genome.fa.s828.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000828.1 Hibiscus syriacus cultivar Beakdansim tig00001602_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112029

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4238--4269	11	2.9	11	100	0	64	53	18	9	18	1.71
21525--21588	3	21.3	3	73	17	53	64	1	0	34	1.03
21522--21597	26	2.9	25	83	13	91	63	3	0	32	1.13
21524--21583	17	3.5	16	82	11	57	65	1	0	33	1.03
21588--21648	29	2.0	29	84	12	79	49	9	0	40	1.36
21621--21672	22	2.3	23	81	15	65	46	5	1	46	1.38
21595--21648	29	2.0	26	89	10	81	50	7	0	42	1.30
21704--21889	77	2.5	71	80	14	191	38	11	4	45	1.61
21666--21869	35	5.6	36	77	12	193	37	11	5	45	1.64
21869--21911	22	2.0	22	86	8	63	48	16	0	34	1.46
23941--23995	12	4.6	12	76	0	65	32	16	7	43	1.75
26939--27119	21	8.9	21	76	13	141	35	23	14	25	1.93
26939--27252	20	15.6	20	73	11	126	34	21	12	31	1.90
27237--27312	19	3.9	19	94	3	125	32	18	9	39	1.82
31725--31888	80	2.0	80	87	2	231	24	22	23	29	1.99
31826--31953	65	2.0	65	90	1	204	22	24	20	32	1.98
34634--34670	2	18.5	2	100	0	74	48	0	0	51	1.00
34718--34752	2	17.5	2	100	0	70	48	0	0	51	1.00
35259--35286	6	4.7	6	100	0	56	28	0	0	71	0.86
38694--39244	64	8.6	64	91	0	850	36	21	12	29	1.90
39255--39431	65	2.8	64	88	4	236	37	20	14	27	1.91
39391--39609	121	1.8	121	91	0	366	35	25	14	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39555--39664	32	3.4	32	74	9	123	36	30	12	20	1.90
39517--39983	66	7.4	66	72	14	313	36	25	13	23	1.92
39396--39796	187	2.1	187	91	0	640	36	26	13	23	1.92
39521--39639	34	3.6	34	71	8	118	38	26	13	21	1.90
39386--39988	308	2.0	308	91	0	972	35	25	14	24	1.93
39583--39917	121	2.8	121	91	0	544	36	26	14	23	1.93
39828--39936	34	3.3	33	69	15	98	35	23	11	28	1.91
40047--40341	85	3.5	86	89	3	436	35	22	18	23	1.95
42459--42504	20	2.3	20	79	17	60	13	2	4	80	0.95
42466--42504	20	2.0	20	90	10	62	10	0	5	84	0.76
42623--42681	18	3.4	16	81	9	64	18	13	1	66	1.34
43531--43583	18	2.9	18	100	0	106	39	0	11	49	1.39
47949--48186	128	1.9	123	86	4	332	20	17	15	46	1.84
52286--52424	26	5.7	25	75	17	116	74	8	14	2	1.18
52303--52434	21	5.9	22	72	21	114	74	8	15	2	1.15
52298--52421	11	10.3	12	73	23	93	74	8	15	2	1.16
52306--52447	27	5.3	26	75	12	112	74	8	14	2	1.14
52339--52424	25	3.2	25	77	18	86	72	8	16	3	1.23
52401--52456	19	3.0	19	85	12	64	71	10	16	1	1.22
53534--53889	4	89.0	4	100	0	712	50	25	0	25	1.50
54504--54625	35	3.4	35	79	7	113	32	19	11	36	1.88
54492--54628	36	3.8	36	77	10	120	35	18	11	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54837--54897	32	1.9	31	83	9	79	31	13	13	42	1.82
54856--54980	32	3.9	32	69	14	103	28	15	12	43	1.83
55077--55216	64	2.2	64	81	3	165	32	8	14	44	1.75
55373--55438	29	2.2	29	86	7	89	24	16	15	43	1.86
55458--55569	40	2.8	40	94	0	197	24	30	18	26	1.98
55632--55741	39	2.8	39	84	0	148	28	31	15	24	1.95
55445--55875	172	2.5	174	90	1	688	27	30	17	24	1.97
55692--56000	134	2.3	134	91	1	505	26	31	18	23	1.97
57240--57264	4	6.2	4	100	0	50	24	0	0	76	0.80
57201--57471	128	2.1	127	83	6	326	19	17	16	45	1.85
64452--64477	12	2.2	12	100	0	52	30	7	26	34	1.85
67040--67065	2	13.0	2	100	0	52	50	0	0	50	1.00
67135--67188	27	2.0	27	85	7	74	33	3	3	59	1.33
67150--67191	14	3.1	14	75	6	50	30	2	4	61	1.29
67416--67462	16	2.9	16	75	12	51	23	21	14	40	1.90
67934--67974	20	2.1	20	86	4	57	46	2	24	26	1.65
67900--68031	45	2.9	46	82	6	144	45	1	27	25	1.62
68461--68499	20	2.0	19	90	5	60	30	12	2	53	1.52
68581--68617	16	2.3	16	90	0	56	54	2	5	37	1.38
69160--69252	24	3.8	24	80	13	102	9	9	17	63	1.51
77864--77898	18	1.9	18	88	0	52	22	22	31	22	1.98
78190--78231	18	2.2	20	87	8	61	61	0	9	28	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84137--84171	17	2.1	17	94	0	61	51	0	0	48	1.00
84195--84290	47	2.0	48	89	2	149	39	18	0	41	1.51
88535--88581	2	23.5	2	100	0	94	48	0	0	51	1.00
101527--101562	18	2.0	18	100	0	72	55	16	0	27	1.42
104692--104728	18	2.1	18	89	0	56	37	0	40	21	1.54

Tables:   1

The End!