Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008263.1 Hibiscus syriacus cultivar Beakdansim tig00110917_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50677

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7570--7656
45
1.9
45
92
0
147
42
11
17
28
1.84
15960--16013
20
2.7
20
97
0
99
37
18
20
24
1.94
16002--16051
20
2.5
20
90
0
73
22
30
24
24
1.99
19171--19205
18
1.9
18
94
0
61
54
22
2
20
1.58
19263--19545
140
2.0
140
97
0
539
28
13
14
43
1.83
19516--19606
20
4.6
20
92
0
146
30
19
19
29
1.97
21215--21336
42
2.9
42
75
7
113
26
18
33
21
1.96
21215--21332
21
5.6
21
76
0
83
25
18
33
22
1.96
21843--21910
20
3.4
20
82
8
84
36
23
19
20
1.95
21916--21969
19
2.8
19
88
0
72
48
24
16
11
1.79
21974--22011
20
1.9
20
94
0
67
13
21
18
47
1.82
21991--22023
14
2.4
14
94
0
57
12
18
21
48
1.80
22024--22098
20
3.8
19
80
7
87
20
20
22
37
1.94
22005--22117
40
2.9
38
72
7
109
18
17
22
41
1.90
24023--24108
20
4.4
20
83
4
104
48
24
16
10
1.77
24498--24548
22
2.3
22
96
0
93
19
11
45
23
1.83
24756--24796
21
2.0
21
90
0
64
29
17
26
26
1.97
29793--29852
20
3.0
20
69
16
54
48
0
0
51
1.00
31059--31086
14
2.0
14
100
0
56
35
7
7
50
1.57
34626--34723
49
2.0
50
90
6
155
23
30
26
19
1.98
35086--35117
10
3.1
10
95
4
55
31
0
0
68
0.90
36528--36584
9
6.7
9
74
11
57
64
1
0
33
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36530--36582
16
3.2
17
84
10
65
66
1
0
32
1.03
36540--36585
17
2.8
17
93
3
76
63
4
0
32
1.14
37798--37856
29
2.0
29
100
0
118
23
13
13
49
1.78
42480--42538
29
2.0
29
100
0
118
23
13
13
49
1.78
46972--47011
20
2.0
21
85
5
55
57
5
30
7
1.48

Tables:   1

The End!