genome.fa.s8257.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008257.1 Hibiscus syriacus cultivar Beakdansim tig00110910_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140121

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4513--4550	11	3.2	12	85	7	51	10	18	2	68	1.30
7695--8008	58	5.4	59	82	5	347	38	10	22	28	1.87
7691--8027	117	2.9	113	80	9	378	37	10	22	29	1.87
7694--8054	114	3.2	113	80	10	331	37	10	22	29	1.88
8025--8167	60	2.4	60	90	0	223	34	12	23	30	1.92
8368--8847	44	11.0	44	89	2	664	40	6	19	33	1.79
8458--8530	23	3.3	23	61	7	60	47	2	16	32	1.61
14341--14645	118	2.6	118	80	7	316	36	10	22	30	1.88
14336--14673	59	5.7	59	75	10	239	36	11	22	29	1.89
14559--14733	60	2.9	60	88	2	244	36	12	21	30	1.90
14591--14779	60	3.2	60	85	6	199	37	12	21	29	1.90
16897--16945	19	2.7	17	84	9	53	26	20	28	24	1.99
17435--17609	60	2.9	60	87	2	235	36	12	21	30	1.89
17467--17655	60	3.2	60	85	6	208	37	12	21	29	1.89
17438--17655	60	3.7	60	82	6	205	38	11	19	30	1.88
17761--18101	44	8.0	44	86	8	445	39	7	19	33	1.81
17957--18024	32	2.1	32	97	0	127	42	8	20	27	1.82
17913--18054	76	1.9	76	92	0	239	40	9	19	30	1.83
17869--18103	120	2.0	120	88	2	355	38	8	20	32	1.83
17989--18122	45	3.0	45	87	1	189	34	7	22	35	1.82
24489--24519	3	10.0	3	93	6	53	67	32	0	0	0.91
30270--30365	47	2.0	47	89	0	147	41	21	6	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31434--31503	22	3.2	22	83	4	88	12	18	41	27	1.87
33057--33182	55	2.3	55	80	4	139	36	23	13	26	1.92
33090--33234	55	2.7	53	87	5	193	31	21	17	29	1.96
37975--38029	25	2.2	25	86	0	83	20	20	20	40	1.92
39784--39851	27	2.6	27	90	4	113	41	17	11	29	1.85
47334--47393	9	6.8	9	81	7	54	23	40	31	5	1.76
47346--47390	13	3.8	13	72	22	53	22	42	28	6	1.79
47337--47393	22	2.6	22	94	0	105	22	42	29	5	1.76
47414--47452	19	2.1	19	95	0	69	23	41	30	5	1.76
48761--48795	18	1.9	18	88	0	52	54	0	17	28	1.43
52505--52594	22	4.1	22	75	5	92	25	35	30	8	1.86
52512--52546	18	1.9	18	100	0	70	22	34	31	11	1.90
53942--53976	18	1.9	18	88	0	52	54	0	17	28	1.43
56411--56563	68	2.2	70	89	5	238	41	9	13	34	1.78
58620--58803	64	2.8	64	79	7	174	41	9	5	43	1.59
62492--62699	63	3.4	60	75	15	169	44	8	3	43	1.52
62459--62699	63	3.8	62	75	18	157	45	8	3	42	1.50
67448--67510	32	2.0	32	90	3	101	39	11	19	30	1.86
68898--68993	45	2.1	45	92	1	156	20	7	33	38	1.81
68965--69625	328	2.0	333	97	2	1262	35	8	21	35	1.84
72176--72215	20	2.0	20	85	5	53	30	5	15	50	1.65
75420--75454	18	2.0	18	88	5	54	37	22	8	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82905--82939	13	2.7	13	95	0	61	28	20	17	34	1.95
82918--83083	85	2.0	85	93	0	287	29	21	18	30	1.97
101090--101141	17	3.1	16	81	8	68	15	9	9	65	1.47
101210--101266	17	3.4	17	78	7	62	22	17	12	47	1.81
111743--111949	54	3.8	54	83	0	234	33	17	12	35	1.88
111743--111949	108	1.9	108	82	0	261	33	17	12	35	1.88
112002--112030	15	1.9	15	100	0	58	48	17	6	27	1.72
115749--115778	9	3.2	9	95	4	51	80	0	0	20	0.72
116524--116608	40	2.2	37	91	6	134	63	10	1	24	1.33
117867--117910	21	2.1	21	87	8	63	50	2	2	45	1.27
118446--118471	13	2.0	13	100	0	52	46	7	0	46	1.31
118583--118667	36	2.4	36	81	0	107	38	21	4	35	1.74
119401--119477	33	2.4	32	82	8	86	64	6	7	20	1.42
120846--120921	38	2.0	40	89	5	120	47	9	2	40	1.49
120891--120954	33	1.9	33	83	3	83	48	14	4	32	1.64
120991--121035	22	2.0	22	86	0	63	40	13	0	46	1.43
121706--121843	58	2.4	58	96	0	249	22	16	18	42	1.89
129325--129378	24	2.2	24	86	0	72	18	18	25	37	1.94
129334--129386	24	2.2	24	86	0	79	24	13	26	35	1.92
133055--133088	5	6.8	5	93	0	59	79	2	0	17	0.86
134507--134822	76	4.2	74	76	10	304	42	11	3	42	1.56
134778--134805	14	2.0	14	100	0	56	42	14	7	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134505--134828	38	8.6	38	78	11	269	43	11	3	41	1.56
134797--134841	22	2.0	22	86	0	63	42	15	0	42	1.47
136124--136177	24	2.2	25	83	9	67	70	11	1	16	1.25

Tables:   1

The End!