genome.fa.s8265.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008265.1 Hibiscus syriacus cultivar Beakdansim tig00110919_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111834

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2952--3034	32	2.7	32	87	9	118	25	6	39	28	1.79
7245--7360	36	3.3	35	85	10	148	28	3	37	31	1.74
7282--7346	13	5.4	12	75	21	57	29	3	35	32	1.73
7267--7360	36	2.6	36	93	1	154	26	4	36	32	1.76
9190--9232	23	1.9	21	81	13	50	34	13	18	32	1.90
10426--10476	24	2.3	23	90	10	79	9	17	11	60	1.57
12972--13013	19	2.2	19	86	0	57	30	9	9	50	1.67
13820--13851	13	2.5	13	95	5	57	84	0	15	0	0.63
13825--13859	13	2.5	15	90	9	56	85	0	14	0	0.59
13820--13859	13	3.2	12	86	10	53	85	0	15	0	0.61
29583--29685	34	3.0	34	83	9	104	31	35	1	31	1.69
32514--32556	20	2.2	20	87	4	61	32	9	9	48	1.67
32892--32917	13	2.0	13	100	0	52	23	38	0	38	1.55
35475--35526	19	2.6	20	87	6	70	42	5	11	40	1.65
36436--36495	30	2.0	31	83	3	77	55	10	8	26	1.61
44352--44395	20	2.2	20	84	8	54	20	15	0	63	1.31
52622--52681	30	2.0	31	83	3	77	55	10	8	26	1.61
56735--56774	19	2.0	20	90	4	64	65	0	15	20	1.28
57187--57237	19	2.6	20	90	3	77	43	5	15	35	1.71
58136--58195	30	2.0	31	86	3	86	53	10	8	28	1.63
58819--58893	35	2.2	34	92	2	123	28	38	1	32	1.65
61063--61167	36	2.9	36	88	1	149	28	36	5	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61542--61580	13	2.9	14	81	18	55	76	7	15	0	0.99
61602--61648	14	3.1	15	75	12	51	72	6	19	2	1.17
64492--64576	11	7.2	11	72	22	66	31	36	3	28	1.74
64489--64593	36	2.9	36	95	1	185	30	36	4	28	1.78
75978--76045	33	2.1	33	83	5	84	30	36	1	30	1.67
79914--79964	20	2.6	20	90	3	77	35	15	5	43	1.71
84081--84131	20	2.6	20	90	3	77	35	15	5	43	1.71
88022--88072	20	2.6	20	90	3	77	35	15	5	43	1.71
88744--88768	5	5.0	5	100	0	50	80	0	20	0	0.72
92114--92164	20	2.6	20	90	3	77	35	15	5	43	1.71
93076--93142	13	5.4	13	73	10	59	28	1	41	28	1.65
93485--93534	19	2.6	19	90	0	82	44	6	14	36	1.69
111555--111586	15	2.1	16	94	5	57	25	18	15	40	1.90

Tables:   1

The End!