Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008282.1 Hibiscus syriacus cultivar Beakdansim tig00110944_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1335609
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 2 of 8
Found at i:214829 original size:24 final size:24
Alignment explanation
Indices: 214770--214830 Score: 97
Period size: 23 Copynumber: 2.6 Consensus size: 24
214760 TAAAACAACC
* *
214770 CCTCCCCTTTCCCCGACCTTTCTG
1 CCTCCCCCTTCCTCGACCTTTCTG
214794 CCT-CCCCTTCCTCGACCTTTCTG
1 CCTCCCCCTTCCTCGACCTTTCTG
214817 CCTCCCCCTTCCTC
1 CCTCCCCCTTCCTC
214831 CTCCCCGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
23 21 0.62
24 13 0.38
ACGTcount: A:0.03, C:0.57, G:0.07, T:0.33
Consensus pattern (24 bp):
CCTCCCCCTTCCTCGACCTTTCTG
Found at i:216029 original size:4 final size:4
Alignment explanation
Indices: 216020--216113 Score: 60
Period size: 4 Copynumber: 25.5 Consensus size: 4
216010 TAAAAATAAT
* * * *
216020 TATA TATA TATA TATA -ATA T-TA -ATA AATT TA-A TTTA AAT- TA-A
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * * *
216062 TATA TATA TATA TATA TATA TA-A TATT TATA TATT TA-A TTTA AATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
216108 TATA TA
1 TATA TA
216114 CTCGGCTCGA
Statistics
Matches: 67, Mismatches: 15, Indels: 16
0.68 0.15 0.16
Matches are distributed among these distances:
3 15 0.22
4 52 0.78
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TATA
Found at i:216031 original size:6 final size:6
Alignment explanation
Indices: 216020--216113 Score: 60
Period size: 6 Copynumber: 17.0 Consensus size: 6
216010 TAAAAATAAT
* * * *
216020 TATATA TATATA TATA-A TAT-TA -ATAAA TTTA-A TTTAAA T-TA-A
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
* * * *
216062 TATATA TATATA TATATA TATA-A TATTTA TATATT TA-ATT TAAATA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
216108 TATATA
1 TATATA
216114 CTCGGCTCGA
Statistics
Matches: 73, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
4 4 0.05
5 24 0.33
6 45 0.62
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TATATA
Found at i:216088 original size:48 final size:46
Alignment explanation
Indices: 216020--216113 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 46
216010 TAAAAATAAT
216020 TATATATATATATATAATATTAATAAATTTAATTTAAATTAATATATA
1 TATATATATATATATAATATTAATAAATTTAATTTAAA-T-ATATATA
* *
216068 TATATATATATATATAATATTTATATATTTAATTTAAATATATATA
1 TATATATATATATATAATATTAATAAATTTAATTTAAATATATATA
216114 CTCGGCTCGA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
46 7 0.16
47 1 0.02
48 36 0.82
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (46 bp):
TATATATATATATATAATATTAATAAATTTAATTTAAATATATATA
Found at i:216257 original size:25 final size:25
Alignment explanation
Indices: 216210--216258 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
216200 TCCCCGTAGC
* * *
216210 TTTTTAAGCGGGGACGGGTACGAGT
1 TTTTTAAACGGAGACGGGGACGAGT
*
216235 TTTTTAAACGGAGATGGGGACGAG
1 TTTTTAAACGGAGACGGGGACGAG
216259 GGGACCAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.24, C:0.10, G:0.39, T:0.27
Consensus pattern (25 bp):
TTTTTAAACGGAGACGGGGACGAGT
Found at i:217979 original size:21 final size:21
Alignment explanation
Indices: 217955--217995 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
217945 CACATCATCC
217955 ATCTCCATCGCATCTTTCATT
1 ATCTCCATCGCATCTTTCATT
* * *
217976 ATCTCTATCTCATTTTTCAT
1 ATCTCCATCGCATCTTTCAT
217996 CACAAGGTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.29, G:0.02, T:0.49
Consensus pattern (21 bp):
ATCTCCATCGCATCTTTCATT
Found at i:218583 original size:16 final size:16
Alignment explanation
Indices: 218537--218593 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
218527 ACTAGAATGT
218537 TTTGAAGGGAATTGAAA
1 TTTGAA-GGAATTGAAA
*
218554 TTTGTGAGGGAATTGAAA
1 -TT-TGAAGGAATTGAAA
*
218572 TTTGAAGGAATTAAAA
1 TTTGAAGGAATTGAAA
*
218588 TATGAA
1 TTTGAA
218594 TCTAAAACTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
16 17 0.50
17 2 0.06
18 12 0.35
19 3 0.09
ACGTcount: A:0.42, C:0.00, G:0.26, T:0.32
Consensus pattern (16 bp):
TTTGAAGGAATTGAAA
Found at i:219199 original size:32 final size:33
Alignment explanation
Indices: 219135--219245 Score: 161
Period size: 32 Copynumber: 3.3 Consensus size: 33
219125 CTTAAACCGA
219135 ACCCGACCCGAATATCACACTTAAAAAAACCCG
1 ACCCGACCCGAATATCACACTTAAAAAAACCCG
*
219168 ACCCGACCCAAATATCACACTT-AAAAAACCCG
1 ACCCGACCCGAATATCACACTTAAAAAAACCCG
* *
219200 ACACGACCCGAATATCAAACTTTAAAAAAACCCG
1 ACCCGACCCGAATATCACAC-TTAAAAAAACCCG
*
219234 ACCAGAGCCCGA
1 ACCCGA-CCCGA
219246 TTTTTTTTTT
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
32 27 0.39
33 23 0.33
34 14 0.20
35 5 0.07
ACGTcount: A:0.43, C:0.35, G:0.10, T:0.12
Consensus pattern (33 bp):
ACCCGACCCGAATATCACACTTAAAAAAACCCG
Found at i:219980 original size:42 final size:42
Alignment explanation
Indices: 219774--220108 Score: 427
Period size: 42 Copynumber: 7.9 Consensus size: 42
219764 TGAGAACAAA
* * *
219774 AAACGCCGCAATAGGTCAAGATCTATAACGGCGTTTTTGGAAC
1 AAACGCCGCAAAAGGTC-ATATCTATAGCGGCGTTTTTGGAAC
* * * * * **
219817 AAATGCCGTAAAAGGTTGATATATATAGTGGCGTTTTTGGATT
1 AAACGCCGCAAAAGG-TCATATCTATAGCGGCGTTTTTGGAAC
*
219860 AAACGCCGCAAAAGGTCTATATCTATAGCGGCGTTTTTAGAAC
1 AAACGCCGCAAAAGGTC-ATATCTATAGCGGCGTTTTTGGAAC
* * *
219903 AAACGCCGCAAAAGGTCGATATCTATTGTGACGTTTTTGGAAC
1 AAACGCCGCAAAAGGTC-ATATCTATAGCGGCGTTTTTGGAAC
* *
219946 AAACGCCGCAAAAGGTCATATCTATAACGACGTTTTTGGAAC
1 AAACGCCGCAAAAGGTCATATCTATAGCGGCGTTTTTGGAAC
* * * *
219988 AAACGCCACAAAAGGTCAGATCTATAGCGACGTTTTTGTAAC
1 AAACGCCGCAAAAGGTCATATCTATAGCGGCGTTTTTGGAAC
* * *
220030 AAACGCCGCAAAAAGTCAGATCTATAGCGGCGTTTTTGTAAC
1 AAACGCCGCAAAAGGTCATATCTATAGCGGCGTTTTTGGAAC
220072 AAACGCCGCAAAAGGTCATATCTATAGCGGCGTTTTT
1 AAACGCCGCAAAAGGTCATATCTATAGCGGCGTTTTT
220109 TTATACAAAC
Statistics
Matches: 255, Mismatches: 35, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
42 135 0.53
43 119 0.47
44 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (42 bp):
AAACGCCGCAAAAGGTCATATCTATAGCGGCGTTTTTGGAAC
Found at i:224050 original size:30 final size:30
Alignment explanation
Indices: 224016--224181 Score: 137
Period size: 30 Copynumber: 5.6 Consensus size: 30
224006 TTATAATTAC
* **
224016 AAGGACCAAAATGGGAAAAATAGAAACTTA
1 AAGGACTAAAATAAGAAAAATAGAAACTTA
*
224046 AAGGACTAAAAT-AGTACAAACA-AG-AATTTA
1 AAGGACTAAAATAAG-A-AAA-ATAGAAACTTA
* *
224076 AAGGTCCAAAAT-AGAAAAATAGAAACTTA
1 AAGGACTAAAATAAGAAAAATAGAAACTTA
* * * * *
224105 AGGGACTAAAATAACAAAAAAAGACATTTA
1 AAGGACTAAAATAAGAAAAATAGAAACTTA
**
224135 AAGGACTAAAATATTAAAAATAGAAACTTA
1 AAGGACTAAAATAAGAAAAATAGAAACTTA
*
224165 AGGGACT-AAAT-AGAAAA
1 AAGGACTAAAATAAGAAAA
224182 TAAACATAAT
Statistics
Matches: 108, Mismatches: 22, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
27 1 0.01
28 9 0.08
29 20 0.19
30 72 0.67
31 5 0.05
32 1 0.01
ACGTcount: A:0.58, C:0.09, G:0.15, T:0.17
Consensus pattern (30 bp):
AAGGACTAAAATAAGAAAAATAGAAACTTA
Found at i:224114 original size:59 final size:59
Alignment explanation
Indices: 224016--224174 Score: 214
Period size: 59 Copynumber: 2.7 Consensus size: 59
224006 TTATAATTAC
* * *
224016 AAGGACCAAAATGGGAAAAATAGAAACTTAAAGGACTAAAATAGTAC-AAACAAGA-ATTTA
1 AAGGACCAAAAT-AGAAAAATAGAAACTTAAGGGACTAAAATA--ACAAAAAAAGACATTTA
*
224076 AAGGTCCAAAATAGAAAAATAGAAACTTAAGGGACTAAAATAACAAAAAAAGACATTTA
1 AAGGACCAAAATAGAAAAATAGAAACTTAAGGGACTAAAATAACAAAAAAAGACATTTA
* *
224135 AAGGACTAAAATATTAAAAATAGAAACTTAAGGGACTAAA
1 AAGGACCAAAATA-GAAAAATAGAAACTTAAGGGACTAAA
224175 TAGAAAATAA
Statistics
Matches: 89, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
57 2 0.02
58 7 0.08
59 44 0.49
60 36 0.40
ACGTcount: A:0.58, C:0.09, G:0.15, T:0.18
Consensus pattern (59 bp):
AAGGACCAAAATAGAAAAATAGAAACTTAAGGGACTAAAATAACAAAAAAAGACATTTA
Found at i:225524 original size:3 final size:3
Alignment explanation
Indices: 225516--225553 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
225506 ATAAAGTAAT
225516 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
225554 TTTTTGTAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:225939 original size:40 final size:42
Alignment explanation
Indices: 225833--225947 Score: 121
Period size: 40 Copynumber: 2.7 Consensus size: 42
225823 ATCTTTTGGG
* *
225833 AGGGTGATAACATGGTTCCTACATGATGAGGACGGTTGGTTATCT
1 AGGG-GATGACATGGTTCCTACGTGATGAGGACGGTTGG-T-TCT
* * *
225878 AGGGG-TGACACGGCTCTTACGTGATGAGGA-GGTCTGG-TC-
1 AGGGGATGACATGGTTCCTACGTGATGAGGACGGT-TGGTTCT
225917 AGGGGATGACATGGTTCCTACGTGATGAGGA
1 AGGGGATGACATGGTTCCTACGTGATGAGGA
225948 TGGCAGACCA
Statistics
Matches: 60, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
39 5 0.08
40 24 0.40
42 3 0.05
43 23 0.38
44 1 0.02
45 4 0.07
ACGTcount: A:0.23, C:0.15, G:0.37, T:0.26
Consensus pattern (42 bp):
AGGGGATGACATGGTTCCTACGTGATGAGGACGGTTGGTTCT
Found at i:225958 original size:134 final size:129
Alignment explanation
Indices: 225745--226054 Score: 372
Period size: 134 Copynumber: 2.4 Consensus size: 129
225735 TGATCCTCTA
* * * *
225745 AGGGTGACACGACACCTACGTGATGAGGAGATCTGGTCAGTGGATGACACGATTCCTACGCGATG
1 AGGGTGACACGGCTCCTACGTGATGAGGAGGTCTGGTCAGGGGATGACACGATTCCTACGCGATG
* * * * *
225810 AGGATGACAAACCATCTTTTGGGAGGGTGATAACAT-GGTTCCTACATG-ATGAGGACGGTTGGT
66 AGGATGACAAACCATCTTTAGGGA---TGATAAC-TCGGTTCCT--ATGAATCAGGACAGCTGAT
225873 TATCT
125 TATCT
* * * *
225878 AGGGGTGACACGGCTCTTACGTGATGAGGAGGTCTGGTCAGGGGATGACATGGTTCCTACGTGAT
1 A-GGGTGACACGGCTCCTACGTGATGAGGAGGTCTGGTCAGGGGATGACACGATTCCTACGCGAT
* *
225943 GAGGATGGCAGACCATCTTTAGGGATGATAACTCGGTTCCTATGCAATCAGGACAGCTGATTATC
65 GAGGATGACAAACCATCTTTAGGGATGATAACTCGGTTCCTATG-AATCAGGACAGCTGATTATC
226008 T
129 T
* * *
226009 AGGGTTACACGGCTCCTACGTTATGAGGAGGTCTGGTCGGGGGATG
1 AGGGTGACACGGCTCCTACGTGATGAGGAGGTCTGGTCAGGGGATG
226055 TAACATCCCC
Statistics
Matches: 154, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
129 3 0.02
130 42 0.27
131 31 0.20
133 1 0.01
134 77 0.50
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (129 bp):
AGGGTGACACGGCTCCTACGTGATGAGGAGGTCTGGTCAGGGGATGACACGATTCCTACGCGATG
AGGATGACAAACCATCTTTAGGGATGATAACTCGGTTCCTATGAATCAGGACAGCTGATTATCT
Found at i:226698 original size:18 final size:18
Alignment explanation
Indices: 226675--226745 Score: 72
Period size: 18 Copynumber: 3.8 Consensus size: 18
226665 TGAATATTTG
226675 TCCCGAAGGACCACTATA
1 TCCCGAAGGACCACTATA
*
226693 TCCCGAA-GAGCCACAGATTA
1 TCCCGAAGGA-CCAC-TA-TA
* * *
226713 TTCCGAAGAACCACTATG
1 TCCCGAAGGACCACTATA
226731 TCCCGAAGGACCACT
1 TCCCGAAGGACCACT
226746 GATAATCCCT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
17 2 0.05
18 25 0.60
19 2 0.05
20 12 0.29
21 1 0.02
ACGTcount: A:0.32, C:0.32, G:0.18, T:0.17
Consensus pattern (18 bp):
TCCCGAAGGACCACTATA
Found at i:234887 original size:21 final size:21
Alignment explanation
Indices: 234847--234885 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
234837 ATTTTTCTTT
234847 TTCTTTTTATTTCTATTTTCG
1 TTCTTTTTATTTCTATTTTCG
234868 TTCTTTTTATTT-TATTTT
1 TTCTTTTTATTTCTATTTT
234886 TCCTTGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.10, G:0.03, T:0.77
Consensus pattern (21 bp):
TTCTTTTTATTTCTATTTTCG
Found at i:236081 original size:15 final size:15
Alignment explanation
Indices: 236043--236086 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
236033 CTCTTTTAGT
*
236043 GAAAAAAAAACAAAA
1 GAAAAAAAGACAAAA
* *
236058 CAAAAAAAGAGAAAA
1 GAAAAAAAGACAAAA
236073 GAAAAAAAG-CAAAA
1 GAAAAAAAGACAAAA
236087 AAGCAAAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
14 4 0.17
15 20 0.83
ACGTcount: A:0.82, C:0.07, G:0.11, T:0.00
Consensus pattern (15 bp):
GAAAAAAAGACAAAA
Found at i:238249 original size:6 final size:6
Alignment explanation
Indices: 238242--238282 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
238232 CTGACTTCTT
* *
238242 CCTCTT CCTCTA CCTCTA CCTCTA CCTCTA CCTCTT CCTCT
1 CCTCTA CCTCTA CCTCTA CCTCTA CCTCTA CCTCTA CCTCT
238283 CTGGGTAGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.10, C:0.51, G:0.00, T:0.39
Consensus pattern (6 bp):
CCTCTA
Found at i:240177 original size:18 final size:18
Alignment explanation
Indices: 240146--240180 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
240136 ATTGAATATT
*
240146 TGTCCTGAAAGACCACTA
1 TGTCCCGAAAGACCACTA
*
240164 TGTCCCGAAGGACCACT
1 TGTCCCGAAAGACCACT
240181 GATAATCCCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (18 bp):
TGTCCCGAAAGACCACTA
Found at i:241697 original size:21 final size:21
Alignment explanation
Indices: 241672--241713 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
241662 CAAGAGAGAT
* *
241672 AAATTTGTTTCAAGGGAAACA
1 AAATTTATTTCAAGAGAAACA
241693 AAATTTATTTCAAGAGAAACA
1 AAATTTATTTCAAGAGAAACA
241714 TACTTAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.29
Consensus pattern (21 bp):
AAATTTATTTCAAGAGAAACA
Found at i:241849 original size:35 final size:36
Alignment explanation
Indices: 241774--241849 Score: 93
Period size: 35 Copynumber: 2.1 Consensus size: 36
241764 GGAAGACTGT
* * *
241774 CTCAAGTGAGACAAAGTTTGTTTTGAGAAAAACAAT
1 CTCAAGTGAGACAAACTTTGTTTTAAGAAAAACAAA
*
241810 CTCAAGTGAGATC-AACTTT-TTTTAAGTAAAACAAA
1 CTCAAGTGAGA-CAAACTTTGTTTTAAGAAAAACAAA
241845 CTCAA
1 CTCAA
241850 AATTTATTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
35 18 0.51
36 16 0.46
37 1 0.03
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.29
Consensus pattern (36 bp):
CTCAAGTGAGACAAACTTTGTTTTAAGAAAAACAAA
Found at i:241994 original size:37 final size:37
Alignment explanation
Indices: 241872--241994 Score: 162
Period size: 36 Copynumber: 3.4 Consensus size: 37
241862 AAAGGAAAAA
** * *
241872 TGTCTCAAGCGAGATGAAATTT-ATTTTGAGAGAAA-T
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAAGA-AAACT
* *
241908 TGTCTCAAGCGAGACAAAATTTGTTTATAGGAAAAC-
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAAGAAAACT
241944 TGTCTCAAGCGAGACAAAATTTGTTTTTAAGAAAACT
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAAGAAAACT
241981 TGTCTCAAGCGAGA
1 TGTCTCAAGCGAGA
241995 TGACCCTTTG
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
36 57 0.75
37 19 0.25
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (37 bp):
TGTCTCAAGCGAGACAAAATTTGTTTTTAAGAAAACT
Found at i:243204 original size:19 final size:20
Alignment explanation
Indices: 243180--243219 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
243170 TGTATTATTT
*
243180 TTTCTTTG-TTTTTTTTTTG
1 TTTCTTTGCTTTTTGTTTTG
243199 TTTCTTTGCTTTTTGTTTTG
1 TTTCTTTGCTTTTTGTTTTG
243219 T
1 T
243220 CCCTTGCTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.00, C:0.07, G:0.12, T:0.80
Consensus pattern (20 bp):
TTTCTTTGCTTTTTGTTTTG
Found at i:245408 original size:20 final size:20
Alignment explanation
Indices: 245365--245414 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
245355 CGGGTATCAA
* *
245365 TATCGACACCGAAGAGGTAG
1 TATCGATACCGAAGAGGAAG
245385 TATCGATACCGAAG-GGAAG
1 TATCGATACCGAAGAGGAAG
245404 CTATCGATACC
1 -TATCGATACC
245415 ATTTCAAAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (20 bp):
TATCGATACCGAAGAGGAAG
Found at i:245485 original size:22 final size:19
Alignment explanation
Indices: 245439--245509 Score: 79
Period size: 19 Copynumber: 3.5 Consensus size: 19
245429 TGCAAAAATG
245439 GTATCGATACCATAGTAGA
1 GTATCGATACCATAGTAGA
*
245458 GTATCGGTACCATAGTATAGTA
1 GTATCGATACCATAG--TAG-A
* *
245480 GTATCGATACCATGGTAGGG
1 GTATCGATACCATAGTA-GA
245500 GTATCGATAC
1 GTATCGATAC
245510 TATGGAGTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
19 14 0.32
20 12 0.27
21 4 0.09
22 14 0.32
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.28
Consensus pattern (19 bp):
GTATCGATACCATAGTAGA
Found at i:246045 original size:79 final size:79
Alignment explanation
Indices: 245914--246088 Score: 278
Period size: 79 Copynumber: 2.2 Consensus size: 79
245904 GAACAAATAA
* * * *
245914 ATAAAATAATAATGCACATGGGTACATTATTGGCATGTAAGGATGTCATAGCTGAAATGCATATG
1 ATAAAAGAATAATGCATATGGGTACATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
245979 GGTGCATTATCGAC
66 GGTGCATTATCGAC
**
245993 ATAAAAGAATAATGCATATGGGTGTATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
1 ATAAAAGAATAATGCATATGGGTACATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
* *
246058 GGTGGATTATCGGC
66 GGTGCATTATCGAC
246072 ATAAAAGAATAATGCAT
1 ATAAAAGAATAATGCAT
246089 GAAATTATGC
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 88 1.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (79 bp):
ATAAAAGAATAATGCATATGGGTACATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
GGTGCATTATCGAC
Found at i:246118 original size:20 final size:20
Alignment explanation
Indices: 246085--246162 Score: 66
Period size: 20 Copynumber: 3.6 Consensus size: 20
246075 AAAGAATAAT
**
246085 GCATGAAATTATGCATTAAG
1 GCATGAAAGGATGCATTAAG
*
246105 GCATGAAAGGATGCCATAACTAAAAT
1 GCATGAAAGGATG-CAT---T--AAG
*
246131 ACATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
246151 GCATGAAAGGAT
1 GCATGAAAGGAT
246163 ACCATAAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
20 24 0.52
21 3 0.07
22 1 0.02
24 1 0.02
25 3 0.07
26 14 0.30
ACGTcount: A:0.44, C:0.12, G:0.23, T:0.22
Consensus pattern (20 bp):
GCATGAAAGGATGCATTAAG
Found at i:246136 original size:46 final size:46
Alignment explanation
Indices: 246086--246190 Score: 165
Period size: 46 Copynumber: 2.3 Consensus size: 46
246076 AAGAATAATG
** * *
246086 CATGAAATTATGCATTAAGGCATGAAAGGATGCCATAACTAAAATA
1 CATGAAAGGATGCATTAAGGCATGAAAGGATACCATAAATAAAATA
*
246132 CATGAAAGGATGCATTAAGGCATGAAAGGATACCATAAATAAAATT
1 CATGAAAGGATGCATTAAGGCATGAAAGGATACCATAAATAAAATA
246178 CATGAAAGGATGC
1 CATGAAAGGATGC
246191 CATAAATAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 54 1.00
ACGTcount: A:0.46, C:0.12, G:0.20, T:0.22
Consensus pattern (46 bp):
CATGAAAGGATGCATTAAGGCATGAAAGGATACCATAAATAAAATA
Found at i:246142 original size:26 final size:26
Alignment explanation
Indices: 246106--246202 Score: 107
Period size: 26 Copynumber: 4.0 Consensus size: 26
246096 TGCATTAAGG
*
246106 CATGAAAGGATGCCATAACTAAAATA
1 CATGAAAGGATGCCATAAATAAAATA
**
246132 CATGAAAGGATG-CAT---T--AAGG
1 CATGAAAGGATGCCATAAATAAAATA
* *
246152 CATGAAAGGATACCATAAATAAAATT
1 CATGAAAGGATGCCATAAATAAAATA
246178 CATGAAAGGATGCCATAAATAAAAT
1 CATGAAAGGATGCCATAAATAAAAT
246203 GAAATTTAAC
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
20 13 0.22
21 3 0.05
22 1 0.02
24 1 0.02
25 3 0.05
26 38 0.64
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (26 bp):
CATGAAAGGATGCCATAAATAAAATA
Found at i:248419 original size:2 final size:2
Alignment explanation
Indices: 248412--248446 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
248402 GATGTCAGAA
248412 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
248447 GCTTTTATGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:250614 original size:20 final size:19
Alignment explanation
Indices: 250576--250615 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
250566 ATATCGATAT
* *
250576 CGAAGGGTAGTATCGATAC
1 CGAAGGGAAGTATCAATAC
250595 CGAAGGGAAGGTATCAATAC
1 CGAAGGGAA-GTATCAATAC
250615 C
1 C
250616 ATTTCAAAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.17
Consensus pattern (19 bp):
CGAAGGGAAGTATCAATAC
Found at i:250667 original size:19 final size:19
Alignment explanation
Indices: 250640--250728 Score: 106
Period size: 19 Copynumber: 4.5 Consensus size: 19
250630 TGCAAAAATG
250640 GTATCGATACCATAGTAGA
1 GTATCGATACCATAGTAGA
*
250659 GTATTGATACCATAGTAGA
1 GTATCGATACCATAGTAGA
*
250678 GTATCGGTACCATAGTATAGTA
1 GTATCGATACCATAG--TAG-A
* *
250700 GTATCGATACCATGGTAGGG
1 GTATCGATACCATAGTA-GA
250720 GTATCGATA
1 GTATCGATA
250729 TTATGGAGTC
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
19 31 0.52
20 11 0.18
21 4 0.07
22 14 0.23
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (19 bp):
GTATCGATACCATAGTAGA
Found at i:250691 original size:38 final size:40
Alignment explanation
Indices: 250640--250728 Score: 110
Period size: 41 Copynumber: 2.2 Consensus size: 40
250630 TGCAAAAATG
*
250640 GTATCGATACCATAG-TAG-AGTATTGATACCATAGTAGA
1 GTATCGATACCATAGATAGTAGTATCGATACCATAGTAGA
* * *
250678 GTATCGGTACCATAGTATAGTAGTATCGATACCATGGTAGGG
1 GTATCGATACCATAG-ATAGTAGTATCGATACCATAGTA-GA
250720 GTATCGATA
1 GTATCGATA
250729 TTATGGAGTC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
38 14 0.33
40 3 0.07
41 16 0.38
42 9 0.21
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (40 bp):
GTATCGATACCATAGATAGTAGTATCGATACCATAGTAGA
Found at i:251050 original size:34 final size:34
Alignment explanation
Indices: 251012--251189 Score: 212
Period size: 34 Copynumber: 4.9 Consensus size: 34
251002 CCATAGCTGA
251012 AATGCATATGGGTGCATTATCGGCATAAAAGAAT
1 AATGCATATGGGTGCATTATCGGCATAAAAGAAT
*
251046 AATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGAT
1 AATGCATATGGGTGCATTATCGGCAT-AAA--A-G----A-AT
*
251089 GAAATGCATATGGGTGCAGTATCGGCATAAAAGAAT
1 --AATGCATATGGGTGCATTATCGGCATAAAAGAAT
*
251125 AATGCATATGGGTGCAGTATCGGCATAAAAGAAT
1 AATGCATATGGGTGCATTATCGGCATAAAAGAAT
* *
251159 AATGCATATGGGTGCATTATTGGCATGAAAG
1 AATGCATATGGGTGCATTATCGGCATAAAAG
251190 GATGCCATAA
Statistics
Matches: 127, Mismatches: 6, Indels: 22
0.82 0.04 0.14
Matches are distributed among these distances:
34 87 0.69
35 3 0.02
36 2 0.02
37 2 0.02
38 1 0.01
41 1 0.01
42 2 0.02
43 2 0.02
44 3 0.02
45 24 0.19
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (34 bp):
AATGCATATGGGTGCATTATCGGCATAAAAGAAT
Found at i:251092 original size:79 final size:79
Alignment explanation
Indices: 250957--251155 Score: 353
Period size: 79 Copynumber: 2.5 Consensus size: 79
250947 GAATGAATGA
*
250957 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGATGAAATGCATATG
*
251022 GGTGCATTATCGGC
66 GGTGCAGTATCGGC
251036 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGATGAAATGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGATGAAATGCATATG
251101 GGTGCAGTATCGGC
66 GGTGCAGTATCGGC
* * *
251115 ATAAAAGAATAATGCATATGGGTGCAGTATCGGCATAAAAG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAG
251156 AATAATGCAT
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 115 1.00
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.25
Consensus pattern (79 bp):
ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGATGAAATGCATATG
GGTGCAGTATCGGC
Found at i:251217 original size:26 final size:25
Alignment explanation
Indices: 251181--251266 Score: 92
Period size: 26 Copynumber: 3.6 Consensus size: 25
251171 TGCATTATTG
251181 GCATGAAAGGATGCCATAAATAAAAT
1 GCATGAAAGGATGCCAT-AATAAAAT
*
251207 GCATGAAAGGATG-CAT--T--AAG
1 GCATGAAAGGATGCCATAATAAAAT
*
251227 GCATGAAAGAATGCCATAACTAAAAT
1 GCATGAAAGGATGCCATAA-TAAAAT
*
251253 GCATGAAATGATGC
1 GCATGAAAGGATGC
251267 ATTAAGGCAT
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
20 14 0.29
21 3 0.06
22 1 0.02
24 1 0.02
25 3 0.06
26 27 0.55
ACGTcount: A:0.45, C:0.13, G:0.22, T:0.20
Consensus pattern (25 bp):
GCATGAAAGGATGCCATAATAAAAT
Found at i:251232 original size:20 final size:20
Alignment explanation
Indices: 251207--251284 Score: 75
Period size: 20 Copynumber: 3.6 Consensus size: 20
251197 TAAATAAAAT
251207 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* *
251227 GCATGAAAGAATGCCATAACTAAAAT
1 GCATGAAAGGATG-CAT---T--AAG
*
251253 GCATGAAATGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
251273 GCATGAAAGGAT
1 GCATGAAAGGAT
251285 ATCATAAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
20 25 0.54
21 3 0.07
22 1 0.02
24 1 0.02
25 3 0.07
26 13 0.28
ACGTcount: A:0.44, C:0.12, G:0.24, T:0.21
Consensus pattern (20 bp):
GCATGAAAGGATGCATTAAG
Found at i:251241 original size:46 final size:46
Alignment explanation
Indices: 251171--251299 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
251161 TGCATATGGG
*
251171 TGCATTATTGGCATGAAAGGATGCCATAAATAAAATGCATGAAAGGA
1 TGCATTA-AGGCATGAAAGGATGCCATAAATAAAATGCATGAAAGGA
* * *
251218 TGCATTAAGGCATGAAAGAATGCCATAACTAAAATGCATGAAATGA
1 TGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAAAGGA
**
251264 TGCATTAAGGCATGAAAGGATATCATAAATAAAATG
1 TGCATTAAGGCATGAAAGGATGCCATAAATAAAATG
251300 AAATTTAATG
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
46 67 0.91
47 7 0.09
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (46 bp):
TGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAAAGGA
Found at i:251498 original size:19 final size:19
Alignment explanation
Indices: 251471--251513 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
251461 AAAACTAAGA
*
251471 AATTCATAATAAGTTTATG
1 AATTTATAATAAGTTTATG
251490 AATTTATAATAAGTTTATG
1 AATTTATAATAAGTTTATG
251509 AATTT
1 AATTT
251514 TCATATTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (19 bp):
AATTTATAATAAGTTTATG
Found at i:254468 original size:19 final size:20
Alignment explanation
Indices: 254436--254488 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 20
254426 ATAAAATTAC
* * *
254436 AATATGATTCATTTA-TTGA
1 AATATAATTAATTTACTTCA
254455 AATATAATTAATTTACTTCA
1 AATATAATTAATTTACTTCA
*
254475 AAT-TAATTATTTTA
1 AATATAATTAATTTA
254489 AAGAAACTCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 23 0.79
20 6 0.21
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.49
Consensus pattern (20 bp):
AATATAATTAATTTACTTCA
Found at i:255136 original size:30 final size:30
Alignment explanation
Indices: 255040--255280 Score: 235
Period size: 30 Copynumber: 8.1 Consensus size: 30
255030 CCAGAATGGG
* *
255040 AAAAATAGAAACTTAAAGGACCAATATAGTAC
1 AAAAATAGAAACTTAAAGGACTAAAATAG--C
* * *
255072 AAACAT-G-AATTTAAAGGTCTAAAATAG-
1 AAAAATAGAAACTTAAAGGACTAAAATAGC
*
255099 AAAAATAGAAACTTAAGGGACTAAAATAGC
1 AAAAATAGAAACTTAAAGGACTAAAATAGC
* * *
255129 TAAAATAGAAACTTAAGGGACTAAAATAGAA
1 AAAAATAGAAACTTAAAGGACTAAAATAG-C
* * *
255160 AAAAATAGACATTTAAAGGACTAAAATAGA
1 AAAAATAGAAACTTAAAGGACTAAAATAGC
*
255190 AAAAATAGAAAATT-AAGAGACTAAAATAGC
1 AAAAATAGAAACTTAAAG-GACTAAAATAGC
* * *
255220 AAAAATAGACATTTAAAGGACTAAAATATC
1 AAAAATAGAAACTTAAAGGACTAAAATAGC
*
255250 -AAAAT-GAAAACTTAAGGGACT-AAATAGC
1 AAAAATAG-AAACTTAAAGGACTAAAATAGC
255278 AAA
1 AAA
255281 TAAAAATAAT
Statistics
Matches: 176, Mismatches: 25, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
27 5 0.03
28 8 0.05
29 38 0.22
30 91 0.52
31 29 0.16
32 5 0.03
ACGTcount: A:0.58, C:0.09, G:0.14, T:0.20
Consensus pattern (30 bp):
AAAAATAGAAACTTAAAGGACTAAAATAGC
Found at i:255153 original size:59 final size:60
Alignment explanation
Indices: 255040--255273 Score: 244
Period size: 59 Copynumber: 3.9 Consensus size: 60
255030 CCAGAATGGG
* * * * * *
255040 AAAAATAGAAACTTAAAGGACCAATATAG-TACAAACATG-AATTTAAAGGTCTAAAATAG-
1 AAAAATAGAAACTTAAAGGACTAAAATAGCTA-AAATA-GAAACTTAAGGGACTAAAATAGA
*
255099 AAAAATAGAAACTTAAGGGACTAAAATAGCTAAAATAGAAACTTAAGGGACTAAAATAGAA
1 AAAAATAGAAACTTAAAGGACTAAAATAGCTAAAATAGAAACTTAAGGGACTAAAATAG-A
* * ** * * *
255160 AAAAATAGACATTTAAAGGACTAAAATAGAAAAAATAGAAAATTAAGAGACTAAAATAGC
1 AAAAATAGAAACTTAAAGGACTAAAATAGCTAAAATAGAAACTTAAGGGACTAAAATAGA
* * *
255220 AAAAATAGACATTTAAAGGACTAAAATATC-AAAAT-GAAAACTTAAGGGACTAAA
1 AAAAATAGAAACTTAAAGGACTAAAATAGCTAAAATAG-AAACTTAAGGGACTAAA
255274 TAGCAAATAA
Statistics
Matches: 151, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
58 2 0.01
59 67 0.44
60 30 0.20
61 52 0.34
ACGTcount: A:0.58, C:0.09, G:0.14, T:0.20
Consensus pattern (60 bp):
AAAAATAGAAACTTAAAGGACTAAAATAGCTAAAATAGAAACTTAAGGGACTAAAATAGA
Found at i:255183 original size:61 final size:58
Alignment explanation
Indices: 255090--255273 Score: 244
Period size: 61 Copynumber: 3.1 Consensus size: 58
255080 ATTTAAAGGT
* * *
255090 CTAAAATAGAAAAATAGAAACTTAAGGGACTAAAATAGCTAAAATAGAAACTTAAGGGA
1 CTAAAATAGAAAAATAGACATTTAAAGGACTAAAATAGC-AAAATAGAAACTTAAGGGA
* * *
255149 CTAAAATAGAAAAAAATAGACATTTAAAGGACTAAAATAGAAAAAATAGAAAATTAAGAGA
1 CTAAAATAG--AAAAATAGACATTTAAAGGACTAAAATAG-CAAAATAGAAACTTAAGGGA
*
255210 CTAAAATAGCAAAAATAGACATTTAAAGGACTAAAATATCAAAAT-GAAAACTTAAGGGA
1 CTAAAATAG-AAAAATAGACATTTAAAGGACTAAAATAGCAAAATAG-AAACTTAAGGGA
255269 CTAAA
1 CTAAA
255274 TAGCAAATAA
Statistics
Matches: 110, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
58 1 0.01
59 29 0.26
60 28 0.25
61 52 0.47
ACGTcount: A:0.59, C:0.08, G:0.14, T:0.19
Consensus pattern (58 bp):
CTAAAATAGAAAAATAGACATTTAAAGGACTAAAATAGCAAAATAGAAACTTAAGGGA
Found at i:255214 original size:91 final size:89
Alignment explanation
Indices: 255040--255247 Score: 283
Period size: 91 Copynumber: 2.3 Consensus size: 89
255030 CCAGAATGGG
* * * * *
255040 AAAAATAGAAACTTAAAGGACCAATATAGTACAAACATGAATTTAAAGGTCTAAAATAGAAAAAT
1 AAAAATAGAAACTTAAAGGACTAAAATAGTAAAAAAATGAATTTAAAGGACTAAAATAGAAAAAT
* *
255105 AGAAACTTAAGGGACTAAAATAGC
66 AGAAAATTAAGAGACTAAAATAGC
* *
255129 TAAAATAGAAACTTAAGGGACTAAAATAG-AAAAAAATAGACATTTAAAGGACTAAAATAGAAAA
1 AAAAATAGAAACTTAAAGGACTAAAATAGTAAAAAAAT-GA-ATTTAAAGGACTAAAATAG-AAA
255193 AATAGAAAATTAAGAGACTAAAATAGC
63 AATAGAAAATTAAGAGACTAAAATAGC
* *
255220 AAAAATAGACATTTAAAGGACTAAAATA
1 AAAAATAGAAACTTAAAGGACTAAAATA
255248 TCAAAATGAA
Statistics
Matches: 103, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
88 6 0.06
89 27 0.26
90 18 0.17
91 52 0.50
ACGTcount: A:0.58, C:0.08, G:0.14, T:0.20
Consensus pattern (89 bp):
AAAAATAGAAACTTAAAGGACTAAAATAGTAAAAAAATGAATTTAAAGGACTAAAATAGAAAAAT
AGAAAATTAAGAGACTAAAATAGC
Found at i:255559 original size:5 final size:5
Alignment explanation
Indices: 255549--255578 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
255539 ATTAGTGCTC
255549 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
255579 TTCATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:256726 original size:3 final size:3
Alignment explanation
Indices: 256718--256777 Score: 111
Period size: 3 Copynumber: 19.7 Consensus size: 3
256708 ATAAAGTAAT
256718 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
256766 TAA TCAA TAA TA
1 TAA T-AA TAA TA
256778 TTTTTGTAGA
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 53 0.95
4 3 0.05
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:271632 original size:2 final size:2
Alignment explanation
Indices: 271627--271652 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
271617 ATATATATAT
271627 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
271653 CATTATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:272707 original size:18 final size:18
Alignment explanation
Indices: 272684--272723 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
272674 ATTTTATTAT
272684 TTGATATTAGTTATGCTA
1 TTGATATTAGTTATGCTA
272702 TTGATATTAGTTATGCTA
1 TTGATATTAGTTATGCTA
272720 TTGA
1 TTGA
272724 CTAATCCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.28, C:0.05, G:0.17, T:0.50
Consensus pattern (18 bp):
TTGATATTAGTTATGCTA
Found at i:274713 original size:18 final size:19
Alignment explanation
Indices: 274690--274726 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
274680 ATGCGCTTAT
274690 TTTTCAAAATCAAA-ATAG
1 TTTTCAAAATCAAAGATAG
274708 TTTTCAAAATCAAAGATAG
1 TTTTCAAAATCAAAGATAG
274727 ACTTTGGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (19 bp):
TTTTCAAAATCAAAGATAG
Found at i:282341 original size:35 final size:35
Alignment explanation
Indices: 282295--282375 Score: 144
Period size: 35 Copynumber: 2.3 Consensus size: 35
282285 ACTCTCAAAG
* *
282295 CCTAATGATAAACAAATAAATTAAAGTAAAATAAT
1 CCTAAAGATAAACAAATAAATTAAAATAAAATAAT
282330 CCTAAAGATAAACAAATAAATTAAAATAAAATAAT
1 CCTAAAGATAAACAAATAAATTAAAATAAAATAAT
282365 CCTAAAGATAA
1 CCTAAAGATAA
282376 TTGTTTTTCC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 44 1.00
ACGTcount: A:0.62, C:0.10, G:0.05, T:0.23
Consensus pattern (35 bp):
CCTAAAGATAAACAAATAAATTAAAATAAAATAAT
Found at i:285050 original size:4 final size:4
Alignment explanation
Indices: 285041--285112 Score: 110
Period size: 4 Copynumber: 18.2 Consensus size: 4
285031 TTTGAGACAG
* * *
285041 AATA AATA AATG AATA AATA AATG AATA AATA AATG AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
285089 AATA AATA AATA AAT- AATA AATA A
1 AATA AATA AATA AATA AATA AATA A
285113 CTCTCTACAT
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
3 3 0.05
4 58 0.95
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (4 bp):
AATA
Found at i:290180 original size:2 final size:2
Alignment explanation
Indices: 290173--290198 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
290163 ATAAATTAAT
290173 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
290199 ATAAAACTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:300676 original size:21 final size:21
Alignment explanation
Indices: 300652--300693 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
300642 TGAATTAAAT
*
300652 TTAATAGATGATTTAAATATA
1 TTAATAGATAATTTAAATATA
*
300673 TTAATCGATAATTTAAATATA
1 TTAATAGATAATTTAAATATA
300694 CTCTAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (21 bp):
TTAATAGATAATTTAAATATA
Found at i:301935 original size:33 final size:34
Alignment explanation
Indices: 301862--301946 Score: 145
Period size: 34 Copynumber: 2.5 Consensus size: 34
301852 CTGAATACGT
* *
301862 GAAAACGGGTATCGTTACGGTCAAAAAAAGAAAA
1 GAAAACGGGTATCGTTACGGTAAAAAAAAAAAAA
301896 GAAAACGGGTATCGTTACGGTAAAAAAAAAAAAA
1 GAAAACGGGTATCGTTACGGTAAAAAAAAAAAAA
301930 G-AAACGGGTATCGTTAC
1 GAAAACGGGTATCGTTAC
301947 TTGTTATCCA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
33 16 0.33
34 33 0.67
ACGTcount: A:0.48, C:0.12, G:0.24, T:0.16
Consensus pattern (34 bp):
GAAAACGGGTATCGTTACGGTAAAAAAAAAAAAA
Found at i:302813 original size:42 final size:42
Alignment explanation
Indices: 302687--302814 Score: 111
Period size: 42 Copynumber: 3.1 Consensus size: 42
302677 TACAAACACT
* *
302687 GCAATATGATTAATATATAGTGGCGTTTTTTCAACAAACGTC
1 GCAATAGGATTAATATATAGTGGAGTTTTTTCAACAAACGTC
* * ** * *
302729 ACAACAGAGCAGCAAT-T-TAGTGGAG-TTGTT-ATACAAATGTC
1 GCAATAG-G-ATTAATATATAGTGGAGTTTTTTCA-ACAAACGTC
* *
302770 GCAATAGGTTTAATATATAGTGGTGTTTTTTCAACAAACGTC
1 GCAATAGGATTAATATATAGTGGAGTTTTTTCAACAAACGTC
302812 GCA
1 GCA
302815 CCTGAATAGT
Statistics
Matches: 63, Mismatches: 16, Indels: 14
0.68 0.17 0.15
Matches are distributed among these distances:
39 3 0.05
40 3 0.05
41 24 0.38
42 26 0.41
43 3 0.05
44 4 0.06
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.33
Consensus pattern (42 bp):
GCAATAGGATTAATATATAGTGGAGTTTTTTCAACAAACGTC
Found at i:302831 original size:83 final size:83
Alignment explanation
Indices: 302687--302859 Score: 220
Period size: 83 Copynumber: 2.1 Consensus size: 83
302677 TACAAACACT
* * *
302687 GCAATATGATTAATATATAGTGGCGTTTTTTCAACAAACGTCACAACAGAGCAGCAATTTAGTGG
1 GCAATAGGATTAATATATAGTGGCGTTTTTTCAACAAACGTCACAACAGAACAGCAATTTAGCGG
*
302752 AGTTGTTATACAAATGTC
66 AGTTGTTACACAAATGTC
* * * * * * * *
302770 GCAATAGGTTTAATATATAGTGGTGTTTTTTCAACAAACGTCGCACCTGAATAGTACTTTAGCGG
1 GCAATAGGATTAATATATAGTGGCGTTTTTTCAACAAACGTCACAACAGAACAGCAATTTAGCGG
* *
302835 CGTTTTTACACAAATGTC
66 AGTTGTTACACAAATGTC
302853 GCAATAG
1 GCAATAG
302860 AGTAGAAATT
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
83 76 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (83 bp):
GCAATAGGATTAATATATAGTGGCGTTTTTTCAACAAACGTCACAACAGAACAGCAATTTAGCGG
AGTTGTTACACAAATGTC
Found at i:303196 original size:43 final size:43
Alignment explanation
Indices: 303143--303246 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 43
303133 GTAATAGTCC
303143 TGTACTTTAGTGGCAT-TTTTTGCAATAAACATCGCAATAATCA
1 TGTACTTTAGTGG-ATGTTTTTGCAATAAACATCGCAATAATCA
* * * *
303186 TGTAATTTAGT-GATGTTTTTGTAATAAACGTCGCAATAGTCA
1 TGTACTTTAGTGGATGTTTTTGCAATAAACATCGCAATAATCA
*
303228 TGTACCTTAGTGG-TGTTTT
1 TGTACTTTAGTGGATGTTTT
303247 ATTATAAACG
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
41 2 0.04
42 40 0.75
43 11 0.21
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.41
Consensus pattern (43 bp):
TGTACTTTAGTGGATGTTTTTGCAATAAACATCGCAATAATCA
Found at i:309164 original size:43 final size:43
Alignment explanation
Indices: 309116--309201 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
309106 AGTATTTTTC
*
309116 AACAACGCCACTAAATATCATAACCTTTAGTGGCGTTTATAGA
1 AACAACGCCACTAAAAATCATAACCTTTAGTGGCGTTTATAGA
* * *
309159 AACAACGTCTCTAAAAATCATAACCTTTAGTGGCGTTTGTAGA
1 AACAACGCCACTAAAAATCATAACCTTTAGTGGCGTTTATAGA
309202 CGAAAAATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (43 bp):
AACAACGCCACTAAAAATCATAACCTTTAGTGGCGTTTATAGA
Found at i:310133 original size:3 final size:3
Alignment explanation
Indices: 310125--310152 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
310115 TCAAGCCCTA
310125 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
310153 GTAAGCCTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:318813 original size:24 final size:23
Alignment explanation
Indices: 318778--318826 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
318768 TACGGTGGAA
*
318778 GCGTCGTCGTCGAGCTTCGATTCG
1 GCGTCGTCGTCGAG-TACGATTCG
*
318802 GCGTCG-CTGTCGTGTACGATTCG
1 GCGTCGTC-GTCGAGTACGATTCG
318825 GC
1 GC
318827 CCAAGCAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.08, C:0.29, G:0.35, T:0.29
Consensus pattern (23 bp):
GCGTCGTCGTCGAGTACGATTCG
Found at i:319486 original size:28 final size:29
Alignment explanation
Indices: 319435--319490 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
319425 TATTGAATCA
319435 TCAATTTTTAAACATTATTCATTAAAATG
1 TCAATTTTTAAACATTATTCATTAAAATG
* * *
319464 TCAA-TTTTAAATATTGTTTATTAAAAT
1 TCAATTTTTAAACATTATTCATTAAAAT
319491 ATGGAGTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 20 0.83
29 4 0.17
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (29 bp):
TCAATTTTTAAACATTATTCATTAAAATG
Found at i:320394 original size:18 final size:18
Alignment explanation
Indices: 320359--320418 Score: 84
Period size: 18 Copynumber: 3.3 Consensus size: 18
320349 AATGAATATT
* * *
320359 TGTCCCGAATGACAACTA
1 TGTCCCCAAGGACCACTA
*
320377 TGTCCTCAAGGACCACTA
1 TGTCCCCAAGGACCACTA
320395 TGTCCCCAAGGACCACTA
1 TGTCCCCAAGGACCACTA
320413 TGTCCC
1 TGTCCC
320419 TGTAACATCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.27, C:0.35, G:0.17, T:0.22
Consensus pattern (18 bp):
TGTCCCCAAGGACCACTA
Found at i:321689 original size:13 final size:13
Alignment explanation
Indices: 321671--321695 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
321661 TCTGTAACAA
321671 ACAATAAAATATT
1 ACAATAAAATATT
321684 ACAATAAAATAT
1 ACAATAAAATAT
321696 ATTCAGTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
ACAATAAAATATT
Found at i:322449 original size:39 final size:34
Alignment explanation
Indices: 322379--322451 Score: 83
Period size: 35 Copynumber: 2.0 Consensus size: 34
322369 CGATCCGTAT
*
322379 CCGATCCGATAATCCGAAAAAAAAATTTCGGATA
1 CCGATCCGATAATCCGAAAAAAAAATATCGGATA
*
322413 CCGATCCGAATTATCCGAAAATTGAAAAATGATCGGATA
1 CCGATCCG-ATAATCCGAAAA---AAAAAT-ATCGGATA
322452 TCTGAATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
34 8 0.25
35 11 0.34
38 6 0.19
39 7 0.22
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.22
Consensus pattern (34 bp):
CCGATCCGATAATCCGAAAAAAAAATATCGGATA
Found at i:322927 original size:21 final size:21
Alignment explanation
Indices: 322903--322950 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
322893 ACAATTCAAC
322903 AATATATTATCATATTTTCTT
1 AATATATTATCATATTTTCTT
322924 AATATATTATCATATTTTCTT
1 AATATATTATCATATTTTCTT
322945 AATATA
1 AATATA
322951 AGTCCAAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (21 bp):
AATATATTATCATATTTTCTT
Found at i:323564 original size:15 final size:15
Alignment explanation
Indices: 323546--323575 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
323536 CTGTAAACAA
323546 ACAATAAAATATATT
1 ACAATAAAATATATT
323561 ACAATAAAATATATT
1 ACAATAAAATATATT
323576 CAGTAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (15 bp):
ACAATAAAATATATT
Found at i:325738 original size:7 final size:7
Alignment explanation
Indices: 325726--325759 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
325716 TCTTGTAAAT
325726 ACCCTAA
1 ACCCTAA
325733 ACCCTAA
1 ACCCTAA
325740 ACCCTAA
1 ACCCTAA
325747 ACCCTAA
1 ACCCTAA
*
325754 AACCTA
1 ACCCTA
325760 GGGATGAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.15
Consensus pattern (7 bp):
ACCCTAA
Found at i:325900 original size:37 final size:36
Alignment explanation
Indices: 325858--325966 Score: 166
Period size: 35 Copynumber: 3.0 Consensus size: 36
325848 CATTTTTAAC
* *
325858 AAACATCTACCAAACTTTGAAAAACTATTTTTCAAAG
1 AAACATTTACCAAACTTTG-AAAACCATTTTTCAAAG
325895 AAACATTTACCAAACTTTGAAAACCA-TTTTCAAAG
1 AAACATTTACCAAACTTTGAAAACCATTTTTCAAAG
*
325930 AAACATTTATCAAACTTTGAAAACCATTTTTTCAAAG
1 AAACATTTACCAAACTTTGAAAACCA-TTTTTCAAAG
325967 TTGGTTACCA
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
35 34 0.51
36 6 0.09
37 27 0.40
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.31
Consensus pattern (36 bp):
AAACATTTACCAAACTTTGAAAACCATTTTTCAAAG
Found at i:325922 original size:21 final size:21
Alignment explanation
Indices: 325898--325958 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
325888 TTCAAAGAAA
*
325898 CATTTACCAAACTTTGAAAAC
1 CATTTATCAAACTTTGAAAAC
325919 CATTT-TCAAA----G-AAA-
1 CATTTATCAAACTTTGAAAAC
325933 CATTTATCAAACTTTGAAAAC
1 CATTTATCAAACTTTGAAAAC
325954 CATTT
1 CATTT
325959 TTTCAAAGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 14
0.68 0.02 0.30
Matches are distributed among these distances:
14 5 0.16
15 8 0.25
16 1 0.03
19 1 0.03
20 7 0.22
21 10 0.31
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.33
Consensus pattern (21 bp):
CATTTATCAAACTTTGAAAAC
Found at i:325979 original size:35 final size:36
Alignment explanation
Indices: 325865--325993 Score: 133
Period size: 35 Copynumber: 3.6 Consensus size: 36
325855 AACAAACATC
* *
325865 TACCAAACTTTGAAAAAC-TATTTTTCAAAGAAACATT
1 TACCAAACTTTGAAAACCAT-TTTTTCAAAG-AACAGT
*
325902 TACCAAACTTTGAAAACCA--TTTTCAAAGAAACATT
1 TACCAAACTTTGAAAACCATTTTTTCAAAG-AACAGT
* ***
325937 TATCAAACTTTGAAAACCATTTTTTCAAAG-TTGGT
1 TACCAAACTTTGAAAACCATTTTTTCAAAGAACAGT
325972 TACCAAAC-TTGAAAACCATTTT
1 TACCAAACTTTGAAAACCATTTT
325994 AATACTTTCA
Statistics
Matches: 82, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
34 14 0.17
35 42 0.51
37 26 0.32
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.33
Consensus pattern (36 bp):
TACCAAACTTTGAAAACCATTTTTTCAAAGAACAGT
Found at i:330049 original size:16 final size:17
Alignment explanation
Indices: 330021--330056 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
330011 TGTATCGCCG
330021 ACAAAATTTTACTATTC
1 ACAAAATTTTACTATTC
330038 ACAAAA-TTTACTATTC
1 ACAAAATTTTACTATTC
330054 ACA
1 ACA
330057 TGAATAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.36
Consensus pattern (17 bp):
ACAAAATTTTACTATTC
Found at i:330522 original size:37 final size:36
Alignment explanation
Indices: 330463--330582 Score: 181
Period size: 35 Copynumber: 3.3 Consensus size: 36
330453 ATCCCATTAT
* *
330463 CATTTTTC-AACAAACATCTACCAAACTTTGAAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTG-AAAAC
*
330499 TATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
330535 CA-TTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
330570 CATTTTTTCAAAG
1 CA-TTTTTCAAAG
330583 TTGGTTACCA
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
35 35 0.45
36 13 0.17
37 29 0.38
ACGTcount: A:0.43, C:0.20, G:0.05, T:0.32
Consensus pattern (36 bp):
CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
Found at i:330538 original size:21 final size:21
Alignment explanation
Indices: 330514--330574 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
330504 TTCAAAGAAA
330514 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
*
330535 CATTT-TCAAA----G-AAA-
1 CATTTACCAAACTTTGAAAAC
330549 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
330570 CATTT
1 CATTT
330575 TTTCAAAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 7 0.23
16 1 0.03
19 1 0.03
20 7 0.23
21 10 0.32
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (21 bp):
CATTTACCAAACTTTGAAAAC
Found at i:330591 original size:35 final size:36
Alignment explanation
Indices: 330465--330609 Score: 142
Period size: 35 Copynumber: 4.1 Consensus size: 36
330455 CCCATTATCA
*
330465 TTTTTCAACA-AACA-TCTACCAAACTTTGAAAAAC-T
1 TTTTTCAA-AGAACAGT-TACCAAACTTTGAAAACCAT
*
330500 ATTTTTCAAAGAAACATTTACCAAACTTTGAAAACCA-
1 -TTTTTCAAAG-AACAGTTACCAAACTTTGAAAACCAT
*
330537 -TTTTCAAAGAAACATTTACCAAACTTTGAAAACCAT
1 TTTTTCAAAG-AACAGTTACCAAACTTTGAAAACCAT
***
330573 TTTTTCAAAG-TTGGTTACCAAAC-TTGAAAACCAT
1 TTTTTCAAAGAACAGTTACCAAACTTTGAAAACCAT
330607 TTT
1 TTT
330610 AATACTTTCA
Statistics
Matches: 98, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
34 14 0.14
35 45 0.46
36 8 0.08
37 30 0.31
38 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.33
Consensus pattern (36 bp):
TTTTTCAAAGAACAGTTACCAAACTTTGAAAACCAT
Found at i:335199 original size:20 final size:21
Alignment explanation
Indices: 335174--335217 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
335164 AAGGTTTGTG
335174 TTATAA-TGGGTTTAGGGTTT
1 TTATAATTGGGTTTAGGGTTT
*
335194 TTATAATTGGTTTTAGGGTTT
1 TTATAATTGGGTTTAGGGTTT
335215 TTA
1 TTA
335218 AGGTTTAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.20, C:0.00, G:0.25, T:0.55
Consensus pattern (21 bp):
TTATAATTGGGTTTAGGGTTT
Found at i:335378 original size:26 final size:26
Alignment explanation
Indices: 335342--335394 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
335332 ATAAATGAAA
*
335342 AGATTACAATTTTATTAGATCTATCG
1 AGATTACAATTTTAGTAGATCTATCG
*
335368 AGATTACAATTTTAGTGGATCTATCG
1 AGATTACAATTTTAGTAGATCTATCG
335394 A
1 A
335395 TGTCTCATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (26 bp):
AGATTACAATTTTAGTAGATCTATCG
Found at i:337036 original size:214 final size:214
Alignment explanation
Indices: 336699--337122 Score: 785
Period size: 214 Copynumber: 2.0 Consensus size: 214
336689 CTACCTTGAA
* *
336699 AGTAACGAAAATGCATATGACTCATTCATGATTAGGCACAAAAAAGGCATGCGGTACCATGCCCA
1 AGTAACGAAAATGCATATGACTCATTCATGATCAGGCACAAAAAAGGCATGAGGTACCATGCCCA
*
336764 CGATTAGAGAAGCATGAGATACCCGCCAATACCAGTCTTACTATATTTCATGGCCCAACATAATT
66 CGATTAGAGAAGCATGAGACACCCGCCAATACCAGTCTTACTATATTTCATGGCCCAACATAATT
*
336829 CTCTAAATAAAAATGCCAACACTGCAATCCCCCAACTTAGTGTGCCGGCTACTTTAAAATCGATC
131 CTCTAAATAAAAATGCCAACACTGCAATCCCCCAACTTAGTGTGCCGGCTACTTCAAAATCGATC
336894 AGATGTCGCAACCACGTAC
196 AGATGTCGCAACCACGTAC
*
336913 AGTAACGAAAATGCATATGACTCATTCATGATCAGGCACAAAAAAGTCATGAGGTACCATGCCCA
1 AGTAACGAAAATGCATATGACTCATTCATGATCAGGCACAAAAAAGGCATGAGGTACCATGCCCA
336978 CGATTAGAGAAGCATGAGACACCCGCCAATACCAGTCTTACTATATTTCATGGCCCAACATAATT
66 CGATTAGAGAAGCATGAGACACCCGCCAATACCAGTCTTACTATATTTCATGGCCCAACATAATT
* *
337043 CTCTAAATAAAAATGCCAACACTGTAGTCCCCCAACTTAGTGTGCCGGCTACTTCAAAATCGATC
131 CTCTAAATAAAAATGCCAACACTGCAATCCCCCAACTTAGTGTGCCGGCTACTTCAAAATCGATC
337108 AGATGTCGCAACCAC
196 AGATGTCGCAACCAC
337123 ATATAGTGGA
Statistics
Matches: 203, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
214 203 1.00
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (214 bp):
AGTAACGAAAATGCATATGACTCATTCATGATCAGGCACAAAAAAGGCATGAGGTACCATGCCCA
CGATTAGAGAAGCATGAGACACCCGCCAATACCAGTCTTACTATATTTCATGGCCCAACATAATT
CTCTAAATAAAAATGCCAACACTGCAATCCCCCAACTTAGTGTGCCGGCTACTTCAAAATCGATC
AGATGTCGCAACCACGTAC
Found at i:337904 original size:11 final size:11
Alignment explanation
Indices: 337888--337922 Score: 52
Period size: 11 Copynumber: 3.0 Consensus size: 11
337878 TAAATTCTAA
337888 AATAAAATAAT
1 AATAAAATAAT
337899 AATAAAATAATT
1 AATAAAATAA-T
337911 ACATAAAATAAT
1 A-ATAAAATAAT
337923 TAATTACACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 10 0.45
12 3 0.14
13 9 0.41
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:337918 original size:13 final size:12
Alignment explanation
Indices: 337888--337926 Score: 62
Period size: 13 Copynumber: 3.2 Consensus size: 12
337878 TAAATTCTAA
337888 AATAAAATAA-T
1 AATAAAATAATT
337899 AATAAAATAATT
1 AATAAAATAATT
337911 ACATAAAATAATT
1 A-ATAAAATAATT
337924 AAT
1 AAT
337927 TACACAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 10 0.38
12 4 0.15
13 12 0.46
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (12 bp):
AATAAAATAATT
Found at i:337944 original size:21 final size:20
Alignment explanation
Indices: 337896--337944 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 20
337886 AAAATAAAAT
*
337896 AATAATAAAA-TAATTACAT
1 AATAATAAAATTAATTACAA
337915 AA-AAT--AATTAATTACACA
1 AATAATAAAATTAATTACA-A
337933 AATAATAAAATT
1 AATAATAAAATT
337945 TTAATGATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 8
0.73 0.03 0.24
Matches are distributed among these distances:
16 2 0.08
17 8 0.33
18 5 0.21
19 5 0.21
21 4 0.17
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (20 bp):
AATAATAAAATTAATTACAA
Found at i:340032 original size:18 final size:18
Alignment explanation
Indices: 340004--340046 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
339994 TCATCCTATT
*
340004 TTTACTTTAATTACTTTTA
1 TTTA-TTTAATCACTTTTA
*
340023 TTTATTTAATCGCTTTTA
1 TTTATTTAATCACTTTTA
340041 -TTATTT
1 TTTATTT
340047 TGATATCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 6 0.27
18 12 0.55
19 4 0.18
ACGTcount: A:0.23, C:0.09, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTATTTAATCACTTTTA
Found at i:350143 original size:55 final size:55
Alignment explanation
Indices: 350021--350402 Score: 586
Period size: 55 Copynumber: 7.0 Consensus size: 55
350011 CCTAATGTCA
* * * * * * * * * *
350021 ATACAGAAATTCATACACCCATTAGGAATTTCTTCG-GTTGAACACACAGTGTCA
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
* * *
350075 ATACAGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTTCCC
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
*
350130 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTACCC
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
350185 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
* * *
350240 ATAAGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTTCACACAAAGTGCCC
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
*
350295 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTTCACACAAAGTGCCC
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
*
350350 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACATAGTGC
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGC
350403 ACTTTAGTAA
Statistics
Matches: 305, Mismatches: 22, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
54 31 0.10
55 274 0.90
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (55 bp):
ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
Found at i:351475 original size:19 final size:18
Alignment explanation
Indices: 351443--351485 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
351433 CATAAATTTT
*
351443 AATTT-TAATTTTTATAA
1 AATTTATAATATTTATAA
*
351460 AACTTTATAATATTTATTA
1 AA-TTTATAATATTTATAA
351479 AATTTAT
1 AATTTAT
351486 TTTTATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 8 0.36
19 12 0.55
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (18 bp):
AATTTATAATATTTATAA
Found at i:351635 original size:2 final size:2
Alignment explanation
Indices: 351630--351669 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
351620 TTAAAAAATA
351630 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
351670 TGGTATTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:355256 original size:20 final size:21
Alignment explanation
Indices: 355214--355257 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
355204 TTTTATTTTA
* *
355214 TTTATTTTTCTTTAAATCGCT
1 TTTATTATTATTTAAATCGCT
*
355235 TTTATTATTATTT-AATCTCT
1 TTTATTATTATTTAAATCGCT
355255 TTT
1 TTT
355258 TACCAAAACC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.20, C:0.11, G:0.02, T:0.66
Consensus pattern (21 bp):
TTTATTATTATTTAAATCGCT
Found at i:361129 original size:26 final size:26
Alignment explanation
Indices: 361086--361136 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
361076 TACTCCATGA
* *
361086 AAAAAATAGCAGCAGTTCGAAAAAAG
1 AAAAAAGAGAAGCAGTTCGAAAAAAG
*
361112 AAAAAAGAGAAGCTGTTCGAAAAAA
1 AAAAAAGAGAAGCAGTTCGAAAAAA
361137 TGGAGAAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.59, C:0.10, G:0.20, T:0.12
Consensus pattern (26 bp):
AAAAAAGAGAAGCAGTTCGAAAAAAG
Found at i:361999 original size:26 final size:26
Alignment explanation
Indices: 361945--362001 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
361935 TTGACGTGGT
* ** *
361945 AGTTTCTAGAAGGTGTAGTCAGCGGC
1 AGTTTCTAAAAGGTCCAGTCAGCAGC
*
361971 AGTTTCTAAAAGGTCCAGTCAGCATC
1 AGTTTCTAAAAGGTCCAGTCAGCAGC
361997 AGTTT
1 AGTTT
362002 TTTAGAAGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (26 bp):
AGTTTCTAAAAGGTCCAGTCAGCAGC
Found at i:363244 original size:17 final size:18
Alignment explanation
Indices: 363208--363258 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
363198 AGTTTATAAC
*
363208 TAAATA-ATCAAATAAAAA
1 TAAATACATAAAAT-AAAA
363226 TAAATAC-TAAAATAAAA
1 TAAATACATAAAATAAAA
*
363243 TAATTACATAAAATAA
1 TAAATACATAAAATAA
363259 TTAATTACAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 10 0.34
18 19 0.66
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (18 bp):
TAAATACATAAAATAAAA
Found at i:363253 original size:13 final size:13
Alignment explanation
Indices: 363237--363261 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
363227 AAATACTAAA
363237 ATAAAATAATTAC
1 ATAAAATAATTAC
363250 ATAAAATAATTA
1 ATAAAATAATTA
363262 ATTACACAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATAAAATAATTAC
Found at i:363263 original size:17 final size:18
Alignment explanation
Indices: 363217--363267 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 18
363207 CTAAATAATC
*
363217 AAATAAAAATAAATAC-TA
1 AAAT-AAAATAATTACATA
363235 AAATAAAATAATTACATA
1 AAATAAAATAATTACATA
*
363253 AAAT-AATTAATTACA
1 AAATAAAATAATTACA
363268 CAAATAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
17 20 0.67
18 10 0.33
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (18 bp):
AAATAAAATAATTACATA
Found at i:363281 original size:17 final size:18
Alignment explanation
Indices: 363233--363281 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
363223 AAATAAATAC
363233 TAAAATAA-AATAATTACA
1 TAAAATAATAA-AATTACA
*
363251 TAAAATAAT-TAATTACA
1 TAAAATAATAAAATTACA
*
363268 -CAAATAATAAAATT
1 TAAAATAATAAAATT
363282 TTAATGATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
16 7 0.27
17 11 0.42
18 8 0.31
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATAATAAAATTACA
Found at i:367732 original size:2 final size:2
Alignment explanation
Indices: 367725--367750 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
367715 CATCATGTTG
367725 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
367751 TGCATCAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:369637 original size:2 final size:2
Alignment explanation
Indices: 369630--369662 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
369620 AGATTTATCA
369630 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
369663 ATTTAAGGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:373569 original size:12 final size:12
Alignment explanation
Indices: 373552--373576 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
373542 AATTTTCTTT
373552 TAAAGCGAAGGC
1 TAAAGCGAAGGC
373564 TAAAGCGAAGGC
1 TAAAGCGAAGGC
373576 T
1 T
373577 CAATTCCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.32, T:0.12
Consensus pattern (12 bp):
TAAAGCGAAGGC
Found at i:373979 original size:17 final size:18
Alignment explanation
Indices: 373957--373998 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
373947 CTTTAAATTA
373957 TTTATTTAATTATT-TCT
1 TTTATTTAATTATTATCT
* *
373974 TTTATTTAATTCTTATTT
1 TTTATTTAATTATTATCT
373992 TTTATTT
1 TTTATTT
373999 TAAAAACAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTATTTAATTATTATCT
Found at i:374894 original size:13 final size:13
Alignment explanation
Indices: 374873--374903 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
374863 AAGCGAGCGA
*
374873 ATTACGAAGGAGC
1 ATTATGAAGGAGC
374886 ATTATGAAGGAGC
1 ATTATGAAGGAGC
374899 ATTAT
1 ATTAT
374904 TTCCATTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.10, G:0.26, T:0.26
Consensus pattern (13 bp):
ATTATGAAGGAGC
Found at i:378969 original size:5 final size:5
Alignment explanation
Indices: 378941--378996 Score: 67
Period size: 5 Copynumber: 10.8 Consensus size: 5
378931 TTTGTTATAT
* * *
378941 TTTTG TTTTA TTCTA TTTTCA TTTTA TTTTA TTTTG TTTTA TTTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTT-A TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA
378993 TTTT
1 TTTT
378997 TAGCAAACCT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
5 34 0.77
6 10 0.23
ACGTcount: A:0.14, C:0.04, G:0.04, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:378970 original size:21 final size:21
Alignment explanation
Indices: 378938--378994 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
378928 CATTTTGTTA
*
378938 TATTTTTGTTTTATTCTATTT
1 TATTTTTATTTTATTCTATTT
* *
378959 TCA-TTTTATTTTATTTTGTTT
1 T-ATTTTTATTTTATTCTATTT
378980 TATTTTTATTTTATT
1 TATTTTTATTTTATT
378995 TTTAGCAAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
20 1 0.03
21 29 0.94
22 1 0.03
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.77
Consensus pattern (21 bp):
TATTTTTATTTTATTCTATTT
Found at i:378986 original size:16 final size:15
Alignment explanation
Indices: 378941--378996 Score: 67
Period size: 16 Copynumber: 3.6 Consensus size: 15
378931 TTTGTTATAT
* *
378941 TTTTGTTTTATTCTA
1 TTTTATTTTATTTTA
378956 TTTTCATTTTATTTTA
1 TTTT-ATTTTATTTTA
*
378972 TTTTGTTTTATTTTTA
1 TTTTATTTTA-TTTTA
378988 TTTTATTTT
1 TTTTATTTT
378997 TAGCAAACCT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
15 9 0.26
16 26 0.74
ACGTcount: A:0.14, C:0.04, G:0.04, T:0.79
Consensus pattern (15 bp):
TTTTATTTTATTTTA
Found at i:381982 original size:17 final size:18
Alignment explanation
Indices: 381960--382001 Score: 77
Period size: 17 Copynumber: 2.4 Consensus size: 18
381950 CTTTAAATTA
381960 TTTATTTAATTATT-TCT
1 TTTATTTAATTATTATCT
381977 TTTATTTAATTATTATCT
1 TTTATTTAATTATTATCT
381995 TTTATTT
1 TTTATTT
382002 TAAAAACAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTATTTAATTATTATCT
Found at i:384072 original size:21 final size:21
Alignment explanation
Indices: 384021--384073 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
384011 ATTATTATTA
384021 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
**
384042 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
384063 TCGCAATGCGA
1 TCGCAATGCGA
384074 ATAAGTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:384093 original size:41 final size:41
Alignment explanation
Indices: 384048--384298 Score: 150
Period size: 41 Copynumber: 6.1 Consensus size: 41
384038 AATTTCGCGT
** *
384048 TGCGATTTTCCCAATTCGCAATGCGAATAAGTAAATCGCAA
1 TGCGATTTTCGTAAATCGCAATGCGAATAAGTAAATCGCAA
* * * * * *
384089 TGCGAATTTGGAAAATCGCAATTCG-AT-ACTGACTATCGCAA
1 TGCGATTTTCGTAAATCGCAATGCGAATAAGT-A-AATCGCAA
* * * * * * * * **
384130 CGCAATTTTCCTAATTCGCATTGCGATTTACGT-ATTCGCGT
1 TGCGATTTTCGTAAATCGCAATGCGA-ATAAGTAAATCGCAA
* * * *
384171 TGCGATTTTCATAATTTCACAATGCGAATACGTAAATCGCAA
1 TGCGATTTTCGTAA-ATCGCAATGCGAATAAGTAAATCGCAA
** * *
384213 TGCGA-TTAAGTAAATCGCACTGCGATTAAGTAAATCGCAA
1 TGCGATTTTCGTAAATCGCAATGCGAATAAGTAAATCGCAA
* ** * *
384253 TGCGAATTAGGAAAATCGCAATGCGAATACGTAAATCGCAA
1 TGCGATTTTCGTAAATCGCAATGCGAATAAGTAAATCGCAA
384294 TGCGA
1 TGCGA
384299 ATCTGACTAT
Statistics
Matches: 156, Mismatches: 46, Indels: 16
0.72 0.21 0.07
Matches are distributed among these distances:
39 2 0.01
40 30 0.19
41 102 0.65
42 20 0.13
43 1 0.01
44 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (41 bp):
TGCGATTTTCGTAAATCGCAATGCGAATAAGTAAATCGCAA
Found at i:384106 original size:21 final size:20
Alignment explanation
Indices: 384063--384110 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
384053 TTTTCCCAAT
*
384063 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGAAAA
**
384083 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAA-TAAGAAAA
384104 TCGCAAT
1 TCGCAAT
384111 TCGATACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.23
Consensus pattern (20 bp):
TCGCAATGCGAATAAGAAAA
Found at i:384158 original size:21 final size:21
Alignment explanation
Indices: 384134--384186 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
384124 TCGCAACGCA
*
384134 ATTTTCCTAATTCGCATTGCG
1 ATTTTCATAATTCGCATTGCG
* * *
384155 ATTTACGT-ATTCGCGTTGCG
1 ATTTTCATAATTCGCATTGCG
384175 ATTTTCATAATT
1 ATTTTCATAATT
384187 TCACAATGCG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.45
Consensus pattern (21 bp):
ATTTTCATAATTCGCATTGCG
Found at i:384215 original size:20 final size:20
Alignment explanation
Indices: 384190--384300 Score: 150
Period size: 20 Copynumber: 5.5 Consensus size: 20
384180 CATAATTTCA
*
384190 CAATGCGAATACGTAAATCG
1 CAATGCGAATAAGTAAATCG
*
384210 CAATGCGATTAAGTAAATCG
1 CAATGCGAATAAGTAAATCG
* *
384230 CACTGCGATTAAGTAAATCG
1 CAATGCGAATAAGTAAATCG
* *
384250 CAATGCGAATTAGGAAAATCG
1 CAATGCGAA-TAAGTAAATCG
*
384271 CAATGCGAATACGTAAATCG
1 CAATGCGAATAAGTAAATCG
384291 CAATGCGAAT
1 CAATGCGAAT
384301 CTGACTATCG
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
20 63 0.78
21 18 0.22
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.22
Consensus pattern (20 bp):
CAATGCGAATAAGTAAATCG
Found at i:384299 original size:41 final size:41
Alignment explanation
Indices: 384190--384300 Score: 170
Period size: 41 Copynumber: 2.7 Consensus size: 41
384180 CATAATTTCA
*
384190 CAATGCGAATACGTAAATCGCAATGCG-ATTAAGTAAATCG
1 CAATGCGAATACGTAAATCGCAATGCGAATTAAGAAAATCG
* * * *
384230 CACTGCGATTAAGTAAATCGCAATGCGAATTAGGAAAATCG
1 CAATGCGAATACGTAAATCGCAATGCGAATTAAGAAAATCG
384271 CAATGCGAATACGTAAATCGCAATGCGAAT
1 CAATGCGAATACGTAAATCGCAATGCGAAT
384301 CTGACTATCG
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
40 24 0.39
41 38 0.61
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.22
Consensus pattern (41 bp):
CAATGCGAATACGTAAATCGCAATGCGAATTAAGAAAATCG
Found at i:384870 original size:20 final size:20
Alignment explanation
Indices: 384845--384882 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
384835 TAGTTTCGAG
384845 AATGACAATCGCAACGCGGA
1 AATGACAATCGCAACGCGGA
*
384865 AATGACTATCGCAACGCG
1 AATGACAATCGCAACGCG
384883 AAACCAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.26, G:0.24, T:0.13
Consensus pattern (20 bp):
AATGACAATCGCAACGCGGA
Found at i:384981 original size:20 final size:19
Alignment explanation
Indices: 384901--384984 Score: 97
Period size: 19 Copynumber: 4.6 Consensus size: 19
384891 ATCGCATTGT
384901 GATTTTCATTTCGCGTTGC
1 GATTTTCATTTCGCGTTGC
384920 GATTTTCATTTCGCGTTGC
1 GATTTTCATTTCGCGTTGC
*
384939 GA--TTC---TCTCGTTGC
1 GATTTTCATTTCGCGTTGC
**
384953 GATAGTCATTTCCGCGTTGC
1 GATTTTCATTT-CGCGTTGC
384973 GATTTTCATTTC
1 GATTTTCATTTC
384985 AACCAAAAGA
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
14 10 0.19
16 2 0.04
17 3 0.06
19 23 0.43
20 16 0.30
ACGTcount: A:0.12, C:0.23, G:0.20, T:0.45
Consensus pattern (19 bp):
GATTTTCATTTCGCGTTGC
Found at i:386866 original size:94 final size:94
Alignment explanation
Indices: 386678--386982 Score: 503
Period size: 94 Copynumber: 3.3 Consensus size: 94
386668 TAGATTGCTT
* *
386678 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAAC--TGT-TT-ATTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
386739 ATTTGTCTTTTGTTTTGTCTTTTGGTTG-A
66 ATTTGTC-TTTGTTTTGTCTTTTGGTTGAA
* *
386768 AGTAAATTTATTCGGTTGCTGCAAATTCTGCTAAACTGTGTATTCTTTAACACAGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
386833 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
386862 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
386927 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
* *
386956 AGTAAATTTGTTCGTTTGCTGCCAATT
1 AGTAAATTTATTCGGTTGCTGCCAATT
386983 GAAACTATTC
Statistics
Matches: 202, Mismatches: 8, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
90 34 0.17
92 3 0.01
93 22 0.11
94 143 0.71
ACGTcount: A:0.22, C:0.12, G:0.19, T:0.46
Consensus pattern (94 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:388862 original size:14 final size:14
Alignment explanation
Indices: 388843--388878 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
388833 ATTGTTTAAT
388843 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
388857 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
388871 TGATTTGT
1 TGATTTGT
388879 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:389001 original size:19 final size:19
Alignment explanation
Indices: 388985--389031 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
388975 AAAAATGACT
*
388985 ATCACAATGCGAAATGAAA
1 ATCACAACGCGAAATGAAA
*
389004 ATCGCAACGCGAAATGAAA
1 ATCACAACGCGAAATGAAA
*
389023 ATCGCAACG
1 ATCACAACG
389032 ACAAAATCGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.47, C:0.21, G:0.19, T:0.13
Consensus pattern (19 bp):
ATCACAACGCGAAATGAAA
Found at i:389043 original size:33 final size:33
Alignment explanation
Indices: 389001--389064 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 33
388991 ATGCGAAATG
389001 AAAATCGCAACGCGAAA-TGAAAATCGCAACGAC
1 AAAATCGCAACGCGAAACT-AAAATCGCAACGAC
*
389034 AAAATCGCAACGCGAAACTAAAATTGCAACG
1 AAAATCGCAACGCGAAACTAAAATCGCAACG
389065 CGAAACTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.48, C:0.23, G:0.17, T:0.11
Consensus pattern (33 bp):
AAAATCGCAACGCGAAACTAAAATCGCAACGAC
Found at i:389062 original size:19 final size:19
Alignment explanation
Indices: 389001--389074 Score: 88
Period size: 19 Copynumber: 4.2 Consensus size: 19
388991 ATGCGAAATG
389001 AAAATCGCAACGCGAAA-T
1 AAAATCGCAACGCGAAACT
389019 GAAAATCGCAA--CG--AC-
1 -AAAATCGCAACGCGAAACT
389034 AAAATCGCAACGCGAAACT
1 AAAATCGCAACGCGAAACT
*
389053 AAAATTGCAACGCGAAACT
1 AAAATCGCAACGCGAAACT
389072 AAA
1 AAA
389075 TTCGTGTTGC
Statistics
Matches: 48, Mismatches: 1, Indels: 12
0.79 0.02 0.20
Matches are distributed among these distances:
14 10 0.21
15 1 0.02
16 2 0.04
17 2 0.04
18 2 0.04
19 31 0.65
ACGTcount: A:0.50, C:0.23, G:0.16, T:0.11
Consensus pattern (19 bp):
AAAATCGCAACGCGAAACT
Found at i:389097 original size:19 final size:19
Alignment explanation
Indices: 389075--389225 Score: 89
Period size: 19 Copynumber: 8.7 Consensus size: 19
389065 CGAAACTAAA
*
389075 TTCGTGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
389094 TTCGCTTTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
389109 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
389127 TTCGCGTTGCGATTCTC--
1 TTCGCGTTGCGATTTTCAT
*
389144 TT---GTTGTGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
389160 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
389175 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* **
389193 TTCGCATTGCGATAGTCAT
1 TTCGCGTTGCGATTTTCAT
389212 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
389226 AGACATTAGA
Statistics
Matches: 97, Mismatches: 19, Indels: 31
0.66 0.13 0.21
Matches are distributed among these distances:
14 27 0.28
16 8 0.08
17 8 0.08
19 44 0.45
20 10 0.10
ACGTcount: A:0.11, C:0.23, G:0.21, T:0.46
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:389122 original size:33 final size:33
Alignment explanation
Indices: 389080--389205 Score: 207
Period size: 33 Copynumber: 3.8 Consensus size: 33
389070 CTAAATTCGT
* *
389080 GTTGCGATTTTCATTTCGCTTTGCGATTCCCTC
1 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
* *
389113 GTTGCGATTTTCATTTCGCGTTGCGATTCTCTT
1 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
*
389146 GTTGTGATTTTCATTTCGCATTGCGATTCTCTC
1 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
389179 GTTGCGATTTTCATTTCGCATTGCGAT
1 GTTGCGATTTTCATTTCGCATTGCGAT
389206 AGTCATTTCC
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 86 1.00
ACGTcount: A:0.11, C:0.22, G:0.20, T:0.47
Consensus pattern (33 bp):
GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
Found at i:389224 original size:20 final size:19
Alignment explanation
Indices: 389178--389232 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
389168 GCGATTCTCT
**
389178 CGTTGCGATTTTCATTTCG
1 CGTTGCGATAGTCATTTCG
*
389197 CATTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTT-CG
*
389217 CGTTGCGATAGACATT
1 CGTTGCGATAGTCATT
389233 AGAATGATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCG
Found at i:391766 original size:24 final size:24
Alignment explanation
Indices: 391732--391785 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
391722 CTGAAACATC
*
391732 ATCAAAATCCGAGTATTGACCAAT
1 ATCAAAATCCGAGTATTGACCAAG
* *
391756 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
391780 ATCAAA
1 ATCAAA
391786 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:392651 original size:20 final size:20
Alignment explanation
Indices: 392525--392721 Score: 139
Period size: 20 Copynumber: 9.7 Consensus size: 20
392515 GATTATGTAT
*
392525 TATCTCGTTGCGATAGTCAG
1 TATCGCGTTGCGATAGTCAG
* ** *
392545 AATCTTGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
* *
392565 AATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
*
392585 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
* * * *
392605 TATCACGTTGCAATTTTGT-AT
1 TATCGCGTTGCGA--TAGTCAG
392626 TATCGCGTTGCGATAGTCAG
1 TATCGCGTTGCGATAGTCAG
* **
392646 TATCGCATTGCGATTTTCCA-
1 TATCGCGTTGCGATAGT-CAG
* * * *
392666 AATTCGCATTGCGATTTTGT-AT
1 TA-TCGCGTTGCGA--TAGTCAG
392688 TATCGCGTTGCGATAGTCAG
1 TATCGCGTTGCGATAGTCAG
*
392708 TATCGCATTGCGAT
1 TATCGCGTTGCGAT
392722 TTTCCAAATT
Statistics
Matches: 143, Mismatches: 25, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
19 6 0.04
20 95 0.66
21 36 0.25
22 3 0.02
23 3 0.02
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (20 bp):
TATCGCGTTGCGATAGTCAG
Found at i:392662 original size:41 final size:41
Alignment explanation
Indices: 392585--392662 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
392575 CGAAAGTCAG
*
392585 TATCGCGTTGCGAAAGTCAGTATCACGTTGCAATTTTGTAT
1 TATCGCGTTGCGAAAGTCAGTATCACATTGCAATTTTGTAT
* * *
392626 TATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTT
1 TATCGCGTTGCGAAAGTCAGTATCACATTGCAATTTT
392663 CCAAATTCGC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (41 bp):
TATCGCGTTGCGAAAGTCAGTATCACATTGCAATTTTGTAT
Found at i:392674 original size:21 final size:20
Alignment explanation
Indices: 392648--392761 Score: 95
Period size: 21 Copynumber: 5.5 Consensus size: 20
392638 ATAGTCAGTA
392648 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTT-CAAAT
** *
392669 TCGCATTGCGATTTTGTATT
1 TCGCATTGCGATTTTCAAAT
* ** *
392689 ATCGCGTTGCGATAGTC-AGT
1 -TCGCATTGCGATTTTCAAAT
392709 ATCGCATTGCGATTTTCCAAAT
1 -TCGCATTGCGATTTT-CAAAT
* **
392731 TCGCATTGCGATTTACTTAT
1 TCGCATTGCGATTTTCAAAT
392751 TCGCATTGCGA
1 TCGCATTGCGA
392762 ATTGGGAAAA
Statistics
Matches: 75, Mismatches: 15, Indels: 7
0.77 0.15 0.07
Matches are distributed among these distances:
20 31 0.41
21 42 0.56
22 2 0.03
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (20 bp):
TCGCATTGCGATTTTCAAAT
Done.