genome.fa.s8260.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008260.1 Hibiscus syriacus cultivar Beakdansim tig00110913_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75047

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1958--1999	20	2.0	21	90	4	68	16	4	11	66	1.40
2451--2529	2	39.5	2	97	0	149	49	0	1	49	1.09
5374--5412	15	2.5	16	95	4	71	48	30	15	5	1.66
18365--18433	11	5.8	11	71	20	50	81	0	11	7	0.88
18393--18442	8	6.5	8	84	11	52	84	0	8	8	0.79
19346--20103	55	13.9	55	84	6	863	30	16	25	26	1.97
19807--19967	52	3.1	51	80	12	200	32	19	24	23	1.98
21180--21219	16	2.5	16	100	0	80	50	30	15	5	1.65
27600--27735	69	2.0	69	88	0	200	25	13	30	30	1.94
27793--27823	2	15.5	2	93	0	53	45	0	54	0	0.99
28684--28727	23	1.9	23	90	0	70	59	18	11	11	1.61
28716--28770	22	2.4	23	81	6	76	45	14	21	18	1.85
29553--29585	17	1.9	17	93	0	57	45	15	9	30	1.77
34086--34222	69	2.0	69	82	2	168	27	15	31	25	1.96
36283--36328	21	2.2	21	100	0	92	50	23	15	10	1.75
37381--37443	16	3.9	16	89	0	90	20	20	12	46	1.83
37630--37656	13	2.1	13	100	0	54	55	0	0	44	0.99
37784--37849	15	4.4	15	72	14	64	51	3	7	37	1.46
38619--38663	20	2.2	20	92	0	72	62	15	6	15	1.52
38628--38672	20	2.2	20	88	0	72	66	13	6	13	1.43
40204--40268	23	2.9	23	71	15	64	44	1	3	50	1.26
40257--40407	31	5.0	30	72	13	107	49	3	5	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40264--40310	24	1.9	25	82	4	60	55	4	2	38	1.31
40262--40441	88	2.0	88	85	6	240	48	4	6	40	1.48
40471--40606	57	2.4	55	81	4	157	40	6	8	44	1.60
40564--40637	37	2.1	36	84	5	96	40	12	8	39	1.72
40765--41045	2	143.0	2	67	18	128	43	4	2	49	1.35
40881--40917	15	2.5	15	86	0	56	40	2	2	54	1.29
40833--40988	78	2.0	77	92	3	260	43	3	1	50	1.31
40961--41045	13	6.3	13	82	9	91	42	3	4	49	1.41
40996--41042	17	2.8	17	75	18	53	44	2	2	51	1.25
40816--40992	78	2.2	77	89	5	232	43	5	2	49	1.37
41119--41153	18	1.9	18	94	0	61	42	5	11	40	1.65
41163--41206	14	3.1	14	86	0	52	36	0	22	40	1.54
41174--41222	14	3.5	14	86	5	55	28	0	28	42	1.56
41338--41447	42	2.6	42	95	0	193	40	12	8	39	1.73
41654--41788	2	69.0	2	71	17	88	45	5	2	46	1.37
41749--41782	15	2.3	15	94	0	59	41	2	5	50	1.42
41749--41818	17	4.4	17	74	15	60	45	4	4	45	1.42
41749--41988	13	18.0	13	64	22	72	43	5	5	46	1.47
41700--41842	64	2.2	63	76	6	151	45	6	2	45	1.43
41874--42029	18	8.3	18	73	18	95	45	2	5	46	1.40
41765--42024	98	2.6	99	86	6	332	44	4	5	46	1.44
42709--42847	64	2.2	64	82	2	181	28	28	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43640--43665	2	13.0	2	100	0	52	50	0	0	50	1.00
51417--51488	37	2.0	36	83	5	92	34	4	15	45	1.65
51902--51950	16	3.0	16	96	3	89	36	6	20	36	1.78
55997--56077	37	2.2	37	86	4	112	35	6	14	43	1.71
58559--58624	30	2.2	31	81	10	75	43	1	3	51	1.26
59206--59287	21	4.5	18	71	21	55	31	3	0	64	1.11
59255--59294	14	2.7	14	92	7	62	35	2	0	62	1.09
59448--59472	13	1.9	13	100	0	50	12	8	0	80	0.92
59461--59541	35	2.3	36	85	6	105	24	3	4	66	1.28
59673--59738	26	2.5	27	76	16	68	15	6	4	74	1.18
62860--62912	13	4.2	13	82	17	67	77	3	16	1	1.01
62862--62913	27	2.0	25	92	7	86	75	3	17	3	1.11
62854--62913	25	2.4	25	86	8	79	75	3	18	3	1.09
62985--63113	69	1.9	69	95	0	231	38	24	12	24	1.90
64581--64672	39	2.3	39	81	1	94	32	17	14	35	1.90
64679--64765	37	2.4	36	82	3	93	25	20	12	41	1.88
64679--64755	37	2.1	36	87	2	109	23	20	14	41	1.89
64590--64861	102	2.7	101	88	4	393	29	20	12	38	1.89
64781--64937	36	4.3	36	86	1	206	24	22	14	38	1.91
64899--65071	67	2.6	67	87	5	219	32	20	8	37	1.84
65745--66227	106	4.6	105	81	4	512	36	24	17	21	1.95
65745--66226	212	2.3	206	84	3	617	36	24	17	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67587--67629	23	1.9	22	90	4	68	25	6	0	67	1.15
67618--67692	2	38.5	2	77	10	66	40	2	4	53	1.34
67718--67782	18	3.5	18	73	8	67	26	6	1	66	1.24
67787--67871	16	5.2	17	71	15	56	24	4	1	69	1.15
67748--67901	75	2.0	75	81	12	181	24	5	1	68	1.21
68050--68102	27	2.0	27	85	7	72	11	5	7	75	1.18
68060--68114	27	2.0	27	82	6	67	12	7	7	72	1.26
70548--70700	75	2.0	75	100	0	306	37	22	22	16	1.93
72379--72420	20	2.0	21	90	4	68	40	9	14	35	1.78

Tables:   1

The End!