genome.fa.s8277.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008277.1 Hibiscus syriacus cultivar Beakdansim tig00110936_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76893

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6057--6116	12	5.0	12	78	11	52	0	1	13	85	0.69
6048--6117	32	2.2	30	90	7	104	0	2	15	81	0.81
6057--6112	10	5.3	10	80	19	69	0	1	12	85	0.67
8504--8619	43	2.7	43	82	1	133	41	7	8	42	1.64
8884--8960	24	3.2	24	79	0	82	10	7	20	61	1.53
9828--9949	46	2.6	46	81	2	145	39	8	17	35	1.79
15918--16022	30	3.5	30	74	13	90	34	5	15	44	1.70
16642--16697	21	2.7	21	83	2	69	30	0	3	66	1.09
23615--23684	35	2.0	35	100	0	140	28	5	22	42	1.76
29234--29302	30	2.3	30	92	0	111	31	11	26	30	1.91
32395--32439	20	2.2	21	96	4	83	51	17	15	15	1.77
32402--32451	20	2.5	19	87	12	73	50	20	14	16	1.78
32780--32888	20	5.4	20	78	10	132	21	20	18	40	1.92
32780--32908	40	3.2	40	85	6	172	21	19	20	38	1.93
32780--33019	20	11.6	20	70	11	103	21	17	20	41	1.91
33736--33788	14	3.5	14	72	18	52	56	5	0	37	1.23
33735--33984	32	7.8	32	67	23	134	53	11	0	35	1.38
33830--33908	18	4.4	18	67	17	56	53	7	0	39	1.30
33847--33890	22	2.0	22	82	8	54	54	2	0	43	1.12
33808--34086	54	5.1	54	83	9	329	52	10	0	37	1.35
33857--33899	22	2.0	22	95	0	77	51	6	0	41	1.29
33859--33907	22	2.2	22	85	3	62	55	8	0	36	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33830--34034	112	1.8	112	94	0	365	53	10	0	35	1.36
33969--34071	22	4.5	22	71	7	89	52	8	0	38	1.33
33743--34058	134	2.4	130	83	11	380	52	11	0	35	1.38
33942--34131	54	3.8	49	84	12	180	52	6	0	40	1.28
33960--34116	69	2.3	67	86	5	210	52	5	0	41	1.25
34016--34154	45	3.4	43	78	12	150	51	2	0	46	1.16
34014--34131	15	7.5	15	82	13	148	52	2	0	44	1.14
35429--35463	3	11.7	3	100	0	70	34	0	0	65	0.93
39318--39362	23	2.0	23	95	0	81	37	11	28	22	1.88
48699--48726	2	14.0	2	100	0	56	0	50	0	50	1.00
53283--53428	73	2.0	73	100	0	292	26	15	23	35	1.94
53305--53421	36	3.1	39	60	20	95	25	15	23	35	1.94
53948--54044	35	2.7	36	82	7	126	28	1	25	44	1.61
69204--69245	18	2.3	18	95	0	75	28	19	33	19	1.96
69699--69736	16	2.4	16	86	4	51	60	0	7	31	1.25

Tables:   1

The End!