Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008269.1 Hibiscus syriacus cultivar Beakdansim tig00110926_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 799769
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 5
Found at i:737948 original size:18 final size:18
Alignment explanation
Indices: 737925--737961 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
737915 CGAAATATAT
737925 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
737943 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
737961 A
1 A
737962 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:738238 original size:25 final size:25
Alignment explanation
Indices: 738210--738260 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
738200 TTAATCCAAA
*
738210 TAATGTACCCATAACAATGTTCAAT
1 TAATGTACCCACAACAATGTTCAAT
*
738235 TAATGTACCCACAACAATGTTTAAT
1 TAATGTACCCACAACAATGTTCAAT
738260 T
1 T
738261 GATTTGTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (25 bp):
TAATGTACCCACAACAATGTTCAAT
Found at i:738554 original size:21 final size:22
Alignment explanation
Indices: 738529--738580 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
738519 ACACTTTACA
*
738529 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
738552 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
738575 ATATAA
1 ATATAA
738581 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:738565 original size:23 final size:23
Alignment explanation
Indices: 738539--738601 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
738529 ATATAACCAC
738539 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
738562 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
738585 TACCTATTACATCATAT
1 TACCTATTACATTATAT
738602 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:738983 original size:21 final size:22
Alignment explanation
Indices: 738958--739009 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
738948 ACACTTTACA
*
738958 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
738981 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
739004 ATATAA
1 ATATAA
739010 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:738994 original size:23 final size:23
Alignment explanation
Indices: 738968--739030 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
738958 ATATAACCAC
738968 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
738991 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
739014 TACCTATTACATCATAT
1 TACCTATTACATTATAT
739031 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:741921 original size:183 final size:184
Alignment explanation
Indices: 741606--741948 Score: 589
Period size: 183 Copynumber: 1.9 Consensus size: 184
741596 TTCAAATTAC
*
741606 CGACACTTTTTTAAATGGTATCGACACATTTTTATTCCAATATGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTATTCCAATATGGACATAAAGTACCGACACAAT
* *
741671 ATTATAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
*
741736 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGT
131 ATATTACAAAATTACCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGT
*
741790 CGACAC-TTTTTAAATCGTATCGACACATTTTTCTTCCAATATGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTATTCCAATATGGACATAAAGTACCGACACAAT
*
741854 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAGACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
* * **
741919 ATATTGCAAATTTACCTATTTTATTATAAT
131 ATATTACAAAATTACCTATTACATTATAAT
741949 ATGTTGAAAG
Statistics
Matches: 149, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
183 143 0.96
184 6 0.04
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (184 bp):
CGACACTTTTTTAAATCGTATCGACACATTTTTATTCCAATATGGACATAAAGTACCGACACAAT
ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
ATATTACAAAATTACCTATTACATTATAATTATGGGTTCCGATGTGTAAAATGT
Found at i:743425 original size:3 final size:3
Alignment explanation
Indices: 743417--743503 Score: 84
Period size: 3 Copynumber: 29.0 Consensus size: 3
743407 ACTTGTTTGG
* * * **
743417 ATC ATC ATC TTC ATC ATC ATC ATC ATC ATC GTC ATC ATC TTC ATC GCC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * * * *
743465 AGC TTC ATC GTC ATC ATC ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
743504 GTCAGCTTCA
Statistics
Matches: 65, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.24, C:0.34, G:0.06, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:743440 original size:18 final size:18
Alignment explanation
Indices: 743417--743518 Score: 87
Period size: 18 Copynumber: 5.7 Consensus size: 18
743407 ACTTGTTTGG
743417 ATCATCATCTTCATCATC
1 ATCATCATCTTCATCATC
* *
743435 ATCATCATCATCGTCATC
1 ATCATCATCTTCATCATC
* ** * *
743453 ATCTTCATCGCCAGCTTC
1 ATCATCATCTTCATCATC
* *
743471 ATCGTCATCATCATCATC
1 ATCATCATCTTCATCATC
* *
743489 ATCGTCATCTTCATCGTC
1 ATCATCATCTTCATCATC
* *
743507 AGCTTCATCTTC
1 ATCATCATCTTC
743519 TGCGACCGCT
Statistics
Matches: 67, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 67 1.00
ACGTcount: A:0.23, C:0.34, G:0.07, T:0.36
Consensus pattern (18 bp):
ATCATCATCTTCATCATC
Found at i:743484 original size:42 final size:42
Alignment explanation
Indices: 743425--743515 Score: 146
Period size: 42 Copynumber: 2.2 Consensus size: 42
743415 GGATCATCAT
*
743425 CTTCATCATCATCATCATCATCGTCATCATCTTCATCGCCAG
1 CTTCATCATCATCATCATCATCATCATCATCTTCATCGCCAG
* * *
743467 CTTCATCGTCATCATCATCATCATCGTCATCTTCATCGTCAG
1 CTTCATCATCATCATCATCATCATCATCATCTTCATCGCCAG
743509 CTTCATC
1 CTTCATC
743516 TTCTGCGACC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.22, C:0.35, G:0.08, T:0.35
Consensus pattern (42 bp):
CTTCATCATCATCATCATCATCATCATCATCTTCATCGCCAG
Found at i:745704 original size:197 final size:199
Alignment explanation
Indices: 744978--746739 Score: 3331
Period size: 199 Copynumber: 8.9 Consensus size: 199
744968 TTTAAATTAG
744978 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
745043 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
745108 CGACAC-TTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
745172 AAAA
196 AAAA
745176 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
745241 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
745306 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGGAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
745371 AAAA
196 AAAA
745375 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
745440 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
745505 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTG-TTTCCATTCATTCT-GGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
745568 AAAA
196 AAAA
745572 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
745637 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
745702 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
745767 AAAA
196 AAAA
*
745771 TATCGACACAAAC--TATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
745834 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
745899 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
745964 AAAA
196 AAAA
* *
745968 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCAAAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
746033 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
746097 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGG-AA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
746161 AAAA
196 AAAA
*
746165 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
746230 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
746295 CGATACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
746360 AAAA
196 AAAA
*
746364 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
746429 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
** **
746494 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGAAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
746559 AAAA
196 AAAA
746563 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
746628 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
746693 CGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
131 CGACAC-TTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTT
746740 GGCCATATTG
Statistics
Matches: 1538, Mismatches: 18, Indels: 14
0.98 0.01 0.01
Matches are distributed among these distances:
197 488 0.32
198 332 0.22
199 679 0.44
200 39 0.03
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (199 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
AAAA
Found at i:745718 original size:396 final size:398
Alignment explanation
Indices: 744978--746739 Score: 3340
Period size: 396 Copynumber: 4.4 Consensus size: 398
744968 TTTAAATTAG
744978 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
745043 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
745108 CGACAC-TTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
*
745172 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGG
745237 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
745302 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGG
*
745367 GGAAAAAA
391 GAAAAAAA
745375 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
745440 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
745505 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTG-TTTCCATTCATTCT-GGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
*
745568 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGG
745633 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
745698 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGG
745763 GAAAAAAA
391 GAAAAAAA
*
745771 TATCGACACAAAC--TATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
745834 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
745899 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
*
745964 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCAAAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGG
746029 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
746093 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGG
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGG
746158 G-AAAAAA
391 GAAAAAAA
*
746165 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
746230 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
746295 CGATACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
746360 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGG
196 AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGG
746425 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
261 TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
** *
746490 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTTAATTCATTCTGA
326 GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGG
*
746555 AAAAAAAA
391 GAAAAAAA
746563 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
746628 ATTGTACCGGTTAGATTAAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
746693 CGACACTTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
131 CGACAC-TTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTT
746740 GGCCATATTG
Statistics
Matches: 1341, Mismatches: 16, Indels: 14
0.98 0.01 0.01
Matches are distributed among these distances:
394 176 0.13
395 99 0.07
396 620 0.46
397 231 0.17
398 175 0.13
399 40 0.03
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (398 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGGAAA
AAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATCCTCTCATAAAACCGG
TATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTG
GGATCGACACTTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGG
GAAAAAAA
Found at i:746304 original size:15 final size:15
Alignment explanation
Indices: 746267--746304 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
746257 ATATTACATT
*
746267 ATACTTTTGGGTTCG
1 ATACTTTTGGGATCG
746282 ATGA-TTTTGGGATCG
1 AT-ACTTTTGGGATCG
746297 ATACTTTT
1 ATACTTTT
746305 TATATATGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
14 1 0.05
15 18 0.90
16 1 0.05
ACGTcount: A:0.18, C:0.11, G:0.24, T:0.47
Consensus pattern (15 bp):
ATACTTTTGGGATCG
Found at i:746904 original size:19 final size:19
Alignment explanation
Indices: 746858--746906 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
746848 TTATATTCAC
*
746858 ATACAAAAATATAAATCGT
1 ATACAAAATTATAAATCGT
*
746877 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
746896 ATACAAAATTA
1 ATACAAAATTA
746907 ACTCGACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:748735 original size:33 final size:33
Alignment explanation
Indices: 748698--748763 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
748688 CATCTTAATA
*
748698 TCACCCCTTAACACCGAAACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
***
748731 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCGAAACTTCTTTCACCACT
748764 CCATCTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.45, G:0.02, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCGAAACTTCTTTCACCACT
Found at i:748837 original size:21 final size:21
Alignment explanation
Indices: 748813--748861 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
748803 AGTGTATCTT
* *
748813 CGACTCTCTCGAGTTTCTCTA
1 CGACTCTATCAAGTTTCTCTA
** *
748834 CGACTAGATCAAGTTTCTCTT
1 CGACTCTATCAAGTTTCTCTA
748855 CGACTCT
1 CGACTCT
748862 TGATTGTCTT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.18, C:0.31, G:0.14, T:0.37
Consensus pattern (21 bp):
CGACTCTATCAAGTTTCTCTA
Found at i:751137 original size:19 final size:19
Alignment explanation
Indices: 751082--751128 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 19
751072 ATCCGGTATC
751082 ATTTTACCGGTTTTATCAT
1 ATTTTACCGGTTTTATCAT
751101 -TTTGATACCGGTTTTATCAT
1 ATTT--TACCGGTTTTATCAT
751121 ATTTTACC
1 ATTTTACC
751129 TGTTATATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 3 0.12
19 4 0.16
20 15 0.60
21 3 0.12
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.51
Consensus pattern (19 bp):
ATTTTACCGGTTTTATCAT
Found at i:756639 original size:23 final size:23
Alignment explanation
Indices: 756592--756654 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
756582 TAAAACCCTT
*
756592 CGAGCTTGAATTGAGCT-AAAAA
1 CGAGCTTGAATCGAGCTCAAAAA
756614 CGAGCTTGAATCGAGCTCAAAAA
1 CGAGCTTGAATCGAGCTCAAAAA
*
756637 CGAGCTTCAATCGAGCTC
1 CGAGCTTGAATCGAGCTC
756655 TTGAATTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
22 16 0.42
23 22 0.58
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (23 bp):
CGAGCTTGAATCGAGCTCAAAAA
Found at i:767083 original size:23 final size:24
Alignment explanation
Indices: 767037--767083 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
767027 AAATTTAAAC
*
767037 TCAATCCCTAAATCTCAAATTATA
1 TCAAACCCTAAATCTCAAATTATA
*
767061 TCAAACCCTAAA-CTTAAATTATA
1 TCAAACCCTAAATCTCAAATTATA
767084 AACCCACCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (24 bp):
TCAAACCCTAAATCTCAAATTATA
Found at i:767178 original size:17 final size:19
Alignment explanation
Indices: 767133--767183 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
767123 ACCGGCGACG
*
767133 GCCTGGCATCATCGA-ATA
1 GCCTAGCATCATCGACATA
*
767151 GCCTCGCATCATCGACA-A
1 GCCTAGCATCATCGACATA
767169 -CCTAGCATCATCGAC
1 GCCTAGCATCATCGAC
767184 TGGCCCCTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
17 14 0.47
18 15 0.50
19 1 0.03
ACGTcount: A:0.27, C:0.35, G:0.18, T:0.20
Consensus pattern (19 bp):
GCCTAGCATCATCGACATA
Found at i:770117 original size:20 final size:19
Alignment explanation
Indices: 770094--770140 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
770084 CGATATACCA
770094 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
770114 GGTAATAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
770134 GGTAAAA
1 GGTAAAA
770141 CGTTACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:770228 original size:181 final size:181
Alignment explanation
Indices: 769882--770354 Score: 696
Period size: 181 Copynumber: 2.6 Consensus size: 181
769872 GATCCAAATT
* * *
769882 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTATAGAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATA-AAATGATA
* * * * * *
769947 AAACCGGTCAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGAAACTTC
65 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAGGATCGAAACTTC
* * *
770012 GTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTTA
130 GTGAATTTAAAAGAGAAGCAGTTATAAAGCCTATAAAGTGTCGATACTTTAA
*
770064 AAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAAACCGGTAATAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGT-ATAAAATGATA
* * *
770129 AAACCGGTAAAACGTTACCGGATATATTAAAAGTGTCGATACTTT-ATATAAGGATCGACACTTT
65 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAGGATCGAAACTTC
** *
770193 GTGAATTTAAAAGAGAAGCAGTTATAGCGCCTATAATGTGTCGATACTTTAA
130 GTGAATTTAAAAGAGAAGCAGTTATAAAGCCTATAAAGTGTCGATACTTTAA
* * *
770245 AAAAATATATCGATCCACAATGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAT-AAAATGATA
* *
770310 AAACCGGTAAAATGATACCGGATATATTGAAAGTGTCGATACTTT
65 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTT
770355 CTTAAGTACG
Statistics
Matches: 264, Mismatches: 25, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
180 2 0.01
181 163 0.62
182 96 0.36
183 3 0.01
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (181 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATAAAATGATAA
AACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAGGATCGAAACTTCG
TGAATTTAAAAGAGAAGCAGTTATAAAGCCTATAAAGTGTCGATACTTTAA
Found at i:770289 original size:20 final size:19
Alignment explanation
Indices: 770263--770321 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 19
770253 ATCGATCCAC
* *
770263 AATGATATAACAGGTAAAA
1 AATGATAAAACCGGTAAAA
*
770282 ATATGATAAAACCGGTATCAA
1 A-ATGATAAAACCGGTA-AAA
770303 AATGATAAAACCGGTAAAA
1 AATGATAAAACCGGTAAAA
770322 TGATACCGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 3 0.09
20 28 0.82
21 3 0.09
ACGTcount: A:0.54, C:0.10, G:0.15, T:0.20
Consensus pattern (19 bp):
AATGATAAAACCGGTAAAA
Found at i:770323 original size:17 final size:19
Alignment explanation
Indices: 770284--770326 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
770274 AGGTAAAAAT
770284 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
770304 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
770321 ATGATA
1 ATGATA
770327 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:772595 original size:21 final size:21
Alignment explanation
Indices: 772548--772600 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
772538 AAGACAATCA
* *
772548 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTCGAG
** *
772569 CTAGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
772590 AGAGTCGAAGA
1 AGAGTCGAAGA
772601 TACACTTGAG
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.13, G:0.30, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTCGAG
Found at i:772688 original size:33 final size:33
Alignment explanation
Indices: 772646--772711 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
772636 AAATAGATGG
772646 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
772679 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
772712 TATTAAGATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.30, C:0.00, G:0.47, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:774526 original size:19 final size:19
Alignment explanation
Indices: 774502--774550 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
774492 AATGTAGGGT
774502 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
774521 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
774540 TATTTTTGTAT
1 TAATTTTGTAT
774551 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:775140 original size:199 final size:199
Alignment explanation
Indices: 774659--775818 Score: 2178
Period size: 199 Copynumber: 5.8 Consensus size: 199
774649 GGCAAATTTA
* * *
774659 CCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAAAAACATCGAAAACCAAAAGTATAA
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AACCCAAAAGTATAA
* *
774724 TGTAATATGTAATTTTTCAATCTAACCGGTACAAGTCTACCGGTTTTATGAGAGAATATGTCTAA
65 TGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAA
774789 ATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTTCCAGAATGAATGGAAAACAGG
130 ATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTTCCAGAATGAATGGAAAACAGG
774854 GTGCAC
194 GTGCAC
*
774860 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
774925 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATGTCTAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAA
774990 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
775055 GCAC
196 GCAC
775059 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
775124 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTATAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAA
775189 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
775254 GCAC
196 GCAC
* *
775258 CAATAAAGTGTCGATCCATATATAAAAAGTATCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
775323 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAA
775388 TAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAATGGAAAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
775452 GCAC
196 GCAC
775456 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
* *
775521 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATATCTAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAA
775586 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
775651 GCAC
196 GCAC
775655 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
775720 GTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAA
775785 TAATGTGTCGACACTAATATAGTTTGTGTCGATA
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATA
775819 CTAATTTAAA
Statistics
Matches: 938, Mismatches: 20, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
198 194 0.21
199 587 0.63
200 111 0.12
201 46 0.05
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (199 bp):
CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAA
TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
GCAC
Found at i:775559 original size:397 final size:398
Alignment explanation
Indices: 774659--775818 Score: 2178
Period size: 397 Copynumber: 2.9 Consensus size: 398
774649 GGCAAATTTA
* * *
774659 CCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAAAAACATCGAAAACCAAAAGTATAA
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AACCCAAAAGTATAA
* *
774724 TGTAATATGTAATTTTTCAATCTAACCGGTACAAGTCTACCGGTTTTATGAGAGAATATGTCTAA
65 TGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAA
774789 ATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTTCCAGAATGAATGGAAAACAGG
130 ATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTTCCAGAATGAATGGAAAACAGG
*
774854 GTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGAAAATCATCGAACCCAAAAG
194 GTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAG
*
774919 TATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATG
259 TATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATG
774984 TCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAA
324 TCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAA
775049 CAGGGTGCAC
389 CAGGGTGCAC
775059 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
*
775124 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTATAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAA
775189 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
* *
775254 GCACCAATAAAGTGTCGATCCATATATAAAAAGTATCGATCCCAAAATCATCGAACCCAAAAGTA
196 GCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
775319 TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTC
261 TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTC
775384 TAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTTCCAGAATGAATGGAAAACA
326 TAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACA
775448 GGGTGCAC
391 GGGTGCAC
775456 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
1 CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
* *
775521 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGATAATATATCTAAA
66 GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAA
775586 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
131 TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
775651 GCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
196 GCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
*
775716 TAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAATATGTC
261 TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTC
775781 TAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
326 TAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
775819 CTAATTTAAA
Statistics
Matches: 744, Mismatches: 16, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
397 391 0.53
398 195 0.26
399 111 0.15
400 47 0.06
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (398 bp):
CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAAT
GTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTCTAAA
TAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACAGGGT
GCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTA
TAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAATATGTC
TAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCAGAATGAATGGAAAACA
GGGTGCAC
Found at i:777304 original size:6 final size:6
Alignment explanation
Indices: 777280--777371 Score: 58
Period size: 6 Copynumber: 15.3 Consensus size: 6
777270 AGCGGTCGCA
* * * ** * *
777280 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATTAT GACGAT GAAGCT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
** * * * * *
777328 GGCGAT GAAGAT GATGAC GATGAT GATGAT GATGAT GAAGAT GA
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GA
777372 TGATCCAAAC
Statistics
Matches: 66, Mismatches: 20, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
6 66 1.00
ACGTcount: A:0.37, C:0.08, G:0.34, T:0.22
Consensus pattern (6 bp):
GAAGAT
Found at i:777334 original size:36 final size:36
Alignment explanation
Indices: 777283--777359 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
777273 GGTCGCAGAA
* *
777283 GATGAAGCTGACGATGAAGATGACGATGATTATGAC
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
* * *
777319 GATGAAGCTGGCGATGAAGATGATGACGATGATGAT
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
777355 GATGA
1 GATGA
777360 TGATGAAGAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.35, C:0.09, G:0.34, T:0.22
Consensus pattern (36 bp):
GATGAAGCTGACGATGAAGATGACGACGATGATGAC
Found at i:777352 original size:3 final size:3
Alignment explanation
Indices: 777331--777375 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
777321 TGAAGCTGGC
* * *
777331 GAT GAA GAT GAT GAC GAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
777376 CCAAACAAGT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.38, C:0.02, G:0.33, T:0.27
Consensus pattern (3 bp):
GAT
Found at i:777375 original size:12 final size:12
Alignment explanation
Indices: 777283--777371 Score: 79
Period size: 12 Copynumber: 7.4 Consensus size: 12
777273 GGTCGCAGAA
*
777283 GATGAAGCTGAC
1 GATGAAGATGAC
777295 GATGAAGATGAC
1 GATGAAGATGAC
**
777307 GATGATTATGAC
1 GATGAAGATGAC
* *
777319 GATGAAGCTGGC
1 GATGAAGATGAC
*
777331 GATGAAGATGAT
1 GATGAAGATGAC
* * *
777343 GACGATGATGAT
1 GATGAAGATGAC
* *
777355 GATGATGATGAA
1 GATGAAGATGAC
777367 GATGA
1 GATGA
777372 TGATCCAAAC
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 63 1.00
ACGTcount: A:0.36, C:0.08, G:0.34, T:0.22
Consensus pattern (12 bp):
GATGAAGATGAC
Found at i:777375 original size:18 final size:18
Alignment explanation
Indices: 777280--777371 Score: 67
Period size: 18 Copynumber: 5.1 Consensus size: 18
777270 AGCGGTCGCA
*
777280 GAAGATGAAGCTGACGAT
1 GAAGATGAAGATGACGAT
* **
777298 GAAGATGACGATGATTAT
1 GAAGATGAAGATGACGAT
* * *
777316 GACGATGAAGCTGGCGAT
1 GAAGATGAAGATGACGAT
* * *
777334 GAAGATGATGACGATGAT
1 GAAGATGAAGATGACGAT
* * *
777352 GATGATGATGATGAAGAT
1 GAAGATGAAGATGACGAT
777370 GA
1 GA
777372 TGATCCAAAC
Statistics
Matches: 55, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 55 1.00
ACGTcount: A:0.37, C:0.08, G:0.34, T:0.22
Consensus pattern (18 bp):
GAAGATGAAGATGACGAT
Found at i:778516 original size:20 final size:21
Alignment explanation
Indices: 778491--778533 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
778481 TTTTAATATA
*
778491 TTAT-AAAGTATCTATCCTTT
1 TTATAAAAGTATCTATACTTT
*
778511 TTATAAAAGTGTCTATACTTT
1 TTATAAAAGTATCTATACTTT
778532 TT
1 TT
778534 CCACTGTGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.30, C:0.12, G:0.07, T:0.51
Consensus pattern (21 bp):
TTATAAAAGTATCTATACTTT
Found at i:779151 original size:183 final size:182
Alignment explanation
Indices: 778841--779326 Score: 855
Period size: 183 Copynumber: 2.7 Consensus size: 182
778831 TTCAACATAT
* *
778841 TATAAATATACCGGTTTTTTGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATCTTGTG
1 TATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTG
* * *
778906 TCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCAATACATTGTTAAAAAGTGTCGACATTT
66 TCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATT-TAAAAAAGTATCGACATTT
*
778971 ACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAACCGG
130 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGG
779024 TATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTG
1 TATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTG
*
779089 TCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAAAAGTATCGACATTT
66 TCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATAC-ATTTAAAAAAGTATCGACATTT
*
779154 ACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAACCGG
130 ACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGG
* *
779207 TATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTATAATATTGTG
1 TATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTG
779272 TCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGT
66 TCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATA-CATTTAAAAAAGT
779327 GTCGGTAATT
Statistics
Matches: 290, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
183 286 0.99
184 4 0.01
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.34
Consensus pattern (182 bp):
TATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTG
TCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTTAAAAAAGTATCGACATTTA
CACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGG
Found at i:781830 original size:25 final size:25
Alignment explanation
Indices: 781796--781860 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
781786 TTATCATTAA
781796 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
****
781821 ATTTAGGTATGTTTGTTAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
781846 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
781861 TCTTTTGAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:782183 original size:22 final size:22
Alignment explanation
Indices: 782138--782183 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
782128 ATTACATAAC
**
782138 TTTTAAAAAAAGTATCGATTCT
1 TTTTAAAAAAAGTATCGACACT
* *
782160 TTTTATAAAAAGTATGGACACT
1 TTTTAAAAAAAGTATCGACACT
782182 TT
1 TT
782184 CAATATAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (22 bp):
TTTTAAAAAAAGTATCGACACT
Found at i:782232 original size:23 final size:23
Alignment explanation
Indices: 782201--782273 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
782191 ATAGGTAAAC
*
782201 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
782224 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
782247 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
782270 ATAT
1 ATAT
782274 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:782720 original size:18 final size:18
Alignment explanation
Indices: 782699--782735 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
782689 GTAATTGGAG
782699 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
782717 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
782735 T
1 T
782736 ATATTTCGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:783034 original size:39 final size:39
Alignment explanation
Indices: 782991--783077 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
782981 TCCGATGCTC
*
782991 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
* *
783030 ATCAAAATTCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
783069 ATCAAAATC
1 ATCAAAATC
783078 TACAACTTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:783519 original size:23 final size:23
Alignment explanation
Indices: 783488--783560 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
783478 ATAGGTAAAC
*
783488 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
783511 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
783534 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
783557 ATAT
1 ATAT
783561 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:783747 original size:29 final size:29
Alignment explanation
Indices: 783704--783769 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 29
783694 GTTACGATAT
*
783704 ATATTATTATTAAAT-T-AAAAATTCTAAATA
1 ATATT-TTATAAAATATCAAAAA-TC-AAATA
783734 ATATTTTATAAAATATCAAAAATCAAATA
1 ATATTTTATAAAATATCAAAAATCAAATA
*
783763 ATTTTTT
1 ATATTTT
783770 GTGCAAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 19 0.59
30 8 0.25
31 5 0.16
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.44
Consensus pattern (29 bp):
ATATTTTATAAAATATCAAAAATCAAATA
Found at i:784064 original size:22 final size:23
Alignment explanation
Indices: 784029--784071 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
784019 TATTGTACTT
**
784029 TATAATATTTCCGGT-TAAATAA
1 TATAATATAACCGGTATAAATAA
784051 TATAATATAACCGGTATAAAT
1 TATAATATAACCGGTATAAAT
784072 TTTAACCGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.37
Consensus pattern (23 bp):
TATAATATAACCGGTATAAATAA
Found at i:791782 original size:13 final size:13
Alignment explanation
Indices: 791766--791816 Score: 75
Period size: 13 Copynumber: 3.9 Consensus size: 13
791756 CATTAGCTGG
*
791766 TTTGATCAATTGA
1 TTTGATTAATTGA
791779 TTTGATTAATTGA
1 TTTGATTAATTGA
**
791792 TTTGAGAAATTGA
1 TTTGATTAATTGA
791805 TTTGATTAATTG
1 TTTGATTAATTG
791817 TTTATAGTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.31, C:0.02, G:0.18, T:0.49
Consensus pattern (13 bp):
TTTGATTAATTGA
Found at i:794059 original size:42 final size:43
Alignment explanation
Indices: 793989--794169 Score: 220
Period size: 43 Copynumber: 4.2 Consensus size: 43
793979 TTGAGAACCA
* * * * * *
793989 AAACGCCGCCATAGTTCAAGATCTATAGCGGCATTTTTGGATC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGAAC
* * *
794032 AAACGCCGC-AAAGGTCGATATCTATAGCAGCGTTTTTAGAAC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGAAC
* * * *
794074 AAACGCCTCAAAAAGTCAAGATCTATAGCGGCGTTTATGGAAC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGAAC
*
794117 AAACGCCACAAAAGGTCGAGATCTATAGCGGCGTTTTTGGATAC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGA-AC
794161 AAACGCCGC
1 AAACGCCGC
794170 TAATTACCAT
Statistics
Matches: 116, Mismatches: 20, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
42 33 0.28
43 73 0.63
44 10 0.09
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.23
Consensus pattern (43 bp):
AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGAAC
Found at i:794093 original size:85 final size:87
Alignment explanation
Indices: 794004--794167 Score: 251
Period size: 85 Copynumber: 1.9 Consensus size: 87
793994 CCGCCATAGT
* * * *
794004 TCAAGATCTATAGCGGCATTTTTGGATCAAACGCCGC-AAAGGTCGATATCTATAGCAGCGTTTT
1 TCAAGATCTATAGCGGCATTTATGGAACAAACGCCACAAAAGGTCGAGATCTATAGCAGCGTTTT
794068 TAGA-ACAAACGCCTCAAAAAG
66 TAGATACAAACGCCTCAAAAAG
* *
794089 TCAAGATCTATAGCGGCGTTTATGGAACAAACGCCACAAAAGGTCGAGATCTATAGCGGCGTTTT
1 TCAAGATCTATAGCGGCATTTATGGAACAAACGCCACAAAAGGTCGAGATCTATAGCAGCGTTTT
*
794154 TGGATACAAACGCC
66 TAGATACAAACGCC
794168 GCTAATTACC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
85 33 0.47
86 28 0.40
87 9 0.13
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (87 bp):
TCAAGATCTATAGCGGCATTTATGGAACAAACGCCACAAAAGGTCGAGATCTATAGCAGCGTTTT
TAGATACAAACGCCTCAAAAAG
Found at i:797633 original size:40 final size:41
Alignment explanation
Indices: 797498--797815 Score: 248
Period size: 40 Copynumber: 7.9 Consensus size: 41
797488 GCGTTTGTAT
*
797498 AAAAACGCCACTAAAGTACAAG--TATAGCGGCGTTTGTAAAC
1 AAAAACGCCACTAAAGTACGAGTCTATAGCGGCG-TT-TAAAC
* * * **
797539 AAAAACGCCA-TAAAAGAATGAGTCTTTAGCGGCGTTTGTA-
1 AAAAACGCCACT-AAAGTACGAGTCTATAGCGGCGTTTAAAC
797579 AAAAACG---CTAAAGTACGAGT-TAT-GCGGCGTTATAAAC
1 AAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTT-TAAAC
* * *
797616 AAAAACGCCACTAAAGTACGATTCTATAGCGGCGTTTGAAT
1 AAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTAAAC
* * ** *
797657 AAAAACGCCACTAAAGTATGAGT-TATAGTGGCGTTTTTAT
1 AAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTAAAC
* * * * * * *
797697 ACAAACGCCACTACAGTACGAGTATAACATC-GCTTTTATAAA
1 AAAAACGCCACTAAAGTACGAGTCT-ATAGCGGCGTTTA-AAC
** *
797739 AAAAACGCCACTAAAGTACGAGTCT-TAGCGGCGTTTGTAT
1 AAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTAAAC
* *
797779 AAAAACGCTCA-TAAAGTATGATTCTATAGCGGCGTTT
1 AAAAACGC-CACTAAAGTACGAGTCTATAGCGGCGTTT
797816 GTGTAAAAAT
Statistics
Matches: 220, Mismatches: 40, Indels: 34
0.75 0.14 0.12
Matches are distributed among these distances:
35 8 0.04
36 4 0.02
37 16 0.07
38 1 0.00
40 77 0.35
41 70 0.32
42 35 0.16
43 9 0.04
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (41 bp):
AAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTAAAC
Found at i:797809 original size:41 final size:41
Alignment explanation
Indices: 797443--797878 Score: 344
Period size: 41 Copynumber: 10.8 Consensus size: 41
797433 CTTTAAATTT
* * * *
797443 GCGGCGTTTGTAAAATAAACG-CATTAAAGTACGAGTTTTTTA
1 GCGGCGTTTGTATAA-AAACGCCACTAAAGTACGAG-TCTATA
* *
797485 GTGGCGTTTGTATAAAAACGCCACTAAAGTACAAG--TATA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATA
* * * *
797524 GCGGCGTTTGTAAACAAAAACGCCA-TAAAAGAATGAGTCTTTA
1 GCGGCGTTTGT--ATAAAAACGCCACT-AAAGTACGAGTCTATA
797567 GCGGCGTTTGTA-AAAAACG---CTAAAGTACGAGT-TAT-
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATA
** * *
797602 GCGGCGTTATAAACAAAAACGCCACTAAAGTACGATTCTATA
1 GCGGCGTT-TGTATAAAAACGCCACTAAAGTACGAGTCTATA
* *
797644 GCGGCGTTTGAATAAAAACGCCACTAAAGTATGAGT-TATA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATA
* * * * * *
797684 GTGGCGTTTTTATACAAACGCCACTACAGTACGAGTATAACA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCT-ATA
* * * *
797726 TC-GCTTTTATAAAAAAAACGCCACTAAAGTACGAGTCT-TA
1 GCGGCGTTTGT-ATAAAAACGCCACTAAAGTACGAGTCTATA
* *
797766 GCGGCGTTTGTATAAAAACGCTCA-TAAAGTATGATTCTATA
1 GCGGCGTTTGTATAAAAACGC-CACTAAAGTACGAGTCTATA
* * * * *
797807 GCGGCGTTTGTGTAAAAATGCAACTATAGTACTG-GTCTTTA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTAC-GAGTCTATA
* * * *
797848 GCGGCATTTGTATACAAACACCACTATAGTA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTA
797879 AGATCTTGTG
Statistics
Matches: 316, Mismatches: 56, Indels: 45
0.76 0.13 0.11
Matches are distributed among these distances:
35 8 0.03
36 4 0.01
37 16 0.05
38 1 0.00
39 13 0.04
40 78 0.25
41 123 0.39
42 59 0.19
43 14 0.04
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (41 bp):
GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATA
Done.