genome.fa.s8276.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008276.1 Hibiscus syriacus cultivar Beakdansim tig00110934_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133379

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1047--1091	12	3.6	12	85	11	63	44	17	20	17	1.87
1053--1092	12	3.1	13	86	13	64	45	15	17	22	1.85
3355--3394	21	1.9	21	94	0	71	30	15	7	47	1.72
3389--3487	33	3.0	33	94	1	164	32	7	15	45	1.73
3473--3528	13	4.2	13	76	13	60	35	3	12	48	1.58
3920--3975	15	3.6	15	79	9	67	32	12	12	42	1.80
3939--3972	18	1.9	18	94	5	61	38	11	11	38	1.79
5127--5172	23	2.0	23	87	8	67	54	2	0	43	1.12
12004--12173	85	2.0	85	97	0	322	34	8	23	33	1.85
14508--14557	22	2.3	22	85	0	64	26	26	22	26	2.00
14832--14865	17	2.0	17	100	0	68	29	23	17	29	1.97
25625--25666	20	2.1	20	100	0	84	57	19	19	4	1.58
28668--28698	2	15.5	2	100	0	62	48	0	0	51	1.00
30966--31035	28	2.5	29	75	9	74	50	0	0	50	1.00
30921--31028	45	2.4	45	76	1	117	46	1	0	50	1.18
31270--31308	14	2.8	14	92	7	62	30	15	2	51	1.57
35738--35800	23	2.6	24	78	19	60	50	1	0	47	1.10
35772--35818	22	2.1	23	88	4	69	44	2	0	53	1.12
35766--35882	30	3.8	31	76	14	91	47	1	0	50	1.17
35784--35885	54	1.9	52	86	7	143	49	0	0	49	1.14
35935--36003	19	3.6	18	71	21	52	49	1	1	47	1.19
35998--36042	23	2.0	23	90	0	72	53	2	4	40	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39811--39892	29	2.8	29	94	1	137	32	14	9	42	1.79
44570--44651	29	2.8	29	94	1	137	32	14	9	42	1.79
48424--48467	22	2.0	22	100	0	88	40	13	0	45	1.44
57798--57833	16	2.3	16	90	4	56	36	5	5	52	1.48
58728--58759	2	16.0	2	100	0	64	50	0	0	50	1.00
59846--59883	19	2.1	19	90	5	60	52	0	7	39	1.31
59822--59891	24	3.0	24	76	19	67	51	1	8	38	1.41
60339--60424	43	2.0	42	82	6	102	52	4	18	24	1.64
60436--60508	21	3.5	21	66	14	51	57	4	13	24	1.54
60350--60508	42	3.8	41	84	5	176	53	6	16	23	1.65
61055--61079	6	4.2	6	100	0	50	64	0	0	36	0.94
61008--61068	24	2.3	26	75	16	72	47	0	3	49	1.18
68139--68164	2	13.0	2	100	0	52	50	0	0	50	1.00
68766--68943	63	2.8	63	87	0	250	28	20	14	35	1.92
68773--68935	31	5.2	32	68	17	108	28	21	14	34	1.93
69347--69453	53	2.0	52	89	5	162	37	9	6	46	1.62
77702--77851	69	2.2	69	81	0	174	35	42	12	10	1.77
77785--78016	54	4.1	55	84	8	290	35	36	16	10	1.84
79973--80038	30	2.2	30	83	2	80	53	3	3	40	1.32
81056--81130	31	2.5	31	88	2	107	40	14	26	18	1.90
81312--81359	20	2.7	17	77	20	53	29	0	6	64	1.18
81317--81356	20	2.0	20	85	4	55	35	0	7	57	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87833--87877	16	2.8	16	83	10	56	60	0	4	35	1.17
88797--88838	18	2.3	19	83	4	50	40	2	9	47	1.49
89032--89094	14	4.5	14	82	11	76	71	1	1	25	1.04
89026--89097	7	9.9	7	75	10	56	69	1	1	27	1.05
89020--89094	28	2.6	30	77	8	84	69	2	1	26	1.10
90438--90473	2	18.5	2	94	5	65	50	0	0	50	1.00
105299--105359	31	2.0	31	83	6	79	32	1	9	55	1.42
108585--108637	21	2.5	21	81	0	61	3	49	3	43	1.38
108612--108643	6	5.3	6	92	0	55	0	53	0	46	1.00
108606--108644	12	3.2	12	88	0	60	0	53	0	46	1.00
108602--108644	21	2.0	21	90	0	68	0	53	0	46	1.00
113126--113171	24	1.9	25	91	8	78	47	0	13	39	1.42
113126--113180	23	2.4	22	85	14	67	43	1	16	38	1.58
113557--113630	30	2.5	30	100	0	148	43	9	10	36	1.72
117500--117555	28	2.0	28	85	0	76	37	19	12	30	1.89
118612--118645	2	17.0	2	100	0	68	50	0	0	50	1.00
125487--125546	29	2.1	28	90	3	93	50	8	11	30	1.68
125487--125557	29	2.4	29	86	4	81	47	7	12	32	1.68
133211--133263	9	6.4	9	82	12	53	0	5	16	77	0.96
133229--133276	12	3.8	12	78	10	51	0	2	12	85	0.69
133227--133285	20	2.9	21	80	10	77	0	1	13	84	0.69
133218--133286	31	2.2	30	90	10	104	0	2	15	81	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133227--133281	10	5.2	10	80	20	67	0	1	12	85	0.68

Tables:   1

The End!