genome.fa.s829.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000829.1 Hibiscus syriacus cultivar Beakdansim tig00001604_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70012

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3499--3539	20	2.1	20	95	4	75	41	17	14	26	1.88
6139--6232	34	2.8	34	77	17	115	62	15	7	13	1.52
6140--6246	23	4.7	23	71	17	98	61	15	9	13	1.56
6505--6550	24	1.9	24	90	0	74	58	10	13	17	1.62
7385--7423	14	2.8	14	100	0	78	41	0	0	58	0.98
7624--7680	29	1.9	30	89	3	89	31	14	10	43	1.79
9147--9198	21	2.5	21	100	0	104	17	19	7	55	1.65
13927--13956	13	2.3	13	94	0	51	43	20	16	20	1.88
16227--16362	36	3.8	36	84	1	175	33	21	25	20	1.97
16227--16387	72	2.2	72	83	5	202	31	20	24	22	1.98
19382--19411	13	2.3	13	94	0	51	43	20	16	20	1.88
26745--26772	2	14.0	2	100	0	56	50	0	0	50	1.00
28316--28467	75	2.0	76	98	1	297	22	19	10	48	1.79
29316--29429	57	2.0	57	91	0	183	36	16	8	37	1.80
35399--35443	21	2.1	21	87	0	63	31	28	24	15	1.96
37134--37200	22	3.0	22	95	2	116	19	26	28	25	1.99
40338--40382	21	2.1	21	87	0	63	31	28	24	15	1.96
42079--42145	22	3.0	22	95	2	116	19	26	28	25	1.99
44550--44587	20	1.9	20	88	0	58	26	34	26	13	1.93
55176--55311	72	1.9	69	80	12	152	31	6	5	55	1.49
56766--56817	20	2.6	20	100	0	104	9	25	23	42	1.84
56741--56857	61	1.9	60	83	10	148	17	21	23	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56952--56976	6	4.2	6	100	0	50	36	48	16	0	1.46
57616--57794	22	8.4	22	83	7	244	38	25	18	17	1.92
57598--57814	63	3.4	62	83	8	269	39	23	19	17	1.92
57616--57794	85	2.1	85	96	0	331	38	25	18	17	1.92
57786--57858	20	3.6	20	77	3	92	38	24	21	15	1.92
57783--57887	21	5.1	21	73	4	106	37	25	19	18	1.94
57783--57883	41	2.5	41	100	0	202	36	24	19	18	1.95
60937--60985	22	2.2	22	82	7	64	32	30	28	8	1.86
62448--62663	103	2.1	102	93	1	362	25	13	24	37	1.92
62679--62737	23	2.6	23	94	0	100	18	23	28	28	1.98
62670--62747	23	3.3	23	83	1	84	23	17	23	35	1.95
63800--63837	20	2.0	20	89	5	60	26	31	15	26	1.96
64628--65346	359	2.0	359	94	0	1267	34	16	17	31	1.93

Tables:   1

The End!