Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008292.1 Hibiscus syriacus cultivar Beakdansim tig00110956_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1591938
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
File 1 of 8
Found at i:15677 original size:20 final size:20
Alignment explanation
Indices: 15652--15689 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
15642 TAGTTGAAAA
15652 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
15672 TCGCGTTGCGATTTTCCA
1 TCGCGTTGCGATTTTCCA
15690 AATTTGTTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.11, C:0.26, G:0.21, T:0.42
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCATT
Found at i:15793 original size:6 final size:6
Alignment explanation
Indices: 15782--15808 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
15772 GACACGTATT
15782 ACCACG ACCACG ACCACG ACCACG ACC
1 ACCACG ACCACG ACCACG ACCACG ACC
15809 TGACCCGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.52, G:0.15, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:16377 original size:6 final size:6
Alignment explanation
Indices: 16361--16405 Score: 83
Period size: 6 Copynumber: 7.7 Consensus size: 6
16351 TCTCGTCTCG
16361 GGTCG- GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTC
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTC
16406 ATGCACATCC
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
5 5 0.13
6 34 0.87
ACGTcount: A:0.00, C:0.18, G:0.51, T:0.31
Consensus pattern (6 bp):
GGTCGT
Found at i:16510 original size:19 final size:22
Alignment explanation
Indices: 16469--16543 Score: 93
Period size: 22 Copynumber: 3.5 Consensus size: 22
16459 TCTTTTTTTA
*
16469 ACTATCGCAACGACAACCGTAG
1 ACTATCGCAACGACAACTGTAG
*
16491 ACTATCGCAAC-A-AA-TTTAG
1 ACTATCGCAACGACAACTGTAG
**
16510 AAAATCGCAACGACAACTGTAG
1 ACTATCGCAACGACAACTGTAG
16532 ACTATCGCAACG
1 ACTATCGCAACG
16544 CGATTTTCAA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
19 12 0.28
20 3 0.07
21 3 0.07
22 25 0.58
ACGTcount: A:0.40, C:0.27, G:0.16, T:0.17
Consensus pattern (22 bp):
ACTATCGCAACGACAACTGTAG
Found at i:17163 original size:12 final size:12
Alignment explanation
Indices: 17146--17174 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
17136 GAAACTAGGC
17146 ATGCTAAATTAT
1 ATGCTAAATTAT
17158 ATGCTAAATTAT
1 ATGCTAAATTAT
17170 ATGCT
1 ATGCT
17175 TCGAGATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (12 bp):
ATGCTAAATTAT
Found at i:17926 original size:21 final size:21
Alignment explanation
Indices: 17900--17943 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
17890 ATTTCTGGGT
* *
17900 AAGGGGAATCGGTACCCATTC
1 AAGGGGAACCGATACCCATTC
*
17921 AAGGGGAACCGATACCCCTTC
1 AAGGGGAACCGATACCCATTC
17942 AA
1 AA
17944 ACGACAGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.27, G:0.25, T:0.16
Consensus pattern (21 bp):
AAGGGGAACCGATACCCATTC
Found at i:18491 original size:23 final size:24
Alignment explanation
Indices: 18448--18494 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
18438 ATATGGCCTG
*
18448 TGATATGAAAGTGTATATGTGAAA
1 TGATATGAAAGTATATATGTGAAA
18472 TGATATGAAA-TATATATGTGAAA
1 TGATATGAAAGTATATATGTGAAA
18495 ACAAGTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (24 bp):
TGATATGAAAGTATATATGTGAAA
Found at i:18710 original size:31 final size:31
Alignment explanation
Indices: 18672--18827 Score: 251
Period size: 31 Copynumber: 5.0 Consensus size: 31
18662 AGGGTCGAAG
18672 GTTTACCTATGTTCTTCGGAACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
18703 GTTTACCTATGTTCTTCGGAACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
18734 GTTTACCTATGTTCTTCGGAACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
* * *
18765 GTTTACCTATGTCCTTTGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
* *
18796 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGAA-CATATGGACT
18827 G
1 G
18828 GTCCTTCGGG
Statistics
Matches: 116, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
31 115 0.99
32 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGAACATATGGACT
Found at i:21819 original size:21 final size:21
Alignment explanation
Indices: 21793--21836 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
21783 ATTTCTGGGT
* *
21793 AAGGGGAATCGGTACCCATTC
1 AAGGGGAACCGATACCCATTC
*
21814 AAGGGGAACCGATACCCCTTC
1 AAGGGGAACCGATACCCATTC
21835 AA
1 AA
21837 ACGACAGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.27, G:0.25, T:0.16
Consensus pattern (21 bp):
AAGGGGAACCGATACCCATTC
Found at i:22393 original size:23 final size:24
Alignment explanation
Indices: 22350--22396 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
22340 ATATGGCCTG
*
22350 TGATATGAAAGTGTATATGTGAAA
1 TGATATGAAAGTATATATGTGAAA
22374 TGATATGAAA-TATATATGTGAAA
1 TGATATGAAAGTATATATGTGAAA
22397 ACAAGTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (24 bp):
TGATATGAAAGTATATATGTGAAA
Found at i:22612 original size:31 final size:31
Alignment explanation
Indices: 22574--22729 Score: 260
Period size: 31 Copynumber: 5.0 Consensus size: 31
22564 AGGGTCGAGG
22574 GTTTACCTATGTTCTTCGGAACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
22605 GTTTACCTATGTTCTTCGGAACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
22636 GTTTACCTATGTTCTTCGGAACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
* *
22667 GTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATATGGACT
* *
22698 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGAA-CATATGGACT
22729 G
1 G
22730 GTCCTTCGGG
Statistics
Matches: 118, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
31 117 0.99
32 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.37
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGAACATATGGACT
Found at i:23775 original size:23 final size:23
Alignment explanation
Indices: 23749--23793 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
23739 TAGTCACAAT
*
23749 AATATTTTACTAATAGTAATAAA
1 AATAATTTACTAATAGTAATAAA
*
23772 AATAATTTACTGATAGTAATAA
1 AATAATTTACTAATAGTAATAA
23794 GATCCATATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.38
Consensus pattern (23 bp):
AATAATTTACTAATAGTAATAAA
Found at i:26890 original size:2 final size:2
Alignment explanation
Indices: 26883--26912 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
26873 TAAATTGTTA
*
26883 AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26913 TAAAGAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:29588 original size:31 final size:31
Alignment explanation
Indices: 29525--29594 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
29515 AAATAAGAAC
* * *
29525 TCAAATTATTCTTCTTATTATAGAGGTCGGT
1 TCAAATTATTCTTCTTATTACAAAGATCGGT
* *
29556 TCAAATTATTCTTCTTATTCCAAAGATTGGT
1 TCAAATTATTCTTCTTATTACAAAGATCGGT
29587 TCAAATTA
1 TCAAATTA
29595 ATCCCTATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.30, C:0.14, G:0.11, T:0.44
Consensus pattern (31 bp):
TCAAATTATTCTTCTTATTACAAAGATCGGT
Found at i:31765 original size:18 final size:17
Alignment explanation
Indices: 31733--31766 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
31723 CTTCCATAAA
*
31733 AAATAATATAAAAATTT
1 AAATAATAAAAAAATTT
31750 AAATATATAAAAAAATT
1 AAATA-ATAAAAAAATT
31767 ATTAGAGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AAATAATAAAAAAATTT
Found at i:36037 original size:20 final size:20
Alignment explanation
Indices: 36011--36066 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
36001 AAAACCTCTC
36011 CCAGTCTCGAGACCAATATG
1 CCAGTCTCGAGACCAATATG
* *
36031 TCAGTCTCGAGACCAGTATG
1 CCAGTCTCGAGACCAATATG
*
36051 CCAGTCTCGAAACCAA
1 CCAGTCTCGAGACCAA
36067 AATCCCAGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (20 bp):
CCAGTCTCGAGACCAATATG
Found at i:36074 original size:20 final size:20
Alignment explanation
Indices: 36009--36074 Score: 78
Period size: 20 Copynumber: 3.3 Consensus size: 20
35999 CCAAAACCTC
36009 TCCCAGTCTCGAGACCAATA
1 TCCCAGTCTCGAGACCAATA
** *
36029 TGTCAGTCTCGAGACCAGTA
1 TCCCAGTCTCGAGACCAATA
* * *
36049 TGCCAGTCTCGAAACCAAAA
1 TCCCAGTCTCGAGACCAATA
36069 TCCCAG
1 TCCCAG
36075 AAGGCTTTAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.20
Consensus pattern (20 bp):
TCCCAGTCTCGAGACCAATA
Found at i:36497 original size:103 final size:103
Alignment explanation
Indices: 36318--36522 Score: 392
Period size: 103 Copynumber: 2.0 Consensus size: 103
36308 ATGTTAGAAG
*
36318 ACATAAAAGGGACCAAGATTCAAATGGAGAATAACAAGAAAGTCAATTGCAAGATCAAAGCAACA
1 ACATAAAAGGGACCAAGATTCAAATGGAGAATAACAAGAAAGTCAATTGCAAGATCAAACCAACA
*
36383 TCAATAGAGTTTTAGAGCAAAAATTGTCAAATTCTTTT
66 TCAATAGAGTTTTAGAACAAAAATTGTCAAATTCTTTT
36421 ACATAAAAGGGACCAAGATTCAAATGGAGAATAACAAGAAAGTCAATTGCAAGATCAAACCAACA
1 ACATAAAAGGGACCAAGATTCAAATGGAGAATAACAAGAAAGTCAATTGCAAGATCAAACCAACA
36486 TCAATAGAGTTTTAGAACAAAAATTGTCAAATTCTTT
66 TCAATAGAGTTTTAGAACAAAAATTGTCAAATTCTTT
36523 GTAACACACT
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 100 1.00
ACGTcount: A:0.47, C:0.14, G:0.16, T:0.23
Consensus pattern (103 bp):
ACATAAAAGGGACCAAGATTCAAATGGAGAATAACAAGAAAGTCAATTGCAAGATCAAACCAACA
TCAATAGAGTTTTAGAACAAAAATTGTCAAATTCTTTT
Found at i:39128 original size:29 final size:29
Alignment explanation
Indices: 39096--39187 Score: 96
Period size: 29 Copynumber: 3.1 Consensus size: 29
39086 TAATGGTTTA
* *
39096 TAAATTTTAAAACATTTTATATTAATTCT
1 TAAATTTTAGAACATTTTATATTAATCCT
* * * *
39125 TAAATTAT-GATCTTATTTTAAATTAGTCCT
1 TAAATTTTAGAAC--ATTTTATATTAATCCT
*
39155 TAAATTTTAGAATATTTTATATTAATCCT
1 TAAATTTTAGAACATTTTATATTAATCCT
39184 TAAA
1 TAAA
39188 GTATCAGTAT
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
28 2 0.04
29 25 0.51
30 20 0.41
31 2 0.04
ACGTcount: A:0.39, C:0.08, G:0.03, T:0.50
Consensus pattern (29 bp):
TAAATTTTAGAACATTTTATATTAATCCT
Found at i:39144 original size:30 final size:29
Alignment explanation
Indices: 39109--39187 Score: 88
Period size: 30 Copynumber: 2.7 Consensus size: 29
39099 ATTTTAAAAC
* *
39109 ATTTTATATTAATTCTTAAATTAT-GATCTT
1 ATTTTATATTAATCCTTAAATTATAGA--AT
* * *
39139 ATTTTAAATTAGTCCTTAAATTTTAGAAT
1 ATTTTATATTAATCCTTAAATTATAGAAT
39168 ATTTTATATTAATCCTTAAA
1 ATTTTATATTAATCCTTAAA
39188 GTATCAGTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 19 0.46
30 20 0.49
31 2 0.05
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.52
Consensus pattern (29 bp):
ATTTTATATTAATCCTTAAATTATAGAAT
Found at i:39518 original size:60 final size:60
Alignment explanation
Indices: 39398--39519 Score: 138
Period size: 60 Copynumber: 2.0 Consensus size: 60
39388 GTAATCAAAA
* * * * * *
39398 TAGAATGATAATAATAGTTTGAGAATTGATACAAAATGTTTTAAAATTTATGGACAAATT
1 TAGAATGAGAATAATAATTTAAGAATTAATACAAAATATTTTAAAATTTAAGGACAAATT
* * * *
39458 TAGAATGAGAATAATAATTTAAGGATTAATATATAATATTTTAAAGTTTAAGGATC-AATT
1 TAGAATGAGAATAATAATTTAAGAATTAATACAAAATATTTTAAAATTTAAGGA-CAAATT
39518 TA
1 TA
39520 AAACAAATAT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
60 50 0.98
61 1 0.02
ACGTcount: A:0.46, C:0.02, G:0.14, T:0.38
Consensus pattern (60 bp):
TAGAATGAGAATAATAATTTAAGAATTAATACAAAATATTTTAAAATTTAAGGACAAATT
Found at i:46292 original size:23 final size:21
Alignment explanation
Indices: 46250--46296 Score: 51
Period size: 22 Copynumber: 2.1 Consensus size: 21
46240 GTAATTTTTT
*
46250 AATTTTTAAAGAAATAAAAATA
1 AATTTTCAAAGAAATAAAAA-A
46272 AATTTTCAACAGAAA-ACAAAAA
1 AATTTTCAA-AGAAATA-AAAAA
46294 AAT
1 AAT
46297 ATATAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.64, C:0.06, G:0.04, T:0.26
Consensus pattern (21 bp):
AATTTTCAAAGAAATAAAAAA
Found at i:46306 original size:10 final size:10
Alignment explanation
Indices: 46291--46325 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
46281 CAGAAAACAA
46291 AAAAATATAT
1 AAAAATATAT
46301 AAAAATATAT
1 AAAAATATAT
* *
46311 AAAAAAAAAT
1 AAAAATATAT
46321 AAAAA
1 AAAAA
46326 AATTTAGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAAATATAT
Found at i:46310 original size:12 final size:11
Alignment explanation
Indices: 46289--46327 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
46279 AACAGAAAAC
46289 AAAAAAATATA
1 AAAAAAATATA
*
46300 TAAAAATATATA
1 -AAAAAAATATA
46312 AAAAAAA-ATA
1 AAAAAAATATA
46322 AAAAAA
1 AAAAAA
46328 TTTAGAAGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 9 0.36
11 6 0.24
12 10 0.40
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (11 bp):
AAAAAAATATA
Found at i:51995 original size:2 final size:2
Alignment explanation
Indices: 51988--52022 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
51978 TTATAGATTG
51988 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
52023 TAGTTGAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:52402 original size:2 final size:2
Alignment explanation
Indices: 52397--52459 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
52387 GTTGTGTGTG
52397 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
52439 TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
52460 GCCGTCGATA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:53137 original size:22 final size:21
Alignment explanation
Indices: 53109--53167 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 21
53099 AGTTTCATAA
53109 TATAATATTTTTATTCAATTAT
1 TATAATATTTTT-TTCAATTAT
*
53131 TATAATATTGATTTTCAATTAT
1 TATAATATT-TTTTTCAATTAT
53153 TATTTAATATTTTTT
1 TA--TAATATTTTTT
53168 ATAACTGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 20 0.62
23 5 0.16
24 7 0.22
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (21 bp):
TATAATATTTTTTTCAATTAT
Found at i:56295 original size:30 final size:30
Alignment explanation
Indices: 56261--56321 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
56251 AAATCGTTTG
56261 GAAAATCTTAAAATTAC-TTTAACTTAATTT
1 GAAAATCTTAAAA-TACATTTAACTTAATTT
*
56291 GAAAATCTTAAAATCCATTTAACTTAATTT
1 GAAAATCTTAAAATACATTTAACTTAATTT
56321 G
1 G
56322 TTATATCGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.43, C:0.11, G:0.05, T:0.41
Consensus pattern (30 bp):
GAAAATCTTAAAATACATTTAACTTAATTT
Found at i:58821 original size:21 final size:22
Alignment explanation
Indices: 58738--58822 Score: 70
Period size: 21 Copynumber: 3.9 Consensus size: 22
58728 CAGAACCCCA
*
58738 GGGGGGGTATCGATTCCC-C-T
1 GGGGGGGAATCGATTCCCTCAT
*
58758 GTGGGGGGAATCGGTTCCCCTTCA-
1 G-GGGGGGAATCGATT-CCC-TCAT
** *
58782 AAGGGGGAATCGGTTCCCTCAT
1 GGGGGGGAATCGATTCCCTCAT
58804 GGGGGGG-ATCGATTCCCTC
1 GGGGGGGAATCGATTCCCTC
58823 TGCACCAAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
20 1 0.02
21 26 0.50
22 11 0.21
23 13 0.25
24 1 0.02
ACGTcount: A:0.14, C:0.25, G:0.38, T:0.24
Consensus pattern (22 bp):
GGGGGGGAATCGATTCCCTCAT
Found at i:62416 original size:22 final size:21
Alignment explanation
Indices: 62374--62413 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
62364 GAGTTTGTTT
*
62374 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
62395 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
62414 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:64643 original size:30 final size:30
Alignment explanation
Indices: 64609--64669 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
64599 AAATCGTTTG
64609 GAAAATCTTAAAATTAC-TTTAACTTAATTT
1 GAAAATCTTAAAA-TACATTTAACTTAATTT
*
64639 GAAAATCTTAAAATCCATTTAACTTAATTT
1 GAAAATCTTAAAATACATTTAACTTAATTT
64669 G
1 G
64670 TTATATCGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.43, C:0.11, G:0.05, T:0.41
Consensus pattern (30 bp):
GAAAATCTTAAAATACATTTAACTTAATTT
Found at i:67176 original size:19 final size:18
Alignment explanation
Indices: 67153--67199 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 18
67143 GGGTTTTGGT
67153 AAAAAGATATTTAAATAA
1 AAAAAGATATTTAAATAA
*
67171 ATAAAAGAAATTTAAATAA
1 A-AAAAGATATTTAAATAA
67190 AAATAAGATA
1 AAA-AAGATA
67200 ATATTGTGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 3 0.12
19 22 0.88
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (18 bp):
AAAAAGATATTTAAATAA
Found at i:70230 original size:17 final size:17
Alignment explanation
Indices: 70204--70247 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
70194 AATATTATTA
*
70204 AAAATATTATAAAATGT
1 AAAATTTTATAAAATGT
**
70221 AAAATTTTATTGAATGT
1 AAAATTTTATAAAATGT
70238 AAAATTTTAT
1 AAAATTTTAT
70248 TGAATGTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (17 bp):
AAAATTTTATAAAATGT
Found at i:70248 original size:17 final size:17
Alignment explanation
Indices: 70216--70256 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
70206 AATATTATAA
70216 AATGTAAAATTTTATTG
1 AATGTAAAATTTTATTG
70233 AATGTAAAATTTTATTG
1 AATGTAAAATTTTATTG
70250 AATGTAA
1 AATGTAA
70257 TCTAAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (17 bp):
AATGTAAAATTTTATTG
Found at i:76229 original size:21 final size:21
Alignment explanation
Indices: 76187--76229 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
76177 TTTCTGGGCT
* * *
76187 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCACTCA
*
76208 AGGGGAACCGATACCCCCTCA
1 AGGGGAACCGATACCCACTCA
76229 A
1 A
76230 CGAATATGAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.14
Consensus pattern (21 bp):
AGGGGAACCGATACCCACTCA
Found at i:76946 original size:23 final size:23
Alignment explanation
Indices: 76902--76946 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
76892 ATCATTATAT
*
76902 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
* *
76925 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
76947 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:83014 original size:21 final size:21
Alignment explanation
Indices: 82972--83014 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
82962 TTTCTGGGCT
* * *
82972 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCACTCA
*
82993 AGGGGAACCGATACCCCCTCA
1 AGGGGAACCGATACCCACTCA
83014 A
1 A
83015 CGAATATAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.14
Consensus pattern (21 bp):
AGGGGAACCGATACCCACTCA
Found at i:83066 original size:20 final size:20
Alignment explanation
Indices: 83041--83078 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
83031 GAATGCTAGA
*
83041 GGGGAATCGATACCCCCAGG
1 GGGGAACCGATACCCCCAGG
*
83061 GGGGAACCGATTCCCCCA
1 GGGGAACCGATACCCCCA
83079 TGTATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.34, G:0.32, T:0.11
Consensus pattern (20 bp):
GGGGAACCGATACCCCCAGG
Found at i:83734 original size:23 final size:23
Alignment explanation
Indices: 83690--83734 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
83680 ATCATTATAT
*
83690 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
* *
83713 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
83735 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:93372 original size:24 final size:24
Alignment explanation
Indices: 93332--93385 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
93322 TCGTTTAGTA
93332 TTTAAATTATAAATTTTGGTATAT
1 TTTAAATTATAAATTTTGGTATAT
* **
93356 TTTAATATT-TAATTTTTTTTATAT
1 TTTAA-ATTATAAATTTTGGTATAT
93380 TTTAAA
1 TTTAAA
93386 AAGATATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 1 0.04
24 22 0.85
25 3 0.12
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (24 bp):
TTTAAATTATAAATTTTGGTATAT
Found at i:94093 original size:21 final size:21
Alignment explanation
Indices: 94077--94120 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
94067 AAATTTGGTG
94077 TTTAGGGTTTAAT-ATTTAAGT
1 TTTAGGG-TTAATGATTTAAGT
94098 TTTAGGGTTAATGATTTAAGT
1 TTTAGGGTTAATGATTTAAGT
94119 TT
1 TT
94121 GAGGTGTGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.52
Consensus pattern (21 bp):
TTTAGGGTTAATGATTTAAGT
Found at i:99059 original size:3 final size:3
Alignment explanation
Indices: 99053--99119 Score: 75
Period size: 3 Copynumber: 23.0 Consensus size: 3
99043 TATTTATTAT
* * * *
99053 TAA TAA TAA AAA T-A TAA TAA TAA TAA TAA TAT TTA TAA TAA TTA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
99100 TAA TAA -AA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA
99120 AAACGAGACA
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
2 4 0.08
3 48 0.92
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:100300 original size:19 final size:18
Alignment explanation
Indices: 100264--100302 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
100254 TACTTAAAGT
*
100264 TAATTATACAAAATATTA
1 TAATTATACAAAAAATTA
*
100282 TAATTAATATAAAAAATTA
1 TAATT-ATACAAAAAATTA
100301 TA
1 TA
100303 TATTCAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (18 bp):
TAATTATACAAAAAATTA
Found at i:101289 original size:19 final size:19
Alignment explanation
Indices: 101265--101312 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
101255 ATTAAATGAA
*
101265 CATCGATGCATAGGGAGTG
1 CATCGATGCATAAGGAGTG
101284 CATCGATGCATAAGGAGTG
1 CATCGATGCATAAGGAGTG
101303 CATCGATGCA
1 CATCGATGCA
101313 CCTGCTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.21
Consensus pattern (19 bp):
CATCGATGCATAAGGAGTG
Found at i:101948 original size:18 final size:18
Alignment explanation
Indices: 101925--101977 Score: 97
Period size: 18 Copynumber: 2.9 Consensus size: 18
101915 AGGGATTATC
101925 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
101943 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
*
101961 AATGGTCCTTCGGGACA
1 AGTGGTCCTTCGGGACA
101978 AATATTCAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.19, C:0.23, G:0.32, T:0.26
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:106337 original size:21 final size:21
Alignment explanation
Indices: 106307--106361 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
106297 GATTTACATA
*
106307 TTCGCATTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
*
106328 TTCGCGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
106349 TTCGCGTTGCGAT
1 TTCGCGTTGCGAT
106362 TTATTCCAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.18, C:0.22, G:0.29, T:0.31
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTCCAAG
Found at i:106377 original size:21 final size:21
Alignment explanation
Indices: 106353--106541 Score: 197
Period size: 21 Copynumber: 9.0 Consensus size: 21
106343 TCGAAGTTCG
106353 CGTTGCGATTTATTCCAAATT
1 CGTTGCGATTTATTCCAAATT
*
106374 CGTTACGATTTATTCCAAATT
1 CGTTGCGATTTATTCCAAATT
*
106395 CGTTACGATTTATTCCAAATT
1 CGTTGCGATTTATTCCAAATT
* *
106416 CATTGCGATTTATTCTAAATT
1 CGTTGCGATTTATTCCAAATT
* *
106437 CGTTGCGA--TAGTCCAAGTT
1 CGTTGCGATTTATTCCAAATT
* *
106456 CGCGTTGAGATTTATTCCAAGTT
1 --CGTTGCGATTTATTCCAAATT
* ** *
106479 CGTTGCGA--TAGTAGAAGTT
1 CGTTGCGATTTATTCCAAATT
106498 CGCGTTGCGATTTATTCCAAATT
1 --CGTTGCGATTTATTCCAAATT
*
106521 CGTTGCGATTTAGTCCAAATT
1 CGTTGCGATTTATTCCAAATT
106542 TATTCCAAAT
Statistics
Matches: 141, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
19 16 0.11
21 108 0.77
23 17 0.12
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.40
Consensus pattern (21 bp):
CGTTGCGATTTATTCCAAATT
Found at i:106405 original size:42 final size:43
Alignment explanation
Indices: 106353--106666 Score: 233
Period size: 42 Copynumber: 7.7 Consensus size: 43
106343 TCGAAGTTCG
*
106353 CGTTGCGATTTATTCCAAATT-CGTTACGATTTATTCCAAATT
1 CGTTGCGATTTAGTCCAAATTCCGTTACGATTTATTCCAAATT
* * * * *
106395 CGTTACGATTTATTCCAAATT-CATTGCGATTTATTCTAAATT
1 CGTTGCGATTTAGTCCAAATTCCGTTACGATTTATTCCAAATT
* *
106437 CGTTGCGA--TAGTCCAAGTTCGCGTTGA-GATTTATTCCAAGTT
1 CGTTGCGATTTAGTCCAAATTC-CGTT-ACGATTTATTCCAAATT
** * *
106479 CGTTGCGA--TAGTAGAAGTTCGCGTTGCGATTTATTCCAAATT
1 CGTTGCGATTTAGTCCAAATTC-CGTTACGATTTATTCCAAATT
106521 CGTTGCGATTTAGTCC--A-------A--ATTTATTCCAAATT
1 CGTTGCGATTTAGTCCAAATTCCGTTACGATTTATTCCAAATT
* * *
106553 CGTTGCGA-T-AGTCCAAGTTCACGTTGCGATTTATTCCAAGTT
1 CGTTGCGATTTAGTCCAAATTC-CGTTACGATTTATTCCAAATT
* * * *
106595 CGTTGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCTAAATT
1 CGTTGCGATTTAGTCCAAATTC-CGTTACGATTTATTCCAAATT
* *
106637 CGTTGCGATTTATTCCAAATT-CGTTGCGAT
1 CGTTGCGATTTAGTCCAAATTCCGTTACGAT
106667 AGTCGAAGTT
Statistics
Matches: 222, Mismatches: 29, Indels: 42
0.76 0.10 0.14
Matches are distributed among these distances:
30 5 0.02
31 1 0.00
32 22 0.10
40 9 0.04
42 173 0.78
44 12 0.05
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (43 bp):
CGTTGCGATTTAGTCCAAATTCCGTTACGATTTATTCCAAATT
Found at i:106428 original size:63 final size:63
Alignment explanation
Indices: 106355--106700 Score: 203
Period size: 63 Copynumber: 5.7 Consensus size: 63
106345 GAAGTTCGCG
*
106355 TTGCGATTTATTCCAAATTCGTTACGATTTATTCCAAATTCGTTACGATTTATTCCAAATTCA
1 TTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCGTTACGATTTATTCCAAATTCA
* * * *
106418 TTGCGATTTATTCTAAATTCGTTGCGA--TAGTCCAAGTTCGCGTTGA-GATTTATTCCAAGTTC
1 TTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATT--CGTT-ACGATTTATTCCAAATTC
*
106480 G
63 A
* ** * * *
106481 TTGCGA--TAGTAGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATTTAGTCC--A---A
1 TTGCGATTTATTCCAAATT--CGTTGCGATTTATTCCAAATTCGTTACGATTTATTCCAAATTCA
* * * * *
106539 -----ATTTATTCCAAATTCGTTGCGA--TAGTCCAAGTTCACGTTGCGATTTATTCCAAGTTCG
1 TTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATT--CGTTACGATTTATTCCAAATTCA
* * * * * *
106597 TTGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCTAAATTCGTTGCGATTTATTCCAAATTCG
1 TTGCGATTTATTCCAAATT--CGTTGCGATTTATTCCAAATTCGTTACGATTTATTCCAAATTCA
* * * *
106660 TTGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCTAAATTC
1 TTGCGATTTATTCCAAATT--CGTTGCGATTTATTCCAAATTC
106701 TTTGCGATAG
Statistics
Matches: 225, Mismatches: 32, Indels: 52
0.73 0.10 0.17
Matches are distributed among these distances:
51 9 0.04
53 24 0.11
55 7 0.03
61 24 0.11
63 143 0.64
64 1 0.00
65 17 0.08
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (63 bp):
TTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAATTCGTTACGATTTATTCCAAATTCA
Found at i:106548 original size:32 final size:30
Alignment explanation
Indices: 106507--106568 Score: 106
Period size: 32 Copynumber: 2.0 Consensus size: 30
106497 TCGCGTTGCG
106507 ATTTATTCCAAATTCGTTGCGATTTAGTCCAA
1 ATTTATTCCAAATTCGTTGCGA--TAGTCCAA
106539 ATTTATTCCAAATTCGTTGCGATAGTCCAA
1 ATTTATTCCAAATTCGTTGCGATAGTCCAA
106569 GTTCACGTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 8 0.27
32 22 0.73
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (30 bp):
ATTTATTCCAAATTCGTTGCGATAGTCCAA
Found at i:106586 original size:74 final size:74
Alignment explanation
Indices: 106465--106603 Score: 233
Period size: 74 Copynumber: 1.9 Consensus size: 74
106455 TCGCGTTGAG
* * *
106465 ATTTATTCCAAGTTCGTTGCGATAGTAGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGAT
1 ATTTATTCCAAATTCGTTGCGATAGTACAAGTTCACGTTGCGATTTATTCCAAATTCGTTGCGAT
106530 TTAGTCCAA
66 TTAGTCCAA
* *
106539 ATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATTTATTCCAAGTTCGTTGCGAT
1 ATTTATTCCAAATTCGTTGCGATAGTACAAGTTCACGTTGCGATTTATTCCAAATTCGTTGCGAT
106604 AGTCGAAGTT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 60 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (74 bp):
ATTTATTCCAAATTCGTTGCGATAGTACAAGTTCACGTTGCGATTTATTCCAAATTCGTTGCGAT
TTAGTCCAA
Found at i:106627 original size:116 final size:116
Alignment explanation
Indices: 106423--106657 Score: 416
Period size: 116 Copynumber: 2.0 Consensus size: 116
106413 ATTCATTGCG
* *
106423 ATTTATTCTAAATTCGTTGCGATAGTCCAAGTTCGCGTTGAGATTTATTCCAAGTTCGTTGCGAT
1 ATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGAGATTTATTCCAAGTTCGTTGCGAT
106488 AGTAGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATTTAGTCCAA
66 AGTAGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATTTAGTCCAA
*
106539 ATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATTTATTCCAAGTTCGTTGCGAT
1 ATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGAGATTTATTCCAAGTTCGTTGCGAT
* * *
106604 AGTCGAAGTTCGCGTTGCGATTTATTCTAAATTCGTTGCGATTTATTCCAA
66 AGTAGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATTTAGTCCAA
106655 ATT
1 ATT
106658 CGTTGCGATA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 113 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.39
Consensus pattern (116 bp):
ATTTATTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGAGATTTATTCCAAGTTCGTTGCGAT
AGTAGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATTTAGTCCAA
Found at i:106705 original size:21 final size:21
Alignment explanation
Indices: 106539--106708 Score: 118
Period size: 21 Copynumber: 8.1 Consensus size: 21
106529 TTTAGTCCAA
*
106539 ATTTATTCCAAATTCGTTGCG
1 ATTTATTCTAAATTCGTTGCG
* * *
106560 A--TAGTCCAAGTTCACGTTGCG
1 ATTTATTCTAAATT--CGTTGCG
* *
106581 ATTTATTCCAAGTTCGTTGCG
1 ATTTATTCTAAATTCGTTGCG
* * *
106602 A--TAGTCGAAGTTCGCGTTGCG
1 ATTTATTCTAAATT--CGTTGCG
106623 ATTTATTCTAAATTCGTTGCG
1 ATTTATTCTAAATTCGTTGCG
*
106644 ATTTATTCCAAATTCGTTGCG
1 ATTTATTCTAAATTCGTTGCG
* * *
106665 A--TAGTCGAAGTTCGCGTTGCG
1 ATTTATTCTAAATT--CGTTGCG
*
106686 ATTTATTCTAAATTCTTTGCG
1 ATTTATTCTAAATTCGTTGCG
106707 AT
1 AT
106709 AGTCCAAAAT
Statistics
Matches: 121, Mismatches: 16, Indels: 24
0.75 0.10 0.15
Matches are distributed among these distances:
19 26 0.21
21 69 0.57
23 26 0.21
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.39
Consensus pattern (21 bp):
ATTTATTCTAAATTCGTTGCG
Found at i:106706 original size:63 final size:63
Alignment explanation
Indices: 106574--106708 Score: 252
Period size: 63 Copynumber: 2.1 Consensus size: 63
106564 TCCAAGTTCA
*
106574 CGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCTAAATT
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCTAAATT
106637 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCTAAATT
1 CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCTAAATT
*
106700 CTTTGCGAT
1 CGTTGCGAT
106709 AGTCCAAAAT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 70 1.00
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.40
Consensus pattern (63 bp):
CGTTGCGATTTATTCCAAATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCTAAATT
Found at i:108882 original size:31 final size:29
Alignment explanation
Indices: 108835--108909 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 29
108825 CGTTAAAATT
* *
108835 TTTAAAATTTATATATTGAAATATGTCAAAA
1 TTTATAATTTAAATATT-AAATATGT-AAAA
* *
108866 TTTATAATTTAAATATTAAATGTGTTAAA
1 TTTATAATTTAAATATTAAATATGTAAAA
*
108895 TTTTTAAATTTAAAT
1 TTTAT-AATTTAAAT
108910 GAAAAAATTA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
29 7 0.18
30 16 0.42
31 15 0.39
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.48
Consensus pattern (29 bp):
TTTATAATTTAAATATTAAATATGTAAAA
Found at i:108988 original size:47 final size:47
Alignment explanation
Indices: 108879--108969 Score: 148
Period size: 47 Copynumber: 1.9 Consensus size: 47
108869 ATAATTTAAA
*
108879 TATTAA-ATGTGTTAAATTTTTAAATTTAAATGAAAAAATTATATAAG
1 TATTAAGAT-TGTTAAATTTTTAAATTTAAATAAAAAAATTATATAAG
*
108926 TATTAAGCTTGTTAAATTTTTAAATTTAAATAAAAAAATTATAT
1 TATTAAGATTGTTAAATTTTTAAATTTAAATAAAAAAATTATAT
108970 GTTAGATATA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
47 40 0.98
48 1 0.02
ACGTcount: A:0.48, C:0.01, G:0.07, T:0.44
Consensus pattern (47 bp):
TATTAAGATTGTTAAATTTTTAAATTTAAATAAAAAAATTATATAAG
Found at i:110305 original size:14 final size:14
Alignment explanation
Indices: 110286--110312 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
110276 TAAAGAAAGA
110286 TATTATTATTTTAT
1 TATTATTATTTTAT
110300 TATTATTATTTTA
1 TATTATTATTTTA
110313 ATAAAATCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TATTATTATTTTAT
Found at i:113313 original size:18 final size:19
Alignment explanation
Indices: 113286--113326 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
113276 TTGTTAAAAA
113286 ATAA-AAAAATTTA-AATT
1 ATAATAAAAATTTACAATT
113303 ATAATAAAAATTTACAATT
1 ATAATAAAAATTTACAATT
113322 ATAAT
1 ATAAT
113327 GATTAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 4 0.18
18 9 0.41
19 9 0.41
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (19 bp):
ATAATAAAAATTTACAATT
Found at i:114271 original size:18 final size:18
Alignment explanation
Indices: 114248--114285 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
114238 ACGTATGCCC
114248 ACAGGGCATCGTTGAGCG
1 ACAGGGCATCGTTGAGCG
114266 ACAGGGCATCGTTGAGCG
1 ACAGGGCATCGTTGAGCG
114284 AC
1 AC
114286 TCCATATTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.37, T:0.16
Consensus pattern (18 bp):
ACAGGGCATCGTTGAGCG
Found at i:116110 original size:63 final size:63
Alignment explanation
Indices: 115994--116117 Score: 144
Period size: 63 Copynumber: 2.0 Consensus size: 63
115984 ACCTAAGGGA
* * * * * *
115994 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCGGGGCTGTAGGGCCTATCTAAGAAC
1 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
* *
116057 ACATCTTAGGGCC-GTAGGGCCTACCCGAGA-ATGATCTCAGGGCCGCAGAGCCTACCTAAGA
1 ACATCTTAGGGCCTG-AGAGCCTACCCAAGATA-GATCTCAGGGCCGCAGAGCCTACCTAAGA
116118 GTCACATTAG
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
62 2 0.04
63 49 0.96
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.19
Consensus pattern (63 bp):
ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
Found at i:120169 original size:79 final size:80
Alignment explanation
Indices: 120073--120230 Score: 214
Period size: 79 Copynumber: 2.0 Consensus size: 80
120063 GGAATTTGAT
* * *
120073 AGAGTTTTACTCTAACTAAAACT-TATTTAATATC-TAA-AAATAGATAATAATATTTTTTAAAT
1 AGAGTTTTACTCCAACTAAAACTCT-TTTAATATCAAAATAAATAGATAATAATATTGTTTAAAT
*
120135 TTATAATATTAAACCTG
65 ATA-AATATTAAACCTG
*
120152 AGAGTTTTACTCCAACTAAAACTCTTTTTATATCAAAATTTAAATAGATAATAATATTGTTTAAA
1 AGAGTTTTACTCCAACTAAAACTCTTTTAATATCAAAA--TAAATAGATAATAATATTGTTTAAA
120217 TATAAATATTAAAC
64 TATAAATATTAAAC
120231 ATATATTTCC
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
79 30 0.43
80 3 0.04
82 10 0.14
83 26 0.38
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (80 bp):
AGAGTTTTACTCCAACTAAAACTCTTTTAATATCAAAATAAATAGATAATAATATTGTTTAAATA
TAAATATTAAACCTG
Found at i:143169 original size:30 final size:31
Alignment explanation
Indices: 143128--143202 Score: 109
Period size: 30 Copynumber: 2.5 Consensus size: 31
143118 AACTTGGTCA
* *
143128 ATATATAAGATGCAATTTTCGAACAATATAT
1 ATATAAAAGATGCAATATTCGAACAATATAT
143159 -TA-AAAGAGATGCAATATTCGAACAATATAT
1 ATATAAA-AGATGCAATATTCGAACAATATAT
143189 ATATAAAAGATGCA
1 ATATAAAAGATGCA
143203 GTATATGTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
29 2 0.05
30 25 0.64
31 9 0.23
32 3 0.08
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.29
Consensus pattern (31 bp):
ATATAAAAGATGCAATATTCGAACAATATAT
Found at i:144965 original size:26 final size:26
Alignment explanation
Indices: 144929--144978 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
144919 AATCAACATG
* *
144929 AGTATTATGCAAAATTAGTATGAGCA
1 AGTATCATGCAAAATTAATATGAGCA
*
144955 AGTATCATGCATAATTAATATGAG
1 AGTATCATGCAAAATTAATATGAG
144979 TAAATATTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.42, C:0.08, G:0.18, T:0.32
Consensus pattern (26 bp):
AGTATCATGCAAAATTAATATGAGCA
Found at i:147946 original size:19 final size:19
Alignment explanation
Indices: 147922--147959 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
147912 AACTAGTCCA
147922 AAATCAATATTTTAATATT
1 AAATCAATATTTTAATATT
147941 AAATCAATATTTTAATATT
1 AAATCAATATTTTAATATT
147960 CGATTACAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (19 bp):
AAATCAATATTTTAATATT
Found at i:156470 original size:2 final size:2
Alignment explanation
Indices: 156459--156507 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
156449 GTTTAATTAA
156459 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
156500 AT AT AT AT
1 AT AT AT AT
156508 CAAAATTAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:156682 original size:31 final size:32
Alignment explanation
Indices: 156633--156696 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 32
156623 TTATAATTAT
156633 TTTAAATAATTAAATTTT-ATA-AAATATATA
1 TTTAAATAATTAAATTTTAATATAAATATATA
*
156663 TTTAAA-AATTAAGATTTTTAATATATATATATA
1 TTTAAATAATTAA-A-TTTTAATATAAATATATA
156696 T
1 T
156697 ATGTATTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 6 0.21
30 7 0.24
31 4 0.14
32 3 0.10
33 9 0.31
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (32 bp):
TTTAAATAATTAAATTTTAATATAAATATATA
Found at i:156688 original size:29 final size:30
Alignment explanation
Indices: 156633--156692 Score: 88
Period size: 29 Copynumber: 2.0 Consensus size: 30
156623 TTATAATTAT
156633 TTTAAATAATTAAATTTTATAAAATATATA
1 TTTAAATAATTAAATTTTATAAAATATATA
*
156663 TTTAAA-AATTAAGATTTT-TAATATATATA
1 TTTAAATAATTAA-ATTTTATAAAATATATA
156692 T
1 T
156693 ATATATGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 17 0.61
30 11 0.39
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (30 bp):
TTTAAATAATTAAATTTTATAAAATATATA
Found at i:173625 original size:20 final size:20
Alignment explanation
Indices: 173554--173644 Score: 73
Period size: 20 Copynumber: 4.7 Consensus size: 20
173544 CGCGAACTCC
* * *
173554 AATTTCGCAACTCAATTTCC
1 AATTTCGCAACACGATTTCT
* *
173574 AAATTCGCAACTCGATTTCT
1 AATTTCGCAACACGATTTCT
173594 GAA-TTCGCAACACGAATTT-T
1 -AATTTCGCAACACG-ATTTCT
*
173614 AATTTCGCAACA-GGTTT-T
1 AATTTCGCAACACGATTTCT
*
173632 AGTTTCGCAACAC
1 AATTTCGCAACAC
173645 ATGTTTTGGG
Statistics
Matches: 61, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
18 15 0.25
19 3 0.05
20 37 0.61
21 6 0.10
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (20 bp):
AATTTCGCAACACGATTTCT
Found at i:173798 original size:14 final size:15
Alignment explanation
Indices: 173779--173816 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
173769 TCTCCATCTC
173779 TAATTTTTTT-TACA
1 TAATTTTTTTCTACA
*
173793 TAATTTTATTTCTATA
1 TAATTTT-TTTCTACA
173809 TAATTTTT
1 TAATTTTT
173817 CAATGATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (15 bp):
TAATTTTTTTCTACA
Found at i:174431 original size:12 final size:12
Alignment explanation
Indices: 174410--174443 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
174400 ACCACATTTC
*
174410 CAATACCAAACA
1 CAATATCAAACA
174422 CAATATCAAACA
1 CAATATCAAACA
*
174434 CAATCTCAAA
1 CAATATCAAA
174444 ACCCACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:177179 original size:20 final size:20
Alignment explanation
Indices: 177156--177200 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
177146 GAAACGCGAA
177156 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAATTTGACT
*
177176 ATCGTAACGCGAATTTGACT
1 ATCGCAACGCGAATTTGACT
*
177196 TTCGC
1 ATCGC
177201 GTTGCGAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (20 bp):
ATCGCAACGCGAATTTGACT
Found at i:177369 original size:64 final size:64
Alignment explanation
Indices: 177267--177434 Score: 257
Period size: 64 Copynumber: 2.6 Consensus size: 64
177257 AATTTAAAAC
*
177267 AACAAATCAACTTTTACAGATCAATTAAACAA-ACAAAAAATAAGAATTATTTACACATCAATTA
1 AACAAATCAACTTTTACAAATCAATTAAACAAGA-AAAAAATAAGAATTATTTACACATCAATTA
*** * * *
177331 AACAAATCAACTTTTACAAATCAATTAAACAAGAAAAAAATAATTCTTATTTCCTCTTCAATTA
1 AACAAATCAACTTTTACAAATCAATTAAACAAGAAAAAAATAAGAATTATTTACACATCAATTA
177395 AACAAATCAACTTTTACAAATCAATTAAACAAGAAAAAAA
1 AACAAATCAACTTTTACAAATCAATTAAACAAGAAAAAAA
177435 AGTGTACCCC
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
64 95 0.99
65 1 0.01
ACGTcount: A:0.54, C:0.16, G:0.02, T:0.27
Consensus pattern (64 bp):
AACAAATCAACTTTTACAAATCAATTAAACAAGAAAAAAATAAGAATTATTTACACATCAATTA
Found at i:178798 original size:21 final size:21
Alignment explanation
Indices: 178772--178870 Score: 71
Period size: 21 Copynumber: 4.7 Consensus size: 21
178762 GTGAATCGGG
178772 CTCTTGAATGATGA-GAGGGAC
1 CTCTTGAATGATGACGAGGG-C
** *
178793 CTCTTGAACAATGACAAGGGC
1 CTCTTGAATGATGACGAGGGC
* *
178814 CTCTTGAACGGTTG--GAGGGGC
1 CTCTTGAA-TGATGACGA-GGGC
*
178835 CTCTTGAATGAT-AGGAGAGGC
1 CTCTTGAATGATGACGAG-GGC
*
178856 CTTTTGAATGATGAC
1 CTCTTGAATGATGAC
178871 ATGTGAATCA
Statistics
Matches: 60, Mismatches: 11, Indels: 13
0.71 0.13 0.15
Matches are distributed among these distances:
20 4 0.07
21 49 0.82
22 7 0.12
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.25
Consensus pattern (21 bp):
CTCTTGAATGATGACGAGGGC
Found at i:179241 original size:21 final size:21
Alignment explanation
Indices: 179186--179260 Score: 55
Period size: 21 Copynumber: 3.6 Consensus size: 21
179176 GTAAAGTAGA
*
179186 TACCTCACCACGTAAAGCACCA
1 TACCTCACCACGTAAAG-ACCC
** * *
179208 T-TGTCATCGCGTAAA-ACCTC
1 TACCTCACCACGTAAAGACC-C
*
179228 TACCTCACCACGTAAAGACCG
1 TACCTCACCACGTAAAGACCC
*
179249 TACCTCATCACG
1 TACCTCACCACG
179261 CCATGCACCA
Statistics
Matches: 39, Mismatches: 11, Indels: 7
0.68 0.19 0.12
Matches are distributed among these distances:
19 3 0.08
20 1 0.03
21 31 0.79
22 4 0.10
ACGTcount: A:0.31, C:0.37, G:0.12, T:0.20
Consensus pattern (21 bp):
TACCTCACCACGTAAAGACCC
Found at i:179301 original size:21 final size:21
Alignment explanation
Indices: 179277--179326 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
179267 ACCATTGTCG
*
179277 TCACGTAAAGTACTGACCTCC
1 TCACGTAAAGTACTGACCTCA
* *
179298 TCACGCAAAGTATTGACCTCA
1 TCACGTAAAGTACTGACCTCA
179319 TCACGTAA
1 TCACGTAA
179327 CTCCCCTAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (21 bp):
TCACGTAAAGTACTGACCTCA
Found at i:181047 original size:20 final size:20
Alignment explanation
Indices: 181000--181050 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
180990 AAACTTAAAT
*
181000 TCGCAACACGAAAATGAAAA
1 TCGCAACGCGAAAATGAAAA
181020 TCGCAACGCGAAAATGAAAA
1 TCGCAACGCGAAAATGAAAA
181040 TCGCAACGCGA
1 TCGCAACGCGA
181051 TTGTAGTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.47, C:0.24, G:0.20, T:0.10
Consensus pattern (20 bp):
TCGCAACGCGAAAATGAAAA
Found at i:181101 original size:20 final size:20
Alignment explanation
Indices: 181057--181132 Score: 100
Period size: 20 Copynumber: 3.9 Consensus size: 20
181047 GCGATTGTAG
* *
181057 TTTCGCGTTGTGATTTT-CA
1 TTTCGCGTTGCGATTTTCCT
181076 TTTCGCGTTGCGATTTTCCT
1 TTTCGCGTTGCGATTTTCCT
* *
181096 TTTCGCGTTGTGATTTTCAT
1 TTTCGCGTTGCGATTTTCCT
*
181116 TTTCGCATTGCGATTTT
1 TTTCGCGTTGCGATTTT
181133 AAGTTTTAGA
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
19 16 0.32
20 34 0.68
ACGTcount: A:0.09, C:0.18, G:0.20, T:0.53
Consensus pattern (20 bp):
TTTCGCGTTGCGATTTTCCT
Found at i:181101 original size:39 final size:40
Alignment explanation
Indices: 181057--181132 Score: 136
Period size: 39 Copynumber: 1.9 Consensus size: 40
181047 GCGATTGTAG
*
181057 TTTCGCGTTGTGATTTTCA-TTTCGCGTTGCGATTTTCCT
1 TTTCGCGTTGTGATTTTCATTTTCGCATTGCGATTTTCCT
181096 TTTCGCGTTGTGATTTTCATTTTCGCATTGCGATTTT
1 TTTCGCGTTGTGATTTTCATTTTCGCATTGCGATTTT
181133 AAGTTTTAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
39 19 0.54
40 16 0.46
ACGTcount: A:0.09, C:0.18, G:0.20, T:0.53
Consensus pattern (40 bp):
TTTCGCGTTGTGATTTTCATTTTCGCATTGCGATTTTCCT
Found at i:181503 original size:22 final size:22
Alignment explanation
Indices: 181473--181530 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
181463 GATGGAGATA
181473 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
* **
181495 GATGGATTTTTTCGGAGATGGG
1 GACGGATTTCGTCGGAGATGGG
*
181517 GACGGATGTCGTCG
1 GACGGATTTCGTCG
181531 TAAAGAGTGA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.17, C:0.12, G:0.43, T:0.28
Consensus pattern (22 bp):
GACGGATTTCGTCGGAGATGGG
Found at i:182167 original size:29 final size:28
Alignment explanation
Indices: 182094--182166 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
182084 AACTCCCCTG
* * *
182094 AAATTCAAGTTCGCCCCTGAAATTTTAA
1 AAATTCAAATTCGCCCCTAAAAATTTAA
*
182122 AAATTTAAATTCGCCCCTAAAAATTTAA
1 AAATTCAAATTCGCCCCTAAAAATTTAA
*
182150 AAATTCAAATTCACCCC
1 AAATTCAAATTCGCCCC
182167 CAAACATAGA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.30
Consensus pattern (28 bp):
AAATTCAAATTCGCCCCTAAAAATTTAA
Found at i:182690 original size:21 final size:21
Alignment explanation
Indices: 182666--182722 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
182656 CTACGGCGAC
*
182666 ATCCGTCCTATCTTCGACGAA
1 ATCCGTCCTATCTCCGACGAA
*
182687 ATCCGTCCTCATCTCCGGCGAA
1 ATCCGTCCT-ATCTCCGACGAA
182709 ATCCGT-CTATCTCC
1 ATCCGTCCTATCTCC
182723 ATCTCTCAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
20 6 0.18
21 11 0.33
22 16 0.48
ACGTcount: A:0.19, C:0.39, G:0.14, T:0.28
Consensus pattern (21 bp):
ATCCGTCCTATCTCCGACGAA
Found at i:182708 original size:22 final size:21
Alignment explanation
Indices: 182659--182722 Score: 85
Period size: 21 Copynumber: 3.0 Consensus size: 21
182649 TCACTCTCTA
* *
182659 CGGCGACATCCGTCCTATCTT
1 CGGCGAAATCCGTCCTATCTC
*
182680 CGACGAAATCCGTCCTCATCTC
1 CGGCGAAATCCGTCCT-ATCTC
182702 CGGCGAAATCCGT-CTATCTC
1 CGGCGAAATCCGTCCTATCTC
182722 C
1 C
182723 ATCTCTCAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 6 0.16
21 16 0.42
22 16 0.42
ACGTcount: A:0.19, C:0.39, G:0.17, T:0.25
Consensus pattern (21 bp):
CGGCGAAATCCGTCCTATCTC
Found at i:183946 original size:17 final size:17
Alignment explanation
Indices: 183924--183959 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
183914 AAGATTAATA
183924 GTAATCAGATTCAAAAG
1 GTAATCAGATTCAAAAG
183941 GTAATCAGATTCAAAAG
1 GTAATCAGATTCAAAAG
183958 GT
1 GT
183960 GGAGGTTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.44, C:0.11, G:0.19, T:0.25
Consensus pattern (17 bp):
GTAATCAGATTCAAAAG
Found at i:184738 original size:79 final size:79
Alignment explanation
Indices: 184606--184763 Score: 228
Period size: 79 Copynumber: 2.0 Consensus size: 79
184596 TAAACATTAA
* * * * *
184606 AAATGAACCTTGAATTGTAGGTTATTTTACATTTTATTACACTTTTTTCTTTCTTTTGGTATGTG
1 AAATGAAACTTGAATAGTAGGTTATTTTACATGTTATGACAATTTTTTCTTTCTTTTGGTATGTG
184671 TGGAGGTTCACTTG
66 TGGAGGTTCACTTG
* *
184685 AAATGAAACTTGAGTAGTAGGTT-TCTTTACATGTTATGACAATTTTTTTTTTCTTTTGGTATGT
1 AAATGAAACTTGAATAGTAGGTTAT-TTTACATGTTATGACAATTTTTTCTTTCTTTTGGTATGT
*
184749 TTGGAGGTTCACTTG
65 GTGGAGGTTCACTTG
184764 GTCAGGGGAA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
78 1 0.01
79 69 0.99
ACGTcount: A:0.22, C:0.10, G:0.19, T:0.49
Consensus pattern (79 bp):
AAATGAAACTTGAATAGTAGGTTATTTTACATGTTATGACAATTTTTTCTTTCTTTTGGTATGTG
TGGAGGTTCACTTG
Found at i:186522 original size:33 final size:33
Alignment explanation
Indices: 186475--186541 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
186465 AAATGAGAAA
186475 ATATTTACTAGAAAAAACCAAAGAATTAATCTC
1 ATATTTACTAGAAAAAACCAAAGAATTAATCTC
* *
186508 ATATTTACTGGAAAAAATCAAAGAATTAATCTC
1 ATATTTACTAGAAAAAACCAAAGAATTAATCTC
186541 A
1 A
186542 ACTTTTGATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.51, C:0.13, G:0.07, T:0.28
Consensus pattern (33 bp):
ATATTTACTAGAAAAAACCAAAGAATTAATCTC
Found at i:186660 original size:28 final size:28
Alignment explanation
Indices: 186620--186677 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
186610 TGAATGGCTT
186620 ATACATAATGTGACACATCAAGACACTA
1 ATACATAATGTGACACATCAAGACACTA
186648 ATACATAATGTGACACATCAAGACACTA
1 ATACATAATGTGACACATCAAGACACTA
186676 AT
1 AT
186678 GTGACTCTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.47, C:0.21, G:0.10, T:0.22
Consensus pattern (28 bp):
ATACATAATGTGACACATCAAGACACTA
Found at i:188576 original size:54 final size:54
Alignment explanation
Indices: 188512--188622 Score: 222
Period size: 54 Copynumber: 2.1 Consensus size: 54
188502 ATCCCATGAT
188512 TTGGGTTTTGATTACAAAAACCACTTCACAGTATTAATTTATCTTTATTATTAA
1 TTGGGTTTTGATTACAAAAACCACTTCACAGTATTAATTTATCTTTATTATTAA
188566 TTGGGTTTTGATTACAAAAACCACTTCACAGTATTAATTTATCTTTATTATTAA
1 TTGGGTTTTGATTACAAAAACCACTTCACAGTATTAATTTATCTTTATTATTAA
188620 TTG
1 TTG
188623 CTTTTCCCTC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (54 bp):
TTGGGTTTTGATTACAAAAACCACTTCACAGTATTAATTTATCTTTATTATTAA
Found at i:189303 original size:17 final size:17
Alignment explanation
Indices: 189281--189314 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
189271 CGTTTTCATT
189281 TTACATAATGAAAGTAA
1 TTACATAATGAAAGTAA
189298 TTACATAATGAAAGTAA
1 TTACATAATGAAAGTAA
189315 AGGCTTGTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.29
Consensus pattern (17 bp):
TTACATAATGAAAGTAA
Found at i:191860 original size:15 final size:15
Alignment explanation
Indices: 191837--191869 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
191827 ACATTATCCG
*
191837 CCCCGCATCCGCCCA
1 CCCCACATCCGCCCA
191852 CCCCACATCCGCCCA
1 CCCCACATCCGCCCA
191867 CCC
1 CCC
191870 AACTAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.70, G:0.09, T:0.06
Consensus pattern (15 bp):
CCCCACATCCGCCCA
Found at i:195140 original size:18 final size:17
Alignment explanation
Indices: 195101--195143 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
195091 ATTATATGGA
195101 TATT-TTATTCATTTAT
1 TATTATTATTCATTTAT
*
195117 TTTTATTATTCATGTTAT
1 TATTATTATTCAT-TTAT
195135 TATTATTAT
1 TATTATTAT
195144 ATGTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTATTATTCATTTAT
Found at i:198253 original size:8 final size:8
Alignment explanation
Indices: 198240--198278 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
198230 GAACATTTCA
*
198240 TGCATTCT
1 TGCATTTT
198248 TGCA-TTT
1 TGCATTTT
198255 TGCATTTT
1 TGCATTTT
*
198263 TGCCTTTT
1 TGCATTTT
198271 TGCATTTT
1 TGCATTTT
198279 CATCTACAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
7 6 0.22
8 21 0.78
ACGTcount: A:0.10, C:0.18, G:0.13, T:0.59
Consensus pattern (8 bp):
TGCATTTT
Found at i:199440 original size:16 final size:16
Alignment explanation
Indices: 199414--199465 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
199404 AGATCCAATC
199414 AAGAACAAAAAAG-AA
1 AAGAACAAAAAAGCAA
199429 AAGAAGCAAAAAAGCAA
1 AAGAA-CAAAAAAGCAA
* *
199446 AA-AAAAAACAAAGAAA
1 AAGAACAAA-AAAGCAA
199462 AAGA
1 AAGA
199466 GAAACAAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
15 8 0.26
16 18 0.58
17 5 0.16
ACGTcount: A:0.79, C:0.08, G:0.13, T:0.00
Consensus pattern (16 bp):
AAGAACAAAAAAGCAA
Found at i:199465 original size:38 final size:38
Alignment explanation
Indices: 199421--199495 Score: 100
Period size: 38 Copynumber: 2.0 Consensus size: 38
199411 ATCAAGAACA
*
199421 AAAAAGA-AAAGAAGCAA-AAAAGCAAAAAAAAAACAAAG
1 AAAAAGAGAAACAAG-AACAAAAG-AAAAAAAAAACAAAG
*
199459 AAAAAGAGAAACAAGAACAAAAGGAAAAAAAAACAAA
1 AAAAAGAGAAACAAGAACAAAAGAAAAAAAAAACAAA
199496 AATCAAAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
38 22 0.67
39 11 0.33
ACGTcount: A:0.79, C:0.08, G:0.13, T:0.00
Consensus pattern (38 bp):
AAAAAGAGAAACAAGAACAAAAGAAAAAAAAAACAAAG
Found at i:199492 original size:22 final size:23
Alignment explanation
Indices: 199455--199510 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
199445 AAAAAAAAAC
*
199455 AAAGAAAAAGAGAAACAAGAA-CAA
1 AAAGAAAAA-A-AAACAAAAATCAA
*
199479 AAGGAAAAAAAAACAAAAATCAA
1 AAAGAAAAAAAAACAAAAATCAA
199502 AAAGAAAAA
1 AAAGAAAAA
199511 GGGACAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.29
23 12 0.43
24 8 0.29
ACGTcount: A:0.79, C:0.07, G:0.12, T:0.02
Consensus pattern (23 bp):
AAAGAAAAAAAAACAAAAATCAA
Found at i:200177 original size:22 final size:22
Alignment explanation
Indices: 200149--200199 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
200139 CCCCATCAAT
200149 CCTTTGAGCATCAAATACCAAA
1 CCTTTGAGCATCAAATACCAAA
*
200171 CCTTTGAGCATCAAATGCCAAA
1 CCTTTGAGCATCAAATACCAAA
200193 CCTTTGA
1 CCTTTGA
200200 CCAAACACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.25
Consensus pattern (22 bp):
CCTTTGAGCATCAAATACCAAA
Found at i:201109 original size:36 final size:36
Alignment explanation
Indices: 201060--201164 Score: 156
Period size: 36 Copynumber: 2.9 Consensus size: 36
201050 GTGCTCACCA
201060 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAACT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAACT
* *
201096 TTGTCTCTGTTGAGACAGTTTCCCTTGAAACAAAATT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAAC-AAACT
* * *
201133 TTTTCTCCCTTGAGACAGTTTCTCTTGAAACA
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
201165 TAAACATTGA
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
36 31 0.50
37 31 0.50
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (36 bp):
TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAACT
Found at i:201160 original size:37 final size:37
Alignment explanation
Indices: 201060--201169 Score: 159
Period size: 37 Copynumber: 3.0 Consensus size: 37
201050 GTGCTCACCA
201060 TTGTCTCTCTTGAGACAGTTTCCCTTGAAAC-AAACT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAACT
* *
201096 TTGTCTCTGTTGAGACAGTTTCCCTTGAAACAAAATT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAACT
* * *
201133 TTTTCTCCCTTGAGACAGTTTCTCTTGAAACATAAAC
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACA-AAAC
201170 ATTGAAAACA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
36 30 0.46
37 32 0.49
38 3 0.05
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (37 bp):
TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAACT
Found at i:201208 original size:50 final size:50
Alignment explanation
Indices: 201153--201312 Score: 133
Period size: 50 Copynumber: 3.2 Consensus size: 50
201143 TGAGACAGTT
201153 TCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAGTTTTGTC
1 TCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAGTTTTGTC
* * *** * * * * ** * *** *
201203 TCTCTTGAGATAGTTTCCCTTGAAACAAAATTCCGTCTCCATTGAG-ACAGTT
1 TCTCTTGAAACA-TAAACATTGAAA-ACATTTCCCT-TGAAATGAGTTTTGTC
*
201255 TCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTTGTC
1 TCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAGTTTTGTC
201305 TCTCTTGA
1 TCTCTTGA
201313 GATAGTTTCC
Statistics
Matches: 73, Mismatches: 33, Indels: 8
0.64 0.29 0.07
Matches are distributed among these distances:
49 5 0.07
50 27 0.37
51 16 0.22
52 19 0.26
53 6 0.08
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.36
Consensus pattern (50 bp):
TCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAGTTTTGTC
Found at i:201254 original size:102 final size:102
Alignment explanation
Indices: 201078--201433 Score: 595
Period size: 102 Copynumber: 3.5 Consensus size: 102
201068 CTTGAGACAG
** * * * *
201078 TTTCCCTTGAAACAAACTTTGTCTCTGTTGAGACAGTTTCCCTTGAAACAAAATTTTTTCTCCCT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
201143 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
66 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
* ** *
201180 TTTCCCTTGAAATGAGTTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTCCGTCTCCAT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
201245 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
66 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
201282 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
201347 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
66 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
** *
201384 TTTCCCTTGAAATGAATTCCGTCTCTCTTGAGATAGTTTCTCTTGAAACA
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACA
201434 TAAACATTGA
Statistics
Matches: 237, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
102 237 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.37
Consensus pattern (102 bp):
TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCT
TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
Found at i:201255 original size:37 final size:37
Alignment explanation
Indices: 201196--201368 Score: 129
Period size: 37 Copynumber: 4.9 Consensus size: 37
201186 TTGAAATGAG
*
201196 TTTTGTCTCTC-TTGAGATAGTTTCCCTTGAAACAAAA
1 TTTTGTCTC-CATTGAGACAGTTTCCCTTGAAACAAAA
** *
201233 TTCCGTCTCCATTGAGACAGTTTCTCTTGAAACATAAA
1 TTTTGTCTCCATTGAGACAGTTTCCCTTGAAACA-AAA
* **
201271 ---------CATTGAAAACA-TTTCCCTTGAAA-TGAA
1 TTTTGTCTCCATTG-AGACAGTTTCCCTTGAAACAAAA
*
201298 TTTTGTCTCTC-TTGAGATAGTTTCCCTTGAAACAAAA
1 TTTTGTCTC-CATTGAGACAGTTTCCCTTGAAACAAAA
* *
201335 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
1 TTTTGTCTCCATTGAGACAGTTTCCCTTGAAACA
201369 TAAACATTGA
Statistics
Matches: 106, Mismatches: 14, Indels: 32
0.70 0.09 0.21
Matches are distributed among these distances:
27 2 0.02
29 16 0.15
30 4 0.04
35 3 0.03
36 17 0.16
37 61 0.58
38 3 0.03
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (37 bp):
TTTTGTCTCCATTGAGACAGTTTCCCTTGAAACAAAA
Found at i:201423 original size:65 final size:65
Alignment explanation
Indices: 201339--201498 Score: 293
Period size: 65 Copynumber: 2.5 Consensus size: 65
201329 ACAAAATTTT
*
201339 GTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTCC
1 GTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTCC
* *
201404 GTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTTC
1 GTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTCC
201469 GTCTCTCTTGAGACAGTTTCTCTTGAAACA
1 GTCTCTCTTGAGACAGTTTCTCTTGAAACA
201499 AAATTTTGTC
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
65 91 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (65 bp):
GTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTCC
Found at i:201424 original size:167 final size:169
Alignment explanation
Indices: 201216--201533 Score: 552
Period size: 167 Copynumber: 1.9 Consensus size: 169
201206 CTTGAGATAG
201216 TTTCCCTTGAAACAAAATTCCGTCTCCATTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
1 TTTCCCTTGAAACAAAATTCCGTCTCCATTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
* *
201281 ATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCC
66 ATTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCC
201346 TTGAGACAG-TTTCTCTTGAAACATAAACATTGAAAACA
131 TTGAGACAGTTTTCTCTTGAAACATAAACATTGAAAACA
** *
201384 TTTCCCTTGAAA-TGAATTCCGTCTCTC-TTGAGATAGTTTCTCTTGAAACATAAACATTGAAAA
1 TTTCCCTTGAAACAAAATTCCGTCTC-CATTGAGACAGTTTCTCTTGAAACATAAACATTGAAAA
*
201447 CATTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAATTTTGTCTCC
65 CATTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCC
201512 CTTGAGACAGTTTTCTCTTGAA
130 CTTGAGACAGTTTTCTCTTGAA
201534 GCATCATCTT
Statistics
Matches: 142, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
167 118 0.83
168 24 0.17
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (169 bp):
TTTCCCTTGAAACAAAATTCCGTCTCCATTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
ATTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCC
TTGAGACAGTTTTCTCTTGAAACATAAACATTGAAAACA
Found at i:201506 original size:204 final size:198
Alignment explanation
Indices: 201061--201533 Score: 560
Period size: 204 Copynumber: 2.3 Consensus size: 198
201051 TGCTCACCAT
* *
201061 TGTCTCTCTTGAGACAGTTTCCCTTGAAACAAACTTTGTCTCTGTTGAGACAGTTTCCCTTGAAA
1 TGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAA
*
201126 CAAAATTTTTTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAA
66 CAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAA
* ** *
201191 ATGAGTTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTCCGTCTCCATTGAGACAGTTT
131 ATGAATTCCGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAA--------CCATTGAAACAGTTT
* *
201256 CTCTTGAAACA
188 CCCTTGAAAAA
*** * * ** *
201267 T-AAAC-ATTGAAAACA-TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAA
1 TGTCTCTCTTG-AGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAA
201329 ACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGA
65 ACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGA
*
201394 AATGAATTCCGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAA-CATTGAAAACA-TTTCCCTT
130 AATGAATTCCGTCTCTCTTGAGATAGTTTCCCTTGAAACA-AAACCATTG-AAACAGTTTCCCTT
201457 GAAATGAA
193 GAAA--AA
* * *
201465 TTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTTCTCT
1 --T-GTCTCTCTTGAGACAGTTTCCCTTGAAAC-AAATTTTGTCTCTCTTGAGACAG-TTTCCCT
201530 TGAA
61 TGAA
201534 GCATCATCTT
Statistics
Matches: 225, Mismatches: 29, Indels: 27
0.80 0.10 0.10
Matches are distributed among these distances:
196 16 0.07
197 4 0.02
198 1 0.00
200 1 0.00
202 5 0.02
203 14 0.06
204 165 0.73
205 18 0.08
206 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (198 bp):
TGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAA
CAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAA
ATGAATTCCGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAACCATTGAAACAGTTTCCCTTGAA
AAA
Found at i:202441 original size:105 final size:105
Alignment explanation
Indices: 202280--202729 Score: 703
Period size: 105 Copynumber: 4.3 Consensus size: 105
202270 GCCATCCGCG
* * * *
202280 ATTTCAACTCCACGACGGAGGATATCGTGGCACTCGAGACAACGCAAGTTCAACTTCACGACGAA
1 ATTTCAACTTCACAACGAAGGATAT--TGG-ACTCCAGACAACGCAAGTTCAACTTCACGACGAA
* *
202345 GGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
63 GGGACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCCA
*
202388 ATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
*
202453 ACCGCTGCTTGTCAACAACAACTTCCCAATCGCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCCA
* *
202493 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGATGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
202558 ACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCCA
202598 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* **
202663 ACCGCTGCTTGTCAACAA-AA-TT-TC-AT-TCAGATTCA
66 ACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCCA
* *
202698 ATTTCAACTTCACGACGGAGGATATTGGACTC
1 ATTTCAACTTCACAACGAAGGATATTGGACTC
202730 TGAACAATGC
Statistics
Matches: 323, Mismatches: 19, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
100 37 0.11
101 2 0.01
102 1 0.00
103 2 0.01
104 2 0.01
105 254 0.79
106 3 0.01
108 22 0.07
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.22
Consensus pattern (105 bp):
ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
ACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCCA
Found at i:203875 original size:18 final size:17
Alignment explanation
Indices: 203836--203878 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
203826 ATTATATGGA
203836 TATT-TTATTCATTTAT
1 TATTATTATTCATTTAT
*
203852 TTTTATTATTCATGTTAT
1 TATTATTATTCAT-TTAT
203870 TATTATTAT
1 TATTATTAT
203879 ATGTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTATTATTCATTTAT
Found at i:204084 original size:16 final size:16
Alignment explanation
Indices: 204042--204073 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
204032 TAGTTTATTT
*
204042 ATATACATATTATTAA
1 ATATATATATTATTAA
204058 ATATATATATTATTAA
1 ATATATATATTATTAA
204074 TTATTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
ATATATATATTATTAA
Found at i:204182 original size:25 final size:22
Alignment explanation
Indices: 204131--204184 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
204121 TATAACTTTA
*
204131 TATTTTTTTTTATTATTTCGTT
1 TATTTTTTTTTATTATTTAGTT
*
204153 T-TTTTTTTATTATTATTATATTAT
1 TATTTTTTT-TTATTATT-TAGT-T
204177 TATTTTTT
1 TATTTTTT
204185 AAAAACCTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 7 0.27
22 9 0.35
23 2 0.08
24 2 0.08
25 6 0.23
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.78
Consensus pattern (22 bp):
TATTTTTTTTTATTATTTAGTT
Found at i:204375 original size:2 final size:2
Alignment explanation
Indices: 204368--204409 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
204358 TAATACTTTG
*
204368 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
204410 TTTTCCTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:215841 original size:23 final size:23
Alignment explanation
Indices: 215756--215839 Score: 116
Period size: 23 Copynumber: 3.7 Consensus size: 23
215746 CAGCTCATAT
*
215756 AATTGCACC-TAAGTGCCACGTAG
1 AATTGCACCGT-AGTGCCGCGTAG
*
215779 AATTGCACTGTAGTGCCGCGTAG
1 AATTGCACCGTAGTGCCGCGTAG
* *
215802 AATTGCACCGGAGTGTCGCGTAG
1 AATTGCACCGTAGTGCCGCGTAG
215825 AATTGCACCGTAGTG
1 AATTGCACCGTAGTG
215840 TCATATAATA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
23 53 0.98
24 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (23 bp):
AATTGCACCGTAGTGCCGCGTAG
Found at i:216478 original size:19 final size:20
Alignment explanation
Indices: 216441--216478 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
216431 TCTTTTTTTA
*
216441 TGGGGGAATCGGTTCCCCCC
1 TGGGGGAATCGATTCCCCCC
*
216461 TGGGGGTATCGATTCCCC
1 TGGGGGAATCGATTCCCC
216479 TCTAGCATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.32, G:0.34, T:0.24
Consensus pattern (20 bp):
TGGGGGAATCGATTCCCCCC
Found at i:221657 original size:27 final size:27
Alignment explanation
Indices: 221615--221680 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
221605 AAAACAGTGT
*
221615 TGAATGATTCAACACAGAAGTACATTC
1 TGAATGATTCAGCACAGAAGTACATTC
*
221642 TGAATGATTCAGCACAGAAGTACATTT
1 TGAATGATTCAGCACAGAAGTACATTC
221669 TGAATGATTCAG
1 TGAATGATTCAG
221681 AGCCATTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (27 bp):
TGAATGATTCAGCACAGAAGTACATTC
Found at i:221754 original size:15 final size:15
Alignment explanation
Indices: 221734--221771 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
221724 AGAGTCTCTG
221734 AATCATTCAACGCTT
1 AATCATTCAACGCTT
* *
221749 AATCATTCAGCGTTT
1 AATCATTCAACGCTT
221764 AATCATTC
1 AATCATTC
221772 TGAAGTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.37
Consensus pattern (15 bp):
AATCATTCAACGCTT
Found at i:237639 original size:2 final size:2
Alignment explanation
Indices: 237632--237676 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
237622 AAGAAAAATG
237632 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
237674 AT A
1 AT A
237677 GGAAGATGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:238179 original size:23 final size:23
Alignment explanation
Indices: 238145--238213 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
238135 CAACCTTATA
238145 TGGCACTTCGGTGCATTTCTACG
1 TGGCACTTCGGTGCATTTCTACG
* * *
238168 TGGCACTACGGTGTAATTCTACG
1 TGGCACTTCGGTGCATTTCTACG
* *
238191 TGGAACTTCGGTGCATTTATACG
1 TGGCACTTCGGTGCATTTCTACG
238214 AGCTGTGGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.33
Consensus pattern (23 bp):
TGGCACTTCGGTGCATTTCTACG
Found at i:252237 original size:83 final size:85
Alignment explanation
Indices: 252056--252235 Score: 294
Period size: 83 Copynumber: 2.1 Consensus size: 85
252046 AAATTTATCC
*
252056 TTAAACTATTTTAGATTTACAAAAAAAAGTCTATAATTAAAATTTCATATGAAGTTGAGGGGTTA
1 TTAAACTATTTTAGATTTA-AAAAAAAAGTCTATAATTAAAATTTCATATGAAGTTCAGGGGTTA
*
252121 AAATAAAATTTTACCCTTTCA
65 AAATAAAATTTTACCCTTTAA
*
252142 TTAAACTATTTTAGATTT-AAAAAAAA-TCTATAATTAAAATTTTATATGAAGTTCAGGGGTTAA
1 TTAAACTATTTTAGATTTAAAAAAAAAGTCTATAATTAAAATTTCATATGAAGTTCAGGGGTTAA
*
252205 AATAAAATTTTATCCTTTAA
66 AATAAAATTTTACCCTTTAA
252225 TTAAA-TATTTT
1 TTAAACTATTTT
252236 TATATTTTCA
Statistics
Matches: 90, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
82 6 0.07
83 58 0.64
84 8 0.09
86 18 0.20
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.41
Consensus pattern (85 bp):
TTAAACTATTTTAGATTTAAAAAAAAAGTCTATAATTAAAATTTCATATGAAGTTCAGGGGTTAA
AATAAAATTTTACCCTTTAA
Found at i:252310 original size:38 final size:36
Alignment explanation
Indices: 252226--252310 Score: 84
Period size: 37 Copynumber: 2.3 Consensus size: 36
252216 ATCCTTTAAT
* * *
252226 TAAATATTTTTATATTTTCAATTTTGTAAAAAAATTA
1 TAAATA-TTTTATAATTTAAAATTTGTAAAAAAATTA
252263 TATAA-ATTTTATGAATTTAAAATTT-TAAAGAAAATATA
1 TA-AATATTTTAT-AATTTAAAATTTGTAAA-AAAAT-TA
252301 TAAATATTTT
1 TAAATATTTT
252311 CCAACTTGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
36 10 0.25
37 19 0.47
38 11 0.28
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (36 bp):
TAAATATTTTATAATTTAAAATTTGTAAAAAAATTA
Found at i:253671 original size:18 final size:19
Alignment explanation
Indices: 253634--253672 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
253624 TTATTCAATG
253634 AGTATCGATACCTAAAGGGT
1 AGTATCGATACC-AAAGGGT
253654 AGTATCGATACC-AAGGGT
1 AGTATCGATACCAAAGGGT
253672 A
1 A
253673 TCGATAGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.37
20 12 0.63
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (19 bp):
AGTATCGATACCAAAGGGT
Found at i:253742 original size:79 final size:79
Alignment explanation
Indices: 253655--253824 Score: 324
Period size: 79 Copynumber: 2.2 Consensus size: 79
253645 CTAAAGGGTA
*
253655 GTATCGATACCAAGGGTATCGATAGCATTAGACAAGTATCGATACCATTTTTGAAATAAAATTCC
1 GTATCGATACCAAGGGTACCGATAGCATTAGACAAGTATCGATACCATTTTTGAAATAAAATTCC
253720 AAAACCGGGAAAAG
66 AAAACCGGGAAAAG
253734 GTATCGATACCAAGGGTACCGATAGCATTAGACAAGTATCGATACCATTTTTGAAATAAAATTCC
1 GTATCGATACCAAGGGTACCGATAGCATTAGACAAGTATCGATACCATTTTTGAAATAAAATTCC
253799 AAAACCGGGAAAAG
66 AAAACCGGGAAAAG
253813 GTAT-GATACCAA
1 GTATCGATACCAA
253825 AGCACATTAT
Statistics
Matches: 90, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
78 8 0.09
79 82 0.91
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.24
Consensus pattern (79 bp):
GTATCGATACCAAGGGTACCGATAGCATTAGACAAGTATCGATACCATTTTTGAAATAAAATTCC
AAAACCGGGAAAAG
Found at i:254532 original size:21 final size:21
Alignment explanation
Indices: 254501--254647 Score: 141
Period size: 21 Copynumber: 6.9 Consensus size: 21
254491 TCAAGGGTTC
254501 TATGTGGTCCTTCGGGACATA
1 TATGTGGTCCTTCGGGACATA
* * * *
254522 TGTGTGATCCTTTGGAACATA
1 TATGTGGTCCTTCGGGACATA
** *
254543 TATGAAGTCTTTCGGGACATA
1 TATGTGGTCCTTCGGGACATA
* * *
254564 TATTTGGTCCTTTGGAACATA
1 TATGTGGTCCTTCGGGACATA
* * *
254585 TATGTGGTTCTTAGGGACAATTT
1 TATGTGGTCCTTCGGGAC-A-TA
*
254608 TATGTGGTCATTCGGGACATA
1 TATGTGGTCCTTCGGGACATA
*
254629 TATGAGGTCCTTCGGGACA
1 TATGTGGTCCTTCGGGACA
254648 ATTTTATATA
Statistics
Matches: 96, Mismatches: 28, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
21 78 0.81
22 2 0.02
23 16 0.17
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (21 bp):
TATGTGGTCCTTCGGGACATA
Found at i:254611 original size:23 final size:23
Alignment explanation
Indices: 254585--254654 Score: 74
Period size: 23 Copynumber: 3.1 Consensus size: 23
254575 TTGGAACATA
*
254585 TATGTGGTTCTTAGGGACAATTT
1 TATGTGGTTCTTCGGGACAATTT
*
254608 TATGTGG-TCATTCGGGAC-A-TA
1 TATGTGGTTC-TTCGGGACAATTT
* *
254629 TATGAGGTCCTTCGGGACAATTT
1 TATGTGGTTCTTCGGGACAATTT
254652 TAT
1 TAT
254655 ATACCACTCA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
21 15 0.39
22 5 0.13
23 18 0.47
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.39
Consensus pattern (23 bp):
TATGTGGTTCTTCGGGACAATTT
Done.