genome.fa.s8262.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008262.1 Hibiscus syriacus cultivar Beakdansim tig00110916_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68419

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73--106	16	2.1	16	94	0	59	32	8	26	32	1.87
4122--4208	36	2.5	35	83	7	104	31	8	17	43	1.78
5574--5605	2	16.0	2	100	0	64	50	0	0	50	1.00
5833--5878	10	4.4	11	75	8	51	80	4	0	15	0.86
5837--5876	21	1.9	21	94	0	71	77	5	0	17	0.94
7436--7563	63	2.0	63	98	0	247	22	18	21	37	1.94
9701--9766	32	2.1	32	94	0	114	53	16	7	22	1.68
10210--10310	23	4.3	23	83	7	105	12	8	18	59	1.59
10256--10301	13	3.8	13	75	16	53	10	8	19	60	1.55
13495--13580	31	2.8	31	83	0	127	25	16	13	44	1.85
13496--13597	31	3.3	30	80	2	105	28	15	11	44	1.82
15154--15206	2	26.5	2	100	0	106	50	0	0	49	1.00
17504--17584	30	2.8	29	77	5	83	54	1	2	41	1.21
18359--18496	21	6.7	21	72	6	77	36	25	16	21	1.94
18463--18655	20	9.6	20	83	4	228	35	25	20	18	1.95
19038--19108	33	2.2	33	89	0	106	11	21	18	49	1.78
19186--19263	21	3.8	21	84	3	113	47	16	24	11	1.80
19248--19304	14	3.7	14	70	20	51	45	22	22	8	1.80
19184--19320	33	3.8	33	79	16	139	46	20	22	10	1.80
19316--19413	19	5.7	19	71	22	99	10	23	21	44	1.82
19338--19427	14	5.7	14	72	23	72	8	24	22	44	1.81
19321--19435	33	3.5	33	100	0	230	9	23	20	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21133--21791	93	7.1	93	97	1	1257	22	12	19	45	1.84
21839--21967	19	7.3	19	75	17	125	45	28	16	9	1.78
21875--21967	33	2.8	32	91	4	150	46	27	17	8	1.77
21839--21967	52	2.5	52	74	14	140	45	28	16	9	1.78
21967--22062	19	5.6	18	74	22	91	12	18	19	48	1.79
21980--22034	16	3.4	16	72	22	51	10	20	20	49	1.78
21987--22041	14	3.6	14	76	21	56	10	20	21	47	1.80
21968--22060	33	2.8	33	95	0	159	11	19	20	48	1.80
21963--22077	19	6.6	19	71	18	88	11	19	22	46	1.81
24001--24036	14	2.6	14	90	0	54	30	0	22	47	1.52
24143--24240	19	5.4	19	84	13	143	45	17	22	14	1.84
24143--24258	53	2.2	53	98	1	225	43	18	24	13	1.86
24273--24327	14	3.6	14	73	21	56	10	23	20	45	1.82
24287--24485	19	11.4	19	73	21	186	14	20	18	46	1.83
24265--24518	67	3.7	67	79	12	275	13	21	19	45	1.84
24287--24457	53	3.2	53	96	0	308	14	21	17	46	1.83
24265--24499	33	6.9	33	78	13	246	13	21	18	45	1.84
26782--26806	12	2.1	12	100	0	50	0	28	0	72	0.86
26981--27027	24	2.0	24	87	8	69	38	21	14	25	1.92
27710--27939	20	11.5	20	85	1	237	19	18	24	36	1.94
27926--28008	21	4.0	21	71	6	69	26	15	24	33	1.95
28324--28354	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32553--32626	21	3.5	21	98	0	139	24	6	28	40	1.80
32846--33246	140	2.9	139	85	4	531	37	16	16	29	1.91
33596--33712	62	2.0	59	88	9	177	54	14	10	20	1.69
42743--42767	11	2.3	11	100	0	50	60	8	0	32	1.26
45644--45696	2	26.5	2	100	0	106	50	0	0	49	1.00
47096--47137	18	2.2	20	87	8	61	57	0	7	35	1.26
47218--47255	2	19.0	2	100	0	76	50	0	0	50	1.00
48286--48346	3	20.7	3	93	3	106	65	0	0	34	0.93
49532--49600	11	6.1	11	71	17	52	57	2	4	34	1.33
49569--49626	26	2.2	26	84	3	71	53	5	3	37	1.40
49631--49694	28	2.4	26	78	14	67	45	6	4	43	1.50
59967--60008	2	21.0	2	100	0	84	50	0	0	50	1.00
61462--61532	2	35.5	2	77	16	67	46	4	2	46	1.37
62556--62601	3	15.7	3	90	4	76	65	0	0	34	0.93

Tables:   1

The End!