Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008289.1 Hibiscus syriacus cultivar Beakdansim tig00110952_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 518235
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 2 of 2
Found at i:422951 original size:30 final size:31
Alignment explanation
Indices: 422915--422974 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
422905 CTTAGCTTTA
**
422915 TATTATGTTTACATATGTTTTAGAT-TCATT
1 TATTATGTTTACATATCATTTAGATATCATT
*
422945 TATTATGTTTGCATATCATTTAGATATCAT
1 TATTATGTTTACATATCATTTAGATATCAT
422975 GGCAACATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.28, C:0.08, G:0.10, T:0.53
Consensus pattern (31 bp):
TATTATGTTTACATATCATTTAGATATCATT
Found at i:423450 original size:10 final size:10
Alignment explanation
Indices: 423437--423480 Score: 52
Period size: 10 Copynumber: 4.1 Consensus size: 10
423427 TGGACTAAAG
423437 GTAGCTGGAA
1 GTAGCTGGAA
*
423447 GTAGGTGGAA
1 GTAGCTGGAA
423457 GTAGCTGGGAGA
1 GTAGCT-GGA-A
423469 GTAGCTGAGAA
1 GTAGCTG-GAA
423480 G
1 G
423481 ACCAAAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
10 14 0.48
11 6 0.21
12 9 0.31
ACGTcount: A:0.30, C:0.07, G:0.45, T:0.18
Consensus pattern (10 bp):
GTAGCTGGAA
Found at i:423862 original size:19 final size:20
Alignment explanation
Indices: 423835--423890 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
423825 CCATTTGGCC
* *
423835 AAAAGCATGTATCTTCA-TT
1 AAAATCATGTATTTTCACTT
423854 AAAATCATGTATTTTCACTT
1 AAAATCATGTATTTTCACTT
423874 AAAATCATGTATTTTCA
1 AAAATCATGTATTTTCA
423891 AAGGGGTTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 15 0.44
20 19 0.56
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (20 bp):
AAAATCATGTATTTTCACTT
Found at i:425085 original size:23 final size:23
Alignment explanation
Indices: 425058--425111 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
425048 AAAAATCAGA
* *
425058 AAAGAAAGTGAAGCACTCAAAAG
1 AAAGAAAATCAAGCACTCAAAAG
*
425081 AAAGAAAAATCCAGCACTCAAAAG
1 AAAG-AAAATCAAGCACTCAAAAG
425105 -AAGAAAA
1 AAAGAAAA
425112 AGCAAAGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.15
23 7 0.26
24 16 0.59
ACGTcount: A:0.61, C:0.15, G:0.17, T:0.07
Consensus pattern (23 bp):
AAAGAAAATCAAGCACTCAAAAG
Found at i:440168 original size:17 final size:17
Alignment explanation
Indices: 440156--440216 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
440146 TAGTTTATTA
* * *
440156 AATGAACTAGTTTGATG
1 AATGAACTACTTTAATT
440173 AATGAACTACTTTAATT
1 AATGAACTACTTTAATT
*
440190 AATGAACCAACTTT-ATT
1 AATGAA-CTACTTTAATT
440207 CAATGAACTA
1 -AATGAACTA
440217 TATGCATGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 25 0.68
18 12 0.32
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.34
Consensus pattern (17 bp):
AATGAACTACTTTAATT
Found at i:442890 original size:24 final size:21
Alignment explanation
Indices: 442855--442897 Score: 50
Period size: 23 Copynumber: 1.9 Consensus size: 21
442845 GGCATATTCT
*
442855 TTTGAATTTCAAGAGGTACATCC
1 TTTGAATGTCAA-AGG-ACATCC
442878 TTTGAAATGTCAAAGGACAT
1 TTTG-AATGTCAAAGGACAT
442898 GTCTTGTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 4 0.22
23 7 0.39
24 7 0.39
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (21 bp):
TTTGAATGTCAAAGGACATCC
Found at i:448921 original size:8 final size:8
Alignment explanation
Indices: 448909--448960 Score: 79
Period size: 8 Copynumber: 6.5 Consensus size: 8
448899 AAATAAGAGA
448909 AAAAGAAG
1 AAAAGAAG
448917 AAAAGAAG
1 AAAAGAAG
448925 AAAAGAAG
1 AAAAGAAG
448933 AAAAGAAG
1 AAAAGAAG
448941 AAAAGAA-
1 AAAAGAAG
*
448948 AAGAAAAAG
1 AA-AAGAAG
448957 AAAA
1 AAAA
448961 ATTCAAAAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
7 2 0.05
8 37 0.90
9 2 0.05
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (8 bp):
AAAAGAAG
Found at i:448922 original size:16 final size:16
Alignment explanation
Indices: 448888--448961 Score: 71
Period size: 16 Copynumber: 4.4 Consensus size: 16
448878 GCAAAAAGAA
*
448888 AGAAAAAGACAAAATAAG
1 AGAAAAAGA-AGAA-AAG
448906 AGAAAAAGAAGAAAAG
1 AGAAAAAGAAGAAAAG
448922 A-AGAAAAGAAGAAAAG
1 AGA-AAAAGAAGAAAAG
*
448938 AAGAAAAGAAAAGAAAA-
1 -AGAAAA-AGAAGAAAAG
448955 AGAAAAA
1 AGAAAAA
448962 TTCAAAAAGA
Statistics
Matches: 50, Mismatches: 2, Indels: 11
0.79 0.03 0.17
Matches are distributed among these distances:
15 2 0.04
16 23 0.46
17 7 0.14
18 18 0.36
ACGTcount: A:0.77, C:0.01, G:0.20, T:0.01
Consensus pattern (16 bp):
AGAAAAAGAAGAAAAG
Found at i:448930 original size:24 final size:24
Alignment explanation
Indices: 448880--448961 Score: 78
Period size: 24 Copynumber: 3.2 Consensus size: 24
448870 ATTGGAGTGC
*
448880 AAAAAGAAAGAAAAAGACAAAATAAGAG
1 AAAAAG-AAG-AAAAGA-AGAA-AAGAG
448908 AAAAAGAAGAAAAGAAGAAAAGA-
1 AAAAAGAAGAAAAGAAGAAAAGAG
448931 AGAAAAGAAGAAAAGAAAAGAAAA-AG
1 A-AAAAGAAGAAAAG--AAGAAAAGAG
448957 AAAAA
1 AAAAA
448962 TTCAAAAAGA
Statistics
Matches: 49, Mismatches: 1, Indels: 11
0.80 0.02 0.18
Matches are distributed among these distances:
23 1 0.02
24 17 0.35
25 8 0.16
26 14 0.29
27 3 0.06
28 6 0.12
ACGTcount: A:0.78, C:0.01, G:0.20, T:0.01
Consensus pattern (24 bp):
AAAAAGAAGAAAAGAAGAAAAGAG
Found at i:454181 original size:11 final size:11
Alignment explanation
Indices: 454165--454190 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
454155 CATATATGAT
454165 ACAAACATAGG
1 ACAAACATAGG
454176 ACAAACATAGG
1 ACAAACATAGG
454187 ACAA
1 ACAA
454191 TATATGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.19, G:0.15, T:0.08
Consensus pattern (11 bp):
ACAAACATAGG
Found at i:462417 original size:5 final size:5
Alignment explanation
Indices: 462398--462435 Score: 60
Period size: 5 Copynumber: 7.6 Consensus size: 5
462388 GTGCTTTAAC
462398 TTTC- TTTCTT TTTCT TTTCT TTTCT TTTCT TTTCT TTT
1 TTTCT TTTC-T TTTCT TTTCT TTTCT TTTCT TTTCT TTT
462436 TCTTCCTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 4 0.12
5 24 0.75
6 4 0.12
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTCT
Found at i:462444 original size:15 final size:15
Alignment explanation
Indices: 462398--462445 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
462388 GTGCTTTAAC
462398 TTTCTTTCTT-TTTCT
1 TTTCTTT-TTCTTTCT
462413 TTTC-TTTTCTTTTCT
1 TTTCTTTTTC-TTTCT
*
462428 TTTCTTTTTCTTCCT
1 TTTCTTTTTCTTTCT
462443 TTT
1 TTT
462446 TGAGTGCTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
13 2 0.07
14 2 0.07
15 20 0.69
16 5 0.17
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTCTTTTTCTTTCT
Found at i:462493 original size:22 final size:23
Alignment explanation
Indices: 462445--462493 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
462435 TTCTTCCTTT
* *
462445 TTGAGTGCTTTCAATTTCTTCTT
1 TTGAGTGCTTTCAATTTATTCTG
* *
462468 TTGAGTGCTTTGATTTTATT-TG
1 TTGAGTGCTTTCAATTTATTCTG
462490 TTGA
1 TTGA
462494 ATTTTTCTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.14, C:0.10, G:0.18, T:0.57
Consensus pattern (23 bp):
TTGAGTGCTTTCAATTTATTCTG
Found at i:468258 original size:16 final size:16
Alignment explanation
Indices: 468237--468268 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
468227 GAGTGCTTGC
468237 AACATTCGTACAACTT
1 AACATTCGTACAACTT
468253 AACATTCGTACAACTT
1 AACATTCGTACAACTT
468269 CTCTTTGAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (16 bp):
AACATTCGTACAACTT
Found at i:468387 original size:12 final size:11
Alignment explanation
Indices: 468367--468404 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
468357 GATGTATGAG
468367 TCTTTTTCTTT
1 TCTTTTTCTTT
468378 TCTCTTTTCTTT
1 TCT-TTTTCTTT
*
468390 TCTTTTTTTTT
1 TCTTTTTCTTT
468401 TCTT
1 TCTT
468405 GTTGCTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TCTTTTTCTTT
Found at i:475221 original size:20 final size:20
Alignment explanation
Indices: 475196--475242 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
475186 TCGTTCGCAA
475196 TTTTTTGAAATTTTGGCTTT
1 TTTTTTGAAATTTTGGCTTT
***
475216 TTTTTTGTTTTTTTGGCTTT
1 TTTTTTGAAATTTTGGCTTT
475236 TTTTTTG
1 TTTTTTG
475243 TTTTTGTTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.06, C:0.04, G:0.15, T:0.74
Consensus pattern (20 bp):
TTTTTTGAAATTTTGGCTTT
Found at i:475246 original size:10 final size:10
Alignment explanation
Indices: 475213--475258 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
475203 AAATTTTGGC
475213 TTTTTTTTTG
1 TTTTTTTTTG
*
475223 -TTTTTTTGG
1 TTTTTTTTTG
475232 CTTTTTTTTTG
1 -TTTTTTTTTG
*
475243 TTTTTGTTTG
1 TTTTTTTTTG
475253 TTTTTT
1 TTTTTT
475259 GAAAAAAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
9 8 0.27
10 14 0.47
11 8 0.27
ACGTcount: A:0.00, C:0.02, G:0.13, T:0.85
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:475258 original size:20 final size:20
Alignment explanation
Indices: 475206--475247 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
475196 TTTTTTGAAA
475206 TTTTGGCTTTTTTTTTGTTT
1 TTTTGGCTTTTTTTTTGTTT
475226 TTTTGGCTTTTTTTTTGTTT
1 TTTTGGCTTTTTTTTTGTTT
475246 TT
1 TT
475248 GTTTGTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.00, C:0.05, G:0.14, T:0.81
Consensus pattern (20 bp):
TTTTGGCTTTTTTTTTGTTT
Found at i:489928 original size:10 final size:10
Alignment explanation
Indices: 489913--489939 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
489903 TTCAACTTTC
489913 TTTCTTTTTT
1 TTTCTTTTTT
489923 TTTCTTTTTT
1 TTTCTTTTTT
489933 TTTCTTT
1 TTTCTTT
489940 GAGTTCTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:489928 original size:14 final size:15
Alignment explanation
Indices: 489908--489939 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
489898 AGTGCTTCAA
489908 CTTTCTTTCTTTTTT
1 CTTTCTTTCTTTTTT
489923 -TTTCTTT-TTTTTT
1 CTTTCTTTCTTTTTT
489936 CTTT
1 CTTT
489940 GAGTTCTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 3
0.84 0.00 0.16
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
CTTTCTTTCTTTTTT
Found at i:492297 original size:19 final size:20
Alignment explanation
Indices: 492261--492300 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
492251 GGGTAATAAT
492261 ATAAGTAATGAAAAGAAATA
1 ATAAGTAATGAAAAGAAATA
* *
492281 ATAAG-AATTAAATGAAATA
1 ATAAGTAATGAAAAGAAATA
492300 A
1 A
492301 ATAAAGGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.23
Consensus pattern (20 bp):
ATAAGTAATGAAAAGAAATA
Found at i:492754 original size:19 final size:20
Alignment explanation
Indices: 492713--492763 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
492703 GAAACCCCTT
*
492713 TGAAAATACATGATTTTTGA
1 TGAAAATACATGATTTTTAA
492733 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
492752 TGAAGATACATG
1 TGAAAATACATG
492764 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Found at i:498305 original size:24 final size:24
Alignment explanation
Indices: 498272--498325 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
498262 AGTTACCAGC
*
498272 TGAGCCCAGAGCTCATAGCTCACT
1 TGAGCTCAGAGCTCATAGCTCACT
498296 TGAGCTCAGAGCTCATAGCTCACT
1 TGAGCTCAGAGCTCATAGCTCACT
498320 TGAGCT
1 TGAGCT
498326 GGACTTTTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (24 bp):
TGAGCTCAGAGCTCATAGCTCACT
Found at i:499729 original size:28 final size:26
Alignment explanation
Indices: 499688--499741 Score: 74
Period size: 25 Copynumber: 2.0 Consensus size: 26
499678 CAACAAAAGC
499688 AACAAAAAGAGAAAAAGAAAGAAGAAAAA
1 AACAAAAAGAG-AAAAG-AA-AAGAAAAA
499717 AACAAAAA-AGAAAAGAAAAGAAAAA
1 AACAAAAAGAGAAAAGAAAAGAAAAA
499742 TACTCCTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 8 0.32
26 2 0.08
27 5 0.20
28 2 0.08
29 8 0.32
ACGTcount: A:0.81, C:0.04, G:0.15, T:0.00
Consensus pattern (26 bp):
AACAAAAAGAGAAAAGAAAAGAAAAA
Found at i:499731 original size:23 final size:22
Alignment explanation
Indices: 499699--499741 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
499689 ACAAAAAGAG
499699 AAAAAGAAAGAAGAA-AAAAACA
1 AAAAAGAAAGAA-AAGAAAAACA
499721 AAAAAGAAAAGAAAAGAAAAA
1 AAAAAG-AAAGAAAAGAAAAA
499742 TACTCCTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.84, C:0.02, G:0.14, T:0.00
Consensus pattern (22 bp):
AAAAAGAAAGAAAAGAAAAACA
Found at i:499740 original size:15 final size:15
Alignment explanation
Indices: 499691--499730 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
499681 CAAAAGCAAC
* *
499691 AAAAAGAGAAAAAGA
1 AAAAAGAAAAAAACA
*
499706 AAGAAGAAAAAAACA
1 AAAAAGAAAAAAACA
499721 AAAAAGAAAA
1 AAAAAGAAAA
499731 GAAAAGAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAAACA
Found at i:502781 original size:16 final size:15
Alignment explanation
Indices: 502748--502799 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
502738 GTAAGTTATC
502748 TTCATTTTTTATCAT
1 TTCATTTTTTATCAT
502763 TTCATTTCTTTATTC-T
1 TTCATTT-TTTA-TCAT
* * *
502779 TTCATCTTTTCTTAT
1 TTCATTTTTTATCAT
502794 TTCATT
1 TTCATT
502800 ACCATATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
14 1 0.03
15 16 0.53
16 11 0.37
17 2 0.07
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.67
Consensus pattern (15 bp):
TTCATTTTTTATCAT
Found at i:506010 original size:35 final size:37
Alignment explanation
Indices: 505941--506020 Score: 128
Period size: 35 Copynumber: 2.2 Consensus size: 37
505931 ATACTATTTC
*
505941 CATCACCATAATCCATCTTCCATTATCACGCCTATAT
1 CATCACCATAATCCATCTACCATTATCACGCCTATAT
*
505978 CATCACCATAGTCCATC-ACCA-TATCACGCCTATAT
1 CATCACCATAATCCATCTACCATTATCACGCCTATAT
506013 CATCACCA
1 CATCACCA
506021 AATTCTCAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
35 22 0.54
36 3 0.07
37 16 0.39
ACGTcount: A:0.31, C:0.38, G:0.04, T:0.28
Consensus pattern (37 bp):
CATCACCATAATCCATCTACCATTATCACGCCTATAT
Found at i:512513 original size:845 final size:845
Alignment explanation
Indices: 510884--512572 Score: 3189
Period size: 845 Copynumber: 2.0 Consensus size: 845
510874 ATCTTCCCTT
*
510884 TTAAAAGGTTCATTCGATCTTGAGTATGAGGTGAATGTACTTTGAAGGTTAATGAACATGTTCTT
1 TTAAAAGGTTCATTCGATATTGAGTATGAGGTGAATGTACTTTGAAGGTTAATGAACATGTTCTT
510949 TATAATTTCAAGTGACACATCTTTTGGAATTTCAAAAGAAATGATGCTTGAATCATCTTGAATGT
66 TATAATTTCAAGTGACACATCTTTTGGAATTTCAAAAGAAATGATGCTTGAATCATCTTGAATGT
*
511014 CCCTTGGAATAACCTGTAAATTCAAATAATGAATAGAAGAAAAAAATTGATTAGTATAAACCAAA
131 CCCTTGGAATAACCTGTAAATTCAAAGAATGAATAGAAGAAAAAAATTGATTAGTATAAACCAAA
511079 ACTTCCTTCTCCTCGCATTCGTTCATTTCATGCTAATGTTTTTAAACACACTCATCTTCACTCTC
196 ACTTCCTTCTCCTCGCATTCGTTCATTTCATGCTAATGTTTTTAAACACACTCATCTTCACTCTC
511144 ATTTTCAACTCCAAATGTCTTGGTTTTCTCACAATGTTCTTCTTTGATTTGTGCATGTTCAACTC
261 ATTTTCAACTCCAAATGTCTTGGTTTTCTCACAATGTTCTTCTTTGATTTGTGCATGTTCAACTC
*
511209 CATCATATCTTTTAACCACAACCTCACTTTTAATCTTTTCATTTTCTCTTCTACATGCACTTCCC
326 CATCATATCTTTTAACCACAACCTCACTTTTAATCTTTTCATTTTCTCTTCTACACGCACTTCCC
* *
511274 CCTTTGCTCTTAAATTCAATCTTTTCAACTTTCTCATTTTTGACTCCAATATTTCTCACATCAAT
391 CCTTTGCTCTCAAATTCAATCTTTTCAACTTTCTCATTTTTGACTCCAATATTTCTCAAATCAAT
*
511339 TTTCTCATTTTCATTTTGATATCCCTCCACTGTTATTTGTTTCTCACGTGAAACTTCTTTTTCAA
456 TTTCTCATTTTCATTTTGATATCCCTCCACTGTTAGTTGTTTCTCACGTGAAACTTCTTTTTCAA
511404 CTTTCTTCATGGCTTTAGTTTTCTTCCATTCCTATATACGTGATTTGACGATAACTTGACATTCA
521 CTTTCTTCATGGCTTTAGTTTTCTTCCATTCCTATATACGTGATTTGACGATAACTTGACATTCA
511469 TGGACTTGATTTGGGTACATTGGAACCAACATAATCATTCTCCCTTGGTGTTTGAATGAATATTT
586 TGGACTTGATTTGGGTACATTGGAACCAACATAATCATTCTCCCTTGGTGTTTGAATGAATATTT
*
511534 ACTGGAGAACCCATCATACAATGCTCGTTTATCAAACTGCCAAGGACGTCCGAGAAGTAGATGGC
651 ACTGGAGAACCCATCATACAATGCTCGTTTATCAAACTACCAAGGACGTCCGAGAAGTAGATGGC
* *
511599 TTGAATTCATAGAAACAACATTATACAAGACTTCATCTTCATATCTCCCAATTGAAAATGACACA
716 TTGAATTCATAAAAACAACATCATACAAGACTTCATCTTCATATCTCCCAATTGAAAATGACACA
511664 AGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTTAATCCTTGCAAAACATATGGACTGGA
781 AGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTTAATCCTTGCAAAACATATGGACTGGA
* *
511729 TTAAAAGTTTCATTTGATATTGAGTATGAGGTGAATGTACTTTGAAGGTTAATGAACATGTTCTT
1 TTAAAAGGTTCATTCGATATTGAGTATGAGGTGAATGTACTTTGAAGGTTAATGAACATGTTCTT
511794 TATAATTTCAAGTGACACATCTTTTGGAATTTCAAAAGAAATGATGCTTGAATCATCTTGAATGT
66 TATAATTTCAAGTGACACATCTTTTGGAATTTCAAAAGAAATGATGCTTGAATCATCTTGAATGT
*
511859 CCCTTGGATTAACCTGTAAATTCAAAGAATGAATAGAAGAAAAAAATTGATTAGTATAAACCAAA
131 CCCTTGGAATAACCTGTAAATTCAAAGAATGAATAGAAGAAAAAAATTGATTAGTATAAACCAAA
* *
511924 ACTTCCTTCTCCTCGCATTCGTTCATTTCATGCTCATGTTTTTCAACACACTCATCTTCACTCTC
196 ACTTCCTTCTCCTCGCATTCGTTCATTTCATGCTAATGTTTTTAAACACACTCATCTTCACTCTC
*
511989 ATTTTCAACTTCAAATGTCTTGGTTTTCTCACAATGTTCTTCTTTGATTTGTGCATGTTCAACTC
261 ATTTTCAACTCCAAATGTCTTGGTTTTCTCACAATGTTCTTCTTTGATTTGTGCATGTTCAACTC
512054 CATCATATCTTTTAACCACAACCTCACTTTTAATCTTTTCATTTTCTCTTCTACACGCACTTCCC
326 CATCATATCTTTTAACCACAACCTCACTTTTAATCTTTTCATTTTCTCTTCTACACGCACTTCCC
*
512119 CCTTTGCTCTCAAATTTAATCTTTTCAACTTTCTCATTTTTGACTCCAATATTTCTCAAATCAAT
391 CCTTTGCTCTCAAATTCAATCTTTTCAACTTTCTCATTTTTGACTCCAATATTTCTCAAATCAAT
*
512184 TTTCTCATTTTCATTTTGATCTCCCTCCACTGTTAGTTGTTTCTCACGTGAAACTTCTTTTTCAA
456 TTTCTCATTTTCATTTTGATATCCCTCCACTGTTAGTTGTTTCTCACGTGAAACTTCTTTTTCAA
* *
512249 CTTTCTTCATGGCTTTAGTTTTCTTCCATTCCTCTATACGTGATTTGACGATAATTTGACATTCA
521 CTTTCTTCATGGCTTTAGTTTTCTTCCATTCCTATATACGTGATTTGACGATAACTTGACATTCA
*
512314 TGGACTTGATTTGGGTACATTGGAACCAACGTAATCATTCTCCCTTGGTGTTTGAATGAATATTT
586 TGGACTTGATTTGGGTACATTGGAACCAACATAATCATTCTCCCTTGGTGTTTGAATGAATATTT
*
512379 ATTGGAGAACCCATCATACAATGCTCGTTTATCAAACTACCAAGGACGTCCGAGAAGTAGATGGC
651 ACTGGAGAACCCATCATACAATGCTCGTTTATCAAACTACCAAGGACGTCCGAGAAGTAGATGGC
512444 TTGAATTCATAAAAACAACATCATACAAGACTTCATCTTCATATCTCCCAATTGAAAATGACACA
716 TTGAATTCATAAAAACAACATCATACAAGACTTCATCTTCATATCTCCCAATTGAAAATGACACA
512509 AGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTTAATCCTTGCAAAACATATGGACTGG
781 AGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTTAATCCTTGCAAAACATATGGACTGG
512573 GATGTTTGAA
Statistics
Matches: 823, Mismatches: 21, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
845 823 1.00
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.38
Consensus pattern (845 bp):
TTAAAAGGTTCATTCGATATTGAGTATGAGGTGAATGTACTTTGAAGGTTAATGAACATGTTCTT
TATAATTTCAAGTGACACATCTTTTGGAATTTCAAAAGAAATGATGCTTGAATCATCTTGAATGT
CCCTTGGAATAACCTGTAAATTCAAAGAATGAATAGAAGAAAAAAATTGATTAGTATAAACCAAA
ACTTCCTTCTCCTCGCATTCGTTCATTTCATGCTAATGTTTTTAAACACACTCATCTTCACTCTC
ATTTTCAACTCCAAATGTCTTGGTTTTCTCACAATGTTCTTCTTTGATTTGTGCATGTTCAACTC
CATCATATCTTTTAACCACAACCTCACTTTTAATCTTTTCATTTTCTCTTCTACACGCACTTCCC
CCTTTGCTCTCAAATTCAATCTTTTCAACTTTCTCATTTTTGACTCCAATATTTCTCAAATCAAT
TTTCTCATTTTCATTTTGATATCCCTCCACTGTTAGTTGTTTCTCACGTGAAACTTCTTTTTCAA
CTTTCTTCATGGCTTTAGTTTTCTTCCATTCCTATATACGTGATTTGACGATAACTTGACATTCA
TGGACTTGATTTGGGTACATTGGAACCAACATAATCATTCTCCCTTGGTGTTTGAATGAATATTT
ACTGGAGAACCCATCATACAATGCTCGTTTATCAAACTACCAAGGACGTCCGAGAAGTAGATGGC
TTGAATTCATAAAAACAACATCATACAAGACTTCATCTTCATATCTCCCAATTGAAAATGACACA
AGTACTTGCTCTATGACTTCTAACTCTTCATCTTCATTTAATCCTTGCAAAACATATGGACTGGA
Done.