAAATTCATAAACTCATTATGAATTTCTTAGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGG
*
167791 TTGCACATATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGG
1 TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGG
167845 TTGCACACATAGTGCCA
1 TTGCACACATAGTGCCA
167862 TTCGGTAATC
Statistics
Matches: 523, Mismatches: 34, Indels: 15
0.91 0.06 0.03
Matches are distributed among these distances:
54 428 0.82
55 44 0.08
61 51 0.10
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (54 bp):
TTGCACACATAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGG
Found at i:167712 original size:277 final size:270
Alignment explanation
Indices: 167252--167861 Score: 986
Period size: 277 Copynumber: 2.2 Consensus size: 270
167242 TTTGCACATT
* * * *** *
167252 TAGTGCCAATACGGTAATTCATAAACTTATTATGAATTACGGGGGGTTGCACACACAGTGCCAAT
1 TAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTC-TTAGGTTGCACACATAGTGCCAAT
*
167317 ACGGAAATTCATAAACTTATTATGAATTTCTTAGGTTGCACACATAGTGCCAATACGGAAAGTCA
65 ACGAAAATTCATAAACTTATTATGAATTTCTTAGGTTGCACACATAGTGCCAATACGGAAAGTCA
167382 TAAACTCATTATGAATTTCTTAGGTTGCACACATAGTGCAAATACAGAAATTCATAAACTCATTA
130 TAAACTCATTATGAATTTCTTAGGTTGCACACATAGTGCAAATACAGAAATTCATAAACTCATTA
* *
167447 TGAATTTCTTAGGTTGTACACATAGTGCCAATACGGAAATTCAGAAACTCATTATGAATTTCTTA
195 TGAATTTCTTAGGTTGCACACATAGTGCCAATACGAAAATTCAGAAACTCATTATGAATTTCTTA
167512 GGTAGCACAAA
260 GGTAGCACAAA
*
167523 TAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAAGTTGCACACATAGTGCCAATA
1 TAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGGTTGCACACATAGTGCCAATA
*
167588 CGAAAATTCATAAACTCATTATGAATTATGAATTTTTTAGGTTGCACACATAGTGCCAATACGGA
66 CGAAAATTCATAAA--C--T-T--ATTATGAATTTCTTAGGTTGCACACATAGTGCCAATACGGA
* * *
167653 AATTCATAAACTCATTATGAATTTCTTAGGTTGCACACATAGTGCCAATACGGAAATTCATAAAC
124 AAGTCATAAACTCATTATGAATTTCTTAGGTTGCACACATAGTGCAAATACAGAAATTCATAAAC
*
167718 TCATTATGAATTTCTTAGGTTGCACACATAGTGCCAATACGAAAATTCATAAACTCATTATGAAT
189 TCATTATGAATTTCTTAGGTTGCACACATAGTGCCAATACGAAAATTCAGAAACTCATTATGAAT
* *
167783 TTCTTAGGTTGCACATA
254 TTCTTAGGTAGCACAAA
167800 TAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGGTTGCACACATAGTGCCA
1 TAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGGTTGCACACATAGTGCCA
167862 TTCGGTAATC
Statistics
Matches: 313, Mismatches: 19, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
270 33 0.11
271 37 0.12
272 1 0.00
274 1 0.00
275 1 0.00
277 240 0.77
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.31
Consensus pattern (270 bp):
TAGTGCCAATACGGAAATTCATAAACTCATTATGAATTTCTTAGGTTGCACACATAGTGCCAATA
CGAAAATTCATAAACTTATTATGAATTTCTTAGGTTGCACACATAGTGCCAATACGGAAAGTCAT
AAACTCATTATGAATTTCTTAGGTTGCACACATAGTGCAAATACAGAAATTCATAAACTCATTAT
GAATTTCTTAGGTTGCACACATAGTGCCAATACGAAAATTCAGAAACTCATTATGAATTTCTTAG
GTAGCACAAA
Found at i:168339 original size:94 final size:95
Alignment explanation
Indices: 168202--168389 Score: 245
Period size: 94 Copynumber: 2.0 Consensus size: 95
168192 ACCATGGTAT
* * * * *
168202 CGATACTTCTATATTGTGGTACCGATACTCCTTTTCAATATCGATACCATTTCTATATTCTGG-A
1 CGATACTTCTATACTATGGTACCGATACTCCTTTACAATATCGATACCATTTCTACATTATGGAA
** * *
168266 TCCTTGGTATCGATACCTTTCTCTTAGTAC
66 TCAATGGTATCGATACCTTCCTCATAGTAC
* * *
168296 CGATACTTCTATACTATGGTACTGATACT-CTATTACAGTATCGATACTATTTCTACATTATGGA
1 CGATACTTCTATACTATGGTACCGATACTCCT-TTACAATATCGATACCATTTCTACATTATGGA
168360 ATCAATGGTATCGATACCTTCCTCATAGTA
65 ATCAATGGTATCGATACCTTCCTCATAGTA
168390 TCAATACCCA
Statistics
Matches: 80, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
93 2 0.03
94 52 0.65
95 26 0.32
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (95 bp):
CGATACTTCTATACTATGGTACCGATACTCCTTTACAATATCGATACCATTTCTACATTATGGAA
TCAATGGTATCGATACCTTCCTCATAGTAC
Found at i:171308 original size:2 final size:2
Alignment explanation
Indices: 171301--171339 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
171291 GACTTAGTAC
171301 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
171340 GAGTGACATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:173905 original size:21 final size:21
Alignment explanation
Indices: 173881--173922 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
173871 TAAAAATCCC
173881 TAAAAAAAATAAAAAATAAAT
1 TAAAAAAAATAAAAAATAAAT
** *
173902 TAAAGTAAATAAAATATAAAT
1 TAAAAAAAATAAAAAATAAAT
173923 GAGGAAAAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (21 bp):
TAAAAAAAATAAAAAATAAAT
Found at i:174030 original size:17 final size:18
Alignment explanation
Indices: 173992--174034 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
173982 AATAAAACAC
*
173992 AATAAAAAATGTAAAATG
1 AATAAAAAAAGTAAAATG
*
174010 AATAAAAAAAGTGAAAT-
1 AATAAAAAAAGTAAAATG
174027 AATAAAAA
1 AATAAAAA
174035 CAAAAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.19
Consensus pattern (18 bp):
AATAAAAAAAGTAAAATG
Found at i:174063 original size:44 final size:43
Alignment explanation
Indices: 173978--174063 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 43
173968 AGAAAATAAA
*
173978 GAAAAATAAAACACAATAAAAAATGTAAAATGAATAAAAAAAGT
1 GAAAAATAAAACACAAAAAAAAATG-AAAATGAATAAAAAAAGT
*
174022 GAAATAATAAAA-ACAAAAAAAAAT-AGAATTGAATAAGAAAAA
1 GAAA-AATAAAACACAAAAAAAAATGA-AAATGAATAA-AAAAA
174064 ACAGAAACTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
42 1 0.03
43 9 0.24
44 20 0.54
45 7 0.19
ACGTcount: A:0.72, C:0.03, G:0.09, T:0.15
Consensus pattern (43 bp):
GAAAAATAAAACACAAAAAAAAATGAAAATGAATAAAAAAAGT
Found at i:174105 original size:2 final size:2
Alignment explanation
Indices: 174100--174146 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
174090 CAGAATAGAA
174100 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
174142 AT AT A
1 AT AT A
174147 GCATTCAATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:177925 original size:506 final size:508
Alignment explanation
Indices: 176972--177989 Score: 1827
Period size: 506 Copynumber: 2.0 Consensus size: 508
176962 GCATCCATTT
*
176972 TCATATGAAGTCTTTCTAAAGTGACCAAATTCTGTTTAGCACAAGATCTCCTTCATGGAATACCC
1 TCATATGAAGTCTTTCTAAAGTGACCAAATTCTCTTTAGCACAAGATCTCCTTCATGGAATA-CC
177037 TTGGGCGTATCTTCTTGTTATGTGCTCGAATCATTCGTTTCTGGTAAATTTGACCATGATGATGG
65 TTGGGCGTATCTTCTTGTTATGTGCTCGAATCATTCGTTTCTGGTAAATTTGACCATGATGATGG
* * *
177102 CTTTCAATCTCTTTTCTTCTATTAGATTCAGCTGATCATATCGGGATTATTTCCATTCTGCATCA
130 ATTTCAATCTCCTTTCTTCTATTAGATTCAGCTGATCATATCGGGATTATATCCATTCTGCATCA
177167 TCCAGTTTGACTTCTGACAGACCCAGAGTAAAGAAATTTCTACCTCAATGGGCAGCACTGCTTCC
195 TCCAGTTTGACTTCTGACAGACCCAGAGTAAAGAAATTTCTACCTCAATGGGCAGCACTGCTTCC
177232 ATCCCATAGCCAATGAGAATGGGGTTCCCCAATCGAAGTTCGTATCGAGGTTCGATAGGTAAACA
260 ATCCCATAGCCAATGAGAATGGGGTTCCCCAATCGAAGTTCGTATCGAGGTTCGATAGGTAAACA
177297 AAGCAAAAGGCAATTTCTCATACCAAGCCTTGTAGAGGTCTCATCATTTCTCCACTATCTTCTTG
325 AAGCAAAAGGCAATTTCTCATACCAAGCCTTGTA-AGGTCTCATCATTTCTCCACTATCTTCTTG
*
177362 ATGTTTTTATTTGCTACTTCTACTGCTCCGTTCATCTTCGGTCTATAAGCAGTAGAGTTGTGATG
389 ATGTTTTTATTTGCTACTTCTACTACTCCGTTCATCTTCGGTCTATAAGCAGTAGAGTTGTGATG
177427 CTTTATGTTG-TACTCGCAAGCAGCATCCAT-A-TTTTTTGTTCAAGTTTGTAGC
454 CTTTATGTTGATACTCGCAAGCAGCATCCATAATTTTTTTGTTCAAGTTTGTAGC
177479 TCATATGAAGTCTTTCTAAAGTGACCAAATTCTCTTTAGCACAAGATCTCC-TCATGGAAT-CCT
1 TCATATGAAGTCTTTCTAAAGTGACCAAATTCTCTTTAGCACAAGATCTCCTTCATGGAATACCT
177542 TGGGCGTATCTTCTTGTTATGTGCTCGAATCATTCGTTTCTGGTAAATTTGACCATGATGAATGG
66 TGGGCGTATCTTCTTGTTATGTGCTCGAATCATTCGTTTCTGGTAAATTTGACCATGATG-ATGG
177607 ATTTCAATCTCCTTTCTTCTATTAGATTCAGCTGATCATATCGGGATTATATCCATTCTGCATCA
130 ATTTCAATCTCCTTTCTTCTATTAGATTCAGCTGATCATATCGGGATTATATCCATTCTGCATCA
*
177672 TCCAGTTTGACTTCTGACAAGACCCGGAGTAAAGAAATTTCTACCTCAAT-GGCAGCACTGCTTT
195 TCCAGTTTGACTTCTGAC-AGACCCAGAGTAAAGAAATTTCTACCTCAATGGGCAGCACTGC-TT
177736 CCATCCCATATGCCAATGAGAATGGGGTTCCCCAATCGAAGTTCGTATCGAGGTTCGATAGGT-A
258 CCATCCCATA-GCCAATGAGAATGGGGTTCCCCAATCGAAGTTCGTATCGAGGTTCGATAGGTAA
*
177800 ACAAAGCAAAAGGCAATTTCTCATACCAATCCTTGT-AGGTCTCAGTCATTTTCTCCACTATCTT
322 ACAAAGCAAAAGGCAATTTCTCATACCAAGCCTTGTAAGGTCTCA-TCA-TTTCTCCACTATCTT
177864 CTTGATGTTTTTATTTGCTACTTCTACTACTCCGTTCATCTTCGGTCTATAAGCAGTAGAGTTGT
385 CTTGATGTTTTTATTTGCTACTTCTACTACTCCGTTCATCTTCGGTCTATAAGCAGTAGAGTTGT
177929 GATGCTTTATGTTGAATTACTCGCAAGCAGCATCCATAATTTTTTTGTTCAAGTTTGTAGC
450 GATGCTTTATGTTG-A-TACTCGCAAGCAGCATCCATAATTTTTTTGTTCAAGTTTGTAGC
177990 ATTATCGATA
Statistics
Matches: 493, Mismatches: 7, Indels: 18
0.95 0.01 0.03
Matches are distributed among these distances:
504 71 0.14
505 98 0.20
506 180 0.37
507 102 0.21
509 20 0.04
510 1 0.00
511 21 0.04
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (508 bp):
TCATATGAAGTCTTTCTAAAGTGACCAAATTCTCTTTAGCACAAGATCTCCTTCATGGAATACCT
TGGGCGTATCTTCTTGTTATGTGCTCGAATCATTCGTTTCTGGTAAATTTGACCATGATGATGGA
TTTCAATCTCCTTTCTTCTATTAGATTCAGCTGATCATATCGGGATTATATCCATTCTGCATCAT
CCAGTTTGACTTCTGACAGACCCAGAGTAAAGAAATTTCTACCTCAATGGGCAGCACTGCTTCCA
TCCCATAGCCAATGAGAATGGGGTTCCCCAATCGAAGTTCGTATCGAGGTTCGATAGGTAAACAA
AGCAAAAGGCAATTTCTCATACCAAGCCTTGTAAGGTCTCATCATTTCTCCACTATCTTCTTGAT
GTTTTTATTTGCTACTTCTACTACTCCGTTCATCTTCGGTCTATAAGCAGTAGAGTTGTGATGCT
TTATGTTGATACTCGCAAGCAGCATCCATAATTTTTTTGTTCAAGTTTGTAGC
Found at i:179464 original size:22 final size:22
Alignment explanation
Indices: 179446--179487 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
179436 AGGAAGAATA
*
179446 AAAAAATAAAAAATAAAGAAGT
1 AAAAAACAAAAAATAAAGAAGT
* *
179468 TAAAAACAGAAAATAAAGAA
1 AAAAAACAAAAAATAAAGAA
179488 AAATAAACAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.76, C:0.02, G:0.10, T:0.12
Consensus pattern (22 bp):
AAAAAACAAAAAATAAAGAAGT
Found at i:179618 original size:2 final size:2
Alignment explanation
Indices: 179611--179664 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
179601 ATAGAAAAAT
*
179611 TA TA TA TA TA TA TA TA TA TA TA GA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
179653 TA TA TA TA TA TA
1 TA TA TA TA TA TA
179665 GCATTCAATA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:182760 original size:61 final size:62
Alignment explanation
Indices: 182624--182752 Score: 147
Period size: 61 Copynumber: 2.1 Consensus size: 62
182614 TCGCCCTTTA
* * * * * *
182624 GGGTTTTCACCCTAAAC-ATTTTTCTTTTTTTATTTTCTTTTTCAATTTAGGGTGACCTTTC
1 GGGTTTTCACCCTAATCGTTTTTTCTTTTTCTATTTTCTTCTTCAACTTAGGGTGACCTCTC
* * *
182685 GTGTTTTCACCCTAATCGTTTTTTCTTTTTCT-TTTTCTTCTTCGACTT-GGGATGCCCTCTC
1 GGGTTTTCACCCTAATCGTTTTTTCTTTTTCTATTTTCTTCTTCAACTTAGGG-TGACCTCTC
182746 GGGTTTT
1 GGGTTTT
182753 TATCCTAAGT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
60 3 0.05
61 41 0.73
62 12 0.21
ACGTcount: A:0.12, C:0.21, G:0.14, T:0.53
Consensus pattern (62 bp):
GGGTTTTCACCCTAATCGTTTTTTCTTTTTCTATTTTCTTCTTCAACTTAGGGTGACCTCTC
Found at i:184895 original size:22 final size:21
Alignment explanation
Indices: 184856--184900 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
184846 TAAAAAATAA
**
184856 AAAAATAAAGAAGTTAAAAAC
1 AAAAATAAAGAAAATAAAAAC
184877 AAAAATAAAGAAAAATAAAAAC
1 AAAAATAAAG-AAAATAAAAAC
184899 AA
1 AA
184901 TAAAAATGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.78, C:0.04, G:0.07, T:0.11
Consensus pattern (21 bp):
AAAAATAAAGAAAATAAAAAC
Found at i:184896 original size:21 final size:21
Alignment explanation
Indices: 184872--184948 Score: 50
Period size: 22 Copynumber: 3.5 Consensus size: 21
184862 AAAGAAGTTA
184872 AAAACAAAAATAAAGAAAAAT
1 AAAACAAAAATAAAGAAAAAT
*
184893 AAAAACAATAAA-AATGTAAATGAAT
1 -AAAACAA-AAATAAAG-AAA--AAT
* * *
184918 AAAAC-AAAGTGAAATAAGAAT
1 AAAACAAAAAT-AAAGAAAAAT
184939 AAAACAAAAA
1 AAAACAAAAA
184949 AATAGAATTG
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
21 8 0.19
22 15 0.36
23 9 0.21
24 7 0.17
25 3 0.07
ACGTcount: A:0.74, C:0.05, G:0.08, T:0.13
Consensus pattern (21 bp):
AAAACAAAAATAAAGAAAAAT
Found at i:185016 original size:2 final size:2
Alignment explanation
Indices: 185011--185058 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
185001 AATAGAAATA
185011 AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
185052 AT AT AT A
1 AT AT AT A
185059 ATAGCATTCA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 44 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:188165 original size:61 final size:62
Alignment explanation
Indices: 188029--188157 Score: 147
Period size: 61 Copynumber: 2.1 Consensus size: 62
188019 TCGCCCTTTA
* * * * * *
188029 GGGTTTTCACCCTAAAC-ATTTTTCTTTTTTTATTTTCTTTTTCAATTTAGGGTGACCTTTC
1 GGGTTTTCACCCTAATCGTTTTTTCTTTTTCTATTTTCTTCTTCAACTTAGGGTGACCTCTC
* * *
188090 GTGTTTTCACCCTAATCGTTTTTTCTTTTTCT-TTTTCTTCTTCGACTT-GGGATGCCCTCTC
1 GGGTTTTCACCCTAATCGTTTTTTCTTTTTCTATTTTCTTCTTCAACTTAGGG-TGACCTCTC
188151 GGGTTTT
1 GGGTTTT
188158 TATCCTAAGT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
60 3 0.05
61 41 0.73
62 12 0.21
ACGTcount: A:0.12, C:0.21, G:0.14, T:0.53
Consensus pattern (62 bp):
GGGTTTTCACCCTAATCGTTTTTTCTTTTTCTATTTTCTTCTTCAACTTAGGGTGACCTCTC
Done.