Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008282.1 Hibiscus syriacus cultivar Beakdansim tig00110944_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1335609
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 8 of 8
Found at i:1226896 original size:19 final size:19
Alignment explanation
Indices: 1226872--1226910 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
1226862 TGATTCCTCT
1226872 ACCAGACCTTAACTAGTTA
1 ACCAGACCTTAACTAGTTA
1226891 ACCAGACCTTAACTAGTTA
1 ACCAGACCTTAACTAGTTA
1226910 A
1 A
1226911 ACATACATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.26, G:0.10, T:0.26
Consensus pattern (19 bp):
ACCAGACCTTAACTAGTTA
Found at i:1228539 original size:60 final size:60
Alignment explanation
Indices: 1228367--1228546 Score: 184
Period size: 60 Copynumber: 3.0 Consensus size: 60
1228357 AAATACCAGA
* * ** *
1228367 ACAAGAATCCATAAGGACTTACCCTAGACTTCT-AGCATCTAAGAGCCTAATATGGAAGAT
1 ACAAGCATCCATAAAGACTTACCCTAGACCACTAAG-ATCTAGGAGCCTAATATGGAAGAT
* * * * * * *
1228427 ACAAGCATCCATAAAGACCTACCATAAACCCCTAGGATATAGAAGTCC-AATATGGAAGAT
1 ACAAGCATCCATAAAGACTTACCCTAGACCACTAAGATCTAGGAG-CCTAATATGGAAGAT
* * * *
1228487 ACATGTATCCATAAAGACTTACCCTAGACCACTAAGATCTAGGAGGCTAATATGAAAGAT
1 ACAAGCATCCATAAAGACTTACCCTAGACCACTAAGATCTAGGAGCCTAATATGGAAGAT
1228547 CATAACAGGT
Statistics
Matches: 95, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
59 1 0.01
60 91 0.96
61 3 0.03
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.22
Consensus pattern (60 bp):
ACAAGCATCCATAAAGACTTACCCTAGACCACTAAGATCTAGGAGCCTAATATGGAAGAT
Found at i:1229474 original size:27 final size:26
Alignment explanation
Indices: 1229444--1229505 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
1229434 GGGTATTTGT
*
1229444 GTCATTTCAGTACTCGGGGTTATTTTA
1 GTCATTT-AGTACTCGAGGTTATTTTA
* * *
1229471 GTCACTTTGGTACTCGATGTTATTTTG
1 GTCA-TTTAGTACTCGAGGTTATTTTA
1229498 GTCATTTA
1 GTCATTTA
1229506 TTTTAATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 3 0.10
27 23 0.79
28 3 0.10
ACGTcount: A:0.18, C:0.15, G:0.21, T:0.47
Consensus pattern (26 bp):
GTCATTTAGTACTCGAGGTTATTTTA
Found at i:1233069 original size:34 final size:34
Alignment explanation
Indices: 1233022--1233086 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
1233012 AAAAGAGTTC
1233022 TATCTTTTGAATATTTCAA-ATTAAAAGATATTAT
1 TATCTTTTGAATA-TTCAATATTAAAAGATATTAT
*
1233056 TATCTGTTT-AATATTGAATATTAAAAGATAT
1 TATCT-TTTGAATATTCAATATTAAAAGATAT
1233087 CTGGTTGGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 4 0.14
34 21 0.75
35 3 0.11
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.46
Consensus pattern (34 bp):
TATCTTTTGAATATTCAATATTAAAAGATATTAT
Found at i:1238183 original size:23 final size:22
Alignment explanation
Indices: 1238143--1238188 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
1238133 TATTACAAGT
1238143 TAAAAGCAGAACACAAAATGTTA
1 TAAAAGCAGAACACAAAA-GTTA
*
1238166 TAAAA-CAGAACTAGAAAAGTTA
1 TAAAAGCAGAAC-ACAAAAGTTA
1238188 T
1 T
1238189 CAATATAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.57, C:0.11, G:0.13, T:0.20
Consensus pattern (22 bp):
TAAAAGCAGAACACAAAAGTTA
Found at i:1238524 original size:77 final size:76
Alignment explanation
Indices: 1238405--1238890 Score: 555
Period size: 77 Copynumber: 6.3 Consensus size: 76
1238395 TGCGCCTAAA
* *
1238405 AATGTCATGGTTCACTAAAAAAATAGTTTGCGATATGGAATGTTAATATTTTTATTAATAAAATG
1 AATGTCATGGTTCACT-AATAAATAG-TTGCGATATGAAATGTTAATATTTTTATTAATAAAATG
* **
1238470 GGTTGGGCCCAAG
64 AGTTGCACCCAAG
* * * * *
1238483 AATGTCCTGGTTCACTCAGAAATAGTTTGCGGTATGAAATGTTAATATTTTTATTAATAAAATGG
1 AATGTCATGGTTCACTAATAAATAG-TTGCGATATGAAATGTTAATATTTTTATTAATAAAATGA
*
1238548 GTTGCGCCCAAG
65 GTTGCACCCAAG
* * * *
1238560 AATGTCATGGTTCACTAAGAAATAAGTTGCTATCTGGAATGTTAATATTTTTATTAATTAAAATG
1 AATGTCATGGTTCACTAATAAAT-AGTTGCGATATGAAATGTTAATATTTTTATTAA-TAAAATG
* *
1238625 AGTTACACCCAAT
64 AGTTGCACCCAAG
* * *
1238638 AATGTCATGGTTCACTAATAAATAGATTACAATCT-AGAATGTTAATATTTTTATTAATAAAATG
1 AATGTCATGGTTCACTAATAAATAG-TTGCGATATGA-AATGTTAATATTTTTATTAATAAAATG
*
1238702 AGTTAG-ATCCAAG
64 AGTT-GCACCCAAG
* *
1238715 AATGTCATGGTTCACTAATAAATAAGTTGCGATCT-AGAGTGTTAATATTTTTATTAATAAAATG
1 AATGTCATGGTTCACTAATAAAT-AGTTGCGATATGA-AATGTTAATATTTTTATTAATAAAATG
* ** *
1238779 AGTTCCGTCCAAC
64 AGTTGCACCCAAG
* * *
1238792 AATGTCATGGTTCAATAATAAATAGGTTGCGATATGGAATGTTAATATTTTTATTAATAAAATGG
1 AATGTCATGGTTCACTAATAAATA-GTTGCGATATGAAATGTTAATATTTTTATTAATAAAATGA
* * *
1238857 GTTGTATCCATG
65 GTTGCACCCAAG
1238869 AATGTCATGGTTCACTAATAAA
1 AATGTCATGGTTCACTAATAAA
1238891 ATGGGTTGCG
Statistics
Matches: 359, Mismatches: 40, Indels: 19
0.86 0.10 0.05
Matches are distributed among these distances:
76 1 0.00
77 274 0.76
78 84 0.23
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.36
Consensus pattern (76 bp):
AATGTCATGGTTCACTAATAAATAGTTGCGATATGAAATGTTAATATTTTTATTAATAAAATGAG
TTGCACCCAAG
Found at i:1238649 original size:155 final size:153
Alignment explanation
Indices: 1238405--1238905 Score: 619
Period size: 155 Copynumber: 3.2 Consensus size: 153
1238395 TGCGCCTAAA
* *
1238405 AATGTCATGGTTCACTAAAAAAATAGTTTGCGATATGGAATGTTAATATTTTTATTAATAAAATG
1 AATGTCATGGTTCACTAAAAATA-AG-TTGCGATCTGGAATGTTAATATTTTTATTAATAAAATG
* ** * * * * * *
1238470 GGTTGGGCCCAAGAATGTCCTGGTTCACTCAGAAATAGTTTGCGGTATGAAATGTTAATATTTTT
64 AGTTACGCCCAACAATGTCATGGTTCACTAATAAATAGATTGCGATATGAAATGTTAATATTTTT
*
1238535 ATTAATAAAATGGGTTGCGCCCAAG
129 ATTAATAAAATGGGTTGCACCCAAG
*
1238560 AATGTCATGGTTCACTAAGAAATAAGTTGCTATCTGGAATGTTAATATTTTTATTAATTAAAATG
1 AATGTCATGGTTCACTAA-AAATAAGTTGCGATCTGGAATGTTAATATTTTTATTAA-TAAAATG
* * * * *
1238625 AGTTACACCCAATAATGTCATGGTTCACTAATAAATAGATTACAATCT-AGAATGTTAATATTTT
64 AGTTACGCCCAACAATGTCATGGTTCACTAATAAATAGATTGCGATATGA-AATGTTAATATTTT
* *
1238689 TATTAATAAAATGAGTTAG-ATCCAAG
128 TATTAATAAAATGGGTT-GCACCCAAG
* *
1238715 AATGTCATGGTTCACTAATAAATAAGTTGCGATCTAGAGTGTTAATATTTTTATTAATAAAATGA
1 AATGTCATGGTTCACTAA-AAATAAGTTGCGATCTGGAATGTTAATATTTTTATTAATAAAATGA
* * * * *
1238780 GTTCCGTCCAACAATGTCATGGTTCAATAATAAATAGGTTGCGATATGGAATGTTAATATTTTTA
65 GTTACGCCCAACAATGTCATGGTTCACTAATAAATAGATTGCGATATGAAATGTTAATATTTTTA
* * *
1238845 TTAATAAAATGGGTTGTATCCATG
130 TTAATAAAATGGGTTGCACCCAAG
**
1238869 AATGTCATGGTTCACTAATAAAATGGGTTGCGATCTG
1 AATGTCATGGTTCACT-A-AAAATAAGTTGCGATCTG
1238906 AATATGTCAG
Statistics
Matches: 300, Mismatches: 38, Indels: 16
0.85 0.11 0.05
Matches are distributed among these distances:
153 1 0.00
154 128 0.43
155 165 0.55
156 6 0.02
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (153 bp):
AATGTCATGGTTCACTAAAAATAAGTTGCGATCTGGAATGTTAATATTTTTATTAATAAAATGAG
TTACGCCCAACAATGTCATGGTTCACTAATAAATAGATTGCGATATGAAATGTTAATATTTTTAT
TAATAAAATGGGTTGCACCCAAG
Found at i:1238760 original size:232 final size:231
Alignment explanation
Indices: 1238405--1238890 Score: 645
Period size: 232 Copynumber: 2.1 Consensus size: 231
1238395 TGCGCCTAAA
* * * * *
1238405 AATGTCATGGTTCACTAAAAAAATAGTTTGCGATATGGAATGTTAATATTTTTATTAATAAAATG
1 AATGTCATGGTTCACT-AATAAATAGATTACAATATAGAATGTTAATATTTTTATTAATAAAATG
* * * * * *
1238470 GGTTGGGCCCAAGAATGTCCTGGTTCACTCAGAAATAGTTTGCGGTATGAAATGTTAATATTTTT
65 AGTTAGACCCAAGAATGTCATGGTTCACTAAGAAATAGTTTGCGATATGAAATGTTAATATTTTT
* * * * * *
1238535 ATTAATAAAATGGGTTGCGCCCAAGAATGTCATGGTTCACTAAGAAATAAGTTGCTATCTGGAAT
130 ATTAATAAAATGAGTTCCGCCCAACAATGTCATGGTTCAATAAGAAATAAGTTGCGATATGGAAT
1238600 GTTAATATTTTTATTAATTAAAATGAGTTACACCCAAT-
195 GTTAATATTTTTATTAA-TAAAATGAGTTACACCC-ATG
*
1238638 AATGTCATGGTTCACTAATAAATAGATTACAATCTAGAATGTTAATATTTTTATTAATAAAATGA
1 AATGTCATGGTTCACTAATAAATAGATTACAATATAGAATGTTAATATTTTTATTAATAAAATGA
* * * *
1238703 GTTAGATCCAAGAATGTCATGGTTCACTAATAAATAAG-TTGCGATCT-AGAGTGTTAATATTTT
66 GTTAGACCCAAGAATGTCATGGTTCACTAAGAAAT-AGTTTGCGATATGA-AATGTTAATATTTT
* * *
1238766 TATTAATAAAATGAGTTCCGTCCAACAATGTCATGGTTCAATAATAAATAGGTTGCGATATGGAA
129 TATTAATAAAATGAGTTCCGCCCAACAATGTCATGGTTCAATAAGAAATAAGTTGCGATATGGAA
* ** *
1238831 TGTTAATATTTTTATTAATAAAATGGGTTGTATCCATG
194 TGTTAATATTTTTATTAATAAAATGAGTTACACCCATG
1238869 AATGTCATGGTTCACTAATAAA
1 AATGTCATGGTTCACTAATAAA
1238891 ATGGGTTGCG
Statistics
Matches: 221, Mismatches: 29, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
230 2 0.01
231 36 0.16
232 165 0.75
233 18 0.08
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.36
Consensus pattern (231 bp):
AATGTCATGGTTCACTAATAAATAGATTACAATATAGAATGTTAATATTTTTATTAATAAAATGA
GTTAGACCCAAGAATGTCATGGTTCACTAAGAAATAGTTTGCGATATGAAATGTTAATATTTTTA
TTAATAAAATGAGTTCCGCCCAACAATGTCATGGTTCAATAAGAAATAAGTTGCGATATGGAATG
TTAATATTTTTATTAATAAAATGAGTTACACCCATG
Found at i:1245401 original size:19 final size:18
Alignment explanation
Indices: 1245378--1245433 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 18
1245368 TTTAGGGAAT
1245378 TTATGAGAATTTAAGAGA
1 TTATGAGAATTTAAGAGA
* *
1245396 TCTATGA-AACTTACAGAGG
1 T-TATGAGAATTTA-AGAGA
*
1245415 TTAATGTGAATTTAAGAGA
1 TT-ATGAGAATTTAAGAGA
1245434 AATAACTTGG
Statistics
Matches: 29, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
18 7 0.24
19 17 0.59
20 5 0.17
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.32
Consensus pattern (18 bp):
TTATGAGAATTTAAGAGA
Found at i:1253511 original size:21 final size:22
Alignment explanation
Indices: 1253475--1253545 Score: 99
Period size: 23 Copynumber: 3.2 Consensus size: 22
1253465 TTAGTGCAGA
* *
1253475 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATTCCCCCTTGAAG
1253497 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCC-TTGAAG
*
1253520 GGGAACCGATTCCCCC-TGTAG
1 GGGAACCGATTCCCCCTTGAAG
1253541 GGGAA
1 GGGAA
1253546 TCAATACCCC
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
21 9 0.20
22 14 0.31
23 22 0.49
ACGTcount: A:0.24, C:0.28, G:0.30, T:0.18
Consensus pattern (22 bp):
GGGAACCGATTCCCCCTTGAAG
Found at i:1253558 original size:21 final size:22
Alignment explanation
Indices: 1253475--1253557 Score: 96
Period size: 23 Copynumber: 3.8 Consensus size: 22
1253465 TTAGTGCAGA
*
1253475 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATACCCCCTTGAAG
*
1253497 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATACCCCC-TTGAAG
* *
1253520 GGGAACCGATTCCCCC-TGTAG
1 GGGAACCGATACCCCCTTGAAG
* *
1253541 GGGAATCAATACCCCCT
1 GGGAACCGATACCCCCT
1253558 GGAGGTTCTG
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
21 17 0.32
22 14 0.26
23 22 0.42
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.19
Consensus pattern (22 bp):
GGGAACCGATACCCCCTTGAAG
Found at i:1255141 original size:18 final size:19
Alignment explanation
Indices: 1255115--1255162 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
1255105 GACGACTCTG
* *
1255115 ACGATGAACCAGAAC-AGC
1 ACGAGGAACAAGAACGAGC
*
1255133 ACGAGGAACAAGCACGAGC
1 ACGAGGAACAAGAACGAGC
1255152 A-GAGGAACAAG
1 ACGAGGAACAAG
1255163 CACAGCCAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 22 0.85
19 4 0.15
ACGTcount: A:0.46, C:0.23, G:0.29, T:0.02
Consensus pattern (19 bp):
ACGAGGAACAAGAACGAGC
Found at i:1255163 original size:18 final size:17
Alignment explanation
Indices: 1255128--1255175 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 17
1255118 ATGAACCAGA
1255128 ACAGCACGAGGAACAAGC
1 ACAGCA-GAGGAACAAGC
1255146 ACGAGCAGAGGAACAAGC
1 AC-AGCAGAGGAACAAGC
1255164 ACAGCCAGAGGA
1 ACAG-CAGAGGA
1255176 TCAAATTCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 2 0.07
18 22 0.79
19 4 0.14
ACGTcount: A:0.44, C:0.25, G:0.31, T:0.00
Consensus pattern (17 bp):
ACAGCAGAGGAACAAGC
Found at i:1255700 original size:2 final size:2
Alignment explanation
Indices: 1255693--1255752 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
1255683 GCAGCTTAAG
1255693 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1255735 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
1255753 CAATTGGCTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1266566 original size:14 final size:15
Alignment explanation
Indices: 1266543--1266575 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
1266533 AAAATATTAT
*
1266543 TAATATTTAAAT-AA
1 TAATAATTAAATAAA
1266557 TAATAATTAAATAAA
1 TAATAATTAAATAAA
1266572 TAAT
1 TAAT
1266576 TTAAGTCCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TAATAATTAAATAAA
Found at i:1274005 original size:23 final size:23
Alignment explanation
Indices: 1273975--1274023 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
1273965 TGGCGGTTGG
*
1273975 TTTAATGG-ATGTTTAAACTTTAT
1 TTTAATGGTATATTT-AACTTTAT
*
1273998 TTTAATGGTATATTTAAGTTTAT
1 TTTAATGGTATATTTAACTTTAT
1274021 TTT
1 TTT
1274024 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.57
Consensus pattern (23 bp):
TTTAATGGTATATTTAACTTTAT
Found at i:1299235 original size:64 final size:64
Alignment explanation
Indices: 1299104--1299237 Score: 148
Period size: 64 Copynumber: 2.1 Consensus size: 64
1299094 ATAAGACCTA
* * * * *
1299104 GTGCATTGGTACACTAATTACATTCGATGTTTCAAAAGTGCAGGAGTGTATCAATGCATGGTCT
1 GTGCATTGGTACACTAAATACATTCGATGTTTCAAAAATGCAGGAATGCATCAATGCATGGTAT
* **
1299168 GTGCATTGGTACA-TAAAATGCATTCGATGTTTCAATAAAAT-CAGGAATGCATCGTTGCATGG-
1 GTGCATTGGTACACT-AAATACATTCGATGTTTC-A-AAAATGCAGGAATGCATCAATGCATGGT
1299230 AT
63 AT
1299232 GTGCAT
1 GTGCAT
1299238 CGATGCATGG
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
63 1 0.02
64 36 0.61
65 18 0.31
66 4 0.07
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (64 bp):
GTGCATTGGTACACTAAATACATTCGATGTTTCAAAAATGCAGGAATGCATCAATGCATGGTAT
Found at i:1299238 original size:18 final size:18
Alignment explanation
Indices: 1299215--1299257 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
1299205 AAATCAGGAA
*
1299215 TGCATCGTTGCATGGATG
1 TGCATCGATGCATGGATG
1299233 TGCATCGATGCATGGATG
1 TGCATCGATGCATGGATG
1299251 TGCATCG
1 TGCATCG
1299258 GTACACAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.19, C:0.19, G:0.33, T:0.30
Consensus pattern (18 bp):
TGCATCGATGCATGGATG
Found at i:1307570 original size:183 final size:186
Alignment explanation
Indices: 1307319--1307688 Score: 484
Period size: 183 Copynumber: 2.0 Consensus size: 186
1307309 TTGTTTCGAA
** * * *
1307319 AATATTTTAAGTTTAAAACACAATTTTACACTTTAGTAAGGATTGAAATTGACCTTTGAAAAACT
1 AATATTTTAAGAGTAAAACACAATTTTACACTTTAGTAAGGACTAAAATTGACATTTGAAAAACT
* * *
1307384 TGGAGTAATATTT-TGATATTCGAATAATTTAATCGAATA-TACT-TTAAAAAT-GATTATAAAA
66 TGGAGTAATATTTGTAATATTCGAATAATTAAATCGAATATTA-TATTAAAAATCGAATATAAAA
**
1307445 TCTTAAAATTTCAATAACACTTA-ATTTGTTATATCGAAACATCAAAATGTTTTCAAC
130 TCTTAAAA-TTCAATAACAAATATATTTGTTATATCGAAACATCAAAATGTTTTCAAC
* * * *
1307502 AATATTTTAAGAGTGAAACTCAATTTTTCA-TTTAAGTAAGGACTAAAATATGACATTT-TAAAA
1 AATATTTTAAGAGTAAAACACAATTTTACACTTT-AGTAAGGACTAAAAT-TGACATTTGAAAAA
* **
1307565 CTTGGAGTAATATTTGTAATATTTGAATAATTAAATCGAATATTATATTTGAAATCGAATATAAA
64 CTTGGAGTAATATTTGTAATATTCGAATAATTAAATCGAATATTATATTAAAAATCGAATATAAA
* *
1307630 ATCTTAAAATTCATTAACAAATATATTTGTTATATCGAAATATCAAAATGTTTTCAAC
129 ATCTTAAAATTCAATAACAAATATATTTGTTATATCGAAACATCAAAATGTTTTCAAC
1307688 A
1 A
1307689 CTCTTATTCC
Statistics
Matches: 161, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
182 3 0.02
183 57 0.35
184 31 0.19
185 19 0.12
186 51 0.32
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.38
Consensus pattern (186 bp):
AATATTTTAAGAGTAAAACACAATTTTACACTTTAGTAAGGACTAAAATTGACATTTGAAAAACT
TGGAGTAATATTTGTAATATTCGAATAATTAAATCGAATATTATATTAAAAATCGAATATAAAAT
CTTAAAATTCAATAACAAATATATTTGTTATATCGAAACATCAAAATGTTTTCAAC
Found at i:1318927 original size:19 final size:19
Alignment explanation
Indices: 1318903--1318941 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
1318893 AAACCTCCCA
1318903 ATAAGATCTATAAATAGAT
1 ATAAGATCTATAAATAGAT
1318922 ATAAGATCTATAAATAGAT
1 ATAAGATCTATAAATAGAT
1318941 A
1 A
1318942 CAGTTTACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.31
Consensus pattern (19 bp):
ATAAGATCTATAAATAGAT
Found at i:1327093 original size:32 final size:31
Alignment explanation
Indices: 1327024--1327128 Score: 153
Period size: 32 Copynumber: 3.5 Consensus size: 31
1327014 AGTGAGATTG
*
1327024 GTCGCCATGCAGT-TGGGCGAAGCAGGTATT
1 GTCGCCATGCAGTCGGGGCGAAGCAGGTATT
1327054 GTCGCCATGCAGTCGGGGCGAAGCAGGTATTT
1 GTCGCCATGCAGTCGGGGCGAAGCAGGTA-TT
* *
1327086 GTCGCCATGCAGTCGGGGCGAAG-AAGTA-G
1 GTCGCCATGCAGTCGGGGCGAAGCAGGTATT
1327115 GTCGCCATGCAGTC
1 GTCGCCATGCAGTC
1327129 TGTTGAAGGT
Statistics
Matches: 70, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
29 14 0.20
30 13 0.19
31 18 0.26
32 25 0.36
ACGTcount: A:0.20, C:0.23, G:0.37, T:0.20
Consensus pattern (31 bp):
GTCGCCATGCAGTCGGGGCGAAGCAGGTATT
Found at i:1327494 original size:21 final size:20
Alignment explanation
Indices: 1327408--1327565 Score: 86
Period size: 21 Copynumber: 7.8 Consensus size: 20
1327398 AAATGACCAA
**
1327408 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
1327427 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
1327447 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
1327467 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
1327488 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
1327509 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
1327529 CAAGAATCGCAACGCGAATAT
1 CAA-AATCGCAACGCGATTTT
*
1327550 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
1327566 ACACATAAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 42 0.40
21 46 0.44
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:1327748 original size:20 final size:20
Alignment explanation
Indices: 1327533--1327753 Score: 219
Period size: 20 Copynumber: 11.1 Consensus size: 20
1327523 GATTTTCAAG
** *
1327533 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATCCGTA
*
1327553 AATCGCAACGCGAA-CACATA
1 AATCGCAACGCGAATC-CGTA
*
1327573 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
* * *
1327593 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
1327613 AATAGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
* * *
1327633 AATCGCAATGCGTATTCGTA
1 AATCGCAACGCGAATCCGTA
* *
1327653 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
**
1327673 AATCGCAACGATAATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
1327693 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGAATCCGTA
**
1327713 AATCGCAACGATAATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
1327733 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGAATCCGTA
1327753 A
1 A
1327754 TCACAACACT
Statistics
Matches: 172, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
20 171 0.99
21 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGAATCCGTA
Found at i:1328486 original size:24 final size:23
Alignment explanation
Indices: 1328443--1328488 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
1328433 AAATTTGGTC
*
1328443 TTGGTCAATATCGGACTTTGATA
1 TTGGTCAATAACGGACTTTGATA
*
1328466 TTGGTCAATACACGGATTTTGAT
1 TTGGTCAATA-ACGGACTTTGAT
1328489 GATGTTTCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.39
Consensus pattern (23 bp):
TTGGTCAATAACGGACTTTGATA
Found at i:1328679 original size:12 final size:12
Alignment explanation
Indices: 1328662--1328686 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1328652 ATATAATCCT
1328662 GAAGAAGAAAAA
1 GAAGAAGAAAAA
1328674 GAAGAAGAAAAA
1 GAAGAAGAAAAA
1328686 G
1 G
1328687 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:1331017 original size:19 final size:19
Alignment explanation
Indices: 1330998--1331239 Score: 258
Period size: 19 Copynumber: 13.7 Consensus size: 19
1330988 TCCCAACATG
1330998 AAATCGCAATGCGGAAATGA
1 AAATCGCAATGC-GAAATGA
1331018 AAATCGCAATGCGAAATG-
1 AAATCGCAATGCGAAATGA
1331036 AAATCGCAA--CG--A-GA
1 AAATCGCAATGCGAAATGA
*
1331050 GAATCGCAATGCGGAAATGA
1 AAATCGCAATGC-GAAATGA
1331070 AAATCGCAATGCGAAATGA
1 AAATCGCAATGCGAAATGA
1331089 AAATCGCAA--CG--A-GA
1 AAATCGCAATGCGAAATGA
*
1331103 GAATCGCAATGCGAAATGA
1 AAATCGCAATGCGAAATGA
1331122 AAATCGCAATGCGAAATG-
1 AAATCGCAATGCGAAATGA
1331140 AAATCGCAA--CG--A-GA
1 AAATCGCAATGCGAAATGA
*
1331154 GAATCGCAATGCGAAATGA
1 AAATCGCAATGCGAAATGA
1331173 AAATCGCAATGCGAAATGA
1 AAATCGCAATGCGAAATGA
1331192 AAATCGCAA--CG--A-GA
1 AAATCGCAATGCGAAATGA
*
1331206 GAATCGCAATGCGGAAATGA
1 AAATCGCAATGC-GAAATGA
*
1331226 AAATCGCATTGCGA
1 AAATCGCAATGCGA
1331240 TTCTCTCGTT
Statistics
Matches: 189, Mismatches: 9, Indels: 49
0.77 0.04 0.20
Matches are distributed among these distances:
13 2 0.01
14 38 0.20
15 2 0.01
16 10 0.05
17 6 0.03
18 20 0.11
19 74 0.39
20 37 0.20
ACGTcount: A:0.45, C:0.17, G:0.24, T:0.14
Consensus pattern (19 bp):
AAATCGCAATGCGAAATGA
Found at i:1331024 original size:52 final size:53
Alignment explanation
Indices: 1330967--1331239 Score: 477
Period size: 52 Copynumber: 5.2 Consensus size: 53
1330957 GCAACGAGAG
*
1330967 AATCGCAATGCGAAATGAAAATCCCAAC-ATGA-AATCGCAATGCGGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGA-GAGAATCGCAATGCGGAAATGAA
1331019 AATCGCAATGCGAAATG-AAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
1331071 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGC-GAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
1331123 AATCGCAATGCGAAATG-AAATCGCAACGAGAGAATCGCAATGC-GAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
1331174 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
*
1331227 AATCGCATTGCGA
1 AATCGCAATGCGA
1331240 TTCTCTCGTT
Statistics
Matches: 214, Mismatches: 2, Indels: 9
0.95 0.01 0.04
Matches are distributed among these distances:
51 62 0.29
52 106 0.50
53 46 0.21
ACGTcount: A:0.45, C:0.18, G:0.23, T:0.14
Consensus pattern (53 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAA
Found at i:1331342 original size:52 final size:53
Alignment explanation
Indices: 1331229--1331345 Score: 218
Period size: 53 Copynumber: 2.2 Consensus size: 53
1331219 GAAATGAAAA
1331229 TCGCATTGCGATTCTCTCGTTGCGATTTTCATATCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATATCCGCATTGCGATTTTCATT
*
1331282 TCGCATTGCGATTCTCTCGTTGCGATTTTCAT-TTCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATATCCGCATTGCGATTTTCATT
1331334 TCGCATTGCGAT
1 TCGCATTGCGAT
1331346 AGTCATTTTT
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 31 0.49
53 32 0.51
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (53 bp):
TCGCATTGCGATTCTCTCGTTGCGATTTTCATATCCGCATTGCGATTTTCATT
Found at i:1331353 original size:19 final size:19
Alignment explanation
Indices: 1331248--1331345 Score: 134
Period size: 19 Copynumber: 5.4 Consensus size: 19
1331238 GATTCTCTCG
*
1331248 TTGCGATTTTCATATCCGCA
1 TTGCGATTTTCAT-TTCGCA
1331268 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
1331287 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
1331301 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
1331320 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
1331339 TTGCGAT
1 TTGCGAT
1331346 AGTCATTTTT
Statistics
Matches: 70, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
14 6 0.09
16 7 0.10
17 7 0.10
19 37 0.53
20 13 0.19
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.45
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:1331471 original size:14 final size:14
Alignment explanation
Indices: 1331452--1331490 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
1331442 CATCAATTAC
1331452 ACAAATCAATTTTT
1 ACAAATCAATTTTT
1331466 ACAAATC-ATCTTTT
1 ACAAATCAAT-TTTT
1331480 ACAAATCAATT
1 ACAAATCAATT
1331491 AAACAATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 2 0.09
14 19 0.83
15 2 0.09
ACGTcount: A:0.44, C:0.18, G:0.00, T:0.38
Consensus pattern (14 bp):
ACAAATCAATTTTT
Found at i:1333414 original size:20 final size:19
Alignment explanation
Indices: 1333389--1333434 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
1333379 TAGTTTACTT
*
1333389 TCGCAACACGAAACTTAAAA
1 TCGCAACACGAAA-TGAAAA
*
1333409 TCGCAACGCGAAATGAAAA
1 TCGCAACACGAAATGAAAA
1333428 TCGCAAC
1 TCGCAAC
1333435 GACAATCGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.46, C:0.26, G:0.15, T:0.13
Consensus pattern (19 bp):
TCGCAACACGAAATGAAAA
Found at i:1333429 original size:19 final size:18
Alignment explanation
Indices: 1333405--1333501 Score: 79
Period size: 19 Copynumber: 5.8 Consensus size: 18
1333395 CACGAAACTT
1333405 AAAATCGCAACGCGAAATG
1 AAAATCGCAA-GCGAAATG
1333424 AAAATCGCAA-C-----G
1 AAAATCGCAAGCGAAATG
*
1333436 ACAATCGCAATGCGAAATG
1 AAAATCGCAA-GCGAAATG
1333455 AAAATCGCAA-CG--A-G
1 AAAATCGCAAGCGAAATG
*
1333469 AGAATCGCAAGCGAAATG
1 AAAATCGCAAGCGAAATG
1333487 AAAATCGCAATGCGA
1 AAAATCGCAA-GCGA
1333502 TTTTGGTTTC
Statistics
Matches: 62, Mismatches: 4, Indels: 24
0.69 0.04 0.27
Matches are distributed among these distances:
12 10 0.16
14 11 0.18
15 3 0.05
17 4 0.06
18 10 0.16
19 24 0.39
ACGTcount: A:0.46, C:0.21, G:0.22, T:0.11
Consensus pattern (18 bp):
AAAATCGCAAGCGAAATG
Found at i:1333445 original size:31 final size:31
Alignment explanation
Indices: 1333407--1333496 Score: 137
Period size: 31 Copynumber: 2.8 Consensus size: 31
1333397 CGAAACTTAA
1333407 AATCGCAACGCGAAATGAAAATCGCAAC-GAC
1 AATCGCAA-GCGAAATGAAAATCGCAACAGAC
*
1333438 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAA-GCGAAATGAAAATCGCAAC-AGAC
1333471 AATCGCAAGCGAAATGAAAATCGCAA
1 AATCGCAAGCGAAATGAAAATCGCAA
1333497 TGCGATTTTG
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
31 27 0.49
32 18 0.33
33 10 0.18
ACGTcount: A:0.47, C:0.21, G:0.21, T:0.11
Consensus pattern (31 bp):
AATCGCAAGCGAAATGAAAATCGCAACAGAC
Found at i:1333532 original size:14 final size:14
Alignment explanation
Indices: 1333513--1333571 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
1333503 TTTGGTTTCG
1333513 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
1333527 CGTTGCGATTTTGGTTT
1 CGTTGCGATTTT-G--T
*
1333544 CGCGTTGCGATTCTGT
1 --CGTTGCGATTTTGT
1333560 CGTTGCGATTTT
1 CGTTGCGATTTT
1333572 CATTTCGCGT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 23 0.61
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 11 0.29
ACGTcount: A:0.07, C:0.17, G:0.29, T:0.47
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:1333539 original size:33 final size:33
Alignment explanation
Indices: 1333497--1333620 Score: 185
Period size: 33 Copynumber: 3.7 Consensus size: 33
1333487 AAAATCGCAA
*
1333497 TGCGATTTTGGTTTCGCGTTGCGATTTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1333530 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
** *
1333563 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
* *
1333596 TGCGATTTTAAGTTTCGTGTTGCGA
1 TGCGATTTT-GGTTTCGCGTTGCGA
1333621 AAGTAAACTA
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
33 71 0.86
34 12 0.14
ACGTcount: A:0.09, C:0.18, G:0.27, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:1333551 original size:19 final size:18
Alignment explanation
Indices: 1333497--1333588 Score: 83
Period size: 19 Copynumber: 5.4 Consensus size: 18
1333487 AAAATCGCAA
1333497 TGCGATTTTGGTTTCGCGT
1 TGCGATTTT-GTTTCGCGT
1333516 TGCGATTTTG--T--CGT
1 TGCGATTTTGTTTCGCGT
1333530 TGCGATTTTGGTTTCGCGT
1 TGCGATTTT-GTTTCGCGT
*
1333549 TGCGATTCTG--T--CGT
1 TGCGATTTTGTTTCGCGT
*
1333563 TGCGATTTTCATTTCGCGT
1 TGCGATTTT-GTTTCGCGT
1333582 TGCGATT
1 TGCGATT
1333589 CTCTCGTTGC
Statistics
Matches: 60, Mismatches: 3, Indels: 20
0.72 0.04 0.24
Matches are distributed among these distances:
14 23 0.38
15 1 0.02
16 2 0.03
17 2 0.03
18 2 0.03
19 30 0.50
ACGTcount: A:0.08, C:0.17, G:0.28, T:0.47
Consensus pattern (18 bp):
TGCGATTTTGTTTCGCGT
Found at i:1333598 original size:14 final size:14
Alignment explanation
Indices: 1333546--1333602 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
1333536 TTTGGTTTCG
*
1333546 CGTTGCGATTCTGT
1 CGTTGCGATTCTCT
*
1333560 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
1333579 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
1333593 CGTTGCGATT
1 CGTTGCGATT
1333603 TTAAGTTTCG
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 20 0.57
16 3 0.09
17 3 0.09
19 9 0.26
ACGTcount: A:0.09, C:0.23, G:0.25, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:1333979 original size:90 final size:93
Alignment explanation
Indices: 1333715--1334026 Score: 569
Period size: 92 Copynumber: 3.4 Consensus size: 93
1333705 TCAGGGTATT
1333715 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
1333780 TACTATTTCACAGTGTTAAAGAATACAC
66 TACTATTTCACAGTGTTAAAGAATACAC
1333808 AGTTTAGCAGAA-TGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
*
1333872 TACTATTTCACATTGTTAAAGAATACAC
66 TACTATTTCACAGTGTTAAAGAATACAC
1333900 AGTTTAGCAGAATTGGCAGCAA-CGAAC-AATTTACTTTC-ACCAAAAGACAAAACAAAGACAAA
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
1333962 TACTATTTCACAGTGTTAAAGAATACAC
66 TACTATTTCACAGTGTTAAAGAATACAC
* *
1333990 CGTTTAGCAGAATTGGCAGCAACCGAATAAATTTACT
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACT
1334027 AAGCAATCTA
Statistics
Matches: 212, Mismatches: 4, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
90 72 0.34
91 15 0.07
92 104 0.49
93 21 0.10
ACGTcount: A:0.45, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TACTATTTCACAGTGTTAAAGAATACAC
Done.