genome.fa.s8285.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008285.1 Hibiscus syriacus cultivar Beakdansim tig00110948_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146154

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1835--1881	20	2.3	20	79	13	60	19	17	10	53	1.72
12082--12123	9	4.8	9	79	5	50	47	0	0	52	1.00
12085--12123	17	2.2	17	90	4	60	51	0	0	48	1.00
12082--12121	8	4.8	8	84	9	53	47	0	0	52	1.00
12740--12797	20	2.7	20	86	10	71	27	22	18	31	1.97
12785--12921	64	2.2	63	81	6	152	24	24	18	32	1.97
16399--16448	23	2.1	24	81	7	57	36	22	14	28	1.92
17172--17229	20	2.7	20	86	10	71	27	22	18	31	1.97
27856--27900	5	8.8	5	90	4	72	80	0	2	17	0.82
27864--27925	5	11.0	6	87	6	53	72	0	1	25	0.94
27890--27930	22	1.9	21	85	5	55	63	0	4	31	1.15
28069--28808	261	2.8	259	85	2	968	33	16	15	35	1.90
31055--31104	20	2.5	20	90	0	82	32	24	20	24	1.98
32668--32706	21	1.9	19	85	10	51	28	7	7	56	1.55
37398--37471	23	3.5	21	83	5	87	35	16	21	27	1.94
39717--39857	64	2.2	63	80	7	151	26	23	17	31	1.97
41825--41851	12	2.2	12	100	0	54	22	37	14	25	1.93
50218--50267	17	3.4	17	65	35	51	12	8	26	54	1.64
50212--50279	27	2.5	27	90	4	84	8	8	25	57	1.58
50212--50268	27	2.1	27	100	0	114	10	7	26	56	1.59
53460--53490	7	4.4	7	91	0	53	25	25	29	19	1.99
53494--53538	19	2.4	19	82	14	65	22	26	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53503--53596	9	9.7	10	74	11	72	29	25	25	19	1.98
53522--53596	29	2.5	31	85	8	102	30	25	25	18	1.98
60829--60866	7	5.4	7	87	0	58	28	26	26	18	1.98
60856--60890	17	2.1	17	94	0	61	14	22	45	17	1.84
60894--60941	9	5.1	9	80	7	51	27	29	27	16	1.97
67946--67974	2	14.5	2	100	0	58	48	0	0	51	1.00
80356--80392	6	6.2	6	96	0	56	72	16	10	0	1.10
83046--83100	27	2.0	27	100	0	110	36	23	3	36	1.73
89891--89932	19	2.2	19	86	0	57	30	28	16	23	1.96
89991--90060	20	3.5	19	80	7	86	25	24	15	34	1.95
89993--90069	40	1.9	40	89	5	120	25	23	14	36	1.93
89993--90080	40	2.2	40	86	8	117	27	22	13	36	1.92
90061--90099	18	2.2	18	85	0	51	35	15	10	38	1.81
91842--92009	76	2.2	78	87	5	245	22	33	23	19	1.97
92208--92249	18	2.4	17	84	11	50	61	16	14	7	1.53
97781--97864	21	3.9	21	74	10	62	23	36	25	14	1.92
99779--99829	9	6.2	8	76	19	52	13	0	27	58	1.36
99781--99824	17	2.6	17	85	7	63	13	0	29	56	1.38
100432--100598	76	2.2	76	86	4	221	23	33	23	19	1.97
100797--100838	18	2.4	17	84	11	50	61	16	14	7	1.53
102917--103763	450	1.9	450	92	0	1417	25	23	26	24	2.00
103864--103900	18	2.1	18	94	0	65	56	24	2	16	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104168--104210	20	2.2	20	91	0	68	18	13	25	41	1.88
104269--104419	64	2.4	64	89	1	223	52	15	2	28	1.56
104398--104430	13	2.4	14	95	5	59	48	21	0	30	1.50
105760--105835	21	3.7	20	72	13	64	23	19	30	26	1.98
105753--105861	42	2.6	41	78	4	128	27	17	32	22	1.97
105753--105857	21	5.1	20	66	17	61	26	17	32	23	1.96
108350--108392	22	2.0	21	86	8	61	18	18	46	16	1.84
108496--108533	20	2.0	20	84	5	51	44	13	15	26	1.83
108540--108586	18	2.5	20	93	6	80	17	12	25	44	1.84
108577--108626	20	2.5	20	90	0	82	24	18	22	36	1.95
123566--123606	13	3.2	13	76	16	50	51	0	0	48	1.00
123561--123606	25	2.0	23	87	12	67	45	0	0	54	0.99
137032--137056	2	12.5	2	100	0	50	52	0	0	48	1.00
141070--141208	59	2.4	59	82	8	167	28	22	6	42	1.78
141341--141464	58	2.1	58	80	12	130	37	4	23	34	1.74

Tables:   1

The End!