genome.fa.s827.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000827.1 Hibiscus syriacus cultivar Beakdansim tig00001601_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101729

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4179--4225	24	2.0	23	83	4	58	63	4	23	8	1.40
12551--12598	20	2.4	20	89	0	78	41	20	0	37	1.53
14256--14337	28	2.8	31	82	14	95	39	14	2	43	1.59
19402--19462	32	1.9	32	82	0	77	27	19	14	37	1.91
20737--20808	30	2.3	30	90	4	108	48	16	9	25	1.76
23760--23785	13	2.0	13	100	0	52	46	7	15	30	1.74
24634--24701	36	1.9	35	82	8	84	41	2	5	50	1.42
28933--29047	60	1.9	60	82	7	144	33	16	15	33	1.91
29902--29940	15	2.6	15	95	0	69	35	0	7	56	1.28
35542--35643	30	3.4	30	75	14	102	40	7	10	41	1.69
39942--40171	111	2.1	111	96	0	424	39	12	11	36	1.80
40381--40460	41	2.0	41	85	5	108	32	32	10	25	1.89
44538--44582	18	2.5	18	100	0	90	40	24	15	20	1.91
46157--46224	31	2.2	31	94	0	118	33	11	20	33	1.89
46213--46288	31	2.5	31	93	0	125	34	27	5	32	1.79
46902--46944	18	2.5	17	84	3	50	39	0	2	58	1.11
47750--47788	14	2.8	14	84	0	51	35	28	12	23	1.91
50768--50796	2	14.5	2	100	0	58	51	0	0	48	1.00
50911--50949	21	1.9	20	94	5	69	38	20	10	30	1.86
60073--61033	490	2.0	486	91	1	1541	35	11	13	39	1.81
61126--61226	31	3.4	29	81	6	105	43	13	6	35	1.71
61323--61375	28	1.9	28	92	3	90	49	7	3	39	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61333--61393	26	2.3	27	85	5	79	57	4	3	34	1.36
61322--61380	28	2.2	27	85	11	86	45	8	3	42	1.51
61645--61673	13	2.2	13	100	0	58	20	24	24	31	1.98
62757--62801	23	2.0	23	82	8	56	48	15	22	13	1.79
63627--64000	43	8.7	43	83	1	412	34	18	21	25	1.96
63613--64000	86	4.5	86	84	1	467	34	18	21	25	1.96
63615--63997	128	3.0	128	81	2	437	34	18	21	25	1.96
64984--65086	32	3.2	33	83	5	104	31	1	0	66	1.02
65014--65073	23	2.6	23	79	12	70	30	0	0	70	0.88
65002--65090	26	3.4	25	79	10	90	33	0	0	66	0.92
65007--65066	20	2.9	20	81	13	77	30	0	0	70	0.88
64986--65074	3	30.0	3	78	10	94	30	2	0	67	1.03
65444--65481	20	1.9	20	88	0	58	28	28	23	18	1.98
66478--66515	19	2.1	17	90	9	58	52	0	0	47	1.00
66479--66610	67	2.0	66	79	11	144	43	2	2	51	1.26
66699--66741	15	2.9	16	83	13	56	44	0	0	55	0.99
67153--67528	21	17.6	21	65	17	114	23	22	21	32	1.98
67126--67297	90	1.9	90	83	9	226	23	22	20	33	1.97
67113--67400	111	2.6	111	95	0	531	24	23	20	31	1.98
67418--67553	42	3.3	42	93	2	231	20	19	24	35	1.96
67478--67549	21	3.5	20	68	21	58	19	20	22	37	1.94
68283--68354	21	3.4	21	70	14	76	37	22	19	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68279--68374	42	2.3	42	92	0	165	35	23	18	21	1.96
68304--68374	21	3.4	21	67	21	58	33	26	18	21	1.96
69146--69200	21	2.6	21	97	0	101	14	23	41	20	1.89
69452--69675	21	10.6	21	81	10	144	35	22	20	21	1.96
69474--69605	42	3.1	42	79	8	178	39	18	19	22	1.92
69495--69629	63	2.1	63	91	0	225	36	20	20	22	1.95
69451--69657	84	2.4	84	89	4	310	35	21	20	22	1.96
69495--69648	63	2.4	62	87	4	193	35	22	20	22	1.96
71574--71618	20	2.2	21	88	4	65	57	2	2	37	1.23
73020--73119	3	33.7	3	87	2	139	67	0	1	32	0.98
73274--75772	119	21.2	119	97	0	4452	28	20	14	37	1.91
76301--76355	22	2.5	22	96	0	101	36	14	14	34	1.87
78988--79252	83	3.2	83	93	1	451	36	21	13	27	1.92
84149--84200	14	3.6	14	81	2	50	51	7	17	23	1.70
85785--85830	17	2.8	17	78	12	51	73	2	0	23	0.94
86517--86561	20	2.2	21	88	4	65	57	2	2	37	1.23
87909--88000	3	31.7	3	84	6	127	65	0	1	33	1.00
88974--89746	182	4.3	181	86	5	1062	43	12	15	28	1.84
90179--90253	19	3.9	19	82	0	87	46	4	17	32	1.66
91535--91589	24	2.5	22	77	16	60	41	1	7	49	1.41
91820--91869	9	5.6	9	87	0	73	32	6	56	6	1.48
91820--91878	27	2.2	27	84	0	73	30	6	54	8	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91821--91878	9	6.4	9	87	0	53	29	6	55	8	1.56
91820--91869	18	2.8	18	96	0	91	32	6	56	6	1.48
93795--93840	19	2.4	19	96	0	83	30	2	10	56	1.46
94210--95504	197	6.5	199	93	1	1965	41	15	14	28	1.86
96886--96928	21	2.0	21	90	0	68	23	16	25	34	1.95
98359--98411	24	2.2	24	89	0	79	39	1	11	47	1.50
98597--99263	200	3.3	200	87	4	954	40	17	13	28	1.87
99136--99433	162	1.8	163	93	0	517	41	17	13	27	1.86
98918--99629	360	2.0	360	89	2	1083	41	17	13	27	1.87
99593--99631	19	2.1	19	85	0	51	43	12	15	28	1.83
99286--99660	198	1.9	196	92	2	635	42	16	13	27	1.86
99646--100075	193	2.2	190	82	8	496	35	15	14	34	1.88

Tables:   1

The End!