Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008261.1 Hibiscus syriacus cultivar Beakdansim tig00110914_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103319

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3442--3499
28
2.0
28
83
9
73
18
3
22
55
1.58
4199--4343
65
2.2
64
79
8
152
32
20
17
29
1.96
4333--4384
18
2.9
18
80
5
61
25
25
26
23
2.00
5958--6109
69
2.2
69
81
4
166
38
3
34
23
1.73
7514--7557
23
1.9
23
85
0
61
31
25
15
27
1.96
7794--7835
15
2.8
15
85
7
50
38
26
9
26
1.87
8805--8853
20
2.5
20
89
0
71
14
8
40
36
1.75
9012--9081
20
3.5
20
80
1
79
37
20
8
34
1.83
16991--17050
23
2.7
21
85
14
84
38
28
6
26
1.81
17258--17321
27
2.3
27
84
7
76
39
23
0
37
1.55
17259--17310
7
7.4
7
77
16
54
38
26
0
34
1.57
17259--17310
15
3.7
15
78
19
58
38
26
0
34
1.57
17274--17327
13
4.1
13
81
11
56
40
20
0
38
1.53
17454--17506
2
26.5
2
100
0
106
50
0
0
49
1.00
21954--22036
27
3.2
27
62
16
66
48
8
9
33
1.66
21936--22038
51
2.0
51
98
0
197
43
7
10
37
1.68
28747--28809
27
2.4
27
84
7
76
66
1
7
23
1.27
28758--28792
16
2.1
18
89
10
56
65
0
8
25
1.21
28819--28843
2
12.5
2
100
0
50
52
0
0
48
1.00
28912--28974
2
31.5
2
84
6
83
53
3
0
42
1.16
29992--30963
105
9.3
105
90
3
1396
22
18
26
33
1.96
29992--30963
415
2.3
408
88
4
1044
22
18
26
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31797--31954
67
2.4
67
85
5
205
34
12
22
31
1.90
31899--31967
35
2.0
35
82
0
84
39
13
21
26
1.90
31898--32287
102
3.8
102
91
0
613
37
12
21
28
1.89
31997--32305
37
8.9
37
68
17
205
38
12
21
27
1.90
33800--33861
20
3.0
21
79
9
65
1
16
6
75
1.08
33818--33870
23
2.4
22
84
6
72
0
15
5
79
0.91
35027--35062
8
4.6
8
89
6
56
55
13
16
13
1.69
35027--35062
15
2.3
15
90
4
54
55
13
16
13
1.69
37003--37037
16
2.1
18
89
10
56
65
0
8
25
1.21
37745--37818
3
25.0
3
94
2
132
32
1
0
66
1.00
43094--43302
65
3.3
63
76
9
208
26
19
22
31
1.98
45540--45567
8
3.5
8
100
0
56
67
0
10
21
1.20
45951--46017
21
3.2
20
78
14
64
25
19
23
31
1.98
51798--51909
57
2.0
57
87
5
165
28
20
22
28
1.98
60218--60267
21
2.4
21
83
3
57
28
0
2
70
0.99
60221--60263
16
2.7
16
88
0
59
25
0
2
72
0.97
60237--60279
21
2.1
20
91
4
68
23
0
0
76
0.78
62851--62882
7
4.6
7
100
0
64
43
15
28
12
1.83
63515--64145
314
2.0
314
98
0
1219
36
12
14
35
1.85
65612--66038
54
7.9
54
88
2
588
37
17
12
33
1.87
65612--66038
110
4.0
108
87
2
597
37
17
12
33
1.87
69489--69547
30
2.0
30
86
6
84
33
25
27
13
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73109--73244
29
4.6
29
79
3
155
36
8
0
53
1.37
73359--73435
30
2.6
30
89
0
109
48
1
10
40
1.46
73408--73540
29
4.2
32
78
11
100
56
0
8
34
1.35
73429--73537
29
3.7
29
83
2
128
56
0
8
33
1.35
73245--73617
30
12.7
29
69
16
105
54
2
7
36
1.40
74356--74637
138
2.0
140
95
1
514
48
8
3
39
1.51
76813--76841
13
2.1
14
93
6
51
27
24
6
41
1.80
90555--90594
21
1.9
21
84
0
53
27
17
20
35
1.95
92482--92549
35
1.9
35
84
0
91
36
20
19
23
1.95
92980--93006
2
13.5
2
100
0
54
48
0
0
51
1.00
94198--94353
61
2.6
61
77
3
163
42
5
20
30
1.75
94659--94698
21
1.9
21
90
10
64
42
2
0
55
1.13
95617--95658
16
2.6
16
88
0
66
14
28
19
38
1.90
99608--99675
24
2.8
24
80
8
75
14
8
19
57
1.63
102959--102997
2
20.0
2
94
5
71
51
0
0
48
1.00

Tables:   1

The End!