Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008259.1 Hibiscus syriacus cultivar Beakdansim tig00110912_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2373650
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 11
Found at i:1319254 original size:59 final size:60
Alignment explanation
Indices: 1319138--1319317 Score: 161
Period size: 61 Copynumber: 3.0 Consensus size: 60
1319128 CTGTTTATAT
* * * * *
1319138 TATTTTAGTTCTTTAAATTTTTGTTTTTGTTATTTTAGTCCCTTAAGTTTTTA-TTTTTC
1 TATTTTAGTCCTTTAAATGTCTGTTTTTGTTATTTTAATCCCTTAAGTTTCTATTTTTTC
*
1319197 TATTTTAGTCCTTTAAATGTCTGTTTTT-TCTA-TTTAATCCCTTCAGTTTCTATTTTTTTTC
1 TATTTTAGTCCTTTAAATGTCTGTTTTTGT-TATTTTAATCCCTTAAGTTTCTA--TTTTTTC
* * * * * ** * *
1319258 TATTTTGGACCTTTAAAT-TCCTATTTGTATTATTTTGGTCCTTTTAGTTTCTATTTTTTC
1 TATTTTAGTCCTTTAAATGT-CTGTTTTTGTTATTTTAATCCCTTAAGTTTCTATTTTTTC
1319318 ATTATGGTCC
Statistics
Matches: 100, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
58 18 0.18
59 27 0.27
60 8 0.08
61 30 0.30
62 17 0.17
ACGTcount: A:0.17, C:0.13, G:0.08, T:0.62
Consensus pattern (60 bp):
TATTTTAGTCCTTTAAATGTCTGTTTTTGTTATTTTAATCCCTTAAGTTTCTATTTTTTC
Found at i:1319312 original size:30 final size:28
Alignment explanation
Indices: 1319252--1319329 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 28
1319242 GTTTCTATTT
*
1319252 TTTTTCTATTTTGGACCTTTAAATTCCTA
1 TTTTT-TATTTTGGTCCTTTAAATTCCTA
* * *
1319281 TTTGTATTATTTTGGTCCTTTTAGTTTCTA
1 TTT-T-TTATTTTGGTCCTTTAAATTCCTA
*
1319311 TTTTTTCATTATGGTCCTT
1 TTTTTT-ATTTTGGTCCTT
1319330 GTAATTATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
28 2 0.05
29 15 0.37
30 23 0.56
31 1 0.02
ACGTcount: A:0.15, C:0.14, G:0.10, T:0.60
Consensus pattern (28 bp):
TTTTTTATTTTGGTCCTTTAAATTCCTA
Found at i:1328331 original size:20 final size:20
Alignment explanation
Indices: 1328306--1328371 Score: 57
Period size: 19 Copynumber: 3.3 Consensus size: 20
1328296 TGAAAAGATT
1328306 TAATAAAATTAAATAGATAA
1 TAATAAAATTAAATAGATAA
* *
1328326 TAAT-AAA-TAAAAAGAGAAA
1 TAATAAAATTAAATAGA-TAA
*
1328345 TAATAAAATAATAAATA-TTAA
1 TAATAAAAT--TAAATAGATAA
1328366 TAATAA
1 TAATAA
1328372 TAAATAAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
18 7 0.19
19 9 0.25
20 7 0.19
21 8 0.22
23 5 0.14
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (20 bp):
TAATAAAATTAAATAGATAA
Found at i:1328372 original size:16 final size:15
Alignment explanation
Indices: 1328342--1328378 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
1328332 ATAAAAAGAG
1328342 AAATAATAAAATAAT
1 AAATAATAAAATAAT
*
1328357 AAATATTAATAATAAT
1 AAATAATAA-AATAAT
1328373 AAATAA
1 AAATAA
1328379 AAAGGGGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAATAATAAAATAAT
Found at i:1329209 original size:75 final size:75
Alignment explanation
Indices: 1329029--1329232 Score: 263
Period size: 75 Copynumber: 2.7 Consensus size: 75
1329019 TAAAACATCT
* ** * *
1329029 TAAATCCTAATTAAAACGCTTAAAA-CTATTTAAACTAAAATACTTAAAA-AATA-ATAATATTT
1 TAAAACCTAATTAAAATAC-TAAAACCTATTTAAACTAAAATACTTAAAACAA-AGATAAAATTA
*
1329091 AAAATAATATTC
64 AAAATAATATCC
* * *
1329103 TAAATCCTAATTAAAATACTGAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAA
1 TAAAACCTAATTAAAATACTAAAACCTATTTAAACTAAAATACTTAAAACAAAGATAAAAT-TAA
1329168 AAATAATATCC
65 AAATAATATCC
*
1329179 TAAAACTTAATT-AAATACTAAAACCTATTTAAACTAAAATACTTAAAACAAAGA
1 TAAAACCTAATTAAAATACTAAAACCTATTTAAACTAAAATACTTAAAACAAAGA
1329233 ATTCCATCCT
Statistics
Matches: 115, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
73 4 0.03
74 41 0.36
75 48 0.42
76 22 0.19
ACGTcount: A:0.56, C:0.13, G:0.02, T:0.29
Consensus pattern (75 bp):
TAAAACCTAATTAAAATACTAAAACCTATTTAAACTAAAATACTTAAAACAAAGATAAAATTAAA
AATAATATCC
Found at i:1331048 original size:20 final size:20
Alignment explanation
Indices: 1331005--1331052 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
1330995 TGTTTAGAGA
* *
1331005 AAAATAAAATAAAATTAATT
1 AAAATAAAATAAAATGAATG
1331025 AAAATAAAAT-AAATAGAATG
1 AAAATAAAATAAAAT-GAATG
1331045 AAAATAAA
1 AAAATAAA
1331053 GTTTGCTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (20 bp):
AAAATAAAATAAAATGAATG
Found at i:1331072 original size:5 final size:5
Alignment explanation
Indices: 1331005--1331052 Score: 53
Period size: 5 Copynumber: 9.6 Consensus size: 5
1330995 TGTTTAGAGA
* * *
1331005 AAAAT AAAAT AAAAT TAATT AAAAT AAAAT -AAAT AGAAT GAAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAA
1331053 GTTTGCTAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
4 4 0.11
5 27 0.77
6 4 0.11
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (5 bp):
AAAAT
Found at i:1331077 original size:11 final size:11
Alignment explanation
Indices: 1331061--1331105 Score: 65
Period size: 11 Copynumber: 4.1 Consensus size: 11
1331051 AAGTTTGCTA
1331061 AAAAATAAAAT
1 AAAAATAAAAT
*
1331072 AAAAATAAAAC
1 AAAAATAAAAT
1331083 AAAAATAAAAT
1 AAAAATAAAAT
1331094 GAAAAA-AAAAT
1 -AAAAATAAAAT
1331105 A
1 A
1331106 GAACGAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
10 1 0.03
11 25 0.81
12 5 0.16
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.13
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:1331113 original size:16 final size:17
Alignment explanation
Indices: 1331067--1331113 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
1331057 GCTAAAAAAT
**
1331067 AAAATAAAAATAAAACA
1 AAAATAAAACGAAAACA
*
1331084 AAAATAAAATGAAAA-A
1 AAAATAAAACGAAAACA
*
1331100 AAAATAGAACGAAA
1 AAAATAAAACGAAA
1331114 TGGGTTGCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
16 13 0.50
17 13 0.50
ACGTcount: A:0.79, C:0.04, G:0.06, T:0.11
Consensus pattern (17 bp):
AAAATAAAACGAAAACA
Found at i:1336096 original size:2 final size:2
Alignment explanation
Indices: 1336087--1336131 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
1336077 ATCATAAAAT
1336087 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1336128 TA TA
1 TA TA
1336132 ATAAAACCAC
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:1344041 original size:43 final size:43
Alignment explanation
Indices: 1343980--1344107 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 43
1343970 TCAAGAATAT
*
1343980 TTTTAATATGCTAGTTTGATGTATTTGTGGATTGTTA-TGTT-A
1 TTTTAATATGTTAGTTTGATGTATTTGTGGATTGTTACT-TTGA
*
1344022 GTTTTAATATTTTAGTTTGAT-TAATTTGTGGATTGTTACTTTGA
1 -TTTTAATATGTTAGTTTGATGT-ATTTGTGGATTGTTACTTTGA
* * * * * *
1344066 TTTTAATATGTTAGCTAGGTGTATTTGTAGATTATTAGTTTG
1 TTTTAATATGTTAGTTTGATGTATTTGTGGATTGTTACTTTG
1344108 GAATTCATAC
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
42 1 0.01
43 68 0.94
44 3 0.04
ACGTcount: A:0.23, C:0.02, G:0.20, T:0.55
Consensus pattern (43 bp):
TTTTAATATGTTAGTTTGATGTATTTGTGGATTGTTACTTTGA
Found at i:1346263 original size:18 final size:19
Alignment explanation
Indices: 1346228--1346272 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
1346218 TATGATTTCA
*
1346228 AAAATAAAAATTAGACTTT
1 AAAATAAAAATTAAACTTT
1346247 AAAATAAAAA-TAAACTTT
1 AAAATAAAAATTAAACTTT
*
1346265 ATAATAAA
1 AAAATAAA
1346273 TATCAAAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAATAAAAATTAAACTTT
Found at i:1348053 original size:19 final size:19
Alignment explanation
Indices: 1348005--1348054 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
1347995 AATAAATTAT
** *
1348005 TTAATATATAGAAAGCAAG
1 TTAATATATAGTTAGCAAA
*
1348024 TTAAT-TATAGTTAGTAAA
1 TTAATATATAGTTAGCAAA
1348042 TTAATATATAGTT
1 TTAATATATAGTT
1348055 GATTAAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 14 0.54
19 12 0.46
ACGTcount: A:0.46, C:0.02, G:0.12, T:0.40
Consensus pattern (19 bp):
TTAATATATAGTTAGCAAA
Found at i:1348082 original size:22 final size:22
Alignment explanation
Indices: 1348057--1348133 Score: 75
Period size: 22 Copynumber: 3.5 Consensus size: 22
1348047 ATATAGTTGA
1348057 TTAAAATATATTAATAAGTTAT
1 TTAAAATATATTAATAAGTTAT
* ** *
1348079 TTAATATATAGAAAGTAAGTTAA
1 TTAAAATATATTAA-TAAGTTAT
*
1348102 TTAAAATATATTAA-AATATTAT
1 TTAAAATATATTAATAA-GTTAT
*
1348124 TTAATATATA
1 TTAAAATATA
1348134 GAAAGTATGT
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
21 2 0.05
22 23 0.53
23 18 0.42
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (22 bp):
TTAAAATATATTAATAAGTTAT
Found at i:1348086 original size:20 final size:20
Alignment explanation
Indices: 1348061--1348132 Score: 56
Period size: 20 Copynumber: 3.4 Consensus size: 20
1348051 AGTTGATTAA
1348061 AATATATTAATAAGTTATTT
1 AATATATTAATAAGTTATTT
* *
1348081 AATATATAGAAAGTAAGTTAATTAA
1 AATATAT--TAA-TAAGTT-ATT-T
*
1348106 AATATATTAA-AATATTATTT
1 AATATATTAATAA-GTTATTT
1348126 AATATAT
1 AATATAT
1348133 AGAAAGTATG
Statistics
Matches: 41, Mismatches: 5, Indels: 12
0.71 0.09 0.21
Matches are distributed among these distances:
20 14 0.34
21 5 0.12
22 4 0.10
23 8 0.20
24 3 0.07
25 7 0.17
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (20 bp):
AATATATTAATAAGTTATTT
Found at i:1348105 original size:23 final size:23
Alignment explanation
Indices: 1348071--1348145 Score: 82
Period size: 23 Copynumber: 3.3 Consensus size: 23
1348061 AATATATTAA
1348071 TAAGTTATTTAATATATAGAAAG
1 TAAGTTATTTAATATATAGAAAG
* * * *
1348094 TAAGTTAATTAAAATATATTAAAA
1 TAAGTTATTTAATATATA-GAAAG
1348118 T-A-TTATTTAATATATAGAAAG
1 TAAGTTATTTAATATATAGAAAG
*
1348139 TATGTTA
1 TAAGTTA
1348146 GTAAATTATT
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
21 4 0.10
22 12 0.30
23 20 0.50
24 4 0.10
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.41
Consensus pattern (23 bp):
TAAGTTATTTAATATATAGAAAG
Found at i:1348105 original size:45 final size:45
Alignment explanation
Indices: 1348051--1348170 Score: 151
Period size: 45 Copynumber: 2.8 Consensus size: 45
1348041 ATTAATATAT
* *
1348051 AGTTGATTAAAATATATTAATAA-GTTATTTAATATATAGAAAGTA
1 AGTTAATTAAAATATATTAA-AATATTATTTAATATATAGAAAGTA
1348096 AGTTAATTAAAATATATTAAAATATTATTTAATATATAGAAAGTA
1 AGTTAATTAAAATATATTAAAATATTATTTAATATATAGAAAGTA
* * *
1348141 TGTT-AGTAAATTAT-TTAAAATA-TA-TTAATA
1 AGTTAATTAAAATATATTAAAATATTATTTAATA
1348171 AATAATTTTA
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
41 6 0.09
42 2 0.03
43 8 0.12
44 10 0.14
45 43 0.62
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (45 bp):
AGTTAATTAAAATATATTAAAATATTATTTAATATATAGAAAGTA
Found at i:1348292 original size:16 final size:17
Alignment explanation
Indices: 1348254--1348293 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
1348244 AATAATTGTA
1348254 TTAATTATATTTATTTC
1 TTAATTATATTTATTTC
1348271 TT-ATTATA-TTATTT-
1 TTAATTATATTTATTTC
1348285 TTAAATTAT
1 TT-AATTAT
1348294 TTAAAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.10
15 6 0.29
16 11 0.52
17 2 0.10
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (17 bp):
TTAATTATATTTATTTC
Found at i:1349341 original size:18 final size:19
Alignment explanation
Indices: 1349306--1349355 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 19
1349296 TATTTTAATC
*
1349306 AACTATATATTAATTTACT
1 AACTATATATTAACTTACT
1349325 AACTATA-ATTAACTTACT
1 AACTATATATTAACTTACT
**
1349343 TTCTATATATTAA
1 AACTATATATTAA
1349356 ATAATCAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (19 bp):
AACTATATATTAACTTACT
Found at i:1353141 original size:49 final size:49
Alignment explanation
Indices: 1353088--1353181 Score: 152
Period size: 49 Copynumber: 1.9 Consensus size: 49
1353078 GAGAAGTAGC
* * *
1353088 TCCTAATTTTCTACTAACTTACTAACAAGATAATAATTTAAATAACAGT
1 TCCTAATTATCTACTAAATTACTAACAAAATAATAATTTAAATAACAGT
*
1353137 TCCTAATTATCTACTAAATTACTAACAAAATAATAATTTGAATAA
1 TCCTAATTATCTACTAAATTACTAACAAAATAATAATTTAAATAA
1353182 GCATTATAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (49 bp):
TCCTAATTATCTACTAAATTACTAACAAAATAATAATTTAAATAACAGT
Found at i:1366406 original size:37 final size:37
Alignment explanation
Indices: 1366353--1366457 Score: 147
Period size: 37 Copynumber: 2.8 Consensus size: 37
1366343 CTTTTTCGTC
*
1366353 CTACTAGGATTCAAACTCATAAAAATAGGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
1366390 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
1366427 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
1366458 CCACAAGCAC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:1367321 original size:22 final size:21
Alignment explanation
Indices: 1367256--1367325 Score: 65
Period size: 22 Copynumber: 3.3 Consensus size: 21
1367246 TTTTAAGTGC
* *
1367256 TATA-TTTTATAATATTATACA
1 TATATTTTTATTATATTATA-T
*
1367277 TATATTTTCTATTA-ATT-TTT
1 TATATTTT-TATTATATTATAT
1367297 TATATTTTTATTATCATTATAT
1 TATATTTTTATTAT-ATTATAT
1367319 TATATTT
1 TATATTT
1367326 ATTTTCATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
19 5 0.12
20 8 0.20
21 8 0.20
22 15 0.38
23 4 0.10
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (21 bp):
TATATTTTTATTATATTATAT
Found at i:1367384 original size:2 final size:2
Alignment explanation
Indices: 1367377--1367429 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
1367367 TTACTATTAG
1367377 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1367419 TA TA TA T- TA TA
1 TA TA TA TA TA TA
1367430 CACAAGTTAA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 49 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1367749 original size:24 final size:23
Alignment explanation
Indices: 1367722--1367806 Score: 75
Period size: 24 Copynumber: 3.6 Consensus size: 23
1367712 TCGTACTTTG
1367722 TTATTATTATTTTGTTTATTTTTT
1 TTATTATTATTTT-TTTATTTTTT
* *
1367746 TTATT-TTCTTTTTCTTTTTCTTTT
1 TTATTATTATTTTT-TTATT-TTTT
*
1367770 TTA-TATATATTTTATTATTTTTT
1 TTATTAT-TATTTTTTTATTTTTT
*
1367793 TTACTTACTATTTT
1 TTA-TTATTATTTT
1367807 ATCTTTGCTT
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
22 1 0.02
23 18 0.37
24 23 0.47
25 7 0.14
ACGTcount: A:0.16, C:0.06, G:0.01, T:0.76
Consensus pattern (23 bp):
TTATTATTATTTTTTTATTTTTT
Found at i:1367763 original size:18 final size:18
Alignment explanation
Indices: 1367728--1367769 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
1367718 TTTGTTATTA
*
1367728 TTATTTTGTTTATTTTTT
1 TTATTTTCTTTATTTTTT
*
1367746 TTATTTTCTTT-TTCTTT
1 TTATTTTCTTTATTTTTT
*
1367763 TTCTTTT
1 TTATTTT
1367770 TTATATATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.07, C:0.07, G:0.02, T:0.83
Consensus pattern (18 bp):
TTATTTTCTTTATTTTTT
Found at i:1367794 original size:12 final size:12
Alignment explanation
Indices: 1367722--1367795 Score: 55
Period size: 11 Copynumber: 6.2 Consensus size: 12
1367712 TCGTACTTTG
1367722 TTATTATTATTTT
1 TTATTATT-TTTT
*
1367735 GT-TTATTTTTT
1 TTATTATTTTTT
*
1367746 TTATT-TTCTTT
1 TTATTATTTTTT
* *
1367757 TTCTTTTTCTTTT
1 TTATTATT-TTTT
* *
1367770 TTA-TATATATT
1 TTATTATTTTTT
1367781 TTATTATTTTTT
1 TTATTATTTTTT
1367793 TTA
1 TTA
1367796 CTTACTATTT
Statistics
Matches: 46, Mismatches: 11, Indels: 9
0.70 0.17 0.14
Matches are distributed among these distances:
11 20 0.43
12 20 0.43
13 6 0.13
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (12 bp):
TTATTATTTTTT
Found at i:1370833 original size:16 final size:15
Alignment explanation
Indices: 1370812--1370866 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 15
1370802 AAAGGGCAAA
1370812 AACAAAAAAGAAAAG
1 AACAAAAAAGAAAAG
1370827 AAGCAAAAAAGAAGAA-
1 AA-CAAAAAAGAA-AAG
*
1370843 AACAAAAAAAAGAAAG
1 AACAAAAAAGA-AAAG
1370859 AACAAAAA
1 AACAAAAA
1370867 TCAAAAAGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
15 12 0.34
16 21 0.60
17 2 0.06
ACGTcount: A:0.80, C:0.07, G:0.13, T:0.00
Consensus pattern (15 bp):
AACAAAAAAGAAAAG
Found at i:1371721 original size:23 final size:21
Alignment explanation
Indices: 1371694--1371756 Score: 63
Period size: 24 Copynumber: 2.8 Consensus size: 21
1371684 TGAAAGAGAC
1371694 AATATTTTCAAAACTTTTGATT
1 AATATTTTCAAAACTTTT-ATT
*
1371716 AAATATTTTTCGAAACTCTTTATT
1 -AATA-TTTTCAAAACT-TTTATT
* *
1371740 GATATTTTCAGAACTTT
1 AATATTTTCAAAACTTT
1371757 GAAAATAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 2 0.06
22 9 0.26
23 7 0.21
24 13 0.38
25 3 0.09
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.49
Consensus pattern (21 bp):
AATATTTTCAAAACTTTTATT
Found at i:1371943 original size:18 final size:19
Alignment explanation
Indices: 1371920--1371956 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
1371910 TCAACATCAA
1371920 ATATTGGGGCATT-TTTGG
1 ATATTGGGGCATTATTTGG
1371938 ATATTGGGGCATTATTTGG
1 ATATTGGGGCATTATTTGG
1371957 GGATTCAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.19, C:0.05, G:0.32, T:0.43
Consensus pattern (19 bp):
ATATTGGGGCATTATTTGG
Found at i:1372561 original size:106 final size:106
Alignment explanation
Indices: 1372333--1373812 Score: 2064
Period size: 106 Copynumber: 14.0 Consensus size: 106
1372323 ATATCGTGCC
* * * * * * * * *
1372333 ACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGACAA-CAATAATTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
** *
1372397 AATTTTGGGGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
1372438 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
* *
1372503 ATTTTCATAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * *
1372544 ACTCCAGATAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTCT
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
* *
1372609 AATTTCAAAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * * *
1372650 ACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTATCAACAAAAAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
*
1372715 AATTTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
1372756 ACTCCAGACAACGCAAGTTCAACTTCACGACGAATGGACTGCTGGTTGTCAATAAATAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
* *
1372821 AATTTCAGAGCCAATTTCAACTTCACAGCGAATGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
1372862 ACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
* *
1372927 AATTTCAGAGTCAATTTCAACTTCACAACGATGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * *
1372968 ACTCCAGACAACGCAAGTTCAACTTCACGACGGAGGGACTGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
1373033 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
1373074 ACTCCAGACAACGCAAGTTCAACTTCACGACGAATGGACCGCTGGTTGTCAACAAACAA-TTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
*
1373138 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
1373179 ACTCAAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
* *
1373244 AATTTCAGAGCCAATTTCATCTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
1373285 ACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
* * *
1373350 AATTTTAGAGTCAATTTCAACCTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
1373391 ACTCCAGACAACGCAAGTTCAACTCCATGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
*
1373456 AATTTCAGAGCCAATTTCAACTTCACAGC-ATAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGA-AGGATATTGG
* * * *
1373497 ACTCAAGACAACGCAAGTTCAACTTCACAATGAAGGGACCACTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
* * *
1373562 AATTTCAGAGCCAATTTCAACTTCTCAGCGAAGGATCTTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * * * *
1373603 AC-CCAAGACAACACAAGCTCAACTTCACGACGAAAGGG-CGGCTGATTGTTAA-CAA-AA-TT-
1 ACTCC-AGACAACGCAAGTTCAACTTCACGACG-AAGGGACCGCTGGTTGTCAATAAACAACTTC
* * * *
1373662 TC-A-TCCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
64 CCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * * * *
1373703 ACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTTTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
** * * * *
1373768 GGTTCCAGAGCCAATTTCAACTTCACGACGGAGGATATTAG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
1373809 ACTC
1 ACTC
1373813 AGAATAATGC
Statistics
Matches: 1233, Mismatches: 128, Indels: 27
0.89 0.09 0.02
Matches are distributed among these distances:
99 5 0.00
100 72 0.06
101 4 0.00
102 3 0.00
103 4 0.00
104 3 0.00
105 149 0.12
106 987 0.80
107 6 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
Found at i:1374597 original size:37 final size:37
Alignment explanation
Indices: 1374544--1374648 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
1374534 CTTTTTCGTC
*
1374544 CTACTAGGATTCAAACTCATAAAAATAGGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * * *
1374581 TTGCTAGGATTCAAACTCCTAAAAAAAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
1374618 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
1374649 CCACAAGCAC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:1375351 original size:12 final size:11
Alignment explanation
Indices: 1375329--1375369 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
1375319 TCTTTCTTTT
1375329 TATTATTCTTG
1 TATTATTCTTG
1375340 TATTATTACTTG
1 TATTATT-CTTG
* *
1375352 TATTATTTTTA
1 TATTATTCTTG
1375363 TATTATT
1 TATTATT
1375370 TATTTTGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 16 0.59
12 11 0.41
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.66
Consensus pattern (11 bp):
TATTATTCTTG
Found at i:1375994 original size:27 final size:27
Alignment explanation
Indices: 1375931--1375994 Score: 64
Period size: 27 Copynumber: 2.4 Consensus size: 27
1375921 ATTTATTTTC
1375931 TTTT-TCTTT-TTCTTTTTTATATATA
1 TTTTATCTTTGTTCTTTTTTATATATA
*
1375956 TTTTATTATTTGTT-TTTTTTACT-TACTA
1 TTTTA-TCTTTGTTCTTTTTTA-TATA-TA
1375984 TTTTATCTTTG
1 TTTTATCTTTG
1375995 CTTTCTTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
25 4 0.12
27 18 0.56
28 10 0.31
ACGTcount: A:0.16, C:0.08, G:0.03, T:0.73
Consensus pattern (27 bp):
TTTTATCTTTGTTCTTTTTTATATATA
Found at i:1385354 original size:38 final size:38
Alignment explanation
Indices: 1385303--1385441 Score: 183
Period size: 38 Copynumber: 3.7 Consensus size: 38
1385293 GTTAAGGGCG
*
1385303 AAACTATATATTATACATTTTCAAAAACCGTCTTTTAA
1 AAACTATATATTATATATTTTCAAAAACCGTCTTTTAA
* *
1385341 AAACTATGTATTATATGTTTTCAAAAACCGTCTTTTAA
1 AAACTATATATTATATATTTTCAAAAACCGTCTTTTAA
* * * * *
1385379 AAGCTATATATTATATGTTTTC-AAAACCAT-TTCTAT
1 AAACTATATATTATATATTTTCAAAAACCGTCTTTTAA
*
1385415 AAATTATATATTATATATTTTCAAAAA
1 AAACTATATATTATATATTTTCAAAAA
1385442 ATATTTTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
36 23 0.26
37 11 0.12
38 55 0.62
ACGTcount: A:0.41, C:0.12, G:0.04, T:0.42
Consensus pattern (38 bp):
AAACTATATATTATATATTTTCAAAAACCGTCTTTTAA
Found at i:1385467 original size:22 final size:21
Alignment explanation
Indices: 1385442--1385486 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
1385432 TTTTCAAAAA
* *
1385442 ATATTTTCGAAAACTATACTAT
1 ATATCTTCAAAAACTATA-TAT
1385464 ATATCTTCAAAAACTATATAT
1 ATATCTTCAAAAACTATATAT
1385485 AT
1 AT
1385487 TGTATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.44, C:0.13, G:0.02, T:0.40
Consensus pattern (21 bp):
ATATCTTCAAAAACTATATAT
Found at i:1397947 original size:22 final size:22
Alignment explanation
Indices: 1397912--1397982 Score: 76
Period size: 22 Copynumber: 3.3 Consensus size: 22
1397902 TAAATTTATG
*
1397912 AACCCT-AAACCTTAAAT-ACTA
1 AACCCTAAAATCTTAAATCA-TA
*
1397933 ACCCCTAAAATCTTAAATCATA
1 AACCCTAAAATCTTAAATCATA
* *
1397955 AACCCTAAAATC-TAAACCCTA
1 AACCCTAAAATCTTAAATCATA
1397976 AACCCTA
1 AACCCTA
1397983 TCACATAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
21 19 0.44
22 23 0.53
23 1 0.02
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (22 bp):
AACCCTAAAATCTTAAATCATA
Found at i:1397970 original size:14 final size:15
Alignment explanation
Indices: 1397947--1397977 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
1397937 CTAAAATCTT
1397947 AAATCATAAACCCTA
1 AAATCATAAACCCTA
1397962 AAATC-TAAACCCTA
1 AAATCATAAACCCTA
1397976 AA
1 AA
1397978 CCCTATCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
AAATCATAAACCCTA
Found at i:1398423 original size:5 final size:5
Alignment explanation
Indices: 1398413--1398445 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
1398403 TCATACTTTT
1398413 ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC ATT
1 ATTAC ATTAC ATTAC ATTAC ATTAC ATTAC ATT
1398446 TATTGTCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.39, C:0.18, G:0.00, T:0.42
Consensus pattern (5 bp):
ATTAC
Found at i:1398942 original size:11 final size:11
Alignment explanation
Indices: 1398926--1398988 Score: 51
Period size: 11 Copynumber: 5.9 Consensus size: 11
1398916 GTATTATAGA
1398926 ATTTTTAATAT
1 ATTTTTAATAT
1398937 ATTTTTAA-A-
1 ATTTTTAATAT
*
1398946 ATTTTATACT-T
1 ATTTT-TAATAT
*** *
1398957 ATCAATAATGT
1 ATTTTTAATAT
1398968 ATTTTTAATAT
1 ATTTTTAATAT
1398979 ATTTTTAATA
1 ATTTTTAATA
1398989 ATGTAATTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
9 5 0.13
10 6 0.15
11 28 0.72
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (11 bp):
ATTTTTAATAT
Found at i:1403880 original size:22 final size:21
Alignment explanation
Indices: 1403854--1403911 Score: 68
Period size: 19 Copynumber: 2.8 Consensus size: 21
1403844 TACCACCTGA
1403854 GGGGTATCGGTACCATTGCAT-G
1 GGGGTATCGGTACCATT--ATGG
*
1403876 GGGGTATCGATACC--TATGG
1 GGGGTATCGGTACCATTATGG
1403895 GGGGTATCGGTACCATT
1 GGGGTATCGGTACCATT
1403912 CGAACATTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
18 2 0.06
19 14 0.45
20 1 0.03
21 1 0.03
22 13 0.42
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (21 bp):
GGGGTATCGGTACCATTATGG
Found at i:1404322 original size:14 final size:14
Alignment explanation
Indices: 1404300--1404333 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
1404290 ATCATTTTTG
*
1404300 AAATCAAGTTTGAA
1 AAATTAAGTTTGAA
*
1404314 AAATTAAGTTTTAA
1 AAATTAAGTTTGAA
1404328 AAATTA
1 AAATTA
1404334 CTCCCCCTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.53, C:0.03, G:0.09, T:0.35
Consensus pattern (14 bp):
AAATTAAGTTTGAA
Found at i:1406678 original size:23 final size:22
Alignment explanation
Indices: 1406650--1406729 Score: 101
Period size: 23 Copynumber: 3.6 Consensus size: 22
1406640 TACCATCAGG
*
1406650 GGGGTATCGATACCCATTCAAA
1 GGGGTATCGATACCTATTCAAA
*
1406672 GATGGTATCGATACCTATTGC--A
1 G-GGGTATCGATACCTATT-CAAA
1406694 GGGGTATCGATACCTATTCAAA
1 GGGGTATCGATACCTATTCAAA
1406716 GGGGGTATCGATAC
1 -GGGGTATCGATAC
1406730 TATATGCTCA
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
20 1 0.02
21 16 0.32
22 4 0.08
23 28 0.56
24 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (22 bp):
GGGGTATCGATACCTATTCAAA
Found at i:1406701 original size:21 final size:22
Alignment explanation
Indices: 1406631--1406729 Score: 98
Period size: 23 Copynumber: 4.5 Consensus size: 22
1406621 ACCCCGTTGA
* *
1406631 GGGTATCGGTACC-A-TCAGGG
1 GGGTATCGATACCTATTCAAGG
* *
1406651 GGGTATCGATACCCATTCAAAGA
1 GGGTATCGATACCTATTC-AAGG
*
1406674 TGGTATCGATACCTATTGC-A-G
1 GGGTATCGATACCTATT-CAAGG
1406695 GGGTATCGATACCTATTCAAAGG
1 GGGTATCGATACCTATTC-AAGG
1406718 GGGTATCGATAC
1 GGGTATCGATAC
1406730 TATATGCTCA
Statistics
Matches: 65, Mismatches: 7, Indels: 11
0.78 0.08 0.13
Matches are distributed among these distances:
20 13 0.20
21 17 0.26
22 4 0.06
23 30 0.46
24 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (22 bp):
GGGTATCGATACCTATTCAAGG
Found at i:1415235 original size:64 final size:66
Alignment explanation
Indices: 1415076--1415236 Score: 204
Period size: 65 Copynumber: 2.5 Consensus size: 66
1415066 GGAATAAATC
* * * * *
1415076 AAACATCAAATGCATTTCATACACCGATGCA-CATACTATGCATCGATGCACTCAAAGTTTTATG
1 AAACATCGAATGCATTTCATGCATCGATGCACCATACCATGCATCGATGCACTCAAACTTTTATG
1415140 A
66 A
* * *
1415141 AAACATCGAATGCATTTGATGCATCGATGCACCA-GCCATGCATCGATGCACTCAGACTATTT-T
1 AAACATCGAATGCATTTCATGCATCGATGCACCATACCATGCATCGATGCACTCAAACT-TTTAT
1415204 G-
65 GA
*
1415205 AAACATCGAATGCATTTTATGCATCGATGCAC
1 AAACATCGAATGCATTTCATGCATCGATGCAC
1415237 TCTTAGTGCA
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
64 31 0.36
65 49 0.58
66 5 0.06
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.27
Consensus pattern (66 bp):
AAACATCGAATGCATTTCATGCATCGATGCACCATACCATGCATCGATGCACTCAAACTTTTATG
A
Found at i:1415252 original size:64 final size:64
Alignment explanation
Indices: 1415076--1415256 Score: 192
Period size: 65 Copynumber: 2.8 Consensus size: 64
1415066 GGAATAAATC
* * * *
1415076 AAACATCAAATGCATTTCATACACCGATGCACATACTA-TGCATCGATGCACTCAAAGTTTTATG
1 AAACATCGAATGCATTTCATGCATCGATGCAC-T-CTAGTGCATCGATGCACTCAAACTTTTATG
1415140 A
64 A
* *
1415141 AAACATCGAATGCATTTGATGCATCGATGCAC-C-AGCCATGCATCGATGCACTCAGACTATTT-
1 AAACATCGAATGCATTTCATGCATCGATGCACTCTAG---TGCATCGATGCACTCAAACT-TTTA
1415203 TG-
62 TGA
* *
1415205 AAACATCGAATGCATTTTATGCATCGATGCACTCTTAGTGCACCGATGCACT
1 AAACATCGAATGCATTTCATGCATCGATGCACTC-TAGTGCATCGATGCACT
1415257 AAGGGTCTAA
Statistics
Matches: 100, Mismatches: 8, Indels: 17
0.80 0.06 0.14
Matches are distributed among these distances:
61 1 0.01
62 1 0.01
64 44 0.44
65 49 0.49
66 3 0.03
67 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (64 bp):
AAACATCGAATGCATTTCATGCATCGATGCACTCTAGTGCATCGATGCACTCAAACTTTTATGA
Found at i:1421127 original size:23 final size:23
Alignment explanation
Indices: 1421056--1421134 Score: 81
Period size: 23 Copynumber: 3.5 Consensus size: 23
1421046 ACACTTAACA
*
1421056 GTGCATCGATGCATCGCTTTGAAT
1 GTGCATCGATGCA-CGCCTTGAAT
* * * *
1421080 TTGCATCGAT--ACACCATGAAG
1 GTGCATCGATGCACGCCTTGAAT
*
1421101 GTGCACCGATGCACGCCTTGAAT
1 GTGCATCGATGCACGCCTTGAAT
1421124 GTGCATCGATG
1 GTGCATCGATG
1421135 TACACTGCCA
Statistics
Matches: 42, Mismatches: 11, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
21 14 0.33
22 1 0.02
23 18 0.43
24 9 0.21
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (23 bp):
GTGCATCGATGCACGCCTTGAAT
Found at i:1423975 original size:45 final size:46
Alignment explanation
Indices: 1423879--1423986 Score: 168
Period size: 45 Copynumber: 2.4 Consensus size: 46
1423869 ATGCACATAC
1423879 TATGCATCGATGCACTCAGAGTTTTATGAAAACATCGAATGCATTT
1 TATGCATCGATGCACTCAGAGTTTTATGAAAACATCGAATGCATTT
*
1423925 GATGCATCGATGCACTCAG-GCTATTT-TG-AAACATCGAATGCATTT
1 TATGCATCGATGCACTCAGAG-T-TTTATGAAAACATCGAATGCATTT
1423970 TATGCATCGATGCACTC
1 TATGCATCGATGCACTC
1423987 TTAGTGCACT
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
45 34 0.59
46 21 0.36
47 3 0.05
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (46 bp):
TATGCATCGATGCACTCAGAGTTTTATGAAAACATCGAATGCATTT
Found at i:1425713 original size:18 final size:18
Alignment explanation
Indices: 1425648--1425710 Score: 99
Period size: 18 Copynumber: 3.5 Consensus size: 18
1425638 ACTTAGGATT
1425648 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
1425666 TGTCCAGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
1425684 TGTCCCGAATGACCACTA
1 TGTCCCGAAGGACCACTA
*
1425702 TGTCTCGAA
1 TGTCCCGAA
1425711 TGATCACTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:1425718 original size:18 final size:17
Alignment explanation
Indices: 1425652--1425718 Score: 80
Period size: 18 Copynumber: 3.8 Consensus size: 17
1425642 AGGATTTGTC
*
1425652 CCGAAGGACCACTATGT
1 CCGAATGACCACTATGT
*
1425669 CCAGAAGGACCACTATGT
1 CC-GAATGACCACTATGT
1425687 CCCGAATGACCACTATGT
1 -CCGAATGACCACTATGT
*
1425705 CTCGAATGATCACT
1 C-CGAATGACCACT
1425719 CCTTAAGAAC
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
17 3 0.07
18 40 0.89
19 2 0.04
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (17 bp):
CCGAATGACCACTATGT
Found at i:1428167 original size:14 final size:15
Alignment explanation
Indices: 1428141--1428194 Score: 92
Period size: 15 Copynumber: 3.7 Consensus size: 15
1428131 CAGACAACAG
1428141 CAACACAACAGGCAC
1 CAACACAACAGGCAC
1428156 CAACAC-ACAGGCAC
1 CAACACAACAGGCAC
*
1428170 CAACACAACAGGCAG
1 CAACACAACAGGCAC
1428185 CAACACAACA
1 CAACACAACA
1428195 ACCATCACCA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
14 14 0.38
15 23 0.62
ACGTcount: A:0.48, C:0.39, G:0.13, T:0.00
Consensus pattern (15 bp):
CAACACAACAGGCAC
Found at i:1428381 original size:40 final size:41
Alignment explanation
Indices: 1428326--1428417 Score: 116
Period size: 40 Copynumber: 2.3 Consensus size: 41
1428316 ACTTTAGTTA
* *
1428326 AACTTTATGTATTTTGTCAAATATTGAATGAAAA-TATGGT-
1 AACTTTATATATTTTGT-AAACATTGAATGAAAATTATGGTC
* * *
1428366 AACTTTATATATTTTGTTAACCTTGAATGAAAATTTTGGTC
1 AACTTTATATATTTTGTAAACATTGAATGAAAATTATGGTC
1428407 AACTTTATATA
1 AACTTTATATA
1428418 ACTGTAAATT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
39 13 0.29
40 21 0.47
41 11 0.24
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.45
Consensus pattern (41 bp):
AACTTTATATATTTTGTAAACATTGAATGAAAATTATGGTC
Found at i:1441309 original size:135 final size:132
Alignment explanation
Indices: 1441019--1442002 Score: 732
Period size: 133 Copynumber: 7.5 Consensus size: 132
1441009 TGATTCATTC
* * *
1441019 CACTATTCCTCAGGGAAGATTGAATCAAACTTGATTTGCTTCGCTGCTCTTTAGGGAGACCAAAT
1 CACTGTTCTTCAGGGAAGATTGAATCAAACTTGATTTGCTTCGCTGCTCTTTAGGAAGACCAAAT
* ** * * *
1441084 ATGAAAGAAGAAGCGTTTACTCCACTACTTTTAGGGGAGATCAAACTCGAGAAGTCTTTAATCCA
66 CTGAAAGAA-AAAAGTTTGCTCCACTACTTTTAGGGGAGATCAAACTCGAGAAATCTTTAATCTA
1441149 CTT
130 CTT
* * * ** *
1441152 GACTGCTCTTCAGGGAAGATTGAATTC-AACTTGATTTGCTTTGCTATTCTTCAGGAAGACCAAA
1 CACTGTTCTTCAGGGAAGATTGAA-TCAAACTTGATTTGCTTCGCTGCTCTTTAGGAAGACCAAA
* * * * * *
1441216 TCTGAAAGAAAAAAATGTATGCTCCCCTACTATTTAGAGGAGACCAGACTCGAGAAATTTTTAAT
65 TCTGAAAG-AAAAAA-GTTTGCTCCACTACT-TTTAGGGGAGATCAAACTCGAGAAATCTTTAAT
*
1441281 CTATTT
127 CTACTT
* * *
1441287 CACTGTTATTCAGGGAAGATTGAATCGAACCTGATTTGCTTCGCTGCTCTTTAGGAAGACCAAAT
1 CACTGTTCTTCAGGGAAGATTGAATCAAACTTGATTTGCTTCGCTGCTCTTTAGGAAGACCAAAT
* * ** * *
1441352 CTAAAAGAAAAGAGTTTGCTCTGCTACTCTTTAGGGGAGATCATACTCGAGAAAACTTTAATCTA
66 CTGAAAGAAAAAAGTTTGCTCCACTACT-TTTAGGGGAGATCAAACTCGAGAAATCTTTAATCTA
1441417 CTT
130 CTT
* ** * ** * *
1441420 CACTATTCTTCAGGGAAGATTGAATC-GTCTTCA---G----GAAGAC-C---A--AA-TCTAAA
1 CACTGTTCTTCAGGGAAGATTGAATCAAACTTGATTTGCTTCGCTG-CTCTTTAGGAAGACCAAA
* ** * * * * * *
1441470 --AGAAGA-A---GTGTATGCTCCCCTTCTTTATAGGGGAGATCAGACTCGATAAATCTTTGATC
65 TCTGAA-AGAAAAAAGTTTGCTCCACTACTTT-TAGGGGAGATCAAACTCGAGAAATCTTTAATC
1441529 TACTT
128 TACTT
* * * * * *
1441534 CACTGCTATTCAGGGAAGATTTAATCGAACTTGATTTGCTTCGCTGCT-TTCAAGAAGACCAAAT
1 CACTGTTCTTCAGGGAAGATTGAATCAAACTTGATTTGCTTCGCTGCTCTTTAGGAAGACCAAAT
* * * * * *
1441598 ATGAAAGAAGAAGAA-TCTGCTTCGCTACTCTTTAGGGGAGATCAGACTCGAGAAATCTTTGATC
66 CTGAAAGAA-AA-AAGTTTGCTCCACTACT-TTTAGGGGAGATCAAACTCGAGAAATCTTTAATC
*
1441662 CACTT
128 TACTT
* * * * *
1441667 CATTGTTCTTAAGGGAAGATTGAATCGAACTTGATTTGCTTCGTTGCT-TTTCAAGAAGACCAAA
1 CACTGTTCTTCAGGGAAGATTGAATCAAACTTGATTTGCTTCGCTGCTCTTT-AGGAAGACCAAA
* * * * * *
1441731 TCTAAAAG-AAGATGTGTGTGCTCC-CTACTCTTTAGAGGAGATGAGACTCGAGAAATCTTTAAT
65 TCTGAAAGAAAAAAGT-T-TGCTCCACTACT-TTTAGGGGAGATCAAACTCGAGAAATCTTTAAT
*
1441794 CCACTT
127 CTACTT
* * * * * *
1441800 CACTGCTATACAGGGAAGATTGAATCGAACTTGATTTGCTTCGGTGTTCTTTAGGAAGACCAAAT
1 CACTGTTCTTCAGGGAAGATTGAATCAAACTTGATTTGCTTCGCTGCTCTTTAGGAAGACCAAAT
* * * * *
1441865 CTGAAAGAAGAAGAA-TCTACTCCGCTACTCTTTAGGGGAGAT-AAGACTCAAGAAATCTTTGAT
66 CTGAAAGAA-AA-AAGTTTGCTCCACTACT-TTTAGGGGAGATCAA-ACTCGAGAAATCTTTAAT
*
1441928 CCACTT
127 CTACTT
* * * * ** * *
1441934 TATTGCTCTTTAGGGAAGATTGAATTGAACTTGATTTGCTTCGCTTCTC-TTAGGAATACCAAAT
1 CACTGTTCTTCAGGGAAGATTGAATCAAACTTGATTTGCTTCGCTGCTCTTTAGGAAGACCAAAT
*
1441998 ATGAA
66 CTGAA
1442003 GGATTGACTC
Statistics
Matches: 682, Mismatches: 127, Indels: 84
0.76 0.14 0.09
Matches are distributed among these distances:
113 2 0.00
114 67 0.10
115 4 0.01
117 3 0.00
118 2 0.00
119 4 0.01
120 2 0.00
121 1 0.00
122 3 0.00
124 1 0.00
125 3 0.00
126 3 0.00
127 4 0.01
128 1 0.00
129 5 0.01
131 1 0.00
132 5 0.01
133 345 0.51
134 131 0.19
135 94 0.14
136 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (132 bp):
CACTGTTCTTCAGGGAAGATTGAATCAAACTTGATTTGCTTCGCTGCTCTTTAGGAAGACCAAAT
CTGAAAGAAAAAAGTTTGCTCCACTACTTTTAGGGGAGATCAAACTCGAGAAATCTTTAATCTAC
TT
Found at i:1441546 original size:114 final size:113
Alignment explanation
Indices: 1441334--1441560 Score: 303
Period size: 114 Copynumber: 2.0 Consensus size: 113
1441324 GCTTCGCTGC
* * ** *
1441334 TCTTTAGGAAGACCAAATCTAAAAGAAAAGAGTTTGCTCTGCTACTCTTTAGGGGAGATCATACT
1 TCTTCAGGAAGACCAAATCTAAAAGAAAAGAGTATGCTCCCCTACTCTTTAGGGGAGATCAGACT
* *
1441399 CGAGAAAACTTTAATCTACTTCACTATTCTTCAGGGAAGATTGAATCG
66 CGAGAAAACTTTAATCTACTTCACTACTATTCAGGGAAGATTGAATCG
* *
1441447 TCTTCAGGAAGACCAAATCTAAAAGAAGAAGTGTATGCTCCCCTTCT-TTATAGGGGAGATCAGA
1 TCTTCAGGAAGACCAAATCTAAAAGAA-AAGAGTATGCTCCCCTACTCTT-TAGGGGAGATCAGA
* * * * *
1441511 CTCGATAAATCTTTGATCTACTTCACTGCTATTCAGGGAAGATTTAATCG
64 CTCGAGAAAACTTTAATCTACTTCACTACTATTCAGGGAAGATTGAATCG
1441561 AACTTGATTT
Statistics
Matches: 98, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
113 28 0.29
114 70 0.71
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (113 bp):
TCTTCAGGAAGACCAAATCTAAAAGAAAAGAGTATGCTCCCCTACTCTTTAGGGGAGATCAGACT
CGAGAAAACTTTAATCTACTTCACTACTATTCAGGGAAGATTGAATCG
Found at i:1441684 original size:247 final size:247
Alignment explanation
Indices: 1441198--1441958 Score: 884
Period size: 247 Copynumber: 3.0 Consensus size: 247
1441188 TGCTTTGCTA
* * * *
1441198 TTCTTCAGGAAGACCAAATCTGAAAGAAAAAAATGTATGCTCCCCTACTATTTAGAGGAGACCAG
1 TTCTTCAGGAAGACCAAATCTAAAAG-AAGAAGTGTATGCTCCCCTACTATTTAGAGGAGATCAG
* * * *
1441263 ACTCGAGAAATTTTTAATCTATTTCACTGTTATTCAGGGAAGATTGAATCGAACCTGATTTGCTT
65 ACTCGAGAAATCTTTAATCTACTTCACTGCTATTCAGGGAAGATTGAATCGAACTTGATTTGCTT
* * *
1441328 CGCTGCTCTTTAGGAAGACCAAATCTAAAAGAA-AAGAGTTTGC-TCTGCTACTCTTTAGGGGAG
130 CGCTG--CTTTAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTTC-GCTACTCTTTAGGGGAG
* * * * * * *
1441391 ATCATACTCGAGAAAACTTTAATCTACTTCACTATTCTTCAGGGAAGATTGAATCG
192 ATCAGACTCGAGAAATCTTTGATCCACTTCATTGTTCTTAAGGGAAGATTGAATCG
* *
1441447 -TCTTCAGGAAGACCAAATCTAAAAGAAGAAGTGTATGCTCCCCTTCT-TTATAGGGGAGATCAG
1 TTCTTCAGGAAGACCAAATCTAAAAGAAGAAGTGTATGCTCCCCTACTATT-TAGAGGAGATCAG
* * *
1441510 ACTCGATAAATCTTTGATCTACTTCACTGCTATTCAGGGAAGATTTAATCGAACTTGATTTGCTT
65 ACTCGAGAAATCTTTAATCTACTTCACTGCTATTCAGGGAAGATTGAATCGAACTTGATTTGCTT
* *
1441575 CGCTGCTTTCAAGAAGACCAAATATGAAAGAAGAAGAATCTGCTTCGCTACTCTTTAGGGGAGAT
130 CGCTGCTTT-AGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTTCGCTACTCTTTAGGGGAGAT
1441640 CAGACTCGAGAAATCTTTGATCCACTTCATTGTTCTTAAGGGAAGATTGAATCGAACTTGATTTG
194 CAGACTCGAGAAATCTTTGATCCACTTCATTGTTCTTAAGGGAAGA-T---T-G-A----A----
1441705 CTTCG
245 --TCG
* * * * *
1441710 TTGCTTTTCAAGAAGACCAAATCTAAAAGAAGATGTGTGTGCT-CCCTACTCTTTAGAGGAGATG
1 TT-C--TTCAGGAAGACCAAATCTAAAAGAAGAAGTGTATGCTCCCCTACTATTTAGAGGAGATC
* *
1441774 AGACTCGAGAAATCTTTAATCCACTTCACTGCTATACAGGGAAGATTGAATCGAACTTGATTTGC
63 AGACTCGAGAAATCTTTAATCTACTTCACTGCTATTCAGGGAAGATTGAATCGAACTTGATTTGC
* * *
1441839 TTCGGTGTTCTTTAGGAAGACCAAATCTGAAAGAAGAAGAATCTACTCCGCTACTCTTTAGGGGA
128 TTCGCTG--CTTTAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTTCGCTACTCTTTAGGGGA
* * * * *
1441904 GATAAGACTCAAGAAATCTTTGATCCACTTTATTGCTCTTTAGGGAAGATTGAAT
191 GATCAGACTCGAGAAATCTTTGATCCACTTCATTGTTCTTAAGGGAAGATTGAAT
1441959 TGAACTTGAT
Statistics
Matches: 439, Mismatches: 46, Indels: 52
0.82 0.09 0.10
Matches are distributed among these distances:
245 4 0.01
246 21 0.05
247 159 0.36
248 27 0.06
251 2 0.00
252 1 0.00
253 1 0.00
257 2 0.00
261 1 0.00
262 1 0.00
263 4 0.01
264 1 0.00
265 1 0.00
266 82 0.19
267 128 0.29
268 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (247 bp):
TTCTTCAGGAAGACCAAATCTAAAAGAAGAAGTGTATGCTCCCCTACTATTTAGAGGAGATCAGA
CTCGAGAAATCTTTAATCTACTTCACTGCTATTCAGGGAAGATTGAATCGAACTTGATTTGCTTC
GCTGCTTTAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTTCGCTACTCTTTAGGGGAGATCA
GACTCGAGAAATCTTTGATCCACTTCATTGTTCTTAAGGGAAGATTGAATCG
Found at i:1441782 original size:380 final size:380
Alignment explanation
Indices: 1441066--1441826 Score: 965
Period size: 380 Copynumber: 2.0 Consensus size: 380
1441056 GCTTCGCTGC
* * * *
1441066 TCTTTAGGGAGACCAAATATGAAAGAAGAAGCGTTTACTCCACTACTTTTAGGGGAGATCAAACT
1 TCTTCAGGAAGACCAAATATAAAAGAAGAAGCGTATACTCCACTACTTTTAGGGGAGATCAAACT
* * * *
1441131 CGAGAAGTCTTTAATCCACTTGACTGCTCTTCAGGGAAGATTGAATTCAACTTGATTTGCTTTGC
66 CGAGAAATCTTTAATCCACTTCACTGCTATTCAGGGAAGATTGAATTCAACTTGATTTGCTTCGC
* * *
1441196 TATTCTTCAGGAAGACCAAATCTGAAAGAAAAAAATGTATGCTCCCCTACTATTTAGAGGAGACC
131 TACTCTTCAAGAAGACCAAATATGAAAGAAAAAAA-GTATGCTCCCCTACTATTTAGAGGAGACC
* * * *
1441261 AGACTCGAGAAATTTTTAATCTATTTCACTGTTATTCAGGGAAGATTGAATCGAACCTGATTTGC
195 AGACTCGAGAAATCTTTAATCCACTTCACTGTTATTAAGGGAAGATTGAATCGAACCTGATTTGC
* * * *
1441326 TTCGCTGCTCTTTAGGAAGACCAAATCTAAAAGAAAAGAGTTTGCTCTGCTACTCTTTAGGGGAG
260 TTCGCTGCTCTTTAAGAAGACCAAATCTAAAAGAAAAGAGTGTGCTCTCCTACTCTTTAGAGGAG
* * * * *
1441391 ATCATACTCGAGAAAACTTTAATCTACTTCACTATTCTTCAGGGAAGATTGAATCG
325 ATCAGACTCGAGAAAACTTTAATCCACTTCACTACTATACAGGGAAGATTGAATCG
* * * * * *
1441447 TCTTCAGGAAGACCAAATCTAAAAGAAGAAGTGTATGCTCCCCTTCTTTATAGGGGAGATCAGAC
1 TCTTCAGGAAGACCAAATATAAAAGAAGAAGCGTATACTCCACTACTTT-TAGGGGAGATCAAAC
* * * *
1441512 TCGATAAATCTTTGATCTACTTCACTGCTATTCAGGGAAGATTTAA-TCGAACTTGATTTGCTTC
65 TCGAGAAATCTTTAATCCACTTCACTGCTATTCAGGGAAGATTGAATTC-AACTTGATTTGCTTC
* * * * * * *
1441576 GCTGCT-TTCAAGAAGACCAAATATGAAAGAAGAAGAA-TCTGCTTCGCTACTCTTTAGGGGAGA
129 GCTACTCTTCAAGAAGACCAAATATGAAAGAA-AAAAAGTATGCTCCCCTACTATTTAGAGGAGA
* * * * *
1441639 TCAGACTCGAGAAATCTTTGATCCACTTCATTGTTCTTAAGGGAAGATTGAATCGAACTTGATTT
193 CCAGACTCGAGAAATCTTTAATCCACTTCACTGTTATTAAGGGAAGATTGAATCGAACCTGATTT
* * *
1441704 GCTTCGTTGCT-TTTCAAGAAGACCAAATCTAAAAGAAGATGTGTGTGCTC-CCTACTCTTTAGA
258 GCTTCGCTGCTCTTT-AAGAAGACCAAATCTAAAAGAA-AAGAGTGTGCTCTCCTACTCTTTAGA
* * *
1441767 GGAGATGAGACTCGAGAAATCTTTAATCCACTTCACTGCTATACAGGGAAGATTGAATCG
321 GGAGATCAGACTCGAGAAAACTTTAATCCACTTCACTACTATACAGGGAAGATTGAATCG
1441827 AACTTGATTT
Statistics
Matches: 323, Mismatches: 52, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
379 3 0.01
380 171 0.53
381 74 0.23
382 75 0.23
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.30
Consensus pattern (380 bp):
TCTTCAGGAAGACCAAATATAAAAGAAGAAGCGTATACTCCACTACTTTTAGGGGAGATCAAACT
CGAGAAATCTTTAATCCACTTCACTGCTATTCAGGGAAGATTGAATTCAACTTGATTTGCTTCGC
TACTCTTCAAGAAGACCAAATATGAAAGAAAAAAAGTATGCTCCCCTACTATTTAGAGGAGACCA
GACTCGAGAAATCTTTAATCCACTTCACTGTTATTAAGGGAAGATTGAATCGAACCTGATTTGCT
TCGCTGCTCTTTAAGAAGACCAAATCTAAAAGAAAAGAGTGTGCTCTCCTACTCTTTAGAGGAGA
TCAGACTCGAGAAAACTTTAATCCACTTCACTACTATACAGGGAAGATTGAATCG
Found at i:1441929 original size:267 final size:267
Alignment explanation
Indices: 1441449--1441976 Score: 810
Period size: 267 Copynumber: 2.0 Consensus size: 267
1441439 TTGAATCGTC
* * *
1441449 TTCAGGAAGACCAAATCTAAAAGAAGAAGTGTATGCTCCCCTTCTTTATAGGGGAGATCAGACTC
1 TTCAAGAAGACCAAATCTAAAAGAAGAAGTGTATGCTCCCCTACTTTATAGAGGAGATCAGACTC
* * * * *
1441514 GATAAATCTTTGATCTACTTCACTGCTATTCAGGGAAGATTTAATCGAACTTGATTTGCTTCGCT
66 GAGAAATCTTTAATCCACTTCACTGCTATACAGGGAAGATTGAATCGAACTTGATTTGCTTCGCT
* * *
1441579 GCTTTCAAGAAGACCAAATATGAAAGAAGAAGAATCTGCTTCGCTACTCTTTAGGGGAGATCAGA
131 GCTTTCAAGAAGACCAAATATGAAAGAAGAAGAATCTACTCCGCTACTCTTTAGGGGAGATAAGA
* *
1441644 CTCGAGAAATCTTTGATCCACTTCATTGTTCTTAAGGGAAGATTGAATCGAACTTGATTTGCTTC
196 CTCAAGAAATCTTTGATCCACTTCATTGCTCTTAAGGGAAGATTGAATCGAACTTGATTTGCTTC
1441709 GTTGCTT
261 GTTGCTT
* * *
1441716 TTCAAGAAGACCAAATCTAAAAGAAGATGTGTGTGCT-CCCTACTCTT-TAGAGGAGATGAGACT
1 TTCAAGAAGACCAAATCTAAAAGAAGAAGTGTATGCTCCCCTACT-TTATAGAGGAGATCAGACT
*
1441779 CGAGAAATCTTTAATCCACTTCACTGCTATACAGGGAAGATTGAATCGAACTTGATTTGCTTCGG
65 CGAGAAATCTTTAATCCACTTCACTGCTATACAGGGAAGATTGAATCGAACTTGATTTGCTTCGC
* *
1441844 TGTTCTTT-AGGAAGACCAAATCTGAAAGAAGAAGAATCTACTCCGCTACTCTTTAGGGGAGATA
130 TG--CTTTCAAGAAGACCAAATATGAAAGAAGAAGAATCTACTCCGCTACTCTTTAGGGGAGATA
* * *
1441908 AGACTCAAGAAATCTTTGATCCACTTTATTGCTCTTTAGGGAAGATTGAATTGAACTTGATTTGC
193 AGACTCAAGAAATCTTTGATCCACTTCATTGCTCTTAAGGGAAGATTGAATCGAACTTGATTTGC
1441973 TTCG
258 TTCG
1441977 CTTCTCTTAG
Statistics
Matches: 236, Mismatches: 22, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
266 81 0.34
267 151 0.64
268 4 0.02
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (267 bp):
TTCAAGAAGACCAAATCTAAAAGAAGAAGTGTATGCTCCCCTACTTTATAGAGGAGATCAGACTC
GAGAAATCTTTAATCCACTTCACTGCTATACAGGGAAGATTGAATCGAACTTGATTTGCTTCGCT
GCTTTCAAGAAGACCAAATATGAAAGAAGAAGAATCTACTCCGCTACTCTTTAGGGGAGATAAGA
CTCAAGAAATCTTTGATCCACTTCATTGCTCTTAAGGGAAGATTGAATCGAACTTGATTTGCTTC
GTTGCTT
Found at i:1442593 original size:76 final size:76
Alignment explanation
Indices: 1442081--1442602 Score: 432
Period size: 76 Copynumber: 6.9 Consensus size: 76
1442071 AAGTCAATGA
* * *
1442081 TGACTTATCTTTATGAGAAAGTCAAGAATAACATTGAAAGATTGACTTCTCTTCGTGA-GAGAGT
1 TGACTTCTCTTCATGAGAAAGTCAAGAATAAC----AAAGATTGACTTCTCTTCGCGAGGA-AGT
* *
1442145 AAAAAATAACAAAGAT
61 CAAGAATAACAAAGAT
* * * * * * *
1442161 TGACTTCTCTTCATGAGGAAGTCAAGAATAACAAAGATTTACTCCTATTCGCAAGGGAGTCAGGA
1 TGACTTCTCTTCATGAGAAAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGGAAGTCAAGA
*
1442226 ATAACAAATAT
66 ATAACAAAGAT
* * * * * * *
1442237 TGATTTCTCTT-TTGGATAAAGTCAAGAATAACAAAGATTGA-TTCCTTTTCGTGAGGGAGTCAG
1 TGACTTCTCTTCAT-GAGAAAGTCAAGAATAACAAAGATTGACTT-CTCTTCGCGAGGAAGTCAA
*
1442300 GAATAAAAAAGAT
64 GAATAACAAAGAT
* * * * *
1442313 TAACTTCTTTTCATGAGTAAGTCAAGAATAA-AAAGATTGAC-TCT-TTTGCGAGGTAA-TCATG
1 TGACTTCTCTTCATGAGAAAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGG-AAGTCAAG
1442374 -ATAACAAAGAT
65 AATAACAAAGAT
* * *** ** * * * * *
1442385 TGACTCCTTTTTGCGAGGTAGTCATGATTAACAAAGATTGACTTCTCTTCACAAGGGAGTC-AGA
1 TGACTTCTCTTCATGAGAAAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGGAAGTCAAGA
*
1442449 ATAACAAACAT
66 ATAACAAAGAT
* * * * * ***
1442460 TGACTTCTCTTAATGAGTAAGTCAAGAGTAACAAAAATTAACTTCTCTTCATAAGGAAGTCAAGA
1 TGACTTCTCTTCATGAGAAAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGGAAGTCAAGA
*
1442525 GTAACAAAGAT
66 ATAACAAAGAT
* * * * *
1442536 TGACTTCGCTTCACGAGAAAGTCAAGAATAACAAAGATCGACTTCTCTTTGCGAGGAAGTTAAGA
1 TGACTTCTCTTCATGAGAAAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGGAAGTCAAGA
1442601 AT
66 AT
1442603 GACATTGGAA
Statistics
Matches: 351, Mismatches: 79, Indels: 28
0.77 0.17 0.06
Matches are distributed among these distances:
72 32 0.09
73 21 0.06
74 8 0.02
75 78 0.22
76 181 0.52
77 2 0.01
80 29 0.08
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (76 bp):
TGACTTCTCTTCATGAGAAAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGGAAGTCAAGA
ATAACAAAGAT
Found at i:1442601 original size:38 final size:38
Alignment explanation
Indices: 1442099--1442602 Score: 378
Period size: 38 Copynumber: 13.3 Consensus size: 38
1442089 CTTTATGAGA
*
1442099 AAGTCAAGAATAACATTGAAAGATTGACTTCTCTTCGTGA-G
1 AAGTCAAGAATAAC----AAAGATTGACTTCTCTTCGCGAGG
* * **
1442140 AGAGTAAAAAATAACAAAGATTGACTTCTCTTCATGAGG
1 A-AGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGG
* * * *
1442179 AAGTCAAGAATAACAAAGATTTACTCCTATTCGCAAGG
1 AAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGG
* * * * * **
1442217 GAGTCAGGAATAACAAATATTGATTTCTCTTTTG-GATA
1 AAGTCAAGAATAACAAAGATTGACTTCTC-TTCGCGAGG
* *
1442255 AAGTCAAGAATAACAAAGATTGA-TTCCTTTTCGTGAGG
1 AAGTCAAGAATAACAAAGATTGACTT-CTCTTCGCGAGG
* * * * * ** *
1442293 GAGTCAGGAATAAAAAAGATTAACTTCTTTTCATGAGT
1 AAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGG
*
1442331 AAGTCAAGAATAA-AAAGATTGAC-TCT-TTTGCGAGG
1 AAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGG
* * * *
1442366 TAA-TCATG-ATAACAAAGATTGACTCCTTTTTGCGAGG
1 -AAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGG
* * * * *
1442403 TAGTCATGATTAACAAAGATTGACTTCTCTTCACAAGG
1 AAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGG
* * *** *
1442441 GAGTC-AGAATAACAAACATTGACTTCTCTTAATGAGT
1 AAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGG
* * * ***
1442478 AAGTCAAGAGTAACAAAAATTAACTTCTCTTCATAAGG
1 AAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGG
* * * *
1442516 AAGTCAAGAGTAACAAAGATTGACTTCGCTTCACGAGA
1 AAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGG
* *
1442554 AAGTCAAGAATAACAAAGATCGACTTCTCTTTGCGAGG
1 AAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGG
*
1442592 AAGTTAAGAAT
1 AAGTCAAGAAT
1442603 GACATTGGAA
Statistics
Matches: 371, Mismatches: 79, Indels: 29
0.77 0.16 0.06
Matches are distributed among these distances:
34 4 0.01
35 19 0.05
36 8 0.02
37 57 0.15
38 264 0.71
39 7 0.02
41 1 0.00
42 11 0.03
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (38 bp):
AAGTCAAGAATAACAAAGATTGACTTCTCTTCGCGAGG
Found at i:1443869 original size:42 final size:44
Alignment explanation
Indices: 1443792--1443922 Score: 149
Period size: 42 Copynumber: 3.0 Consensus size: 44
1443782 GTATTCTCGA
* * * * *
1443792 ATGATATTGACCTTCAAAAAATGTCCCAATATTTATTATTTCTTG
1 ATGATATGGCCCTTC-AAAAGTGCCCCAACATTTATTATTTCTTG
* * * *
1443837 TTGATATGGGCCTTTAAAA-TGCCCC-ACATTTATTATTTCTAG
1 ATGATATGGCCCTTCAAAAGTGCCCCAACATTTATTATTTCTTG
*
1443879 ATGATATGGCCCTTCAAAAGTGCCCCAACATTTATTACTTCTTG
1 ATGATATGGCCCTTCAAAAGTGCCCCAACATTTATTATTTCTTG
1443923 CTTCAGCACT
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
42 31 0.43
43 11 0.15
44 19 0.26
45 11 0.15
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (44 bp):
ATGATATGGCCCTTCAAAAGTGCCCCAACATTTATTATTTCTTG
Found at i:1444068 original size:12 final size:12
Alignment explanation
Indices: 1444039--1444068 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
1444029 TTTTATTTTC
1444039 AAATTTTGAAAA
1 AAATTTTGAAAA
1444051 AGAATTTTGAAAA
1 A-AATTTTGAAAA
1444064 AAATT
1 AAATT
1444069 CAAAATCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (12 bp):
AAATTTTGAAAA
Found at i:1448704 original size:14 final size:14
Alignment explanation
Indices: 1448677--1448720 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
1448667 TTAAAAAAAT
*
1448677 AAATAAAAATATAA
1 AAATAAAAAGATAA
*
1448691 AAATAAAAGGATAA
1 AAATAAAAAGATAA
*
1448705 ATAAGAAAAAGATAA
1 A-AATAAAAAGATAA
1448720 A
1 A
1448721 TAGGAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.75, C:0.00, G:0.09, T:0.16
Consensus pattern (14 bp):
AAATAAAAAGATAA
Found at i:1448718 original size:15 final size:15
Alignment explanation
Indices: 1448681--1448722 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
1448671 AAAAATAAAT
* *
1448681 AAAAATATAAA-AAT
1 AAAAAGATAAATAAG
*
1448695 AAAAGGATAAATAAG
1 AAAAAGATAAATAAG
1448710 AAAAAGATAAATA
1 AAAAAGATAAATA
1448723 GGAGGTTTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.17
Consensus pattern (15 bp):
AAAAAGATAAATAAG
Found at i:1448776 original size:11 final size:11
Alignment explanation
Indices: 1448762--1448803 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
1448752 AGATAAAGGC
1448762 AAATAATAATA
1 AAATAATAATA
1448773 AAATAATAATA
1 AAATAATAATA
1448784 AAAT-ATAATA
1 AAATAATAATA
*
1448794 AAATAGTAAT
1 AAATAATAAT
1448804 TATAGTTTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
10 10 0.34
11 19 0.66
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (11 bp):
AAATAATAATA
Found at i:1448791 original size:21 final size:22
Alignment explanation
Indices: 1448762--1448803 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
1448752 AGATAAAGGC
1448762 AAATAATAATAAAATAATAATA
1 AAATAATAATAAAATAATAATA
*
1448784 AAAT-ATAATAAAATAGTAAT
1 AAATAATAATAAAATAATAAT
1448804 TATAGTTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (22 bp):
AAATAATAATAAAATAATAATA
Found at i:1450187 original size:121 final size:119
Alignment explanation
Indices: 1450044--1450274 Score: 304
Period size: 121 Copynumber: 1.9 Consensus size: 119
1450034 TATGGAAAAT
* * *
1450044 ATTAATATATATATTTATAAATAAAATATTTATTTATTTAGAAATATCAGAAAA-GGACTTCTAG
1 ATTAATATATATATTTATAAATAAAATATTTATTTATTTAAAAATATCAGAAAATGGACATCCAG
* *
1450108 GTGCCTTTAAGACAGCTCTTTTCCTTGATATTAAAAAATAAATAAATAATTAAAACA
66 GTG-CTTTAAGACAGC-CCTTT-CTTAATATTAAAAAATAAATAAATAATTAAAACA
* * *
1450165 ATTAATGTATA-ATTTATAAAATAAGATATTTATTTATTTAAAAATATCAGAAAATTGACATCCA
1 ATTAATATATATATTTAT-AAATAAAATATTTATTTATTTAAAAATATCAGAAAATGGACATCCA
* * * *
1450229 GTTGTTTTAAGACTGCCCTTTCTTAATATTGAAAAATAAATAAATA
65 GGTGCTTTAAGACAGCCCTTTCTTAATATTAAAAAATAAATAAATA
1450275 TATATTAAAA
Statistics
Matches: 96, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
119 23 0.24
120 10 0.10
121 54 0.56
122 9 0.09
ACGTcount: A:0.45, C:0.09, G:0.08, T:0.38
Consensus pattern (119 bp):
ATTAATATATATATTTATAAATAAAATATTTATTTATTTAAAAATATCAGAAAATGGACATCCAG
GTGCTTTAAGACAGCCCTTTCTTAATATTAAAAAATAAATAAATAATTAAAACA
Found at i:1450385 original size:16 final size:14
Alignment explanation
Indices: 1450369--1450411 Score: 61
Period size: 13 Copynumber: 3.1 Consensus size: 14
1450359 TATTTATATA
1450369 AATAATAAGAATAAT
1 AATAATAA-AATAAT
*
1450384 AATAA-AAAGTAAT
1 AATAATAAAATAAT
1450397 AATAATAAAATAAT
1 AATAATAAAATAAT
1450411 A
1 A
1450412 TTGCAAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 10 0.40
14 10 0.40
15 5 0.20
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (14 bp):
AATAATAAAATAAT
Found at i:1450425 original size:3 final size:3
Alignment explanation
Indices: 1450369--1450411 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
1450359 TATTTATATA
* *
1450369 AAT AAT AAG AAT AAT AAT AAA AAGT AAT AAT AAT AA- AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT A
1450412 TTGCAAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.88
4 2 0.06
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:1450431 original size:12 final size:12
Alignment explanation
Indices: 1450369--1450433 Score: 53
Period size: 12 Copynumber: 5.2 Consensus size: 12
1450359 TATTTATATA
1450369 AATAA-TAAGAAT
1 AATAATTAA-AAT
*
1450381 AATAATAAAAAGT
1 AATAATTAAAA-T
1450394 AATAATAATAAAAT
1 AATAAT--TAAAAT
*
1450408 AAT-ATTGCAAAT
1 AATAATT-AAAAT
1450420 AATAATTAAAAT
1 AATAATTAAAAT
1450432 AA
1 AA
1450434 AAGGAATTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 1 0.02
12 20 0.47
13 14 0.33
14 4 0.09
15 4 0.09
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.28
Consensus pattern (12 bp):
AATAATTAAAAT
Found at i:1451726 original size:3 final size:3
Alignment explanation
Indices: 1451718--1451795 Score: 58
Period size: 3 Copynumber: 27.0 Consensus size: 3
1451708 GGCCTGTTTG
* * *
1451718 TAA TAA TAA TAA TTA T-T TAT TTAA TAA TAA TAA T-A TAA T-A TATA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TA-A
* *
1451762 TAA TAA TAA TAT TAA -AA CAA -AA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1451796 ATAAAACAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
2 9 0.14
3 49 0.78
4 5 0.08
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:1451804 original size:23 final size:23
Alignment explanation
Indices: 1451739--1451805 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
1451729 ATTATTTATT
* * *
1451739 TAATAATAATAATATAATA-TATA
1 TAATAATAATAA-ATAAAACAAAA
*
1451762 TAATAATAAT-ATTAAAACAAAA
1 TAATAATAATAAATAAAACAAAA
1451784 TAATAATAATAAATAAAACAAA
1 TAATAATAATAAATAAAACAAA
1451806 TGAAATAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 4 0.11
22 13 0.35
23 20 0.54
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (23 bp):
TAATAATAATAAATAAAACAAAA
Found at i:1452516 original size:113 final size:113
Alignment explanation
Indices: 1452065--1453492 Score: 2120
Period size: 113 Copynumber: 12.6 Consensus size: 113
1452055 AGAATCATGC
* *
1452065 AAAAGATTGAACAAGTTCTTCTCATTATGAACTTCCTCTTCC-TCTTCAGATGAATTCTTCTCAT
1 AAAAG-TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * * *
1452129 TATGAACT--ATCTCTGGAAAAGTTGATCCATCGAGTGATGAATTCGAGCG
65 TATGAACTCGA-C-CTGGCAATGCTGATCCATCGAATGATGAATTCAAGCG
*
1452178 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTTATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
1452243 ATGAACTCGCCCTGGCAATGCTGGT-CATCGAATGATAAATTCAAGCG
66 ATGAACTCGACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCG
* *
1452290 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTT-CTTCTTCAGATAAGTTCTTCTTATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
1452354 ATGAACTCGCCCTGGCAATGCTGGTCCATCGAATGATAAATTCAAGCG
66 ATGAACTCGACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCG
1452402 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* *
1452467 ATGAACTCGACCTGGTAATGATGATCCATCGAATGATGAATTCAAGCG
66 ATGAACTCGACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCG
*
1452515 AAAAGTTGAACAAGTTCTTCTCATTTTGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
1452580 ATGAACTCGACCTGGCAATGTTGATCCATCGAATGATGAATTCAAGCG
66 ATGAACTCGACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCG
*
1452628 AAAATTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
1452693 ATGAACTCGACCTGGCAATGTTGATCCATCGAATGATGAATTCAAGCG
66 ATGAACTCGACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCG
*
1452741 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTTAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* *
1452806 ATGAACTCGACCTGGTAATGATGATCCATCGAATGATGAATTCAAGCG
66 ATGAACTCGACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCG
*
1452854 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTTAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
1452919 ATGAACTCGACCTGGTAATGATGATCCATCGAATGATGAATTCAAGCA
66 ATGAACTCGACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCG
1452967 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
*
1453032 ATGAACTCAACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCG
66 ATGAACTCGACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCG
*
1453080 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTTAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
** * * *
1453145 ATGAACTCTTTCACTGAG-GATGCTGATCCATCAAATGATGAATTCAAAC-
66 ATGAACTC-GAC-CTG-GCAATGCTGATCCATCGAATGATGAATTCAAGCG
* *
1453194 AAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
**** * * ** * **
1453259 TATGAACTTTTTTCTGGAAAAGCTGATCCATTAAATGATGGATTTGAGC-
65 TATGAAC-TCGACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCG
* *
1453308 AAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
**** * * * * **
1453373 TATGAACTTTTTCTGGAAAAGCTGAT-CATCAAATGATGGATTTGAGC-
65 TATGAACTCGACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCG
* * *
1453420 AAAAGGTTGAACAAATTCGTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1453485 TATGAACT
65 TATGAACT
1453493 TTTTCTGGAA
Statistics
Matches: 1250, Mismatches: 54, Indels: 23
0.94 0.04 0.02
Matches are distributed among these distances:
111 49 0.04
112 246 0.20
113 751 0.60
114 105 0.08
115 97 0.08
116 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (113 bp):
AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTCGACCTGGCAATGCTGATCCATCGAATGATGAATTCAAGCG
Found at i:1454429 original size:50 final size:52
Alignment explanation
Indices: 1454307--1454531 Score: 133
Period size: 40 Copynumber: 4.6 Consensus size: 52
1454297 TTTTACAGCG
* * *
1454307 CATTCATCCTTTCCTGTGGCTTCTGCTCAGATGTTCGTAAAACATTTGACAACA
1 CATTCATCCTTTTCTGTGGCTTCAGCTCAGA--TTCGTAAAACACTTGACAACA
* * * * *
1454361 CATTC-TTCATCTCATGTGGTTTCAGCTCAGA-T-GTAAAACACTTGGCAACA
1 CATTCATCCTTTTC-TGTGGCTTCAGCTCAGATTCGTAAAACACTTGACAACA
1454411 CATTCATCCTTTTCTGT-G-----G----GA-T-GTAAAACACTTGACAACA
1 CATTCATCCTTTTCTGTGGCTTCAGCTCAGATTCGTAAAACACTTGACAACA
* * * * * * *
1454451 CATTCTTCATTTTTTGTGGCTTCTGATCAGATGTTCGTAAAGCATTTGAC-A-A
1 CATTCATCCTTTTCTGTGGCTTCAGCTCAGA--TTCGTAAAACACTTGACAACA
* *
1454503 TATTCATCCTTTTCTGTGGCTTCTGCTCA
1 CATTCATCCTTTTCTGTGGCTTCAGCTCA
1454532 AATTTCTCAA
Statistics
Matches: 133, Mismatches: 22, Indels: 34
0.70 0.12 0.18
Matches are distributed among these distances:
40 34 0.26
41 1 0.01
44 1 0.01
46 1 0.01
49 1 0.01
50 26 0.20
51 6 0.05
52 25 0.19
53 6 0.05
54 32 0.24
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (52 bp):
CATTCATCCTTTTCTGTGGCTTCAGCTCAGATTCGTAAAACACTTGACAACA
Found at i:1458991 original size:22 final size:22
Alignment explanation
Indices: 1458961--1459003 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
1458951 CTTGATTCAA
1458961 TTTTCCTTTTTCTTCTTCTTTT
1 TTTTCCTTTTTCTTCTTCTTTT
* *
1458983 TTTTTCTTTTTTTTCTTCTTT
1 TTTTCCTTTTTCTTCTTCTTT
1459004 CTTTGCTGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (22 bp):
TTTTCCTTTTTCTTCTTCTTTT
Found at i:1464590 original size:20 final size:19
Alignment explanation
Indices: 1464551--1464602 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
1464541 TTTCTTTGAT
1464551 ATTAAAAAATAAATAAATA
1 ATTAAAAAATAAATAAATA
* *
1464570 ATTAAAACAATTAATATATA
1 ATTAAAA-AATAAATAAATA
*
1464590 ATTTATAAAATAA
1 A-TTAAAAAATAA
1464603 GATATTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 7 0.26
20 15 0.56
21 5 0.19
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
ATTAAAAAATAAATAAATA
Found at i:1464799 original size:16 final size:14
Alignment explanation
Indices: 1464783--1464825 Score: 61
Period size: 13 Copynumber: 3.1 Consensus size: 14
1464773 TATTTATATA
1464783 AATAATAAGAATAAT
1 AATAATAA-AATAAT
*
1464798 AATAA-AAAGTAAT
1 AATAATAAAATAAT
1464811 AATAATAAAATAAT
1 AATAATAAAATAAT
1464825 A
1 A
1464826 TTGCAAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 10 0.40
14 10 0.40
15 5 0.20
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (14 bp):
AATAATAAAATAAT
Found at i:1464839 original size:3 final size:3
Alignment explanation
Indices: 1464783--1464825 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
1464773 TATTTATATA
* *
1464783 AAT AAT AAG AAT AAT AAT AAA AAGT AAT AAT AAT AA- AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT A
1464826 TTGCAAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.88
4 2 0.06
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:1464845 original size:12 final size:12
Alignment explanation
Indices: 1464783--1464847 Score: 53
Period size: 12 Copynumber: 5.2 Consensus size: 12
1464773 TATTTATATA
1464783 AATAA-TAAGAAT
1 AATAATTAA-AAT
*
1464795 AATAATAAAAAGT
1 AATAATTAAAA-T
1464808 AATAATAATAAAAT
1 AATAAT--TAAAAT
*
1464822 AAT-ATTGCAAAT
1 AATAATT-AAAAT
1464834 AATAATTAAAAT
1 AATAATTAAAAT
1464846 AA
1 AA
1464848 AAGGAATTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 1 0.02
12 20 0.47
13 14 0.33
14 4 0.09
15 4 0.09
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.28
Consensus pattern (12 bp):
AATAATTAAAAT
Found at i:1466155 original size:3 final size:3
Alignment explanation
Indices: 1466147--1466223 Score: 65
Period size: 3 Copynumber: 27.0 Consensus size: 3
1466137 GGCCTGTTTG
* * *
1466147 TAA TAA TAA TAA TTA T-T TAT TTAA TAA TAA TAA T-A TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
* *
1466190 TAA TAA TAA TAT TAA -AA CAA -AA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1466224 ATAAAACAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
2 9 0.14
3 52 0.83
4 2 0.03
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:1466192 original size:19 final size:20
Alignment explanation
Indices: 1466147--1466219 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 20
1466137 GGCCTGTTTG
* *
1466147 TAATAATAATAATTATTTATT
1 TAATAATAATAA-TATTAATA
1466168 TAATAATAATAATA-TAATA
1 TAATAATAATAATATTAATA
*
1466187 TAATAATAATAATATTAAAA
1 TAATAATAATAATATTAATA
*
1466207 CAA-AATAATAATA
1 TAATAATAATAATA
1466220 ATAAATAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
19 27 0.57
20 8 0.17
21 12 0.26
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.38
Consensus pattern (20 bp):
TAATAATAATAATATTAATA
Found at i:1466224 original size:19 final size:21
Alignment explanation
Indices: 1466168--1466226 Score: 77
Period size: 19 Copynumber: 2.9 Consensus size: 21
1466158 ATTATTTATT
*
1466168 TAATAATAATAATATAATATAA
1 TAATAATAATAATA-AATACAA
*
1466190 TAATAATAATATTAAA-ACAA
1 TAATAATAATAATAAATACAA
1466210 -AATAATAATAATAAATA
1 TAATAATAATAATAAATA
1466227 AAACAAATGA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 14 0.42
20 4 0.12
21 2 0.06
22 13 0.39
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
TAATAATAATAATAAATACAA
Found at i:1466234 original size:22 final size:22
Alignment explanation
Indices: 1466168--1466234 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 22
1466158 ATTATTTATT
* *
1466168 TAATAATAATAATATAATA-TAA
1 TAATAATAATAA-ATAAAACAAA
*
1466190 TAATAATAAT-ATTAAAACAAAA
1 TAATAATAATAAATAAAAC-AAA
1466212 TAATAATAATAAATAAAACAAA
1 TAATAATAATAAATAAAACAAA
1466234 T
1 T
1466235 GAAATAAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
20 4 0.11
21 1 0.03
22 26 0.68
23 7 0.18
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (22 bp):
TAATAATAATAAATAAAACAAA
Found at i:1470178 original size:14 final size:15
Alignment explanation
Indices: 1470155--1470191 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
1470145 TTATTTATTG
*
1470155 ATTTTTAATAAAAT-
1 ATTTTGAATAAAATC
1470169 ATTTTGAATAAAATC
1 ATTTTGAATAAAATC
1470184 ATTTTGAA
1 ATTTTGAA
1470192 ATTCAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (15 bp):
ATTTTGAATAAAATC
Found at i:1478982 original size:21 final size:20
Alignment explanation
Indices: 1478953--1479046 Score: 89
Period size: 21 Copynumber: 4.5 Consensus size: 20
1478943 ATTCTGACTA
1478953 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTT-CCAAAT
* *
1478974 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGA-TTTCCAAAT
* **
1478995 TCGCATTGCGATTTACGTAT
1 TCGCATTGCGATTTCCAAAT
* *
1479015 TCGCGTTGCGATTTTCATAAT
1 TCGCATTGCGATTTCCA-AAT
*
1479036 TCGCAATGCGA
1 TCGCATTGCGA
1479047 ATACGTAAAT
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
20 20 0.34
21 36 0.61
22 3 0.05
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.37
Consensus pattern (20 bp):
TCGCATTGCGATTTCCAAAT
Found at i:1478985 original size:41 final size:41
Alignment explanation
Indices: 1478940--1479046 Score: 103
Period size: 41 Copynumber: 2.6 Consensus size: 41
1478930 AATTCGCAAC
*
1478940 GCGATTCTGACT-A-TCGCATTGCGATTTCCCAAATTCGCGTT
1 GCGATT-TGACTAATTCGCATTGCGATTT-ACAAATTCGCGTT
** **
1478981 GCGATTTTCCTAATTCGCATTGCGATTTACGTATTCGCGTT
1 GCGATTTGACTAATTCGCATTGCGATTTACAAATTCGCGTT
* *
1479022 GCGATTT-TCATAATTCGCAATGCGA
1 GCGATTTGAC-TAATTCGCATTGCGA
1479047 ATACGTAAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
40 4 0.07
41 38 0.68
42 14 0.25
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (41 bp):
GCGATTTGACTAATTCGCATTGCGATTTACAAATTCGCGTT
Found at i:1479061 original size:20 final size:20
Alignment explanation
Indices: 1479036--1479129 Score: 116
Period size: 20 Copynumber: 4.7 Consensus size: 20
1479026 TTTTCATAAT
1479036 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* * * *
1479056 TCGCAACGTGATTAAGTAAA
1 TCGCAATGCGAATACGTAAA
* * *
1479076 TCGCAATACGAATTAGGAAAA
1 TCGCAATGCGAA-TACGTAAA
1479097 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
1479117 TCGCAATGCGAAT
1 TCGCAATGCGAAT
1479130 CTGACTATCG
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 43 0.72
21 17 0.28
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.21
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:1479116 original size:41 final size:41
Alignment explanation
Indices: 1479036--1479129 Score: 118
Period size: 41 Copynumber: 2.3 Consensus size: 41
1479026 TTTTCATAAT
* * *
1479036 TCGCAATGCGAA-TACGTAAATCGCAACGTGATTAAGTAAA
1 TCGCAATGCGAATTACGAAAATCGCAACGCGAATAAGTAAA
* * * *
1479076 TCGCAATACGAATTAGGAAAATCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATTACGAAAATCGCAACGCGAATAAGTAAA
1479117 TCGCAATGCGAAT
1 TCGCAATGCGAAT
1479130 CTGACTATCG
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 11 0.24
41 34 0.76
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.21
Consensus pattern (41 bp):
TCGCAATGCGAATTACGAAAATCGCAACGCGAATAAGTAAA
Found at i:1479733 original size:19 final size:19
Alignment explanation
Indices: 1479669--1479753 Score: 72
Period size: 19 Copynumber: 4.7 Consensus size: 19
1479659 TAGTTTCGAG
1479669 AATGAAAATCGCAACGCGGA
1 AATGAAAATCGCAACGC-GA
**
1479689 AATGACTATCGCAA--CG-
1 AATGAAAATCGCAACGCGA
*
1479705 -A-GAGAATCGCAACGCGA
1 AATGAAAATCGCAACGCGA
*
1479722 AATGAAAATCGCAACGAGA
1 AATGAAAATCGCAACGCGA
**
1479741 AACCAAAATCGCA
1 AATGAAAATCGCA
1479754 TTGCGATTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
14 9 0.17
15 1 0.02
16 2 0.04
17 1 0.02
18 2 0.04
19 25 0.48
20 12 0.23
ACGTcount: A:0.46, C:0.22, G:0.21, T:0.11
Consensus pattern (19 bp):
AATGAAAATCGCAACGCGA
Found at i:1479733 original size:33 final size:34
Alignment explanation
Indices: 1479675--1479740 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 34
1479665 CGAGAATGAA
**
1479675 AATCGCAACGCGGAAATGACTATCGCAACGAGAG
1 AATCGCAACGCGGAAATGAAAATCGCAACGAGAG
1479709 AATCGCAACGC-GAAATGAAAATCGCAACGAGA
1 AATCGCAACGCGGAAATGAAAATCGCAACGAGA
1479741 AACCAAAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 19 0.63
34 11 0.37
ACGTcount: A:0.42, C:0.23, G:0.24, T:0.11
Consensus pattern (34 bp):
AATCGCAACGCGGAAATGAAAATCGCAACGAGAG
Found at i:1479819 original size:20 final size:21
Alignment explanation
Indices: 1479779--1479842 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 21
1479769 CGCGTTGCGA
* **
1479779 TTCTCTCGTTGCGATAGTCAT
1 TTCTCACGTTGCGATTTTCAT
*
1479800 TTC-CACGTTGTGATTTTCA-
1 TTCTCACGTTGCGATTTTCAT
*
1479819 TTCTCTCGTTGCGATTTTCAT
1 TTCTCACGTTGCGATTTTCAT
1479840 TTC
1 TTC
1479843 AACCAAAAGA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 3 0.09
20 26 0.74
21 6 0.17
ACGTcount: A:0.12, C:0.23, G:0.16, T:0.48
Consensus pattern (21 bp):
TTCTCACGTTGCGATTTTCAT
Found at i:1481725 original size:83 final size:82
Alignment explanation
Indices: 1481595--1481862 Score: 333
Period size: 95 Copynumber: 3.1 Consensus size: 82
1481585 TGTCTTTTGT
1481595 TTTGTCTTTTGGTTG-AAGTAAATTAT-TCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
1 TTTGTCTTTTGGTTGAAAGTAAATT-TGTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
*
1481658 AACATTGTGAAGTTAGTA
65 AACACTGTGAAGTTAGTA
*
1481676 TTTGTCTTTTGGTTGAAAGTAAATTTGCTCGGCTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
1 TTTGTCTTTTGGTTGAAAGTAAATTTG-TCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
1481741 AACACTGTGAAGTTAGTA
65 AACACTGTGAAGTTAGTA
* *
1481759 TTTGTCTTTTTTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGTTTGCTGCCAATTCTTCTAAAC
1 ------------TTTGTCTTTTGGTTGAAAGTAAATTTG-TCGGTTGCTGCCAATTCTGCTAAAC
* *
1481824 TGTGTATTCTTTAATACTCTGAAGTTAGTA
53 TGTGTATTCTTTAACACTGTGAAGTTAGTA
1481854 TTTGTCTTT
1 TTTGTCTTT
1481863 GTTTGTCTTT
Statistics
Matches: 164, Mismatches: 8, Indels: 28
0.82 0.04 0.14
Matches are distributed among these distances:
81 16 0.10
82 9 0.05
83 62 0.38
95 77 0.47
ACGTcount: A:0.21, C:0.13, G:0.18, T:0.47
Consensus pattern (82 bp):
TTTGTCTTTTGGTTGAAAGTAAATTTGTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTA
ACACTGTGAAGTTAGTA
Found at i:1481808 original size:95 final size:93
Alignment explanation
Indices: 1481676--1481884 Score: 330
Period size: 95 Copynumber: 2.2 Consensus size: 93
1481666 GAAGTTAGTA
1481676 TTTGTCTTTTGGTTGAAAGTAAATTTGCTCGGCTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
1 TTTGTCTTTTGGTTGAAAGTAAATTTGCTCGGCTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
* *
1481741 AACACTGTGAAGTTAGTATTTGTCTTTTTT
66 AACACTCTGAAGTTAGTATTTGTC--TTTG
* ** *
1481771 TTTGTCTTTTGGTTGAAAGTAAATTTGTTCGTTTGCTGCCAATTCTTCTAAACTGTGTATTCTTT
1 TTTGTCTTTTGGTTGAAAGTAAATTTGCTCGGCTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
*
1481836 AATACTCTGAAGTTAGTATTTGTCTTTG
66 AACACTCTGAAGTTAGTATTTGTCTTTG
1481864 TTTGTCTTTTGGTTG-AAGTAA
1 TTTGTCTTTTGGTTGAAAGTAA
1481885 TGCAATCCAT
Statistics
Matches: 107, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
92 6 0.06
93 18 0.17
95 83 0.78
ACGTcount: A:0.20, C:0.13, G:0.19, T:0.48
Consensus pattern (93 bp):
TTTGTCTTTTGGTTGAAAGTAAATTTGCTCGGCTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
AACACTCTGAAGTTAGTATTTGTCTTTG
Found at i:1481834 original size:178 final size:171
Alignment explanation
Indices: 1481522--1481862 Score: 511
Period size: 178 Copynumber: 2.0 Consensus size: 171
1481512 TAGATTGCTT
* *
1481522 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAACTGTTTATTAACACTGTGAAGTTAGTATTG
1 AGTAAATTTACTCGGCTGCTGCCAATACTGCTAAACTGTTTATTAACACTGTGAAGTTAGTATTG
1481587 TCTTTTGTTTTGTCTTTTGGTTGAAGTAAATTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTA
66 TCTTTTGTTTTGTCTTTTGGTTGAAGTAAATTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTA
* *
1481652 TTCTTTAACATTGTGAAGTTAGTATTTGTCTTTTGGTTGAA
131 TTCTTTAACACTCTGAAGTTAGTATTTGTCTTTTGGTTGAA
* * *
1481693 AGTAAATTTGCTCGGCTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTACTCGGCTGCTGCCAATACTGCTAAAC--TGT-TT-ATTAACACTGTGAAGTTAGT
* * * *
1481758 ATTTGTCTTTTTTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGTTTGCTGCCAATTCTTCTAAA
62 A-TTGTCTTTTGTTTTGTCTTTTGGTTG-AAGTAAA-TTATTCGGTTGCTGCCAATTCTGCTAAA
*
1481823 CTGTGTATTCTTTAATACTCTGAAGTTAGTATTTGTCTTT
124 CTGTGTATTCTTTAACACTCTGAAGTTAGTATTTGTCTTT
1481863 GTTTGTCTTT
Statistics
Matches: 151, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
171 32 0.21
173 3 0.02
174 2 0.01
175 20 0.13
176 25 0.17
177 7 0.05
178 62 0.41
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.46
Consensus pattern (171 bp):
AGTAAATTTACTCGGCTGCTGCCAATACTGCTAAACTGTTTATTAACACTGTGAAGTTAGTATTG
TCTTTTGTTTTGTCTTTTGGTTGAAGTAAATTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTA
TTCTTTAACACTCTGAAGTTAGTATTTGTCTTTTGGTTGAA
Found at i:1482020 original size:19 final size:19
Alignment explanation
Indices: 1481971--1482046 Score: 109
Period size: 19 Copynumber: 4.0 Consensus size: 19
1481961 GTCTTTGGTT
1481971 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
1481990 GAGAATGAAAATCGCAACGG
1 GA-AATGAAAATCGCAACGA
* *
1482010 GAAAGGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGA
1482029 GAAATGAAAAT-GCAACGA
1 GAAATGAAAATCGCAACGA
1482047 CAAAATCGCA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
18 6 0.12
19 27 0.53
20 18 0.35
ACGTcount: A:0.50, C:0.16, G:0.25, T:0.09
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:1482125 original size:33 final size:32
Alignment explanation
Indices: 1482074--1482165 Score: 114
Period size: 31 Copynumber: 2.9 Consensus size: 32
1482064 ACTATAATCG
** * *
1482074 CGTTGCGATTTTGGTTTCGCGTTACGATTTTGT
1 CGTTGCGATTTTCATTTCGCGTTGCGA-TTTCT
*
1482107 CGTTGCGATTTTCATTTCGTGTTGCGA-TTCT
1 CGTTGCGATTTTCATTTCGCGTTGCGATTTCT
*
1482138 CGTTGCAATTTTCATTTCGCGTTGCGAT
1 CGTTGCGATTTTCATTTCGCGTTGCGAT
1482166 AGTCATTTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
31 28 0.55
33 23 0.45
ACGTcount: A:0.11, C:0.18, G:0.24, T:0.47
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCGTTGCGATTTCT
Found at i:1484151 original size:33 final size:33
Alignment explanation
Indices: 1484109--1484268 Score: 284
Period size: 33 Copynumber: 4.8 Consensus size: 33
1484099 AATAAATTCG
* *
1484109 CGTTGCGATTTTCATTTCGCTTTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
*
1484142 CGTTGCGATTTTCATTTCACATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1484175 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1484208 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
*
1484241 CATTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
1484269 AGTCATTTTC
Statistics
Matches: 122, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 122 1.00
ACGTcount: A:0.13, C:0.24, G:0.17, T:0.45
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
Found at i:1484182 original size:14 final size:14
Alignment explanation
Indices: 1484163--1484250 Score: 59
Period size: 14 Copynumber: 5.6 Consensus size: 14
1484153 TCATTTCACA
1484163 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
*
1484177 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
1484194 CATTGCGATTCTCTCG
1 --TTGCGATTCTCTCG
*
1484210 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
*
1484227 CATTGCGATTCTCTCA
1 --TTGCGATTCTCTCG
1484243 TTGCGATT
1 TTGCGATT
1484251 TTCATTTCGC
Statistics
Matches: 59, Mismatches: 5, Indels: 20
0.70 0.06 0.24
Matches are distributed among these distances:
14 20 0.34
16 13 0.22
17 14 0.24
19 12 0.20
ACGTcount: A:0.12, C:0.24, G:0.18, T:0.45
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:1484280 original size:20 final size:20
Alignment explanation
Indices: 1484241--1484295 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
1484231 GCGATTCTCT
**
1484241 CATTGCGATTTTCA-TTTCG
1 CATTGCGATAGTCATTTTCG
1484260 CATTGCGATAGTCATTTTCG
1 CATTGCGATAGTCATTTTCG
*
1484280 CATTGCGATAGACATT
1 CATTGCGATAGTCATT
1484296 AAGATGATTG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 12 0.38
20 20 0.62
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (20 bp):
CATTGCGATAGTCATTTTCG
Found at i:1484334 original size:20 final size:20
Alignment explanation
Indices: 1484262--1484334 Score: 51
Period size: 20 Copynumber: 3.6 Consensus size: 20
1484252 TCATTTCGCA
* **
1484262 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTACGTG
* *
1484282 TTGCGATAGACA-TTAAGATG
1 TTGCGATAGTCATTTACG-TG
*
1484302 ATTGCGA-ACGTCATTTCCGTG
1 -TTGCGATA-GTCATTTACGTG
1484323 TTGCGATAGTCA
1 TTGCGATAGTCA
1484335 AATGAATGCC
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 3 0.08
20 22 0.55
21 12 0.30
22 3 0.08
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (20 bp):
TTGCGATAGTCATTTACGTG
Found at i:1486789 original size:24 final size:24
Alignment explanation
Indices: 1486755--1486808 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
1486745 CTGAAAAATC
1486755 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
1486779 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
1486803 ATCAAA
1 ATCAAA
1486809 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:1486822 original size:24 final size:24
Alignment explanation
Indices: 1486755--1486822 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
1486745 CTGAAAAATC
* * *
1486755 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
1486779 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
1486803 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
1486823 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:1487718 original size:41 final size:41
Alignment explanation
Indices: 1487667--1487865 Score: 233
Period size: 41 Copynumber: 4.8 Consensus size: 41
1487657 GCGATTTACT
*
1487667 AAATCGCAATGCGATTACGTAAATTG-AAGTGCGAATTAGGA
1 AAATCGCAATGCGATTACGTAAATCGCAA-TGCGAATTAGGA
* *
1487708 AAATCGCAATGTGATTACGTAAATCGCAATGCGAATTAGTA
1 AAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGA
* * *
1487749 AAATCGCAATGCGATTACGTAAATCGCAATGCG-GTTACGT
1 AAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGA
* *
1487789 AAATCGCAATGCGAATTA-GAAAAATCGCATTGCGAATTAGGA
1 AAATCGCAATGCG-ATTACG-TAAATCGCAATGCGAATTAGGA
* ** *
1487831 AAATCGCAACGCGAATTTGGGAAATCGCAATGCGA
1 AAATCGCAATGCG-ATTACGTAAATCGCAATGCGA
1487866 TAGTCAGAAT
Statistics
Matches: 136, Mismatches: 17, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
40 17 0.12
41 83 0.61
42 35 0.26
43 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (41 bp):
AAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGA
Found at i:1487736 original size:61 final size:60
Alignment explanation
Indices: 1487656--1487865 Score: 228
Period size: 61 Copynumber: 3.4 Consensus size: 60
1487646 AGAATCTCGT
*
1487656 TGCGATTTAC-TAAATCGCAATGCG-ATTACGTAAATTGAAGTGCGAATTAGGAAAATCGCAA
1 TGCGA-TTACGTAAATCGCAATGCGAATTA-GTAAATCGAA-TGCGAATTAGGAAAATCGCAA
* * *
1487717 TGTGATTACGTAAATCGCAATGCGAATTAGTAAAATCGCAATGCG-ATTACGTAAATCGCAA
1 TGCGATTACGTAAATCGCAATGCGAATTAGT-AAATCG-AATGCGAATTAGGAAAATCGCAA
* * *
1487778 TGCGGTTACGTAAATCGCAATGCGAATTAGAAAAATCGCATTGCGAATTAGGAAAATCGCAA
1 TGCGATTACGTAAATCGCAATGCGAATTAG-TAAATCG-AATGCGAATTAGGAAAATCGCAA
* ** *
1487840 CGCGAATTTGGGAAATCGCAATGCGA
1 TGCG-ATTACGTAAATCGCAATGCGA
1487866 TAGTCAGAAT
Statistics
Matches: 127, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
60 4 0.03
61 74 0.58
62 30 0.24
63 19 0.15
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.24
Consensus pattern (60 bp):
TGCGATTACGTAAATCGCAATGCGAATTAGTAAATCGAATGCGAATTAGGAAAATCGCAA
Found at i:1487752 original size:21 final size:20
Alignment explanation
Indices: 1487656--1487865 Score: 187
Period size: 21 Copynumber: 10.2 Consensus size: 20
1487646 AGAATCTCGT
* *
1487656 TGCGATTTACTAAATCGCAA
1 TGCGAATTAGTAAATCGCAA
*
1487676 TGCG-ATTACGTAAATTG-AA
1 TGCGAATTA-GTAAATCGCAA
*
1487695 GTGCGAATTAGGAAAATCGCAA
1 -TGCGAATTA-GTAAATCGCAA
*
1487717 TGTG-ATTACGTAAATCGCAA
1 TGCGAATTA-GTAAATCGCAA
1487737 TGCGAATTAGTAAAATCGCAA
1 TGCGAATTAGT-AAATCGCAA
1487758 TGCG-ATTACGTAAATCGCAA
1 TGCGAATTA-GTAAATCGCAA
*
1487778 TGCG-GTTACGTAAATCGCAA
1 TGCGAATTA-GTAAATCGCAA
* *
1487798 TGCGAATTAGAAAAATCGCAT
1 TGCGAATTAG-TAAATCGCAA
*
1487819 TGCGAATTAGGAAAATCGCAA
1 TGCGAATTA-GTAAATCGCAA
* * *
1487840 CGCGAATTTGGGAAATCGCAA
1 TGCGAA-TTAGTAAATCGCAA
1487861 TGCGA
1 TGCGA
1487866 TAGTCAGAAT
Statistics
Matches: 160, Mismatches: 19, Indels: 21
0.80 0.09 0.10
Matches are distributed among these distances:
19 5 0.03
20 70 0.44
21 80 0.50
22 5 0.03
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.24
Consensus pattern (20 bp):
TGCGAATTAGTAAATCGCAA
Found at i:1494404 original size:5 final size:5
Alignment explanation
Indices: 1494394--1495547 Score: 1981
Period size: 5 Copynumber: 232.8 Consensus size: 5
1494384 CAATGGGTGT
1494394 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
*
1494444 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTTTG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1494494 CTATG CTATG CTATG CTATG CTATG CTATATG CTATG -TATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG C--TATG CTATG CTATG CTATG CTATG
1494545 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTA-G
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1494594 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1494644 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1494694 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1494744 CT-TG CTATG CTATG CTATG CTATG CTA-G CTAGATG CTATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG CTATG CT--ATG CTATG CTATG CTATG
1494794 CTATG CTATG CTATG CTATG CTATG CTATATG CTAT- CTATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG C--TATG CTATG CTATG CTATG CTATG
*
1494845 CTATG CTATG CTATG CTCTG CTATG CTATG CTATG CTATG CTATG CTA-G
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
* *
1494894 CGATG CTATG CTCTG CTATG CTATG CTATG CTA-G CTATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1494943 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1494993 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1495043 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1495093 CTATG CTATG CTATG CTATG CTATG CTATG C-ATG CTATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
*
1495142 CTATG CTATG CTATG CTATG CTATG CTAGG CTATG CTATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1495192 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG C-ATG CTATG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1495241 CTATG CTATG CTATG CTATG CTATG C--TG CTATG CTATG CTATG C--TG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
*
1495287 CTATG CTATG CTA-G CTATG CTATG CTATG CTATT CTATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
*
1495336 CTATG CT-TG CTATG CTATG CTATG CTATG CTGCT- CTATG CTATG CTAT-
1 CTATG CTATG CTATG CTATG CTATG CTATG CT-ATG CTATG CTATG CTATG
1495384 -TATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
1495433 CTATG CTATG CTA-G CTATG CTATG CTATATG CTATG CTATG CTATGG
1 CTATG CTATG CTATG CTATG CTATG C--TATG CTATG CTATG CTAT-G
*
1495480 CTATG CTATG CTATG CTA-- CTATG CTAGG CTATG CTATG CTATG CTATG
1 CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG CTATG
*
1495528 CTATG CTATG TATATG CTAT
1 CTATG CTATG -CTATG CTAT
1495548 TCATTACACA
Statistics
Matches: 1099, Mismatches: 18, Indels: 64
0.93 0.02 0.05
Matches are distributed among these distances:
3 12 0.01
4 47 0.04
5 1011 0.92
6 11 0.01
7 18 0.02
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (5 bp):
CTATG
Found at i:1502907 original size:8 final size:8
Alignment explanation
Indices: 1502896--1503007 Score: 77
Period size: 8 Copynumber: 13.4 Consensus size: 8
1502886 AGAGAGAGAA
1502896 AAAAAAAG
1 AAAAAAAG
*
1502904 AAAAATAG
1 AAAAAAAG
*
1502912 AAAAATAG
1 AAAAAAAG
1502920 AAAAGAAA-
1 AAAA-AAAG
*
1502928 AAAGAAAGG
1 AAA-AAAAG
1502937 AAAAATAA-
1 AAAAA-AAG
1502945 AAAAAGAAG
1 AAAAA-AAG
*
1502954 AAAAATGAG
1 AAAAA-AAG
1502963 AAAAAAAG
1 AAAAAAAG
1502971 AGATAAAAAG
1 A-A-AAAAAG
1502981 AAAAAAAG
1 AAAAAAAG
*
1502989 AGATAAAA-
1 A-AAAAAAG
*
1502997 AAGAAAAG
1 AAAAAAAG
1503005 AAA
1 AAA
1503008 TTTTTTAAAA
Statistics
Matches: 84, Mismatches: 11, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
7 5 0.06
8 46 0.55
9 26 0.31
10 7 0.08
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (8 bp):
AAAAAAAG
Found at i:1502913 original size:18 final size:18
Alignment explanation
Indices: 1502892--1503003 Score: 85
Period size: 19 Copynumber: 6.3 Consensus size: 18
1502882 AGAGAGAGAG
1502892 AGAAAAAAAAAGAAAAAT
1 AGAAAAAAAAAGAAAAAT
*
1502910 AG--AAAAATAG--AAA-
1 AGAAAAAAAAAGAAAAAT
1502923 AGAAAAAAGAAAGGAAAAAT
1 AGAAAAAA-AAA-GAAAAAT
*
1502943 A-AAAAAAGAAGAAAAAT
1 AGAAAAAAAAAGAAAAAT
*
1502960 GAGAAAAAAAGAGATAAAA-
1 -AGAAAAAAAAAGA-AAAAT
* *
1502979 AGAAAAAAAGAGATAAAAA
1 AGAAAAAAAAAGA-AAAAT
1502998 AGAAAA
1 AGAAAA
1503004 GAAATTTTTT
Statistics
Matches: 78, Mismatches: 5, Indels: 21
0.75 0.05 0.20
Matches are distributed among these distances:
13 2 0.03
14 3 0.04
15 4 0.05
16 9 0.12
17 8 0.10
18 23 0.29
19 24 0.31
20 5 0.06
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (18 bp):
AGAAAAAAAAAGAAAAAT
Found at i:1503005 original size:16 final size:18
Alignment explanation
Indices: 1502937--1503003 Score: 82
Period size: 18 Copynumber: 3.6 Consensus size: 18
1502927 AAAAGAAAGG
*
1502937 AAAAATAAAAAAAGAAGA-
1 AAAAAGAAAAAAAG-AGAT
1502955 AAAATGAGAAAAAAAGAGAT
1 AAAA--AGAAAAAAAGAGAT
1502975 AAAAAGAAAAAAAGAGAT
1 AAAAAGAAAAAAAGAGAT
1502993 AAAAAAGAAAA
1 -AAAAAGAAAA
1503004 GAAATTTTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
18 18 0.41
19 13 0.30
20 13 0.30
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (18 bp):
AAAAAGAAAAAAAGAGAT
Found at i:1505282 original size:91 final size:91
Alignment explanation
Indices: 1505033--1505487 Score: 714
Period size: 91 Copynumber: 5.0 Consensus size: 91
1505023 ATAAACCAAC
*
1505033 CAACATTTCCAGTGGAGAGTTCATAATGAGAATAACTCATCCAACGAGGGAGAAGAAGTTCATAA
1 CAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAA
*
1505098 TGAGAAGAACTTGTTAAACCTTGGCT
66 TGAGAAGAACTTGTTCAACCTTGGCT
* * * *
1505124 CAACA-TTCCAATGGAGTGTTCATATTGAGAAGAGCTCATCCAACGAGGGAGAAGAAGTTCATAA
1 CAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAA
* *
1505188 TGAGAAGAACTTGTTCAACATTGGAT
66 TGAGAAGAACTTGTTCAACCTTGGCT
* *
1505214 CAACATTTCCAGTGGATAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAATAAGTTCATAA
1 CAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAA
1505279 TGAGAAGAACTTGTTCAACCTTGGCT
66 TGAGAAGAACTTGTTCAACCTTGGCT
* * * *
1505305 CAAAATTTCTAGTTGAGAGTTCATAATGAGAAGAACTCGTCCAACGAGGGAGAAGAAGTTCATAA
1 CAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAA
1505370 TGAGAAGAACTTGTTCAACCTTGGCT
66 TGAGAAGAACTTGTTCAACCTTGGCT
* * * * * *
1505396 CAACATTTTCAATGGAGAGTTCATAATAAGAAGAACTCATCCGATGAGGGAGAATAAGTTCATAA
1 CAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAA
*
1505461 TGAGAAGAACTTGTTCAACCTTAGCT
66 TGAGAAGAACTTGTTCAACCTTGGCT
1505487 C
1 C
1505488 GTTTCCATCA
Statistics
Matches: 330, Mismatches: 33, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
90 82 0.25
91 248 0.75
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (91 bp):
CAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAA
TGAGAAGAACTTGTTCAACCTTGGCT
Found at i:1506257 original size:213 final size:215
Alignment explanation
Indices: 1505973--1506494 Score: 645
Period size: 213 Copynumber: 2.4 Consensus size: 215
1505963 ATTTCCAAAA
* * **
1505973 TTTATAAGT-TCTTCGGGTCATCCGTAAGTCTTTCAAGCATGATGATTAAATACTTCGGGTCATC
1 TTTATAAGTCT-TTCGGGCCATCAGTAAGTCTTTTGAGCATGATGATTAAATACTTCGGGTCATC
* * **
1506037 TGTAAGCCTTTAGAGCAAGATGATAAGTTCTTCAG-GCCATCCATAAGACCTTC-GG-ATAGGAT
65 TGTAAGCCTTTAGAGCAAAATGATAAGTCCTT-AGAGCCATCCATAAGACCTTCGGGCA-AAAAT
* * * *
1506099 GTTTTCAAATGAATTTGAACAATGAG-AAGTTGATGTTTTAAGAAAATGAAATCTTTGAAAACT-
128 GTATTCAAATGAAGTTCAAAAATGAGAAAG-TGATG-TTTAAGAAAATGAAATCTTTGAAAACTA
*
1506162 AA-GGTGATTTCCAAAATTTCGCAC
191 AACAGTGATTTCCAAAATTTCGCAC
*
1506186 TTTATAAGTCTTTCGGGCCATCAAG-AAGTCTTTTGAGCATGATGATTAAATCCTTCGGGTCATC
1 TTTATAAGTCTTTCGGGCCATC-AGTAAGTCTTTTGAGCATGATGATTAAATACTTCGGGTCATC
*
1506250 TGTAAGCCTTTAGAGCAAAATGATAAGTCCTTTGAGCCATCCATAAGACCTTCGGGCAAAAATGT
65 TGTAAGCCTTTAGAGCAAAATGATAAGTCCTTAGAGCCATCCATAAGACCTTCGGGCAAAAATGT
** *
1506315 ATTCCCATTAAGTTCAAAAATGAGAAAGTGATGTTTAAGAAAATGAAATCTTTGAAAACTAAAAC
130 ATTCAAATGAAGTTCAAAAATGAGAAAGTGATGTTTAAGAAAATGAAATCTTTGAAAACT-AAAC
*
1506380 AGTGATTTCCAAAATTTTGCAC
194 AGTGATTTCCAAAATTTCGCAC
* * *
1506402 --T-T-AGTCATTCGGGCCATCAGTAAGTCTTTTGAGCATGATGATTAAATTCTTCGGATCATCT
1 TTTATAAGTCTTTCGGGCCATCAGTAAGTCTTTTGAGCATGATGATTAAATACTTCGGGTCATCT
* * * * *
1506463 ATAAGCCGTTCGAGCATAATGATTAAATCCTT
66 GTAAGCCTTTAGAGCAAAATGA-TAAGTCCTT
1506495 CTGATCATCT
Statistics
Matches: 271, Mismatches: 27, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
211 2 0.01
212 72 0.27
213 139 0.51
214 32 0.12
215 6 0.02
216 20 0.07
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Consensus pattern (215 bp):
TTTATAAGTCTTTCGGGCCATCAGTAAGTCTTTTGAGCATGATGATTAAATACTTCGGGTCATCT
GTAAGCCTTTAGAGCAAAATGATAAGTCCTTAGAGCCATCCATAAGACCTTCGGGCAAAAATGTA
TTCAAATGAAGTTCAAAAATGAGAAAGTGATGTTTAAGAAAATGAAATCTTTGAAAACTAAACAG
TGATTTCCAAAATTTCGCAC
Found at i:1506479 original size:42 final size:42
Alignment explanation
Indices: 1506422--1506641 Score: 214
Period size: 42 Copynumber: 5.3 Consensus size: 42
1506412 GGGCCATCAG
* * *
1506422 TAAGTCTTTTGAGCATGATGATTAAATTCTTCGGATCATCTA
1 TAAGCCTTTCGAGCATGATGATTAAATCCTTCGGATCATCTA
* * *
1506464 TAAGCCGTTCGAGCATAATGATTAAATCCTTCTGATCATCTA
1 TAAGCCTTTCGAGCATGATGATTAAATCCTTCGGATCATCTA
*
1506506 TAAGCCTTTCGAGCATGGTGATTAAATCCTTCGGGA-CATC-A
1 TAAGCCTTTCGAGCATGATGATTAAATCCTTC-GGATCATCTA
* * * *
1506547 GTAAGTCTTTCGAGCATTAAGATTAAATCCTTCCGG-TCATCTG
1 -TAAGCCTTTCGAGCATGATGATTAAATCCTT-CGGATCATCTA
* * * * * * *
1506590 TAAGCTTTTTGAGCAAGATGA-TAAGTCTTTCGGGTCATCCA
1 TAAGCCTTTCGAGCATGATGATTAAATCCTTCGGATCATCTA
*
1506631 TAAGACTTTCG
1 TAAGCCTTTCG
1506642 GATAAGAATT
Statistics
Matches: 144, Mismatches: 28, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
40 3 0.02
41 21 0.15
42 117 0.81
43 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (42 bp):
TAAGCCTTTCGAGCATGATGATTAAATCCTTCGGATCATCTA
Found at i:1506573 original size:84 final size:84
Alignment explanation
Indices: 1506422--1506634 Score: 236
Period size: 84 Copynumber: 2.5 Consensus size: 84
1506412 GGGCCATCAG
* *
1506422 TAAGTCTTTTGAGCATGATGATTAAATTCTTCGGATCATCTATAAGCCGTTCGAGCATAATGATT
1 TAAGCCTTTTGAGCATGATGATTAAATCCTTCGGATCATCTATAAGCCGTTCGAGCATAATGATT
*
1506487 AAATCCTTCTGATCATCTA
66 AAATCCTTCCGATCATCTA
* * * *
1506506 TAAGCCTTTCGAGCATGGTGATTAAATCCTTCGGGA-CATC-AGTAAGTCTTTCGAGCATTAA-G
1 TAAGCCTTTTGAGCATGATGATTAAATCCTTC-GGATCATCTA-TAAGCCGTTCGAGCA-TAATG
* *
1506568 ATTAAATCCTTCCGGTCATCTG
63 ATTAAATCCTTCCGATCATCTA
* * * * * *
1506590 TAAGCTTTTTGAGCAAGATGA-TAAGTCTTTCGGGTCATCCATAAG
1 TAAGCCTTTTGAGCATGATGATTAAATCCTTCGGATCATCTATAAG
1506635 ACTTTCGGAT
Statistics
Matches: 108, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
82 2 0.02
83 17 0.16
84 83 0.77
85 6 0.06
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (84 bp):
TAAGCCTTTTGAGCATGATGATTAAATCCTTCGGATCATCTATAAGCCGTTCGAGCATAATGATT
AAATCCTTCCGATCATCTA
Found at i:1506802 original size:37 final size:37
Alignment explanation
Indices: 1506698--1506823 Score: 137
Period size: 37 Copynumber: 3.4 Consensus size: 37
1506688 CTTCACCTAG
* * *
1506698 TGAAGTAAATCCATCTTAAGCCTTCCCCGAAAAATAA
1 TGAAGCAAATCCATCTTAAGCCTTCACCGAAGAATAA
* * * * *
1506735 TGAAAC-AATCCACCTTAAACCTTTACCGAAGAGTAA
1 TGAAGCAAATCCATCTTAAGCCTTCACCGAAGAATAA
* * *
1506771 TGAAGCAAATCTATTTTAAGCCTTCACCGAAGAATTA
1 TGAAGCAAATCCATCTTAAGCCTTCACCGAAGAATAA
*
1506808 TGAAGCAAATCAATCT
1 TGAAGCAAATCCATCT
1506824 CGAGTATGTT
Statistics
Matches: 70, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
36 29 0.41
37 41 0.59
ACGTcount: A:0.40, C:0.22, G:0.12, T:0.25
Consensus pattern (37 bp):
TGAAGCAAATCCATCTTAAGCCTTCACCGAAGAATAA
Found at i:1507022 original size:3 final size:3
Alignment explanation
Indices: 1507003--1507042 Score: 62
Period size: 3 Copynumber: 12.7 Consensus size: 3
1506993 ATATTATAAA
1507003 TAT TAAT TAT ATAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT T-AT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1507043 ATACAAATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
3 29 0.83
4 6 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:1508839 original size:2 final size:2
Alignment explanation
Indices: 1508832--1508863 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
1508822 CACATGTTAG
1508832 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1508864 CACTTTTTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1510600 original size:27 final size:26
Alignment explanation
Indices: 1510564--1510623 Score: 93
Period size: 26 Copynumber: 2.2 Consensus size: 26
1510554 AAATGTTATA
*
1510564 TTTTTAAAATTACGAATTAAAAACATT
1 TTTTTTAAA-TACGAATTAAAAACATT
1510591 TTTTTTAAATACGAATTAAAAACATT
1 TTTTTTAAATACGAATTAAAAACATT
1510617 TTCTTTT
1 TT-TTTT
1510624 CAGATCGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 19 0.61
27 12 0.39
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (26 bp):
TTTTTTAAATACGAATTAAAAACATT
Found at i:1513604 original size:2 final size:2
Alignment explanation
Indices: 1513599--1513623 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1513589 CTTTTTATGT
1513599 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1513624 TCAGAGATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1515212 original size:32 final size:32
Alignment explanation
Indices: 1515170--1515247 Score: 147
Period size: 32 Copynumber: 2.4 Consensus size: 32
1515160 ATGTTGAAGG
1515170 TATCGATACTTTTATAAGTATATGTATCATAT
1 TATCGATACTTTTATAAGTATATGTATCATAT
*
1515202 TATCAATACTTTTATAAGTATATGTATCATAT
1 TATCGATACTTTTATAAGTATATGTATCATAT
1515234 TATCGATACTTTTA
1 TATCGATACTTTTA
1515248 AAAGAACAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.47
Consensus pattern (32 bp):
TATCGATACTTTTATAAGTATATGTATCATAT
Found at i:1515896 original size:223 final size:223
Alignment explanation
Indices: 1515508--1515938 Score: 684
Period size: 223 Copynumber: 1.9 Consensus size: 223
1515498 GTACATTGTC
* * * *
1515508 GAAACCCTAGTTTTTTAGTATTACAGTAATCGGAAATATGGTATTATGTGTTTGGGGTTTTTGAA
1 GAAACCCTAGTTTTTTAGTATTACAGTAATCAGAAATAGGGTATTATGGGTTTAGGGTTTTTGAA
* *
1515573 GTAAAGAAGTATTTGGGATCGATTACAGGTAGAAAGTGATATTCTAGGTAGAAAATAAATATTGA
66 GTAAAGAAGGATTTGGGATCGATTACAGGTAGAAAGTGATATTCTAGGTAGAAAATAAATATCGA
* * * * *
1515638 TGCTTTTATATAATATTATAGGTAGGAAATGATATTATAGGTTGTATAAATGTATCGATACTTGT
131 TACTTTTATATAATATTATAGGTAGAAAATGATATTATAGGTTGTATAAATGTACCAATACTTAT
1515703 AGTAGAGAGTATTCTTATTCCTTTAAAG
196 AGTAGAGAGTATTCTTATTCCTTTAAAG
* *
1515731 GAAACCCTAGTTTTTTTAGTATTACAGTATTCAGAAATAGGGT-TTATGGGTTTAGGGTTTTTTA
1 GAAACCCTAG-TTTTTTAGTATTACAGTAATCAGAAATAGGGTATTATGGGTTTAGGGTTTTTGA
* * * *
1515795 AGTTAAGTAGGATTTGGGATCGATTAGAGTTAGAAAGTGATATTCTAGGTAGAAAATAAATATCG
65 AGTAAAGAAGGATTTGGGATCGATTACAGGTAGAAAGTGATATTCTAGGTAGAAAATAAATATCG
*
1515860 ATACTTTTATATAATATTATAGGTAGAAAATGATATTGTAGGTTGTATAAATGTACCAATACTTA
130 ATACTTTTATATAATATTATAGGTAGAAAATGATATTATAGGTTGTATAAATGTACCAATACTTA
1515925 TAGTAGAGAGTATT
195 TAGTAGAGAGTATT
1515939 AACACTCATT
Statistics
Matches: 189, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
223 160 0.85
224 29 0.15
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (223 bp):
GAAACCCTAGTTTTTTAGTATTACAGTAATCAGAAATAGGGTATTATGGGTTTAGGGTTTTTGAA
GTAAAGAAGGATTTGGGATCGATTACAGGTAGAAAGTGATATTCTAGGTAGAAAATAAATATCGA
TACTTTTATATAATATTATAGGTAGAAAATGATATTATAGGTTGTATAAATGTACCAATACTTAT
AGTAGAGAGTATTCTTATTCCTTTAAAG
Found at i:1517878 original size:14 final size:15
Alignment explanation
Indices: 1517859--1517887 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
1517849 GAATTTAATA
1517859 AAAGATGAA-GAAGT
1 AAAGATGAATGAAGT
1517873 AAAGATGAATGAAGT
1 AAAGATGAATGAAGT
1517888 GAGGAGGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.55, C:0.00, G:0.28, T:0.17
Consensus pattern (15 bp):
AAAGATGAATGAAGT
Found at i:1519446 original size:18 final size:18
Alignment explanation
Indices: 1519405--1519453 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 18
1519395 GATGTAAGCC
* *
1519405 AAATTTTTTATGTGAATT
1 AAATTTTGTATGTGAATG
*
1519423 ATAATTTTGTATGTTAATG
1 A-AATTTTGTATGTGAATG
*
1519442 AAATTATGTATG
1 AAATTTTGTATG
1519454 AGATGAGCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (18 bp):
AAATTTTGTATGTGAATG
Done.