Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008282.1 Hibiscus syriacus cultivar Beakdansim tig00110944_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1335609
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 5 of 8
Found at i:766164 original size:37 final size:36
Alignment explanation
Indices: 766105--766224 Score: 156
Period size: 35 Copynumber: 3.3 Consensus size: 36
766095 TATCCATTAT
* *
766105 CATTTTTC-AACAAACATATACCAAACTTTGAAAAA
1 CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAA
*
766140 CTATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 C-ATTTTTCAAAGAAACATTTACCAAACTTTGAAAAA
*
766177 CA-TTTTCGAAA-AAACATTTACCAAACTTTGAAAAT
1 CATTTTTC-AAAGAAACATTTACCAAACTTTGAAAAA
766212 CATTTTTTCAAAG
1 CA-TTTTTCAAAG
766225 TTGGTTGCCA
Statistics
Matches: 75, Mismatches: 4, Indels: 10
0.84 0.04 0.11
Matches are distributed among these distances:
35 31 0.41
36 14 0.19
37 30 0.40
ACGTcount: A:0.44, C:0.18, G:0.05, T:0.33
Consensus pattern (36 bp):
CATTTTTCAAAGAAACATTTACCAAACTTTGAAAAA
Found at i:767691 original size:2 final size:2
Alignment explanation
Indices: 767684--767714 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
767674 TTCGCTCTTT
767684 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
767715 GCTCGGCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:770432 original size:6 final size:6
Alignment explanation
Indices: 770421--770455 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
770411 CCATAGATAA
770421 GCATGT GCATGT GCATGT GCATGT GCATGT GCATG
1 GCATGT GCATGT GCATGT GCATGT GCATGT GCATG
770456 GGCTGAATGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.17, G:0.34, T:0.31
Consensus pattern (6 bp):
GCATGT
Found at i:770661 original size:31 final size:33
Alignment explanation
Indices: 770624--770686 Score: 94
Period size: 31 Copynumber: 2.0 Consensus size: 33
770614 TTTTTAATTA
* *
770624 TTTCAATTATAGTTTTGA-AC-TTTAATTTTAG
1 TTTCAATTATAGTATTGAGACGTTAAATTTTAG
770655 TTTCAATTATAGTATTGAGACGTTAAATTTTA
1 TTTCAATTATAGTATTGAGACGTTAAATTTTA
770687 ACGACACGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 17 0.61
32 2 0.07
33 9 0.32
ACGTcount: A:0.32, C:0.06, G:0.11, T:0.51
Consensus pattern (33 bp):
TTTCAATTATAGTATTGAGACGTTAAATTTTAG
Found at i:781707 original size:21 final size:20
Alignment explanation
Indices: 781644--781718 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
781634 TGACCAACAA
* * *
781644 AATCGCAATGCGAAAT-AAA
1 AATCGCAACGCGATATGAAG
* **
781663 AATCGCAACGCGATCTCCAG
1 AATCGCAACGCGATATGAAG
781683 AATCGCAACGCGATTATGAAG
1 AATCGCAACGCGA-TATGAAG
*
781704 AATCGCAATGCGATA
1 AATCGCAACGCGATA
781719 GTACAAATTC
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
19 13 0.29
20 16 0.36
21 16 0.36
ACGTcount: A:0.40, C:0.23, G:0.20, T:0.17
Consensus pattern (20 bp):
AATCGCAACGCGATATGAAG
Found at i:781771 original size:20 final size:20
Alignment explanation
Indices: 781746--781998 Score: 170
Period size: 20 Copynumber: 12.5 Consensus size: 20
781736 GATTTTCCAG
**
781746 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATCCGAA
**
781766 AATCGCAACGCGAA-CATATA
1 AATCGCAACGCGAATCCGA-A
* * * *
781786 AATCTCAACGCGATTCTGAC
1 AATCGCAACGCGAATCCGAA
* * *
781806 TATCGCAACGAGTATCCGTAA
1 AATCGCAACGCGAATCCG-AA
* *
781827 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGAA
**
781847 AATCGCAACGAC-AATATGTAA
1 AATCGCAACG-CGAATCCG-AA
* *
781868 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGAA
* * *
781888 AATCGCAACGCGTATCTGTA
1 AATCGCAACGCGAATCCGAA
* * *
781908 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATCCGAA
* * *
781928 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATCCGAA
*
781948 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGAATCCG-AA
* *
781969 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGAA
781989 AATCGCAACG
1 AATCGCAACG
781999 GGATTTTTAA
Statistics
Matches: 182, Mismatches: 42, Indels: 18
0.75 0.17 0.07
Matches are distributed among these distances:
19 1 0.01
20 131 0.72
21 50 0.27
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAATCCGAA
Found at i:781849 original size:61 final size:61
Alignment explanation
Indices: 781807--781957 Score: 232
Period size: 61 Copynumber: 2.5 Consensus size: 61
781797 GATTCTGACT
781807 ATCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTAAATCGCAACGACAATATGTAAA
1 ATCGCAACGAGTATCCGT-AAATCGCAACGCGTATCCGTAAATCGCAACGACAATATGTAAA
* * * *
781869 ATCGCAACGCGTATCCGTAAATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGT-AA
1 ATCGCAACGAGTATCCGTAAATCGCAACGCGTATCCGTAAATCGCAACGACAATATGTAAA
* *
781929 ATCGCAATGCGTATCCGTAAATCGCAACG
1 ATCGCAACGAGTATCCGTAAATCGCAACG
781958 ACAATACGTA
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
60 30 0.36
61 37 0.44
62 17 0.20
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.20
Consensus pattern (61 bp):
ATCGCAACGAGTATCCGTAAATCGCAACGCGTATCCGTAAATCGCAACGACAATATGTAAA
Found at i:781852 original size:41 final size:40
Alignment explanation
Indices: 781746--781998 Score: 230
Period size: 41 Copynumber: 6.2 Consensus size: 40
781736 GATTTTCCAG
* * * **
781746 AATCGCAACGCGAATATGAAAATCGCAACGCG-AACATATA
1 AATCGCAACGCGAATACGTAAATCGCAACGCGTATC-CGTA
* * * *
781786 AATCTCAACGCG-ATTC-TGACTATCGCAACGAGTATCCGTAA
1 AATCGCAACGCGAATACGT-A-AATCGCAACGCGTATCCGT-A
* * *
781827 AATCGCAACGCGTATCCGTAAATCGCAACGACAATAT--GTAA
1 AATCGCAACGCGAATACGTAAATCGCAACG-C-GTATCCGT-A
* * *
781868 AATCGCAACGCGTATCCGTAAATCGCAACGCGTATCTGTA
1 AATCGCAACGCGAATACGTAAATCGCAACGCGTATCCGTA
* *
781908 AATCGCAACGAGAATACGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATACGTAAATCGCAACGCGTATCCGTA
781948 AATCGCAACGAC-AATACGTAAAATCGCAACGCGTATCCGTA
1 AATCGCAACG-CGAATACGT-AAATCGCAACGCGTATCCGTA
781989 AATCGCAACG
1 AATCGCAACG
781999 GGATTTTTAA
Statistics
Matches: 179, Mismatches: 22, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
39 6 0.03
40 76 0.42
41 89 0.50
42 4 0.02
43 4 0.02
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.19
Consensus pattern (40 bp):
AATCGCAACGCGAATACGTAAATCGCAACGCGTATCCGTA
Found at i:781950 original size:101 final size:102
Alignment explanation
Indices: 781746--782003 Score: 348
Period size: 101 Copynumber: 2.5 Consensus size: 102
781736 GATTTTCCAG
* ** * *
781746 AATCGCAACG-CGAATATG-AAAATCGCAACGCG-AACATATAAATCTCAACGCGATTCTGACTA
1 AATCGCAACGAC-AATATGTAAAATCGCAACGCGTATC-CGTAAATCGCAACGCGATTCTGACAA
* *
781808 TCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTA
64 TCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTA
781847 AATCGCAACGACAATATGTAAAATCGCAACGCGTATCCGTAAATCGCAACGCG-TATCTGTA-AA
1 AATCGCAACGACAATATGTAAAATCGCAACGCGTATCCGTAAATCGCAACGCGAT-TCTG-ACAA
*
781910 TCGCAACGAGAATACGT-AAATCGCAATGCGTATCCGTA
64 TCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTA
* *
781948 AATCGCAACGACAATACGTAAAATCGCAACGCGTATCCGTAAATCGCAACGGGATT
1 AATCGCAACGACAATATGTAAAATCGCAACGCGTATCCGTAAATCGCAACGCGATT
782004 TTTAAAGCGC
Statistics
Matches: 141, Mismatches: 10, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
101 89 0.63
102 49 0.35
103 3 0.02
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.20
Consensus pattern (102 bp):
AATCGCAACGACAATATGTAAAATCGCAACGCGTATCCGTAAATCGCAACGCGATTCTGACAATC
GCAACGAGAATACGTAAAATCGCAACGCGTATCCGTA
Found at i:782620 original size:21 final size:21
Alignment explanation
Indices: 782559--782636 Score: 83
Period size: 20 Copynumber: 3.9 Consensus size: 21
782549 TTCTAAACTT
**
782559 AAAATCGCAAC-ATAAAAATG
1 AAAATCGCAACGACGAAAATG
782579 AAAATCGCAAC-ACGAAAATG
1 AAAATCGCAACGACGAAAATG
**
782599 ACTATCGCAACGA-GAGAAATG
1 AAAATCGCAACGACGA-AAATG
782620 AAAATCGCAACG-CGAAA
1 AAAATCGCAACGACGAAA
782637 CCAAAATCGC
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
20 31 0.63
21 18 0.37
ACGTcount: A:0.53, C:0.19, G:0.17, T:0.12
Consensus pattern (21 bp):
AAAATCGCAACGACGAAAATG
Found at i:782665 original size:19 final size:19
Alignment explanation
Indices: 782643--782693 Score: 84
Period size: 19 Copynumber: 2.7 Consensus size: 19
782633 GAAACCAAAA
* *
782643 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTAATT
782662 TCGCGTTGCGATTTTAATT
1 TCGCGTTGCGATTTTAATT
782681 TCGCGTTGCGATT
1 TCGCGTTGCGATT
782694 CTCTCGTTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.14, C:0.20, G:0.22, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTAATT
Found at i:782766 original size:20 final size:20
Alignment explanation
Indices: 782698--782753 Score: 112
Period size: 20 Copynumber: 2.8 Consensus size: 20
782688 GCGATTCTCT
782698 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
782718 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
782738 CGTTGCGATAGTCATT
1 CGTTGCGATAGTCATT
782754 CTCTCGTTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.36
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:783471 original size:21 final size:20
Alignment explanation
Indices: 783447--783558 Score: 113
Period size: 21 Copynumber: 5.5 Consensus size: 20
783437 TCAGGATACG
* *
783447 CGTTGCGATATTACGTATTGT
1 CGTTGCGAT-TTACGGATCGT
783468 CGTTGCGATTTACGGATACG-
1 CGTTGCGATTTACGGAT-CGT
* *
783488 CGTTGCGATTTTACGTATTGT
1 CGTTGCGA-TTTACGGATCGT
783509 CGTTGCGATTTACGGATACG-
1 CGTTGCGATTTACGGAT-CGT
783529 CGTTGCGATTTTACGGATAC-T
1 CGTTGCGA-TTTACGGAT-CGT
783550 CGTTGCGAT
1 CGTTGCGAT
783559 AGTCAGAATC
Statistics
Matches: 79, Mismatches: 6, Indels: 13
0.81 0.06 0.13
Matches are distributed among these distances:
20 33 0.42
21 46 0.58
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.38
Consensus pattern (20 bp):
CGTTGCGATTTACGGATCGT
Found at i:783502 original size:41 final size:41
Alignment explanation
Indices: 783440--783558 Score: 202
Period size: 41 Copynumber: 2.9 Consensus size: 41
783430 CTATTGCTCA
*
783440 GGATACGCGTTGCGATATTACGTATTGTCGTTGCGATTTAC
1 GGATACGCGTTGCGATTTTACGTATTGTCGTTGCGATTTAC
783481 GGATACGCGTTGCGATTTTACGTATTGTCGTTGCGATTTAC
1 GGATACGCGTTGCGATTTTACGTATTGTCGTTGCGATTTAC
* **
783522 GGATACGCGTTGCGATTTTACGGATACTCGTTGCGAT
1 GGATACGCGTTGCGATTTTACGTATTGTCGTTGCGAT
783559 AGTCAGAATC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.18, C:0.18, G:0.28, T:0.36
Consensus pattern (41 bp):
GGATACGCGTTGCGATTTTACGTATTGTCGTTGCGATTTAC
Found at i:783577 original size:82 final size:81
Alignment explanation
Indices: 783440--783621 Score: 190
Period size: 82 Copynumber: 2.2 Consensus size: 81
783430 CTATTGCTCA
* * ** * * *
783440 GGATACGCGTTGCGATATTACGTATTGTCGTTGCGATTTACGGATACGCGTTGCGATTT-TACGT
1 GGATACGCGTTGCGATTTTACGGATACTCGTTGCGATTCACGAATACGCATTGCGATTTATACGT
*
783504 ATTGTCGTTGCGATTTAC
66 -TCG-CGTTGCGATTTAC
*
783522 GGATACGCGTTGCGATTTTACGGATACTCGTTGCGATAGTCA-GAAT-CGCATTGCGATTTATAT
1 GGATACGCGTTGCGATTTTACGGATACTCGTTGCGAT--TCACGAATACGCATTGCGATTTATAC
*
783585 GTTCGCGTTGCGATTTTC
64 GTTCGCGTTGCGATTTAC
** *
783603 ATATTCGCGTTGCGATTTT
1 GGATACGCGTTGCGATTTT
783622 CATATTCGCG
Statistics
Matches: 84, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
81 28 0.33
82 47 0.56
83 7 0.08
84 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.38
Consensus pattern (81 bp):
GGATACGCGTTGCGATTTTACGGATACTCGTTGCGATTCACGAATACGCATTGCGATTTATACGT
TCGCGTTGCGATTTAC
Found at i:783590 original size:20 final size:20
Alignment explanation
Indices: 783567--783659 Score: 143
Period size: 20 Copynumber: 4.7 Consensus size: 20
783557 ATAGTCAGAA
* *
783567 TCGCATTGCGATTTAT-ATGT
1 TCGCGTTGCGATTT-TCATAT
783587 TCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCATAT
783607 TCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCATAT
783627 TCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCATAT
*
783647 TCGCGTTGTGATT
1 TCGCGTTGCGATT
783660 CTGGAAAATC
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
19 1 0.01
20 68 0.99
ACGTcount: A:0.15, C:0.18, G:0.22, T:0.45
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCATAT
Found at i:783616 original size:40 final size:40
Alignment explanation
Indices: 783445--783659 Score: 157
Period size: 41 Copynumber: 5.3 Consensus size: 40
783435 GCTCAGGATA
* * * ** *
783445 CGCGTTGCGATATTACGTATT-GTCGTTGCGATTTACGGATA
1 CGCGTTGCGAT-TTTCATATTCG-CGTTGCGATTTTCATATT
* * ** *
783486 CGCGTTGCGATTTTACGTATT-GTCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTT-CATATTCG-CGTTGCGATTTTCATATT
** * * ** * *
783527 CGCGTTGCGATTTTACGGATACTCGTTGCGATAGTCAGAAT
1 CGCGTTGCGATTTT-CATATTCGCGTTGCGATTTTCATATT
* *
783568 CGCATTGCGATTTAT-ATGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTT-TCATATTCGCGTTGCGATTTTCATATT
783608 CGCGTTGCGATTTTCATATTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTTCATATTCGCGTTGCGATTTTCATATT
*
783648 CGCGTTGTGATT
1 CGCGTTGCGATT
783660 CTGGAAAATC
Statistics
Matches: 147, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 65 0.44
41 80 0.54
42 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.40
Consensus pattern (40 bp):
CGCGTTGCGATTTTCATATTCGCGTTGCGATTTTCATATT
Found at i:786107 original size:26 final size:25
Alignment explanation
Indices: 786078--786139 Score: 72
Period size: 27 Copynumber: 2.4 Consensus size: 25
786068 TTTTTCGGAT
* *
786078 AAAAAACCGGTTTTTTATCCGGTTTGA
1 AAAAAACCGGTTTTTAATCCGG--TAA
*
786105 AAAAAACCGCTTTTTAATCCGGT-A
1 AAAAAACCGGTTTTTAATCCGGTAA
786129 AAAAAACCGGT
1 AAAAAACCGGT
786140 CGTTCAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 11 0.34
25 1 0.03
27 20 0.62
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (25 bp):
AAAAAACCGGTTTTTAATCCGGTAA
Found at i:786249 original size:27 final size:27
Alignment explanation
Indices: 786213--786270 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 27
786203 AAAAAACCGG
*
786213 TTTTTCC-AAAATCCGAT-TTCGGATAT
1 TTTTTCCAAAAATCAGATATTCGGAT-T
786239 TTTTTACCAAAAATCAGATATTCGGATT
1 TTTTT-CCAAAAATCAGATATTCGGATT
786267 TTTT
1 TTTT
786271 GTGCACCTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 14 0.50
29 7 0.25
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (27 bp):
TTTTTCCAAAAATCAGATATTCGGATT
Found at i:787156 original size:10 final size:10
Alignment explanation
Indices: 787117--787156 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
787107 TTCATTACAC
787117 CAAATTCTCT
1 CAAATTCTCT
*
787127 CAATTTCTCT
1 CAAATTCTCT
*
787137 CAACTTCTCT
1 CAAATTCTCT
*
787147 CAAATACTCT
1 CAAATTCTCT
787157 TATAATCTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.28, C:0.33, G:0.00, T:0.40
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:787215 original size:9 final size:9
Alignment explanation
Indices: 787203--787236 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
787193 TAATATTTTG
787203 TATTTAATT
1 TATTTAATT
*
787212 TATTTAA-G
1 TATTTAATT
787220 TATTTAATT
1 TATTTAATT
787229 TATTTAAT
1 TATTTAAT
787237 ATTTTACTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (9 bp):
TATTTAATT
Found at i:787242 original size:17 final size:17
Alignment explanation
Indices: 787202--787240 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
787192 TTAATATTTT
787202 GTATTTAATTTATTTAA
1 GTATTTAATTTATTTAA
787219 GTATTTAATTTATTTAA
1 GTATTTAATTTATTTAA
787236 -TATTT
1 GTATTT
787241 TACTTAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (17 bp):
GTATTTAATTTATTTAA
Found at i:788334 original size:21 final size:21
Alignment explanation
Indices: 788308--788352 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
788298 GATTTCTGGG
* *
788308 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
788329 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
788350 CAA
1 CAA
788353 ACGACAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:789012 original size:24 final size:25
Alignment explanation
Indices: 788985--789033 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
788975 ATATGGCATG
* *
788985 TGATATGAAA-GTGTATATGTGAAA
1 TGATATGAAATATATATATGTGAAA
789009 TGATATGAAATATATATATGTGAAA
1 TGATATGAAATATATATATGTGAAA
789034 ACAAAGTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.45, C:0.00, G:0.20, T:0.35
Consensus pattern (25 bp):
TGATATGAAATATATATATGTGAAA
Found at i:789346 original size:31 final size:31
Alignment explanation
Indices: 789308--789463 Score: 242
Period size: 31 Copynumber: 5.0 Consensus size: 31
789298 AAGGTCGAGG
789308 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
789339 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* *
789370 GTTTACCTATGTTCTTCGGAACATACGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
789401 GTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* * *
789432 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
789463 G
1 G
789464 GTCCTTCGGG
Statistics
Matches: 115, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
31 114 0.99
32 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:792465 original size:21 final size:21
Alignment explanation
Indices: 792439--792483 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
792429 GATTTCTGGG
* *
792439 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
792460 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
792481 CAA
1 CAA
792484 ACGACAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:793143 original size:24 final size:25
Alignment explanation
Indices: 793116--793164 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
793106 ATATGGCATG
* *
793116 TGATATGAAA-GTGTATATGTGAAA
1 TGATATGAAATATATATATGTGAAA
793140 TGATATGAAATATATATATGTGAAA
1 TGATATGAAATATATATATGTGAAA
793165 ACAAAGTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.45, C:0.00, G:0.20, T:0.35
Consensus pattern (25 bp):
TGATATGAAATATATATATGTGAAA
Found at i:793477 original size:31 final size:31
Alignment explanation
Indices: 793439--793594 Score: 242
Period size: 31 Copynumber: 5.0 Consensus size: 31
793429 AAGGTCGAGG
793439 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
793470 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* *
793501 GTTTACCTATGTTCTTCGGAACATACGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
793532 GTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* * *
793563 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
793594 G
1 G
793595 GTCCTTCGGG
Statistics
Matches: 115, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
31 114 0.99
32 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:796248 original size:13 final size:13
Alignment explanation
Indices: 796207--796250 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
796197 TATTTAGTAC
*
796207 TTTTTATTGTAGT
1 TTTTTATTGTAAT
* * *
796220 TGTTTATTGGACT
1 TTTTTATTGTAAT
796233 TTTTTATTGTAAT
1 TTTTTATTGTAAT
796246 TTTTT
1 TTTTT
796251 TATTTATCAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.16, C:0.02, G:0.14, T:0.68
Consensus pattern (13 bp):
TTTTTATTGTAAT
Found at i:796344 original size:34 final size:34
Alignment explanation
Indices: 796289--796359 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
796279 CGTTAATATG
796289 GTTGGATTTATTTTAATTTATTTTG-TTAAATTT
1 GTTGGATTTATTTTAATTTATTTTGCTTAAATTT
*
796322 GTTGGACTTT-TTGTTAATTTATTTTGCTTAATTTT
1 GTTGGA-TTTATT-TTAATTTATTTTGCTTAAATTT
796357 GTT
1 GTT
796360 TATTACCATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
33 8 0.24
34 16 0.47
35 10 0.29
ACGTcount: A:0.20, C:0.03, G:0.14, T:0.63
Consensus pattern (34 bp):
GTTGGATTTATTTTAATTTATTTTGCTTAAATTT
Found at i:800641 original size:35 final size:37
Alignment explanation
Indices: 800578--800646 Score: 97
Period size: 35 Copynumber: 1.9 Consensus size: 37
800568 TAAAATTTAA
*
800578 AAAAAATTCAAATTCAAAGAAAAATAATAATTGTATT
1 AAAAAATTCAAATACAAAGAAAAATAATAATTGTATT
* *
800615 AAAAAA-T-AAATACAAAGTAAATTAATAATTGT
1 AAAAAATTCAAATACAAAGAAAAATAATAATTGT
800647 GAAAAATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 22 0.76
36 1 0.03
37 6 0.21
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.29
Consensus pattern (37 bp):
AAAAAATTCAAATACAAAGAAAAATAATAATTGTATT
Found at i:801509 original size:24 final size:24
Alignment explanation
Indices: 801458--801546 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
801448 AGAATATGCA
*
801458 TCGAAGTG-CCACATAG-ATTTATC
1 TCGAAG-GACCACATAGAATTTGTC
* ** *
801481 CCGAAGGACTGCGTAGAATTTGTC
1 TCGAAGGACCACATAGAATTTGTC
801505 TCGAAGGACCACATAGAATTTGTAC
1 TCGAAGGACCACATAGAATTTGT-C
* *
801530 -CAAAGGACCACGTAGAA
1 TCGAAGGACCACATAGAA
801547 CCCTCGACTC
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
22 1 0.02
23 10 0.19
24 40 0.77
25 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (24 bp):
TCGAAGGACCACATAGAATTTGTC
Found at i:803394 original size:3 final size:3
Alignment explanation
Indices: 803386--803417 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
803376 ATGCTAAAGT
803386 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
803418 TCGATGATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:806181 original size:14 final size:14
Alignment explanation
Indices: 806164--806237 Score: 53
Period size: 16 Copynumber: 5.1 Consensus size: 14
806154 TCCTCTTTTT
806164 TTATTTATATTATA
1 TTATTTATATTATA
* *
806178 TTATTTTTAATATA
1 TTATTTATATTATA
*
806192 TATATCTTATA-T-CA
1 T-TAT-TTATATTATA
806206 TTATTTATATATATA
1 TTATTTATAT-TATA
*
806221 TATATATATATATATA
1 T-TATTTATAT-TATA
806237 T
1 T
806238 AGACGTATTA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
12 5 0.10
13 3 0.06
14 16 0.33
15 6 0.12
16 18 0.38
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (14 bp):
TTATTTATATTATA
Found at i:806185 original size:23 final size:24
Alignment explanation
Indices: 806127--806185 Score: 57
Period size: 25 Copynumber: 2.4 Consensus size: 24
806117 TAGATTTTTA
*
806127 ATTATATTTTTTATTTATTTACTAT
1 ATTATTTTTTTTATTTA-TTACTAT
* *
806152 ATTCCTCTTTTTTTATTTA-TATTAT
1 ATT-AT-TTTTTTTATTTATTACTAT
806177 ATTATTTTT
1 ATTATTTTT
806186 AATATATATA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
23 4 0.14
24 1 0.04
25 11 0.39
26 1 0.04
27 11 0.39
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (24 bp):
ATTATTTTTTTTATTTATTACTAT
Found at i:806194 original size:2 final size:2
Alignment explanation
Indices: 806187--806238 Score: 63
Period size: 2 Copynumber: 26.5 Consensus size: 2
806177 ATTATTTTTA
* *
806187 AT AT AT AT AT CT -T AT AT CAT -T AT TT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT
806228 AT AT AT AT AT A
1 AT AT AT AT AT A
806239 GACGTATTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
1 2 0.05
2 40 0.91
3 2 0.05
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:806201 original size:25 final size:27
Alignment explanation
Indices: 806173--806223 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
806163 TTTATTTATA
*
806173 TTATATTATT-TTTA-ATATATATATC
1 TTATATCATTATTTATATATATATATC
806198 TTATATCATTATTTATATATATATAT
1 TTATATCATTATTTATATATATATAT
806224 ATATATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 9 0.39
26 4 0.17
27 10 0.43
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (27 bp):
TTATATCATTATTTATATATATATATC
Found at i:806289 original size:15 final size:15
Alignment explanation
Indices: 806271--806326 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
806261 TACTATGTAT
*
806271 ATATTTTTTTTCTTA
1 ATATTTATTTTCTTA
806286 ATATTATATTTT-TT-
1 ATATT-TATTTTCTTA
*
806300 ATATATATTTTCTTA
1 ATATTTATTTTCTTA
806315 ATATTCTATTTT
1 ATATT-TATTTT
806327 TGTTTTATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
13 6 0.18
14 6 0.18
15 11 0.32
16 11 0.32
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (15 bp):
ATATTTATTTTCTTA
Found at i:806380 original size:45 final size:45
Alignment explanation
Indices: 806276--806380 Score: 103
Period size: 45 Copynumber: 2.3 Consensus size: 45
806266 TGTATATATT
* *
806276 TTTTTTCTTAATATTATATTTTTTATATATATTTTCTTAATATTCTA
1 TTTTTTC-TATTATTATATTTTATATATATATTTTCTT-ATATTCTA
806323 TTTTTGT-T-TTATT-TATTTATATATATTATATTTTACTT-TATT-TA
1 TTTTT-TCTATTATTATATTT-TATATA-TATATTTT-CTTATATTCTA
806367 TTTTTTCTATTATT
1 TTTTTTCTATTATT
806381 GTTTTCTCAA
Statistics
Matches: 50, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
43 1 0.02
44 13 0.26
45 18 0.36
46 9 0.18
47 8 0.16
48 1 0.02
ACGTcount: A:0.25, C:0.05, G:0.01, T:0.70
Consensus pattern (45 bp):
TTTTTTCTATTATTATATTTTATATATATATTTTCTTATATTCTA
Found at i:806511 original size:19 final size:17
Alignment explanation
Indices: 806488--806546 Score: 64
Period size: 19 Copynumber: 3.3 Consensus size: 17
806478 GTACACATTA
806488 TTTTTATTTTTCTTAATT
1 TTTTTATTTTT-TTAATT
806506 TCTTTTATCTTTTTTAATT
1 T-TTTTAT-TTTTTTAATT
***
806525 TTTTTATTCCATTAATT
1 TTTTTATTTTTTTAATT
806542 TTTTT
1 TTTTT
806547 CCTTTATCTG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
17 12 0.33
18 7 0.19
19 13 0.36
20 4 0.11
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTTATTTTTTTAATT
Found at i:806608 original size:10 final size:9
Alignment explanation
Indices: 806575--806606 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
806565 TTTTTTAACA
806575 TTTTATTCAT
1 TTTTATT-AT
806585 TTTTATTAT
1 TTTTATTAT
806594 TTTTATTAT
1 TTTTATTAT
806603 TTTT
1 TTTT
806607 TACGTGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 15 0.68
10 7 0.32
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTATTAT
Found at i:813615 original size:21 final size:20
Alignment explanation
Indices: 813587--813649 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 20
813577 CATTTTGGTG
813587 CAGAGGGAATCGATCCCCCC
1 CAGAGGGAATCGATCCCCCC
* *
813607 CATGAGGGAACCGATTCCCCCTA
1 CA-GAGGGAATCGA-TCCCCC-C
813630 CAG-GGGAATCGATACCCCCC
1 CAGAGGGAATCGAT-CCCCCC
813650 TGGGGTTCTG
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
20 3 0.09
21 23 0.66
22 7 0.20
23 2 0.06
ACGTcount: A:0.25, C:0.38, G:0.24, T:0.13
Consensus pattern (20 bp):
CAGAGGGAATCGATCCCCCC
Found at i:814756 original size:28 final size:28
Alignment explanation
Indices: 814716--814769 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
814706 TACATAGCCA
814716 ATGCCTTAGGCTTGGATAATGAAGGTCT
1 ATGCCTTAGGCTTGGATAATGAAGGTCT
814744 ATGCCTTAGGCTTGGATAATGAAGGT
1 ATGCCTTAGGCTTGGATAATGAAGGT
814770 TTATCAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.31
Consensus pattern (28 bp):
ATGCCTTAGGCTTGGATAATGAAGGTCT
Found at i:819362 original size:13 final size:13
Alignment explanation
Indices: 819329--819370 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
819319 CAATCAGAAC
819329 AAAAAGAGAAAAA
1 AAAAAGAGAAAAA
*
819342 AAGCAAAGAGAAAAT
1 AA--AAAGAGAAAAA
819357 AAAAAGAGAAAAA
1 AAAAAGAGAAAAA
819370 A
1 A
819371 CATTGGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 13 0.52
15 12 0.48
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (13 bp):
AAAAAGAGAAAAA
Found at i:820476 original size:32 final size:31
Alignment explanation
Indices: 820440--820559 Score: 132
Period size: 32 Copynumber: 3.7 Consensus size: 31
820430 GGAACAATGA
820440 GGGCATCTTTGAAGATTCAACATCAAATGTTG
1 GGGCATCTTTG-AGATTCAACATCAAATGTTG
* * *
820472 GGGCATTTTTTTAGATTTAACATCAAATGTTG
1 GGGCA-TCTTTGAGATTCAACATCAAATGTTG
* * * *
820504 AGGCATTTTTTGAGATTCAACATCGAATATTG
1 GGGCA-TCTTTGAGATTCAACATCAAATGTTG
*
820536 GGGCATCTTTGGGAATTCAACATC
1 GGGCATCTTTGAG-ATTCAACATC
820560 CTGATGCAAA
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
31 6 0.08
32 65 0.87
33 4 0.05
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (31 bp):
GGGCATCTTTGAGATTCAACATCAAATGTTG
Found at i:821364 original size:106 final size:106
Alignment explanation
Indices: 821182--821427 Score: 323
Period size: 106 Copynumber: 2.3 Consensus size: 106
821172 AATTTCAGAG
* *
821182 CCAATTTCAACTTCACAGCGAAGAATATTGGACTCGAGATAACACAAGTTCAACTTCACAGTGAA
1 CCAATTTCAACTTCACAGCGAAGAATATTGGACTCGAGACAACACAAGTTCAACTTCACAGTAAA
* ** *
821247 GGGACGGCTGGTTGTCAACAAACAATTTTTCAGTTTCAAAA
66 GGGACGACTGGTTGTCAACAAACAATTTCCCAGTTCCAAAA
* * *
821288 CCAATTTCAACTTCACAGTGATGGATATTGGACTCGAGACAACACAAGTTCAACTTCACA-TCAA
1 CCAATTTCAACTTCACAGCGAAGAATATTGGACTCGAGACAACACAAGTTCAACTTCACAGT-AA
* * * *
821352 AGTGATGACTGGTTGTCAACAAACAATTTCCCAGTTCCAGAG
65 AGGGACGACTGGTTGTCAACAAACAATTTCCCAGTTCCAAAA
** * *
821394 CCAATTTCAACTTCATGGCGGAGGATATTGGACT
1 CCAATTTCAACTTCACAGCGAAGAATATTGGACT
821428 TAGAACAATA
Statistics
Matches: 121, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
105 1 0.01
106 120 0.99
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (106 bp):
CCAATTTCAACTTCACAGCGAAGAATATTGGACTCGAGACAACACAAGTTCAACTTCACAGTAAA
GGGACGACTGGTTGTCAACAAACAATTTCCCAGTTCCAAAA
Found at i:821754 original size:102 final size:102
Alignment explanation
Indices: 821576--821762 Score: 236
Period size: 102 Copynumber: 1.8 Consensus size: 102
821566 GACAGTTTCC
* * * *
821576 AAGTTTTATCTCTCTTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATCTTTTCCTTGAAAC
1 AAGTTTTATCTCTCTTGAGACAGTTTCCCTGGAAACAAAACATTTGAATAACTTTCCCTTGAAAC
821641 AAATTTCGTCTC-CTTTGAGACATTTTCTTTTGGAACT
66 AAATTTCGTCTCTC-TTGAGACATTTTCTTTTGGAACT
* * *
821678 AAGTTTTGTCTCTCTTGAGATAGTTTCTCTGGAAACATAAACA-TTGAA-AACATTTCCCTTGAA
1 AAGTTTTATCTCTCTTGAGACAGTTTCCCTGGAAACA-AAACATTTGAATAAC-TTTCCCTTGAA
** *
821741 ATGAATTTTGTCTCTCTTGAGA
64 ACAAATTTCGTCTCTCTTGAGA
821763 TAGTTTCCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
101 2 0.03
102 65 0.90
103 5 0.07
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (102 bp):
AAGTTTTATCTCTCTTGAGACAGTTTCCCTGGAAACAAAACATTTGAATAACTTTCCCTTGAAAC
AAATTTCGTCTCTCTTGAGACATTTTCTTTTGGAACT
Found at i:821776 original size:15 final size:15
Alignment explanation
Indices: 821756--821790 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
821746 TTTTGTCTCT
*
821756 CTTGAGATAGTTTCC
1 CTTGAGACAGTTTCC
*
821771 CTTGAGACAGTTTCT
1 CTTGAGACAGTTTCC
821786 CTTGA
1 CTTGA
821791 AGCATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (15 bp):
CTTGAGACAGTTTCC
Found at i:821977 original size:35 final size:36
Alignment explanation
Indices: 821935--822020 Score: 140
Period size: 36 Copynumber: 2.4 Consensus size: 36
821925 TTGAATACAA
821935 TTTCTCTTGAAACAC-AAAAAAAACCTTTGAA-ATTG
1 TTTCTCTTGAAACACAAAAAAAAACCTTTGAAGA-TG
821970 TTTCTCTTGAAACACAAAAAAAAACCTTTGAAGATG
1 TTTCTCTTGAAACACAAAAAAAAACCTTTGAAGATG
*
822006 TTTCTTTTGAAACAC
1 TTTCTCTTGAAACAC
822021 CAAACCCTCA
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
35 15 0.31
36 32 0.67
37 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (36 bp):
TTTCTCTTGAAACACAAAAAAAAACCTTTGAAGATG
Found at i:823164 original size:14 final size:14
Alignment explanation
Indices: 823145--823184 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
823135 TTCCTCTTTT
823145 TTATTTATATTATA
1 TTATTTATATTATA
*
823159 TTATTTTTATTATA
1 TTATTTATATTATA
823173 TATATCTTATAT
1 T-TAT-TTATAT
823185 CATTATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 14 0.64
15 3 0.14
16 5 0.23
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (14 bp):
TTATTTATATTATA
Found at i:823263 original size:29 final size:29
Alignment explanation
Indices: 823231--823297 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
823221 ATTTACTATG
*
823231 TATATATTTTTTCTTAACATTATATTTTT
1 TATATATTTTTTCTTAACATTATATATTT
* *
823260 TATATATATTTTCTTAATATTATATATTT
1 TATATATTTTTTCTTAACATTATATATTT
*
823289 TATTTATTT
1 TATATATTT
823298 ATTTATATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (29 bp):
TATATATTTTTTCTTAACATTATATATTT
Found at i:823305 original size:21 final size:22
Alignment explanation
Indices: 823279--823325 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
823269 TTTCTTAATA
*
823279 TTATATATTTTAT-TTATTTA-T
1 TTATATATATTATATT-TTTACT
823300 TTATATATATTATATTTTTACT
1 TTATATATATTATATTTTTACT
823322 TTAT
1 TTAT
823326 TTTATTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (22 bp):
TTATATATATTATATTTTTACT
Found at i:823348 original size:30 final size:29
Alignment explanation
Indices: 823276--823348 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 29
823266 TATTTTCTTA
*
823276 ATATTATATATTTTATTTATTTATTTATAT
1 ATATTAT-TTTTTTATTTATTTATTTATAT
* *
823306 ATATTATATTTTTACTTTATTTTATTT-TTT
1 ATATTATTTTTTTA-TTTA-TTTATTTATAT
*
823336 CTATTATTTTTTT
1 ATATTATTTTTTT
823349 CTTAATATCA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 5 0.14
30 24 0.67
31 7 0.19
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (29 bp):
ATATTATTTTTTTATTTATTTATTTATAT
Found at i:826416 original size:15 final size:17
Alignment explanation
Indices: 826396--826428 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
826386 TAATTTTACT
826396 AATATAA-AAGAA-AAA
1 AATATAAGAAGAACAAA
826411 AATATAAGAAGAACAAA
1 AATATAAGAAGAACAAA
826428 A
1 A
826429 GATACCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 5 0.31
17 4 0.25
ACGTcount: A:0.76, C:0.03, G:0.09, T:0.12
Consensus pattern (17 bp):
AATATAAGAAGAACAAA
Found at i:826484 original size:101 final size:100
Alignment explanation
Indices: 826318--826510 Score: 298
Period size: 101 Copynumber: 1.9 Consensus size: 100
826308 TGATTGAAAA
*
826318 AAGAACAAAAAAAATCAAAATTTACGTAAAAAAACTAAAAAGAAAAAACCAACCACGACAGAGAA
1 AAGAACAAAAAAAACCAAAATTTACGTAAAAAAACTAAAAAGAAAAAACCAACCACGACAGAGAA
826383 AACTAATTTTACTAATATAAAAGAAAAAAATATAAG
66 AACTAATTTTACTAATATAAAA-AAAAAAATATAAG
* * * * * *
826419 AAGAACAAAAGATACCAAAATTTTCGTAAAAAAACCTAAACAGAAAAAACCAACTAC-ACATAGA
1 AAGAACAAAAAAAACCAAAATTTACGTAAAAAAA-CTAAAAAGAAAAAACCAACCACGACAGAGA
826483 AAACTAATTTTACTAATATAAAAAAAAA
65 AAACTAATTTTACTAATATAAAAAAAAA
826511 TACAAGACGT
Statistics
Matches: 84, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
100 5 0.06
101 59 0.70
102 20 0.24
ACGTcount: A:0.63, C:0.13, G:0.07, T:0.17
Consensus pattern (100 bp):
AAGAACAAAAAAAACCAAAATTTACGTAAAAAAACTAAAAAGAAAAAACCAACCACGACAGAGAA
AACTAATTTTACTAATATAAAAAAAAAAATATAAG
Found at i:832411 original size:3 final size:3
Alignment explanation
Indices: 832403--832451 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
832393 TGTAAACATA
* * *
832403 AAT AAT AAT AAT AAT AA- AAT AAC GAT AAT AAT AAT AATT AAT TAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
832448 AAT A
1 AAT A
832452 TTATTGGTAG
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:835414 original size:20 final size:20
Alignment explanation
Indices: 835391--835429 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
835381 GAACAGTACG
*
835391 GTGAACAGTGTTACAGTGCC
1 GTGAACAGTGCTACAGTGCC
835411 GTGAACAGTGCTACAGTGC
1 GTGAACAGTGCTACAGTGC
835430 ATCGATGCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.23
Consensus pattern (20 bp):
GTGAACAGTGCTACAGTGCC
Found at i:835447 original size:21 final size:21
Alignment explanation
Indices: 835421--835460 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
835411 GTGAACAGTG
835421 CTACAGTGCATCGATGCATTA
1 CTACAGTGCATCGATGCATTA
835442 CTACAGTGCATCGATGCAT
1 CTACAGTGCATCGATGCAT
835461 AAAAACTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (21 bp):
CTACAGTGCATCGATGCATTA
Found at i:836049 original size:23 final size:23
Alignment explanation
Indices: 835982--836063 Score: 69
Period size: 23 Copynumber: 3.5 Consensus size: 23
835972 CGTATAAATT
835982 TGCACCGAAGTGCCACGTAG-AA
1 TGCACCGAAGTGCCACGTAGAAA
** * *
836004 TTTATCTCGAA-TGACAGCATAGAAA
1 TGCA-C-CGAAGTGCCA-CGTAGAAA
*
836029 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAA
*
836052 TGCACCGTAGTG
1 TGCACCGAAGTG
836064 ACATATAATA
Statistics
Matches: 45, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
22 2 0.04
23 26 0.58
24 13 0.29
25 4 0.09
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAA
Found at i:836319 original size:30 final size:30
Alignment explanation
Indices: 836283--836345 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
836273 TCATATCGCG
*
836283 TAGACATATTATTTCCATACCTTTATCACA
1 TAGACATATCATTTCCATACCTTTATCACA
836313 TAGACATATCATTTCCATACCTTTATCACA
1 TAGACATATCATTTCCATACCTTTATCACA
836343 TAG
1 TAG
836346 CTCATATAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.38
Consensus pattern (30 bp):
TAGACATATCATTTCCATACCTTTATCACA
Found at i:838025 original size:131 final size:131
Alignment explanation
Indices: 837758--838199 Score: 491
Period size: 131 Copynumber: 3.4 Consensus size: 131
837748 TGGTCATCTA
* * * *
837758 AGGGGATGACATGGTTTCTACGCGATGAGGACGACATGCCATCTTTAAGG--GGTGATAACATGG
1 AGGGGATGACACGGTTCCTACGCGATGAGGACGGCAGGCCATCTTT-AGGAAGGTGATAACATGG
* * * *
837821 TTCCTCTGTGATGAGGACAGCTGGTTATCTGGGGTGACATGGCT-TCTACGTGATGAGGAGGTCT
65 TTCCTATGTGATGAGGAC-GGTGGTTATCTGGGGTGACACGGCTCT-TACGTGATGAGGAGGTTT
*
837885 AGTC
128 GGTC
* * * * * *
837889 GGGGGATGGCATGGTTCCTACGTGATGAGAACGGCAAGCCATCTTTAGGAATGGTGATAACATGG
1 AGGGGATGACACGGTTCCTACGCGATGAGGACGGCAGGCCATCTTTAGGAA-GGTGATAACATGG
* * * *
837954 TTCCTATGTGATTAGGACGGTCGTTATCTGGGGTGACACGTCTCTTACGTGATGAGGAGATTTGG
65 TTCCTATGTGATGAGGACGGTGGTTATCTGGGGTGACACGGCTCTTACGTGATGAGGAGGTTTGG
838019 TC
130 TC
* * * *
838021 -GGGGATGACACGATTCCTACGTGATGAGGACAGTAGGCCATCTTTAGGAA--TGATAACATGGT
1 AGGGGATGACACGGTTCCTACGCGATGAGGACGGCAGGCCATCTTTAGGAAGGTGATAACATGGT
* * * * * *
838083 TCCTACGTGATGAGGATGGTTGGTTATCTAGGAGTGACACGGCTCCTACATGATAAGGAGGTTTG
66 TCCTATGTGATGAGGACGG-TGGTTATCT-GGGGTGACACGGCTCTTACGTGATGAGGAGGTTTG
838148 GTC
129 GTC
* * * *
838151 AGTGGATGACACGGTTCCTACACCATGAGGATGGCAGGCCATCTTTAGG
1 AGGGGATGACACGGTTCCTACGCGATGAGGACGGCAGGCCATCTTTAGG
838200 GATAATGTCT
Statistics
Matches: 263, Mismatches: 41, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
128 28 0.11
129 8 0.03
130 35 0.13
131 122 0.46
132 40 0.15
133 30 0.11
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.27
Consensus pattern (131 bp):
AGGGGATGACACGGTTCCTACGCGATGAGGACGGCAGGCCATCTTTAGGAAGGTGATAACATGGT
TCCTATGTGATGAGGACGGTGGTTATCTGGGGTGACACGGCTCTTACGTGATGAGGAGGTTTGGT
C
Found at i:839004 original size:21 final size:21
Alignment explanation
Indices: 838977--839029 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
838967 GATTTTATCT
838977 CGAAGGACCACATAGATGTCC
1 CGAAGGACCACATAGATGTCC
*
838998 TGAAGGACCACATAGATGTCC
1 CGAAGGACCACATAGATGTCC
*
839019 CGAATGACCAC
1 CGAAGGACCAC
839030 TCTATAAGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.34, C:0.28, G:0.23, T:0.15
Consensus pattern (21 bp):
CGAAGGACCACATAGATGTCC
Found at i:840457 original size:21 final size:21
Alignment explanation
Indices: 840428--840483 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
840418 TCTTGTTATT
*
840428 TTAATCTTATATAAGCTTTCC
1 TTAAGCTTATATAAGCTTTCC
*
840449 TTAAGCTTATATAAGTTTTCC
1 TTAAGCTTATATAAGCTTTCC
840470 TTAAGCTTATATAA
1 TTAAGCTTATATAA
840484 CACACAAAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.46
Consensus pattern (21 bp):
TTAAGCTTATATAAGCTTTCC
Found at i:841713 original size:21 final size:21
Alignment explanation
Indices: 841688--841733 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
841678 ACTTTATGCT
841688 CTCTAAACCTCTCATTCTAAG
1 CTCTAAACCTCTCATTCTAAG
*
841709 CTCTAAACCTCTCATTTTAAG
1 CTCTAAACCTCTCATTCTAAG
841730 CTCT
1 CTCT
841734 CTCTAGAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.26, C:0.33, G:0.04, T:0.37
Consensus pattern (21 bp):
CTCTAAACCTCTCATTCTAAG
Found at i:842832 original size:16 final size:17
Alignment explanation
Indices: 842811--842844 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
842801 TGTCACATTG
842811 ACTTTT-CAAAACTTTT
1 ACTTTTACAAAACTTTT
*
842827 ACTTTTACAAAAGTTTT
1 ACTTTTACAAAACTTTT
842844 A
1 A
842845 GGAAATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.35, C:0.15, G:0.03, T:0.47
Consensus pattern (17 bp):
ACTTTTACAAAACTTTT
Found at i:843523 original size:21 final size:21
Alignment explanation
Indices: 843497--843557 Score: 95
Period size: 21 Copynumber: 2.9 Consensus size: 21
843487 GACCATGTAG
*
843497 AGATGTCCTGAAGGACCACAT
1 AGATGTCCCGAAGGACCACAT
843518 AGATGTCCCGAAGGACCACAT
1 AGATGTCCCGAAGGACCACAT
* *
843539 ATATGTCCCGAATGACCAC
1 AGATGTCCCGAAGGACCAC
843558 TCTTTAAGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.33, C:0.28, G:0.21, T:0.18
Consensus pattern (21 bp):
AGATGTCCCGAAGGACCACAT
Found at i:845426 original size:20 final size:20
Alignment explanation
Indices: 845389--845431 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
845379 AATCCACCAC
845389 ATGCAACTAAATGCTTCTAA
1 ATGCAACTAAATGCTTCTAA
* * *
845409 ATGCATCTATATGGTTCTAA
1 ATGCAACTAAATGCTTCTAA
845429 ATG
1 ATG
845432 GGCCTTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (20 bp):
ATGCAACTAAATGCTTCTAA
Found at i:848097 original size:22 final size:22
Alignment explanation
Indices: 848049--848097 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
848039 AAAGGGAGAA
848049 GAAAATGATAGAAAGTAAAAGT
1 GAAAATGATAGAAAGTAAAAGT
* *
848071 -AAAAAGATAGAAAGTTAAAGGT
1 GAAAATGATAGAAAG-TAAAAGT
848093 GAAAA
1 GAAAA
848098 CGTGGGGTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 13 0.57
22 6 0.26
23 4 0.17
ACGTcount: A:0.61, C:0.00, G:0.22, T:0.16
Consensus pattern (22 bp):
GAAAATGATAGAAAGTAAAAGT
Found at i:850674 original size:13 final size:13
Alignment explanation
Indices: 850656--850728 Score: 83
Period size: 13 Copynumber: 5.2 Consensus size: 13
850646 ACCGGTCATA
*
850656 ACCCGACCCGTTT
1 ACCCGACCCGTTG
*
850669 ACCCGACCAGTTG
1 ACCCGACCCGTTG
850682 ACCCGACCCGACCCGTTG
1 A-----CCCGACCCGTTG
850700 ACCCGACCCGTTG
1 ACCCGACCCGTTG
850713 ACCCGACCCGTTG
1 ACCCGACCCGTTG
850726 ACC
1 ACC
850729 ACTGTTGACC
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
13 40 0.77
18 12 0.23
ACGTcount: A:0.18, C:0.47, G:0.21, T:0.15
Consensus pattern (13 bp):
ACCCGACCCGTTG
Found at i:850691 original size:31 final size:31
Alignment explanation
Indices: 850656--850722 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
850646 ACCGGTCATA
*
850656 ACCCGACCCGTTTACCCGACCAGTTGACCCG
1 ACCCGACCCGTTGACCCGACCAGTTGACCCG
*
850687 ACCCGACCCGTTGACCCGACCCGTTGACCCG
1 ACCCGACCCGTTGACCCGACCAGTTGACCCG
850718 ACCCG
1 ACCCG
850723 TTGACCACTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.18, C:0.48, G:0.21, T:0.13
Consensus pattern (31 bp):
ACCCGACCCGTTGACCCGACCAGTTGACCCG
Found at i:850722 original size:18 final size:18
Alignment explanation
Indices: 850669--850709 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
850659 CGACCCGTTT
850669 ACCCGACCAGTTGACCCG
1 ACCCGACCAGTTGACCCG
*
850687 ACCCGACCCGTTGACCCG
1 ACCCGACCAGTTGACCCG
850705 ACCCG
1 ACCCG
850710 TTGACCCGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.20, C:0.49, G:0.22, T:0.10
Consensus pattern (18 bp):
ACCCGACCAGTTGACCCG
Found at i:852057 original size:18 final size:18
Alignment explanation
Indices: 852031--852066 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
852021 TCGAAAGGAC
*
852031 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
852049 TGAATTAAATAATAAGAT
1 TGAAGTAAATAATAAGAT
852067 CGGATGGCAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.31
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:853229 original size:23 final size:24
Alignment explanation
Indices: 853203--853292 Score: 112
Period size: 23 Copynumber: 3.8 Consensus size: 24
853193 TCAAATTTGA
*
853203 ATTCTGTTATGATA-TTGACCTGG
1 ATTCTGATATGATACTTGACCTGG
* *
853226 ATTCTGATCTGATA-TTGACATGG
1 ATTCTGATATGATACTTGACCTGG
* * *
853249 ATTCTGATCTGATACATGACCTGA
1 ATTCTGATATGATACTTGACCTGG
853273 ATTCTGATATGATACTTGAC
1 ATTCTGATATGATACTTGAC
853293 TTGAATTATG
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
23 34 0.59
24 24 0.41
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.39
Consensus pattern (24 bp):
ATTCTGATATGATACTTGACCTGG
Found at i:853417 original size:35 final size:34
Alignment explanation
Indices: 853369--853442 Score: 130
Period size: 35 Copynumber: 2.1 Consensus size: 34
853359 TGGAGGAAGA
853369 TTACTTGAGGCTCCTCGGCTGTGTGCTCAGGGCC
1 TTACTTGAGGCTCCTCGGCTGTGTGCTCAGGGCC
*
853403 TTACTTGCAGGCTCCTCGGCTTTGTGCTCAGGGCC
1 TTACTTG-AGGCTCCTCGGCTGTGTGCTCAGGGCC
853438 TTACT
1 TTACT
853443 GTTCGTGACG
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
34 7 0.18
35 31 0.82
ACGTcount: A:0.09, C:0.30, G:0.28, T:0.32
Consensus pattern (34 bp):
TTACTTGAGGCTCCTCGGCTGTGTGCTCAGGGCC
Found at i:856620 original size:9 final size:9
Alignment explanation
Indices: 856608--856632 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
856598 TAATTCGGTT
856608 AATTAACCG
1 AATTAACCG
856617 AATTAACCG
1 AATTAACCG
856626 AATTAAC
1 AATTAAC
856633 TGAAATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.20, G:0.08, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:856953 original size:176 final size:175
Alignment explanation
Indices: 856643--857009 Score: 635
Period size: 176 Copynumber: 2.1 Consensus size: 175
856633 TGAAATTAAA
* * * *
856643 TTTTAAATGTTAAATATATTATATATAACATATGGGCTCAGCCCAAACCATTTAAAACTCAATTA
1 TTTTAAAT-TAAAAAATATTATATATAACATATGGGCTAAGCCCAAACCATTTAAAACCCAATTA
*
856708 ATAATTTAAGATCTAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAA
65 ATAATTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAA
*
856773 ATTTTTATTTTATAATTATATATTATTTAAATTAATTGTAAACTGTT
130 ATTTTTATTTTATAATTATATATTATTTAAATTAATTATAAACT-TT
*
856820 TTTTTAATTAAAAAATATTATATATAACATATGGGCTAAGCCCAAACCATTTAAAACCCAATTAA
1 TTTTAAATTAAAAAATATTATATATAACATATGGGCTAAGCCCAAACCATTTAAAACCCAATTAA
* *
856885 TAATTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATTTGAAA
66 TAATTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAAA
856950 TTTTTATTTTATAATTATATATTATTTAAATTAATTATAAACTTT
131 TTTTTATTTTATAATTATATATTATTTAAATTAATTATAAACTTT
856995 TTTTAAATTAAAAAA
1 TTTTAAATTAAAAAA
857010 CATTTAATTT
Statistics
Matches: 180, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
175 16 0.09
176 157 0.87
177 7 0.04
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (175 bp):
TTTTAAATTAAAAAATATTATATATAACATATGGGCTAAGCCCAAACCATTTAAAACCCAATTAA
TAATTTAAGATCCAATAACTTTTAAACCTAAATCAATATTAATTAATTAAAAAAATTATATAAAA
TTTTTATTTTATAATTATATATTATTTAAATTAATTATAAACTTT
Found at i:860578 original size:20 final size:20
Alignment explanation
Indices: 860541--860583 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
860531 AATCCACCAC
860541 ATGCAACTAAATGCTTCTAA
1 ATGCAACTAAATGCTTCTAA
* * *
860561 ATGCATCTATATGGTTCTAA
1 ATGCAACTAAATGCTTCTAA
860581 ATG
1 ATG
860584 GGCCTTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (20 bp):
ATGCAACTAAATGCTTCTAA
Found at i:861713 original size:35 final size:34
Alignment explanation
Indices: 861672--861743 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 34
861662 AGAGATAAAA
* *
861672 TTTGTTTCAAGGGAAAC-GATCTCAAATATTTTTGT
1 TTTGTTTCAAAGGAAACAGA-CTCAAAGATTTTT-T
861707 TTTGTTTCAAAGGAAACAGACTCAAAGATTTTTT
1 TTTGTTTCAAAGGAAACAGACTCAAAGATTTTTT
861741 TTT
1 TTT
861744 CTTAAAAGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
34 4 0.12
35 28 0.82
36 2 0.06
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.43
Consensus pattern (34 bp):
TTTGTTTCAAAGGAAACAGACTCAAAGATTTTTT
Found at i:862004 original size:31 final size:32
Alignment explanation
Indices: 861969--862031 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
861959 TTCACATCAT
*
861969 GATGTTGAA-TCCCAAATATGCCCCAACATTC
1 GATGTTGAATTCCCAAAGATGCCCCAACATTC
* *
862000 GATGTTGAATTTCCAAAGATGCCCCATCATTC
1 GATGTTGAATTCCCAAAGATGCCCCAACATTC
862032 ATCGTTTCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 9 0.32
32 19 0.68
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (32 bp):
GATGTTGAATTCCCAAAGATGCCCCAACATTC
Found at i:863584 original size:2 final size:2
Alignment explanation
Indices: 863536--863573 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
863526 GCATACATAC
863536 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
863574 CTGGGTATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:865317 original size:15 final size:13
Alignment explanation
Indices: 865291--865333 Score: 54
Period size: 12 Copynumber: 3.3 Consensus size: 13
865281 TTTAAAAATG
865291 AAAA-GCAGATGC
1 AAAATGCAGATGC
865303 AAAATGCAAAGATGC
1 AAAATGC--AGATGC
865318 -AAATGCAGATGC
1 AAAATGCAGATGC
865330 AAAA
1 AAAA
865334 GTATTGATCC
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 10 0.37
13 5 0.19
14 6 0.22
15 6 0.22
ACGTcount: A:0.53, C:0.14, G:0.21, T:0.12
Consensus pattern (13 bp):
AAAATGCAGATGC
Found at i:867791 original size:30 final size:30
Alignment explanation
Indices: 867730--867815 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
867720 AAATAATATT
*
867730 AACAGAAATTTAAAGGGA-TAAATTAGCAAAA
1 AACAGAAATTT-AAGGGACTAAAATAG-AAAA
* *
867761 ACCA-AAATTTAAGAGACTAAAATAGAAAA
1 AACAGAAATTTAAGGGACTAAAATAGAAAA
* *
867790 AATAGAAACTTAAGGGACTAAAATAG
1 AACAGAAATTTAAGGGACTAAAATAG
867816 CAATAATAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
29 11 0.24
30 32 0.70
31 3 0.07
ACGTcount: A:0.58, C:0.08, G:0.15, T:0.19
Consensus pattern (30 bp):
AACAGAAATTTAAGGGACTAAAATAGAAAA
Found at i:869401 original size:3 final size:3
Alignment explanation
Indices: 869393--869448 Score: 94
Period size: 3 Copynumber: 18.3 Consensus size: 3
869383 TGTAAACATA
869393 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
*
869439 AAT TAT AAT A
1 AAT AAT AAT A
869449 TTTTTGTATA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
3 47 0.94
4 3 0.06
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:872497 original size:15 final size:15
Alignment explanation
Indices: 872477--872509 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
872467 TAGGTTTATG
872477 GAGGGTGCCGCCGAT
1 GAGGGTGCCGCCGAT
*
872492 GAGGGTGCCGCCGTT
1 GAGGGTGCCGCCGAT
872507 GAG
1 GAG
872510 AGTGAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.48, T:0.15
Consensus pattern (15 bp):
GAGGGTGCCGCCGAT
Found at i:872572 original size:21 final size:21
Alignment explanation
Indices: 872523--872572 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
872513 GAATATTAGC
* * *
872523 TTTGAGTTTTGTAAGTTGGGA
1 TTTGAGTTTTATAAATTAGGA
*
872544 -TTAAGTTTTATAAATTAGGA
1 TTTGAGTTTTATAAATTAGGA
872564 TTTGAGTTT
1 TTTGAGTTT
872573 GAGATTAGGA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (21 bp):
TTTGAGTTTTATAAATTAGGA
Found at i:874192 original size:5 final size:5
Alignment explanation
Indices: 874182--874220 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
874172 GAATCAATTA
* * *
874182 TTATG TTATG TTGTG TTATG TTGTG TTATA TTATG TTAT
1 TTATG TTATG TTATG TTATG TTATG TTATG TTATG TTAT
874221 AAAAAATAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.21, T:0.62
Consensus pattern (5 bp):
TTATG
Found at i:887603 original size:139 final size:137
Alignment explanation
Indices: 887460--887825 Score: 409
Period size: 139 Copynumber: 2.6 Consensus size: 137
887450 TGTAGGTTCC
* *
887460 AATATTAATCCTAATCAATTTTAACAAATTA-TGGAATCGAATAATTAAAATGGAACCTCGAGCA
1 AATATTAATCATAACCAATTTTAAC-AATTACTGGAATCGAATAATT-AAATGGAACCTCGAGCA
* * * ** * * * * * *
887524 TAAATGCAAGAACCAAATTAAAAATTCTTCTAATTTTATGGACTGAAGTGAAATTAAGCATAAAA
64 TAAATGCGAGGACCAAATCAAAAATTCACCCAAATTAAGGGACTAAAGTGAAATTAAAC-TAAAA
* * *
887589 TATAGGCTAT
128 TAGAAGATAT
* *
887599 AATATTAATCATAACCAATTTTAACCAATTACT-GAATCGAATAATTGAAATGGAACATCGAGTA
1 AATATTAATCATAACCAATTTTAA-CAATTACTGGAATCGAATAATT-AAATGGAACCTCGAGCA
* *
887663 TAAATGCGAGGACTAAATCAAAAGTTCACCCAAATTAAGGGACTAAAGTGAAATTAAACTAAAAT
64 TAAATGCGAGGACCAAATCAAAAATTCACCCAAATTAAGGGACTAAAGTGAAATTAAACTAAAAT
*
887728 AGAAGATCT
129 AGAAGATAT
*
887737 AATTATTAATCATAACCAATTTTAGACAATTATTGG-ATCGAATAATTAAATGGAA-CTC-AGTC
1 AA-TATTAATCATAACCAATTTTA-ACAATTACTGGAATCGAATAATTAAATGGAACCTCGAG-C
* *
887799 ATAGATGCGAGGACCAAATCCAAAATT
63 ATAAATGCGAGGACCAAATCAAAAATT
887826 TACTTAAATT
Statistics
Matches: 192, Mismatches: 29, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
136 2 0.01
137 25 0.13
138 21 0.11
139 140 0.73
140 4 0.02
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.28
Consensus pattern (137 bp):
AATATTAATCATAACCAATTTTAACAATTACTGGAATCGAATAATTAAATGGAACCTCGAGCATA
AATGCGAGGACCAAATCAAAAATTCACCCAAATTAAGGGACTAAAGTGAAATTAAACTAAAATAG
AAGATAT
Found at i:888125 original size:15 final size:15
Alignment explanation
Indices: 888099--888144 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
888089 TTTCATCTCA
888099 TTCTTCTCTTCTT-T
1 TTCTTCTCTTCTTCT
888113 CTTCTT-TCTTTCTTCT
1 -TTCTTCTC-TTCTTCT
888129 TTCTTCTCTTCTTCT
1 TTCTTCTCTTCTTCT
888144 T
1 T
888145 CTCTCATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
14 2 0.07
15 23 0.82
16 3 0.11
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (15 bp):
TTCTTCTCTTCTTCT
Found at i:888128 original size:18 final size:19
Alignment explanation
Indices: 888088--888146 Score: 77
Period size: 18 Copynumber: 3.1 Consensus size: 19
888078 CTTTTTATCA
*
888088 CTTTCATCTCATTCTTCTCTT
1 CTTTCTTCTC-TTCTT-TCTT
888109 CTTTCTTCT-TTCTTTCTT
1 CTTTCTTCTCTTCTTTCTT
888127 CTTTCTTCTCTTC-TTCTT
1 CTTTCTTCTCTTCTTTCTT
888145 CT
1 CT
888147 CTCATTTTCC
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
18 20 0.56
19 8 0.22
21 8 0.22
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.64
Consensus pattern (19 bp):
CTTTCTTCTCTTCTTTCTT
Found at i:888148 original size:11 final size:11
Alignment explanation
Indices: 888099--888141 Score: 68
Period size: 11 Copynumber: 3.7 Consensus size: 11
888089 TTTCATCTCA
888099 TTCTTCTCTTCT
1 TTCTTCT-TTCT
888111 TTCTTCTTTCT
1 TTCTTCTTTCT
888122 TTCTTCTTTCT
1 TTCTTCTTTCT
888133 TCTCTTCTT
1 T-TCTTCTT
888142 CTTCTCTCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 16 0.53
12 14 0.47
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (11 bp):
TTCTTCTTTCT
Found at i:890027 original size:27 final size:27
Alignment explanation
Indices: 889966--890021 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
889956 ATTAGGGTTA
889966 GAGACCTTTTAGAGATGTACTCATGAC
1 GAGACCTTTTAGAGATGTACTCATGAC
*
889993 GAGACCTTTTAGAGATGT-CTCATGGC
1 GAGACCTTTTAGAGATGTACTCATGAC
890019 GAG
1 GAG
890022 GCCCTTAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 10 0.36
27 18 0.64
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (27 bp):
GAGACCTTTTAGAGATGTACTCATGAC
Found at i:890988 original size:90 final size:90
Alignment explanation
Indices: 890834--891265 Score: 677
Period size: 90 Copynumber: 4.8 Consensus size: 90
890824 TGGGAAATCC
* * * *
890834 GTTCCACTACTCTTCCGTGGAGATCGGACTCGAGATTGATTTTCTTCCACTACTCTTCCATGGAG
1 GTTCCACTACTCTTCCGTGAAGATCAGACTCGAGATTGATTTACTTCCACTACTCTTCCGTGGAG
*
890899 ACTAAATCTGAAATAAGAAGAATAT
66 ACCAAATCTGAAATAAGAAGAATAT
* *
890924 GTTCCACTACTCTTCCGTGAAGATCAGACTCAAGATTGATTTACTTCCACTACTCTTCTGTGGAG
1 GTTCCACTACTCTTCCGTGAAGATCAGACTCGAGATTGATTTACTTCCACTACTCTTCCGTGGAG
890989 ACCAAATCTTGAAATAAGAAGAATAT
66 ACCAAATC-TGAAATAAGAAGAATAT
* * *
891015 GTTCCACTACTTTTCCGTGAAGATCAGACTCAAGATTGATTTGCTTCCACTACTCTTCCGTGGAG
1 GTTCCACTACTCTTCCGTGAAGATCAGACTCGAGATTGATTTACTTCCACTACTCTTCCGTGGAG
891080 ACCAAATCTGAAATAAGAAGAATAT
66 ACCAAATCTGAAATAAGAAGAATAT
*
891105 GTTCCACTACTTTTCCGTGAAGATCAGACTCGAGATTGATTTGA-TTCCACTACTCTTCCGTGGA
1 GTTCCACTACTCTTCCGTGAAGATCAGACTCGAGATTGATTT-ACTTCCACTACTCTTCCGTGGA
*
891169 GACCAAATCTGAAATAAGAAGAATCT
65 GACCAAATCTGAAATAAGAAGAATAT
* * * * *
891195 ATTCCACTACTCTTCCATAAAGATCAGACTCGAGATTGATTTGCTTCCACTACTCTTCCGTGAAG
1 GTTCCACTACTCTTCCGTGAAGATCAGACTCGAGATTGATTTACTTCCACTACTCTTCCGTGGAG
*
891260 ATCAAA
66 ACCAAA
891266 CTCGAGATTG
Statistics
Matches: 319, Mismatches: 20, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
90 232 0.73
91 87 0.27
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (90 bp):
GTTCCACTACTCTTCCGTGAAGATCAGACTCGAGATTGATTTACTTCCACTACTCTTCCGTGGAG
ACCAAATCTGAAATAAGAAGAATAT
Found at i:891143 original size:181 final size:180
Alignment explanation
Indices: 890834--891265 Score: 695
Period size: 181 Copynumber: 2.4 Consensus size: 180
890824 TGGGAAATCC
* * * *
890834 GTTCCACTACTCTTCCGTGGAGATCGGACTCGAGATTGATTTTCTTCCACTACTCTTCCATGGAG
1 GTTCCACTACTCTTCCGTGAAGATCAGACTCGAGATTGATTTGCTTCCACTACTCTTCCGTGGAG
*
890899 ACTAAATCTGAAATAAGAAGAATATGTTCCACTACTCTTCCGTGAAGATCAGACTCAAGATTGAT
66 ACCAAATCTGAAATAAGAAGAATATGTTCCACTACTCTTCCGTGAAGATCAGACTCAAGATTGAT
*
890964 TT-ACTTCCACTACTCTTCTGTGGAGACCAAATCTTGAAATAAGAAGAATAT
131 TTGA-TTCCACTACTCTTCCGTGGAGACCAAATC-TGAAATAAGAAGAATAT
* *
891015 GTTCCACTACTTTTCCGTGAAGATCAGACTCAAGATTGATTTGCTTCCACTACTCTTCCGTGGAG
1 GTTCCACTACTCTTCCGTGAAGATCAGACTCGAGATTGATTTGCTTCCACTACTCTTCCGTGGAG
* *
891080 ACCAAATCTGAAATAAGAAGAATATGTTCCACTACTTTTCCGTGAAGATCAGACTCGAGATTGAT
66 ACCAAATCTGAAATAAGAAGAATATGTTCCACTACTCTTCCGTGAAGATCAGACTCAAGATTGAT
*
891145 TTGATTCCACTACTCTTCCGTGGAGACCAAATCTGAAATAAGAAGAATCT
131 TTGATTCCACTACTCTTCCGTGGAGACCAAATCTGAAATAAGAAGAATAT
* * * *
891195 ATTCCACTACTCTTCCATAAAGATCAGACTCGAGATTGATTTGCTTCCACTACTCTTCCGTGAAG
1 GTTCCACTACTCTTCCGTGAAGATCAGACTCGAGATTGATTTGCTTCCACTACTCTTCCGTGGAG
*
891260 ATCAAA
66 ACCAAA
891266 CTCGAGATTG
Statistics
Matches: 232, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
180 80 0.34
181 151 0.65
182 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (180 bp):
GTTCCACTACTCTTCCGTGAAGATCAGACTCGAGATTGATTTGCTTCCACTACTCTTCCGTGGAG
ACCAAATCTGAAATAAGAAGAATATGTTCCACTACTCTTCCGTGAAGATCAGACTCAAGATTGAT
TTGATTCCACTACTCTTCCGTGGAGACCAAATCTGAAATAAGAAGAATAT
Found at i:891750 original size:22 final size:20
Alignment explanation
Indices: 891725--891771 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 20
891715 CCAATATTTG
891725 ATATTAG-TCTTTTATTATACTT
1 ATATTAGAT-TTTTATT-TA-TT
*
891747 ATATTTGATTTTTATTTATT
1 ATATTAGATTTTTATTTATT
891767 ATATT
1 ATATT
891772 TAATTCGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 7 0.30
21 2 0.09
22 13 0.57
23 1 0.04
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.64
Consensus pattern (20 bp):
ATATTAGATTTTTATTTATT
Found at i:901928 original size:17 final size:18
Alignment explanation
Indices: 901908--901946 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
901898 TAAAAGTAGC
901908 TAAAAATAA-AAATA-AAA
1 TAAAAATAATAAA-AGAAA
901925 TAAAAATAATAAAAGAAA
1 TAAAAATAATAAAAGAAA
901943 TAAA
1 TAAA
901947 GTAGAATAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (18 bp):
TAAAAATAATAAAAGAAA
Found at i:902264 original size:2 final size:2
Alignment explanation
Indices: 902257--902285 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
902247 AATAATGATA
902257 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
902286 ATACAATATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:902382 original size:23 final size:24
Alignment explanation
Indices: 902334--902389 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 24
902324 AAAAAGGACT
*
902334 AAATTAAAATAAAATAGAGGGTAA
1 AAATTAAAAGAAAATAGAGGGTAA
* *
902358 AAATTAAAAGGAAATCG-GGGTAA
1 AAATTAAAAGAAAATAGAGGGTAA
*
902381 AAATCAAAA
1 AAATTAAAA
902390 TTAAGGGTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 14 0.50
24 14 0.50
ACGTcount: A:0.61, C:0.04, G:0.18, T:0.18
Consensus pattern (24 bp):
AAATTAAAAGAAAATAGAGGGTAA
Found at i:904445 original size:22 final size:21
Alignment explanation
Indices: 904418--904458 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
904408 TGGTGACTCT
*
904418 TGATTCTAGAATCTTGAATTTC
1 TGATTCCAG-ATCTTGAATTTC
*
904440 TGATTCCCGATCTTGAATT
1 TGATTCCAGATCTTGAATT
904459 CTCCAAATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.44
Consensus pattern (21 bp):
TGATTCCAGATCTTGAATTTC
Found at i:905075 original size:7 final size:7
Alignment explanation
Indices: 905058--905095 Score: 69
Period size: 7 Copynumber: 5.6 Consensus size: 7
905048 CCTTATTTTC
905058 TTTTC-T
1 TTTTCTT
905064 TTTTCTT
1 TTTTCTT
905071 TTTTCTT
1 TTTTCTT
905078 TTTTCTT
1 TTTTCTT
905085 TTTTCTT
1 TTTTCTT
905092 TTTT
1 TTTT
905096 TAATTTAGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 5 0.16
7 26 0.84
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTCTT
Found at i:913246 original size:19 final size:19
Alignment explanation
Indices: 913222--913260 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
913212 TAAGAAATCA
913222 TTCCATAGTCTTGGTGTCC
1 TTCCATAGTCTTGGTGTCC
913241 TTCCATAGTCTTGGTGTCC
1 TTCCATAGTCTTGGTGTCC
913260 T
1 T
913261 CATGATCTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.10, C:0.26, G:0.21, T:0.44
Consensus pattern (19 bp):
TTCCATAGTCTTGGTGTCC
Found at i:915532 original size:36 final size:36
Alignment explanation
Indices: 915492--915566 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
915482 TTGCATAATT
915492 AAACATAGACTATTACTACAATAAAGAAAAGAAGTA
1 AAACATAGACTATTACTACAATAAAGAAAAGAAGTA
915528 AAACATAGACTATTACTACAATAAAGAAAAGAAGTA
1 AAACATAGACTATTACTACAATAAAGAAAAGAAGTA
915564 AAA
1 AAA
915567 TAAAAACCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.60, C:0.11, G:0.11, T:0.19
Consensus pattern (36 bp):
AAACATAGACTATTACTACAATAAAGAAAAGAAGTA
Found at i:915612 original size:21 final size:23
Alignment explanation
Indices: 915586--915659 Score: 71
Period size: 23 Copynumber: 3.1 Consensus size: 23
915576 AAAAGTAGCT
915586 AAATAAT-AAA-AAATAAAATAA
1 AAATAATAAAAGAAATAAAATAA
*
915607 AAATAATAAAAGAAATAAAGTAA
1 AAATAATAAAAGAAATAAAATAA
* *
915630 AATAGAATAAGATGAAAATGAAAATAA
1 AA-ATAATAA-AAG-AAAT-AAAATAA
915657 AAA
1 AAA
915660 AATGGAATCA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
21 7 0.16
22 3 0.07
23 12 0.28
24 6 0.14
25 2 0.05
26 5 0.12
27 8 0.19
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (23 bp):
AAATAATAAAAGAAATAAAATAA
Found at i:915702 original size:26 final size:25
Alignment explanation
Indices: 915655--915709 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
915645 AAATGAAAAT
* * * *
915655 AAAAAAATGGAATCAAATAAAACTA
1 AAAAAAATAGAAACAAAGAAAACGA
915680 AAAAAAATAGAAACAAAAGAAAACGA
1 AAAAAAATAGAAAC-AAAGAAAACGA
915706 AAAA
1 AAAA
915710 TAGAAAATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.75, C:0.07, G:0.09, T:0.09
Consensus pattern (25 bp):
AAAAAAATAGAAACAAAGAAAACGA
Found at i:915721 original size:5 final size:5
Alignment explanation
Indices: 915586--915702 Score: 57
Period size: 5 Copynumber: 23.6 Consensus size: 5
915576 AAAAGTAGCT
* * *
915586 AAATA ATAA-A AAATA AAATA AAA-A TAATA AAA-G AAATA AAGTA AAATA
1 AAATA A-AATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA
* * * * *
915634 GAATA AGATGA AAATGA AAAT- AAA-A AAATG GAATC AAATA AAACTA
1 AAATA AAAT-A AAAT-A AAATA AAATA AAATA AAATA AAATA AAA-TA
* *
915680 AAA-A AAATA GAAACA AAAGA AAA
1 AAATA AAATA -AAATA AAATA AAA
915703 CGAAAAATAG
Statistics
Matches: 85, Mismatches: 17, Indels: 20
0.70 0.14 0.16
Matches are distributed among these distances:
4 18 0.21
5 46 0.54
6 21 0.25
ACGTcount: A:0.74, C:0.03, G:0.09, T:0.15
Consensus pattern (5 bp):
AAATA
Found at i:915743 original size:17 final size:20
Alignment explanation
Indices: 915713--915749 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
915703 CGAAAAATAG
915713 AAAATAAAATTATAA-AGAA
1 AAAATAAAATTATAATAGAA
915732 AAAAT-AAA-TATAATAGAA
1 AAAATAAAATTATAATAGAA
915750 TGTAGTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.29
18 7 0.41
19 5 0.29
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (20 bp):
AAAATAAAATTATAATAGAA
Found at i:916050 original size:23 final size:24
Alignment explanation
Indices: 915994--916050 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 24
915984 TAACTAAATT
* *
915994 AAAATAAAAATAAAATAGAGGGTA
1 AAAATAAAAAGAAAATACAGGGTA
* *
916018 AAATTTAAAAGAAAAT-CAGGGTA
1 AAAATAAAAAGAAAATACAGGGTA
*
916041 AAAATCAAAA
1 AAAATAAAAA
916051 TTAAGGGTCA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
23 14 0.52
24 13 0.48
ACGTcount: A:0.65, C:0.04, G:0.14, T:0.18
Consensus pattern (24 bp):
AAAATAAAAAGAAAATACAGGGTA
Found at i:917773 original size:17 final size:17
Alignment explanation
Indices: 917751--917792 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
917741 CTCAAATCCT
917751 CTCAAACCCTCTTAAAG
1 CTCAAACCCTCTTAAAG
917768 CTCAAACCCTCTTAAAG
1 CTCAAACCCTCTTAAAG
917785 CTCAAACC
1 CTCAAACC
917793 TGGTCAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.36, C:0.38, G:0.05, T:0.21
Consensus pattern (17 bp):
CTCAAACCCTCTTAAAG
Found at i:918022 original size:27 final size:28
Alignment explanation
Indices: 917973--918031 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
917963 ATACGGTAAC
*
917973 ATTTTTATATTCTATTTTAATTTTAATT
1 ATTTTTATATTCTATTTTAATTTAAATT
*
918001 ATTTTTAATATTTTA-TTT-ATTTAAATT
1 ATTTTT-ATATTCTATTTTAATTTAAATT
918028 -TTTT
1 ATTTT
918032 AGTATTAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 4 0.14
27 8 0.29
28 9 0.32
29 7 0.25
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (28 bp):
ATTTTTATATTCTATTTTAATTTAAATT
Found at i:918030 original size:16 final size:16
Alignment explanation
Indices: 917975--918030 Score: 51
Period size: 16 Copynumber: 3.3 Consensus size: 16
917965 ACGGTAACAT
917975 TTTTATATTCTATTTTAA
1 TTTT-TATT-TATTTTAA
*
917993 -TTTTAATTATTTTTAA
1 TTTTTATTTA-TTTTAA
*
918009 TATTTTATTTATTTAAA
1 T-TTTTATTTATTTTAA
918026 TTTTT
1 TTTTT
918031 TAGTATTAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 2 0.06
16 13 0.41
17 9 0.28
18 8 0.25
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTTATTTATTTTAA
Found at i:920132 original size:13 final size:13
Alignment explanation
Indices: 920114--920138 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
920104 ATTTCATTAT
920114 TTTTTTTATTTAA
1 TTTTTTTATTTAA
920127 TTTTTTTATTTA
1 TTTTTTTATTTA
920139 CCAACAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTTTATTTAA
Found at i:924315 original size:13 final size:13
Alignment explanation
Indices: 924297--924321 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
924287 ATAGATGGAT
924297 TACTTTTCATGTC
1 TACTTTTCATGTC
924310 TACTTTTCATGT
1 TACTTTTCATGT
924322 GAAGAGGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.20, G:0.08, T:0.56
Consensus pattern (13 bp):
TACTTTTCATGTC
Found at i:935584 original size:23 final size:22
Alignment explanation
Indices: 935542--935600 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 22
935532 TTAGTGCAGA
* *
935542 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATTCCCCCTTGAAG
*
935564 GGGAACCGATTCCCCCTTTGAAT
1 GGGAACCGATTCCCCC-TTGAAG
935587 GGGAACCGATTCCC
1 GGGAACCGATTCCC
935601 TCATTGAGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 14 0.42
23 19 0.58
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (22 bp):
GGGAACCGATTCCCCCTTGAAG
Found at i:935611 original size:21 final size:23
Alignment explanation
Indices: 935542--935623 Score: 80
Period size: 23 Copynumber: 3.7 Consensus size: 23
935532 TTAGTGCAGA
* * *
935542 GGGAATCGATACCCCC-TTGAAG
1 GGGAACCGATTCCCCCATTGAAT
*
935564 GGGAACCGATTCCCCCTTTGAAT
1 GGGAACCGATTCCCCCATTGAAT
*
935587 GGGAACCGATTCCCTCATTG-A-
1 GGGAACCGATTCCCCCATTGAAT
* *
935608 GGGAATCGATACCCCC
1 GGGAACCGATTCCCCC
935624 CACAGGTTCT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
21 13 0.25
22 15 0.29
23 23 0.45
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.21
Consensus pattern (23 bp):
GGGAACCGATTCCCCCATTGAAT
Found at i:940376 original size:67 final size:71
Alignment explanation
Indices: 940232--940394 Score: 194
Period size: 67 Copynumber: 2.4 Consensus size: 71
940222 TACTTAATAT
* * *
940232 TATGGTTTCAGTCTTAAGATTTGACACTTTAATATTATGGTTTGATTATGGATTTTATTATTTAG
1 TATGGTTTGAGTCTTGAGATTTGACACTTTAATATTATGATTTGATTATGGATTTTATTATTTAG
940297 AATTAA
66 AATTAA
* * * *
940303 TGTGGTTTGAATCTTGAGA-TTGACA-TTTAATATTGTGATTTG-TTAT-GA-TTTATTGTTCTA
1 TATGGTTTGAGTCTTGAGATTTGACACTTTAATATTATGATTTGATTATGGATTTTATTATT-TA
940363 -AACTTAA
65 GAA-TTAA
*
940370 TATGGTTTGAGTCTTGATATTTGAC
1 TATGGTTTGAGTCTTGAGATTTGAC
940395 TTTATTAAAT
Statistics
Matches: 79, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
66 10 0.13
67 24 0.30
68 9 0.11
69 15 0.19
70 6 0.08
71 15 0.19
ACGTcount: A:0.27, C:0.06, G:0.18, T:0.49
Consensus pattern (71 bp):
TATGGTTTGAGTCTTGAGATTTGACACTTTAATATTATGATTTGATTATGGATTTTATTATTTAG
AATTAA
Found at i:941492 original size:155 final size:155
Alignment explanation
Indices: 941210--941519 Score: 604
Period size: 155 Copynumber: 2.0 Consensus size: 155
941200 AAGATTTCCA
941210 GTTTAAATATATTCCATGTGAAAAATCAGAGGCATTTTTAATAATGAAACAAAGAATGTAAATGA
1 GTTTAAATATATTCCATGTGAAAAATCAGAGGCATTTTTAATAATGAAACAAAGAATGTAAATGA
941275 ACACGGTTCCATGTTTCTCATATTAAGCATTTTTCATAGTTTGAAATGTAGACAAGATGATCGGA
66 ACACGGTTCCATGTTTCTCATATTAAGCATTTTTCATAGTTTGAAATGTAGACAAGATGATCGGA
941340 GATATTACAGCAGGCCAGGTCTCTG
131 GATATTACAGCAGGCCAGGTCTCTG
941365 GTTTAAATATATTCCATGTGAAAAATCAGAGGCATTTTTAATAATGAAAACAAAGAATGTAAATG
1 GTTTAAATATATTCCATGTGAAAAATCAGAGGCATTTTTAATAATG-AAACAAAGAATGTAAATG
941430 AACACGGTTCCATGTTTCTCATATTAAGCA-TTTTCATAGTTTGAAATGTAGACAAGATGATCGG
65 AACACGGTTCCATGTTTCTCATATTAAGCATTTTTCATAGTTTGAAATGTAGACAAGATGATCGG
941494 AGATATTACAGCAGGCCAGGTCTCTG
130 AGATATTACAGCAGGCCAGGTCTCTG
941520 TAATATATTC
Statistics
Matches: 154, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
155 106 0.69
156 48 0.31
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (155 bp):
GTTTAAATATATTCCATGTGAAAAATCAGAGGCATTTTTAATAATGAAACAAAGAATGTAAATGA
ACACGGTTCCATGTTTCTCATATTAAGCATTTTTCATAGTTTGAAATGTAGACAAGATGATCGGA
GATATTACAGCAGGCCAGGTCTCTG
Found at i:947426 original size:20 final size:21
Alignment explanation
Indices: 947386--947427 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
947376 GATATATTTG
*
947386 TTTAAATTTAAATACTAATTA
1 TTTAAATATAAATACTAATTA
947407 TTTAAATATAAATA-TAATTA
1 TTTAAATATAAATACTAATTA
947427 T
1 T
947428 AATATTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
TTTAAATATAAATACTAATTA
Found at i:949110 original size:45 final size:43
Alignment explanation
Indices: 949059--949176 Score: 123
Period size: 43 Copynumber: 2.7 Consensus size: 43
949049 TTTTATAAAT
* * * *
949059 GCCGCAAAAGGTTAAGATATTTAGTGACGTTTTTTGGATACAAAC
1 GCCGCAAAAGG-TAAGATATATAGCGAC-ATTTTCGGATACAAAC
* * * *
949104 GCCGCAACAGGTATGGTATATAGCGTCATTTTCGGATACAAAC
1 GCCGCAAAAGGTAAGATATATAGCGACATTTTCGGATACAAAC
949147 GCCGCAAAA-GTATAG-TATATAGCGACATTT
1 GCCGCAAAAGGTA-AGATATATAGCGACATTT
949177 ATGTTACAAA
Statistics
Matches: 61, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
42 17 0.28
43 23 0.38
44 11 0.18
45 10 0.16
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (43 bp):
GCCGCAAAAGGTAAGATATATAGCGACATTTTCGGATACAAAC
Found at i:949143 original size:43 final size:42
Alignment explanation
Indices: 949089--949176 Score: 131
Period size: 43 Copynumber: 2.1 Consensus size: 42
949079 TTAGTGACGT
* * * *
949089 TTTTTGGATACAAACGCCGCAACAGGTATGGTATATAGCGTCA
1 TTTTCGGATACAAACGCCGCAA-AAGTATAGTATATAGCGACA
949132 TTTTCGGATACAAACGCCGCAAAAGTATAGTATATAGCGACA
1 TTTTCGGATACAAACGCCGCAAAAGTATAGTATATAGCGACA
949174 TTT
1 TTT
949177 ATGTTACAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 20 0.49
43 21 0.51
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (42 bp):
TTTTCGGATACAAACGCCGCAAAAGTATAGTATATAGCGACA
Found at i:949196 original size:41 final size:41
Alignment explanation
Indices: 949090--949196 Score: 126
Period size: 42 Copynumber: 2.6 Consensus size: 41
949080 TAGTGACGTT
* * * *
949090 TTTTGGATACAAACGCCGCAACAGGTATGGTATATAGCGTCA
1 TTTTCGATACAAACGCCGCAA-AAGTATAGTATATAGCGACA
949132 TTTTCGGATACAAACGCCGCAAAAGTATAGTATATAGCGACA
1 TTTTC-GATACAAACGCCGCAAAAGTATAGTATATAGCGACA
* *
949174 TTTAT-GTTACAAATGCCGCAAAA
1 TTT-TCGATACAAACGCCGCAAAA
949197 TATCTTTATT
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 16 0.28
42 24 0.42
43 17 0.30
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (41 bp):
TTTTCGATACAAACGCCGCAAAAGTATAGTATATAGCGACA
Found at i:955037 original size:16 final size:16
Alignment explanation
Indices: 955018--955051 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
955008 TAATCACTCC
955018 TAAATT-ATAAAACTTT
1 TAAATTGATAAAA-TTT
955034 TAAATTGATAAAATTT
1 TAAATTGATAAAATTT
955050 TA
1 TA
955052 TGGGAGCAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (16 bp):
TAAATTGATAAAATTT
Done.