Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008267.1 Hibiscus syriacus cultivar Beakdansim tig00110922_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60196

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9023--9047
10
2.5
10
100
0
50
52
20
8
20
1.71
13218--13247
16
1.9
15
93
6
51
20
16
0
63
1.31
13848--13885
19
2.1
18
85
9
51
44
2
10
42
1.52
14293--14340
13
3.5
13
83
8
51
64
27
0
8
1.22
14304--14349
13
3.5
13
84
3
56
58
26
0
15
1.37
15561--15590
12
2.5
12
94
0
51
13
0
56
30
1.37
16250--16288
20
2.0
20
89
0
60
25
17
30
25
1.97
22247--22273
13
2.1
13
100
0
54
48
14
0
37
1.45
32863--32887
10
2.5
10
100
0
50
52
20
8
20
1.71
33702--33748
20
2.3
20
85
0
58
19
23
27
29
1.98
33825--33916
21
4.4
21
93
2
159
34
26
14
25
1.93
33825--33916
41
2.2
42
94
1
159
34
26
14
25
1.93
40108--40149
22
1.9
22
90
0
66
23
42
23
9
1.83
42963--43056
3
31.7
3
95
2
172
34
1
0
64
1.00
43520--43570
25
2.1
25
85
7
70
68
5
21
3
1.27
44353--44393
19
2.2
19
91
4
66
14
4
7
73
1.22
44433--44460
12
2.3
12
100
0
56
39
0
0
60
0.97
45150--45191
23
1.9
23
85
9
61
28
0
2
69
1.01
45184--45220
15
2.7
15
88
12
53
24
5
8
62
1.44
55805--55840
18
2.0
18
88
0
54
80
0
11
8
0.90
55803--55846
16
2.8
16
82
0
52
79
0
13
6
0.92
56970--57648
84
8.2
84
96
3
1234
27
14
21
36
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56970--57648
250
2.7
251
95
3
1239
27
14
21
36
1.92
56970--57648
166
4.1
168
95
3
1234
27
14
21
36
1.92
58356--59354
113
8.9
113
95
2
1755
38
12
19
29
1.88
58353--59354
224
4.5
225
95
2
1746
38
12
19
29
1.89
59670--59735
3
23.3
3
88
11
104
33
0
0
66
0.92
59667--59746
11
7.5
11
85
13
105
36
0
0
63
0.94
59670--59746
14
5.4
14
87
7
111
36
0
0
63
0.95
60052--60095
21
2.1
21
83
8
54
18
31
27
22
1.97

Tables:   1

The End!