Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008296.1 Hibiscus syriacus cultivar Beakdansim tig00110963_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1205179
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 1 of 7
Found at i:3611 original size:227 final size:217
Alignment explanation
Indices: 3210--3640 Score: 652
Period size: 227 Copynumber: 1.9 Consensus size: 217
3200 GTAAATTATC
* *
3210 TATCCTTTTTATAAAGTGTCCATACTTATTTCACTGTGAAATATATTATATTATCTTAGTTAATA
1 TATCATTTTTATAAAGTGTCCATACTTATTTCACTGTGAAAAATATTATATTATCTTAGTTAATA
3275 TTGTTAATTTAAAATCTAAATAATATTTTATAAATATCAAAACAATCAAATAATTTTTGTGTAAA
66 TTGTTAATTTAAAATCTAAATAATATTTTATAAATATCAAAACAATCAAATAATTTTTGTGTAAA
*
3340 TGAAATTATTAAATTAATATTGTAGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAA
131 TGAAATTATTAAATTAATATTGTAGTGAAAAACATGAAACACTATT--AAAAAATTGAAACAT-A
3405 ATTACATAACTTTCAAAAAAGTATA
193 ATTACATAACTTTCAAAAAAGTATA
* *
3430 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAAATATTTATTATTATATTTTGG
1 TATCATTTTTAT-AAAGTGTCCATACTTATTTCACTG-TGAAAAATA-TTA-TA-T-TATCTTAG
*
3495 TTAATA-TGTTAAATTTAAATTCTAAATAATATTTTATAAAATATC-AAACAATCAAATAATATT
60 TTAATATTGTT-AATTTAAAATCTAAATAATATTTTAT-AAATATCAAAACAATCAAATAAT-TT
* *
3558 TTGTGTAAATTAAATTATTAAATTAATA-TGTAGGTGAAAAACATGAAACACTATTAAATAATTG
122 TTGTGTAAATGAAATTATTAAATTAATATTGTA-GTGAAAAACATGAAACACTATTAAAAAATTG
3622 AAACATAATTACATAACTT
186 AAACATAATTACATAACTT
3641 AAAAGCAGTT
Statistics
Matches: 193, Mismatches: 8, Indels: 16
0.89 0.04 0.07
Matches are distributed among these distances:
220 11 0.06
221 24 0.12
222 8 0.04
223 3 0.02
224 15 0.08
225 19 0.10
226 56 0.29
227 57 0.30
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (217 bp):
TATCATTTTTATAAAGTGTCCATACTTATTTCACTGTGAAAAATATTATATTATCTTAGTTAATA
TTGTTAATTTAAAATCTAAATAATATTTTATAAATATCAAAACAATCAAATAATTTTTGTGTAAA
TGAAATTATTAAATTAATATTGTAGTGAAAAACATGAAACACTATTAAAAAATTGAAACATAATT
ACATAACTTTCAAAAAAGTATA
Found at i:3732 original size:20 final size:19
Alignment explanation
Indices: 3709--3753 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
3699 CGATATACCA
3709 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
3729 GGTAACAAATGATAAAACC
1 GGTAAAAAATGATAAAACC
3748 GGTAAA
1 GGTAAA
3754 TTTAAAAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.53, C:0.11, G:0.18, T:0.18
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:3921 original size:17 final size:19
Alignment explanation
Indices: 3882--3924 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
3872 ATGTAAAAAT
3882 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
3902 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
3919 ATGATA
1 ATGATA
3925 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:8051 original size:24 final size:24
Alignment explanation
Indices: 8019--8065 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
8009 AATGTAGGGT
8019 TAATTTTGTATA-GATTTATATTTA
1 TAATTTTGTATACGA-TTATATTTA
8043 TAATTTTGTATACGATTATATTT
1 TAATTTTGTATACGATTATATTT
8066 TGTATGTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 20 0.91
25 2 0.09
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (24 bp):
TAATTTTGTATACGATTATATTTA
Found at i:8853 original size:195 final size:198
Alignment explanation
Indices: 8183--9331 Score: 1932
Period size: 194 Copynumber: 5.9 Consensus size: 198
8173 CAATATGGCC
* * *
8183 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAAACATCGAAA
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAAC
* * *
8248 CC-AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTCTACCGGTTTTAAGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
*
8312 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCG--ATTTTTTTCCAGAATGAAT
130 GAATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
8375 GGAA
195 GGAA
*
8379 AACAGTGTGCACCCATAAAGTGTCGATCCATA-ATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
8443 CAAAAGTAT-ATGTAATATGTAATTTTTCAATCTAACC-GTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
8506 AATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
131 AATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
8571 GAA
196 GAA
8574 AACAGGG-GCACCCATAAAGTGTCGATCC--ATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
8636 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGG-TTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
8700 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
131 AATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
8765 GAA
196 GAA
*
8768 AACAGGGTGCACCCATAAAGTGTTGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
8832 CAAAAGTAT-ATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCAG-TTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
8895 AATATGTCTAAATAA--TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCCCAGAATGA
131 AATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTT--CCAGAATGA
8958 ATGGAA
193 ATGGAA
8964 AACA-GGTGCACCCAT-AAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
9027 CAAAAGTATAATGTAATAT-TAATTTTTCAATCTAACCGGTACAA-T-TACTGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
9089 AATATGTATAAA-ATATGTGTCGACACTAATAT--TTTGTGTCGATATTTTTTTCCCCAGAATGA
131 AATATGTATAAATA-ATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTT--CCAGAATGA
9151 ATGGAA
193 ATGGAA
*
9157 AACAGCGTGCA-CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
9221 CAAAAGTATAATGTAATATGTAATTTTTCAATCTGACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
9286 AATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
131 AATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
9332 CTAATTTAAA
Statistics
Matches: 908, Mismatches: 19, Indels: 49
0.93 0.02 0.05
Matches are distributed among these distances:
192 1 0.00
193 172 0.19
194 320 0.35
195 239 0.26
196 113 0.12
197 50 0.06
198 1 0.00
199 12 0.01
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (198 bp):
AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
GAA
Found at i:8985 original size:389 final size:390
Alignment explanation
Indices: 8183--9331 Score: 1916
Period size: 389 Copynumber: 2.9 Consensus size: 390
8173 CAATATGGCC
* * *
8183 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAAACATCGAAA
1 AACA-GGTGCACCCATAAAGTGTCGATCCA-ATAT-AAAAAGTGTCGATCCCAAAATCATCGAAC
*
8248 CC-AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTCTACCGGTTTTAAGAGA
63 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAA-T-TACCGGTTTTATGAGA
8312 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCG--ATTTTTTTCCAGAATGAAT
126 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAAT
*
8375 GGAAAACAGTGTGCACCCATAAAGTGTCGATCCATA-ATAAAAAGTGTCGATCCCAAAATCATCG
191 GGAAAACAGCGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
8439 AACCCAAAAGTATATGTAATATGTAATTTTTCAATCTAACC-GTACAATTATACCGGTTTTATGA
256 AACCCAAAAGTATATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
8503 GAGAATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGA
321 GAGAATATGTATAAATAA-GTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGA
8568 ATGGAA
385 ATGGAA
*
8574 AACAGGGGCACCCATAAAGTGTCGATCC-ATATAAAAAGTGTCGATCCCAAAATCATCGAACCCA
1 AACAGGTGCACCCATAAAGTGTCGATCCAATATAAAAAGTGTCGATCCCAAAATCATCGAACCCA
8638 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGG-TTTATGAGAGAA
66 AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAA-T-TACCGGTTTTATGAGAGAA
8702 TATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATGGA
129 TATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATGGA
* *
8767 AAACAGGGTGCACCCATAAAGTGTTGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAAC
194 AAACAGCGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAAC
*
8831 CCAAAAGTATATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCAG-TTTATGAGAG
259 CCAAAAGTATATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
8895 AATATGTCTAAATAA-TGTCGACACTAATATAGTTTGTGTCGATATTTTTTTTCCCCAGAATGAA
324 AATATGTATAAATAAGTGTCGACACTAATATAGTTTGTGTCGATA-TTTTTTT--CCAGAATGAA
8959 TGGAA
386 TGGAA
8964 AACAGGTGCACCCAT-AAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCC
1 AACAGGTGCACCCATAAAGTGTCGATCCA-ATATAAAAAGTGTCGATCCCAAAATCATCGAACCC
*
9028 AAAAGTATAATGTAATAT-TAATTTTTCAATCTAACCGGTACAATTACTGGTTTTATGAGAGAAT
65 AAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTACCGGTTTTATGAGAGAAT
*
9092 ATGTATAAA-ATATGTGTCGACACTAATAT--TTTGTGTCGATATTTTTTTCCCCAGAATGAATG
130 ATGTCTAAATA-ATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTT--CCAGAATGAATG
9154 GAAAACAGCGTGCA-CCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
192 GAAAACAGCGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
*
9218 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTGACCGGTACAATTATACCGGTTTTATGA
257 ACCCAAAAGTAT-ATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGA
9283 GAGAATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
321 GAGAATATGTATAAATAA-GTGTCGACACTAATATAGTTTGTGTCGATA
9332 CTAATTTAAA
Statistics
Matches: 720, Mismatches: 19, Indels: 36
0.93 0.02 0.05
Matches are distributed among these distances:
387 128 0.18
388 89 0.12
389 258 0.36
390 135 0.19
391 81 0.11
393 29 0.04
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (390 bp):
AACAGGTGCACCCATAAAGTGTCGATCCAATATAAAAAGTGTCGATCCCAAAATCATCGAACCCA
AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTACCGGTTTTATGAGAGAATA
TGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATGGAAA
ACAGCGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACCC
AAAAGTATATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAGAA
TATGTATAAATAAGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATGGAA
Found at i:9318 original size:23 final size:23
Alignment explanation
Indices: 9292--9343 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 23
9282 AGAGAATATG
9292 TATAAATAATGTGTCGACACTAA
1 TATAAATAATGTGTCGACACTAA
* * *
9315 TAT-AGT-TTGTGTCGATACTAA
1 TATAAATAATGTGTCGACACTAA
*
9336 TTTAAATA
1 TATAAATA
9344 TCAAGTTTTC
Statistics
Matches: 22, Mismatches: 5, Indels: 4
0.71 0.16 0.13
Matches are distributed among these distances:
21 15 0.68
22 4 0.18
23 3 0.14
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (23 bp):
TATAAATAATGTGTCGACACTAA
Found at i:10793 original size:18 final size:18
Alignment explanation
Indices: 10772--10833 Score: 79
Period size: 18 Copynumber: 3.4 Consensus size: 18
10762 AGCGGTCGCA
10772 GAAGATGAAGCTGACGAT
1 GAAGATGAAGCTGACGAT
* * *
10790 GAAGATGACGATGATGAT
1 GAAGATGAAGCTGACGAT
* *
10808 GACGATGAAGCTGGCGAT
1 GAAGATGAAGCTGACGAT
10826 GAAGATGA
1 GAAGATGA
10834 TGACGATGAT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.37, C:0.10, G:0.35, T:0.18
Consensus pattern (18 bp):
GAAGATGAAGCTGACGAT
Found at i:10796 original size:6 final size:6
Alignment explanation
Indices: 10772--10863 Score: 67
Period size: 6 Copynumber: 15.3 Consensus size: 6
10762 AGCGGTCGCA
* * * * * *
10772 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GATGAT GACGAT GAAGCT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
** * * * * *
10820 GGCGAT GAAGAT GATGAC GATGAT GATGAT GATGAT GAAGAT GA
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GA
10864 TGATCCAAAC
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 68 1.00
ACGTcount: A:0.37, C:0.08, G:0.35, T:0.21
Consensus pattern (6 bp):
GAAGAT
Found at i:10807 original size:3 final size:3
Alignment explanation
Indices: 10787--10867 Score: 72
Period size: 3 Copynumber: 27.0 Consensus size: 3
10777 TGAAGCTGAC
* * * * * ** *
10787 GAT GAA GAT GAC GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
* *
10835 GAC GAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
10868 CCAAACAAGT
Statistics
Matches: 59, Mismatches: 19, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.36, C:0.06, G:0.35, T:0.23
Consensus pattern (3 bp):
GAT
Found at i:10826 original size:36 final size:36
Alignment explanation
Indices: 10775--10851 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
10765 GGTCGCAGAA
*
10775 GATGAAGCTGACGATGAAGATGACGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
* * *
10811 GATGAAGCTGGCGATGAAGATGATGACGATGATGAT
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
10847 GATGA
1 GATGA
10852 TGATGAAGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.35, C:0.09, G:0.35, T:0.21
Consensus pattern (36 bp):
GATGAAGCTGACGATGAAGATGACGACGATGATGAC
Found at i:10867 original size:12 final size:12
Alignment explanation
Indices: 10775--10863 Score: 88
Period size: 12 Copynumber: 7.4 Consensus size: 12
10765 GGTCGCAGAA
*
10775 GATGAAGCTGAC
1 GATGAAGATGAC
10787 GATGAAGATGAC
1 GATGAAGATGAC
*
10799 GATGATGATGAC
1 GATGAAGATGAC
* *
10811 GATGAAGCTGGC
1 GATGAAGATGAC
*
10823 GATGAAGATGAT
1 GATGAAGATGAC
* * *
10835 GACGATGATGAT
1 GATGAAGATGAC
* *
10847 GATGATGATGAA
1 GATGAAGATGAC
10859 GATGA
1 GATGA
10864 TGATCCAAAC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 65 1.00
ACGTcount: A:0.36, C:0.08, G:0.35, T:0.21
Consensus pattern (12 bp):
GATGAAGATGAC
Found at i:10867 original size:18 final size:18
Alignment explanation
Indices: 10772--10863 Score: 76
Period size: 18 Copynumber: 5.1 Consensus size: 18
10762 AGCGGTCGCA
*
10772 GAAGATGAAGCTGACGAT
1 GAAGATGAAGATGACGAT
* *
10790 GAAGATGACGATGATGAT
1 GAAGATGAAGATGACGAT
* * *
10808 GACGATGAAGCTGGCGAT
1 GAAGATGAAGATGACGAT
* * *
10826 GAAGATGATGACGATGAT
1 GAAGATGAAGATGACGAT
* * *
10844 GATGATGATGATGAAGAT
1 GAAGATGAAGATGACGAT
10862 GA
1 GA
10864 TGATCCAAAC
Statistics
Matches: 57, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 57 1.00
ACGTcount: A:0.37, C:0.08, G:0.35, T:0.21
Consensus pattern (18 bp):
GAAGATGAAGATGACGAT
Found at i:13016 original size:181 final size:183
Alignment explanation
Indices: 12356--13203 Score: 1450
Period size: 182 Copynumber: 4.7 Consensus size: 183
12346 GCAATGCTAT
* *
12356 CGGTATAAATATACCGGTTTTATGCGTGAATAGGTCTACAACCTATATCGACACTTTTTAATCTT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
* * *
12421 GTATCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATA-CATTGTTAAAAAGTGTCGAC
66 GTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACCATT-TAAAAAAGTGTCGAC
*
12485 ATTTACACATCGGAACCCATAATTATAATGT-A-AGATAGTTTTGTAATATAAC
130 ATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
*
12537 CGGTATAAATATACC-GATTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
* *
12601 GTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAAAACTGTCGACA
66 GTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
12666 TTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
131 TTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
12719 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
12784 GTGTCGGTACTTTATGTCCATATTGGAAG-AAAATGTGTCGATACCATTTAAAAAACTGTCGACA
66 GTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
12848 TTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
131 TTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
12901 CGGTATAAATATACCGG-TTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
* *
12965 GTGTCGGTACTTTATGTCCATATTGGAAG-AAAATGTGTCGATACGATTT---AAAGTATCGACA
66 GTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
* *
13026 TTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
131 TTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
* *
13079 CGGTAT-AA-ATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTATAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
13142 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCG
66 GTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCG
13204 GTAATTTTAA
Statistics
Matches: 637, Mismatches: 21, Indels: 18
0.94 0.03 0.03
Matches are distributed among these distances:
176 7 0.01
177 75 0.12
178 86 0.14
180 132 0.21
181 122 0.19
182 138 0.22
183 77 0.12
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (183 bp):
CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
GTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
TTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
Found at i:14268 original size:23 final size:23
Alignment explanation
Indices: 14268--14380 Score: 146
Period size: 23 Copynumber: 5.1 Consensus size: 23
14258 AGCGCTTATA
*
14268 TAATAGGTATCGTTTATA-AATG
1 TAATAGGTATCGCTTATATAATG
14290 TAATA-G--T-GCTTATATAATG
1 TAATAGGTATCGCTTATATAATG
*
14309 TAATAGGTATCGTTTATATAATG
1 TAATAGGTATCGCTTATATAATG
*
14332 TAATAGGTAGCGCTTATATAATG
1 TAATAGGTATCGCTTATATAATG
* *
14355 TAATAGGTATCGTTTATATATTG
1 TAATAGGTATCGCTTATATAATG
14378 TAA
1 TAA
14381 AGTATCTATC
Statistics
Matches: 79, Mismatches: 7, Indels: 9
0.83 0.07 0.09
Matches are distributed among these distances:
18 6 0.08
19 10 0.13
20 1 0.01
21 1 0.01
22 6 0.08
23 55 0.70
ACGTcount: A:0.35, C:0.05, G:0.18, T:0.42
Consensus pattern (23 bp):
TAATAGGTATCGCTTATATAATG
Found at i:14352 original size:46 final size:46
Alignment explanation
Indices: 14242--14380 Score: 190
Period size: 46 Copynumber: 3.2 Consensus size: 46
14232 TAAGGTAAAC
*
14242 ATATGATGTAATAGGTAGCGC-T-TAT-A--TAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
14283 ATA-AATGTAATA-GT---GCTTATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
14324 ATATAATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
*
14370 ATATATTGTAA
1 ATATAATGTAA
14381 AGTATCTATC
Statistics
Matches: 86, Mismatches: 2, Indels: 15
0.83 0.02 0.15
Matches are distributed among these distances:
36 2 0.02
37 1 0.01
38 3 0.03
39 3 0.03
40 8 0.09
41 21 0.24
42 9 0.10
43 2 0.02
46 37 0.43
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.40
Consensus pattern (46 bp):
ATATAATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
Found at i:14825 original size:18 final size:18
Alignment explanation
Indices: 14804--14840 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14794 GTAATTGGAG
14804 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
14822 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
14840 T
1 T
14841 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:14848 original size:24 final size:24
Alignment explanation
Indices: 14796--14842 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
14786 TTTCATATGT
* *
14796 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
14820 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
14843 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:15139 original size:39 final size:39
Alignment explanation
Indices: 15096--15182 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
15086 TCCGATGCTC
*
15096 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
* * *
15135 ATCAAAATTCAAATCTCATATGATGTCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
15174 ATCAAAATC
1 ATCAAAATC
15183 TACAACTTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.48, C:0.18, G:0.14, T:0.20
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:15616 original size:23 final size:23
Alignment explanation
Indices: 15590--15646 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
15580 GTAAAAAATG
15590 ATGTAATAGGTAGCGCTTATATA
1 ATGTAATAGGTAGCGCTTATATA
* *
15613 ATGTAATAGGTATCGTTTATATA
1 ATGTAATAGGTAGCGCTTATATA
15636 ATGT--TAGGTAG
1 ATGTAATAGGTAG
15647 TGGTTTATTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 6 0.19
23 25 0.81
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (23 bp):
ATGTAATAGGTAGCGCTTATATA
Found at i:15643 original size:21 final size:22
Alignment explanation
Indices: 15590--15654 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 22
15580 GTAAAAAATG
* *
15590 ATGTAATAGGTAGCGCTTATATA
1 ATGT-ATAGGTATCGTTTATATA
15613 ATGTAATAGGTATCGTTTATATA
1 ATGT-ATAGGTATCGTTTATATA
*
15636 ATGT-TAGGTAGTGGTTTAT
1 ATGTATAGGTA-TCGTTTAT
15655 TGTAAAGTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 6 0.16
22 7 0.18
23 25 0.66
ACGTcount: A:0.31, C:0.05, G:0.23, T:0.42
Consensus pattern (22 bp):
ATGTATAGGTATCGTTTATATA
Found at i:16030 original size:23 final size:22
Alignment explanation
Indices: 15999--16061 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
15989 ATAGGTAAAA
15999 ATATGATGTAATAGGTAGCGCTT
1 ATAT-ATGTAATAGGTAGCGCTT
* *
16022 ATATAATGTAATAGGTATCGTTT
1 ATAT-ATGTAATAGGTAGCGCTT
*
16045 ATATATGTAATATGTAG
1 ATATATGTAATAGGTAG
16062 TTTATATTGT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
22 11 0.31
23 24 0.69
ACGTcount: A:0.35, C:0.05, G:0.21, T:0.40
Consensus pattern (22 bp):
ATATATGTAATAGGTAGCGCTT
Found at i:16106 original size:19 final size:19
Alignment explanation
Indices: 16071--16107 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
16061 GTTTATATTG
* *
16071 TAAAGTGTCTATCCTTTTA
1 TAAAGTGTCCATACTTTTA
16090 TAAAGTGTCCATACTTTT
1 TAAAGTGTCCATACTTTT
16108 TTCACTGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.46
Consensus pattern (19 bp):
TAAAGTGTCCATACTTTTA
Found at i:16181 original size:413 final size:417
Alignment explanation
Indices: 15392--16407 Score: 1702
Period size: 416 Copynumber: 2.5 Consensus size: 417
15382 GTTAATGTTG
15392 TTAAATTAAAAATTCTAAATAATATTTATAAAATATCAAATAATCAAATAA-TTTTTGTGCAAAT
1 TTAAATTAAAAATTCTAAATAATATTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAAT
15456 GAAATTATTAAATTAATATTGTAGGTGGAAAACATG-AACACTATTAAAAAAAATTG-AA-ATAA
66 GAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAA
15518 ATTACATAACTTT-AAA-AAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTC-A-ATAATA
131 ATT--ATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATA
15579 GGTAAAAAATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTTAGG
194 GGTAAAAAATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTTAGG
*
15644 TAGTGGTTTATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTTCATACTTTTTTCACTGTGGAAA
259 TAGT-GTTTATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAA
15709 ACATTAATTTAAGGTTATCTTTGAGTGAGTTTTAAGATTTTAATTTAGTAATTATAGGCGTCTAA
323 ACATTAATTTAAGGTTATCTTTGAGTGAGTTTTAAGATTTTAATTTAGTAATTATAGGCGTCTAA
15774 TGA-T-TTTTTACGTT-ATATATATTATTA
388 TGATTATTTTTACGTTAATATATATTATTA
*
15801 TTAAATTAAAAATTCTAAATAATTTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAAT
1 TTAAATTAAAAATTCTAAATAATATTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAAT
15866 GAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAA
66 GAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAA
*
15931 A-T-TAACTTTAAAAGAAATATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGG
131 ATTATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGG
*
15994 TAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATAT-ATGTAATAT
196 TAAAAA-ATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGT--TAG
16058 GTAGT-TTATATTGTAAAGTGTCTATCC-TTTTAT-AAAGTGTCCATACTTTTTTCACTGTGGAA
258 GTAGTGTT-TATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAA
16120 AACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATTTTAATTTAGTAATTATAGGCGTCT
322 AACATTAATTTAAGGTTATC-TTTGAGTGAGTTTTAAGATTTTAATTTAGTAATTATAGGCGTCT
16185 AATGATTTATTTTTACGTTACGATATATATTATTA
386 AATGA-TTATTTTTACGTTA--ATATATATTATTA
16220 TTAAATTAAAAATTCTAAATAATATTT-T-AAATATCAAATAATCAAAT-ATTTTTTGTGCAAAT
1 TTAAATTAAAAATTCTAAATAATATTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAAT
*
16282 GAAATTATTAAATTAATATTGTAGGTGG--AATATGAAACACTATT--AAAAAATTGAAACATAA
66 GAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAA
16343 ATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATA
131 ATT--ATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATA
16408 TAATGTAATA
Statistics
Matches: 577, Mismatches: 7, Indels: 39
0.93 0.01 0.06
Matches are distributed among these distances:
409 57 0.10
410 52 0.09
411 57 0.10
412 70 0.12
413 81 0.14
414 82 0.14
415 8 0.01
416 111 0.19
417 19 0.03
418 1 0.00
419 39 0.07
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (417 bp):
TTAAATTAAAAATTCTAAATAATATTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAAT
GAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAA
ATTATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGG
TAAAAAATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTTAGGTA
GTGTTTATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACA
TTAATTTAAGGTTATCTTTGAGTGAGTTTTAAGATTTTAATTTAGTAATTATAGGCGTCTAATGA
TTATTTTTACGTTAATATATATTATTA
Found at i:18248 original size:10 final size:10
Alignment explanation
Indices: 18235--18263 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
18225 TAAGCTGTAA
18235 TGTGTGTGTC
1 TGTGTGTGTC
18245 TGTGTGTGTC
1 TGTGTGTGTC
18255 TGTGTGTGT
1 TGTGTGTGT
18264 GCGCGCGCGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.07, G:0.41, T:0.52
Consensus pattern (10 bp):
TGTGTGTGTC
Found at i:19753 original size:17 final size:18
Alignment explanation
Indices: 19716--19753 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
19706 TTTTTTTTAT
19716 ATATTATTAAATATAAAA
1 ATATTATTAAATATAAAA
19734 ATATT-TTAAA-ATAAATA
1 ATATTATTAAATATAAA-A
19751 ATA
1 ATA
19754 AAAATAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.26
17 9 0.47
18 5 0.26
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
ATATTATTAAATATAAAA
Found at i:25750 original size:224 final size:224
Alignment explanation
Indices: 25347--25817 Score: 917
Period size: 224 Copynumber: 2.1 Consensus size: 224
25337 ATGGTGATGA
*
25347 TAACT-AATGGATAGGAAAATAATGAGTGGTTCTAAATTCAGTGGACAAGCAAAAAGCTTTCGTC
1 TAACTCAA-GGATTGGAAAATAATGAGTGGTTCTAAATTCAGTGGACAAGCAAAAAGCTTTCGTC
25411 TTAAATGGTGATTAAGACACACTGTAAACATGTGATTAACAATAATTAAGGTTTATCAGACATTG
65 TTAAATGGTGATTAAGACACACTGTAAACATGTGATTAACAATAATTAAGGTTTATCAGACATTG
25476 CATCATTTCAGCAAAACTCAATCATTAATGAGGTAGCAATTCAAATCGATCAATAAACAAGTCGG
130 CATCATTTCAGCAAAACTCAATCATTAATGAGGTAGCAATTCAAATCGATCAATAAACAAGTCGG
25541 GTTATATAATCCAATTTCAATTTGATTAAT
195 GTTATATAATCCAATTTCAATTTGATTAAT
25571 TAACTCAAGGATTGGAAAATAATGAGTGGTTCTAAATTCAGTGGACAAGCAAAAAGCTTTCGTCT
1 TAACTCAAGGATTGGAAAATAATGAGTGGTTCTAAATTCAGTGGACAAGCAAAAAGCTTTCGTCT
25636 TAAATGGTGATTAAGACACACTGTAAACATGTGATTAACAATAATTAAGGTTTATCAGACATTGC
66 TAAATGGTGATTAAGACACACTGTAAACATGTGATTAACAATAATTAAGGTTTATCAGACATTGC
25701 ATCATTTCAGCAAAACTCAATCATTAATGAGGTAGCAATTCAAATCGATCAATAAACAAGTCGGG
131 ATCATTTCAGCAAAACTCAATCATTAATGAGGTAGCAATTCAAATCGATCAATAAACAAGTCGGG
25766 TTATATAATCCAATTTCAATTTGATTAAT
196 TTATATAATCCAATTTCAATTTGATTAAT
25795 TAACTCAAGGATTGGAAAATAAT
1 TAACTCAAGGATTGGAAAATAAT
25818 TGAACAAGAA
Statistics
Matches: 245, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
224 243 0.99
225 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (224 bp):
TAACTCAAGGATTGGAAAATAATGAGTGGTTCTAAATTCAGTGGACAAGCAAAAAGCTTTCGTCT
TAAATGGTGATTAAGACACACTGTAAACATGTGATTAACAATAATTAAGGTTTATCAGACATTGC
ATCATTTCAGCAAAACTCAATCATTAATGAGGTAGCAATTCAAATCGATCAATAAACAAGTCGGG
TTATATAATCCAATTTCAATTTGATTAAT
Found at i:27047 original size:71 final size:71
Alignment explanation
Indices: 26931--27075 Score: 290
Period size: 71 Copynumber: 2.0 Consensus size: 71
26921 CCAGTGCACT
26931 AGGGAAACCAATCTCCATGGACTCTTTCACTGCTTCTAAAACTAGATTGCACTTTGCTAAAGTTT
1 AGGGAAACCAATCTCCATGGACTCTTTCACTGCTTCTAAAACTAGATTGCACTTTGCTAAAGTTT
26996 GTGTTG
66 GTGTTG
27002 AGGGAAACCAATCTCCATGGACTCTTTCACTGCTTCTAAAACTAGATTGCACTTTGCTAAAGTTT
1 AGGGAAACCAATCTCCATGGACTCTTTCACTGCTTCTAAAACTAGATTGCACTTTGCTAAAGTTT
27067 GTGTTG
66 GTGTTG
27073 AGG
1 AGG
27076 TTGATGTTAA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 74 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (71 bp):
AGGGAAACCAATCTCCATGGACTCTTTCACTGCTTCTAAAACTAGATTGCACTTTGCTAAAGTTT
GTGTTG
Found at i:33763 original size:31 final size:31
Alignment explanation
Indices: 33728--33792 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
33718 TCAACCGTTA
*
33728 AAATTATCAGTTTTGGTCAGTTTTAGTACCT
1 AAATTATCAGTTTTGGTCAGTTTTAATACCT
*
33759 AAATTATCAGTTTTGGTCGGTTTTAATACCT
1 AAATTATCAGTTTTGGTCAGTTTTAATACCT
33790 AAA
1 AAA
33793 CTTTTAACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.43
Consensus pattern (31 bp):
AAATTATCAGTTTTGGTCAGTTTTAATACCT
Found at i:42392 original size:21 final size:21
Alignment explanation
Indices: 42337--42402 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
42327 CTACCAAAAT
42337 TTTACCAAACTTTGAAAAACA
1 TTTACCAAACTTTGAAAAACA
**
42358 TTTTTCAAA----G--AAACA
1 TTTACCAAACTTTGAAAAACA
42373 TTTACCAAACTTTGAAAAACA
1 TTTACCAAACTTTGAAAAACA
*
42394 TTTTCCAAA
1 TTTACCAAA
42403 GTTGGTTGCC
Statistics
Matches: 34, Mismatches: 5, Indels: 12
0.67 0.10 0.24
Matches are distributed among these distances:
15 12 0.35
17 1 0.03
19 1 0.03
21 20 0.59
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (21 bp):
TTTACCAAACTTTGAAAAACA
Found at i:43085 original size:2 final size:2
Alignment explanation
Indices: 43078--43105 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
43068 TGGTTAGTAC
43078 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
43106 GATGATATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:56770 original size:18 final size:18
Alignment explanation
Indices: 56747--56788 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
56737 GCAGTATGTC
56747 AACTGCTTCATCTGGAGT
1 AACTGCTTCATCTGGAGT
56765 AACTGCTTCATCTGGAGT
1 AACTGCTTCATCTGGAGT
56783 AACTGC
1 AACTGC
56789 ACCAAGAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (18 bp):
AACTGCTTCATCTGGAGT
Found at i:58125 original size:2 final size:2
Alignment explanation
Indices: 58118--58150 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
58108 TGTTTTCCTA
58118 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
58151 ACGTGATAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:58410 original size:30 final size:30
Alignment explanation
Indices: 58376--58450 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
58366 GTCAAACAAC
*
58376 TTAATTGATTTAAATT-TTAAATTTAATGA-T
1 TTAATTGATTTAAATTCTT-AATTTAA-AATT
**
58406 TTAATTGAAATAAATTCTTAATTTAAAATT
1 TTAATTGATTTAAATTCTTAATTTAAAATT
58436 TTAATTGATTGTAAA
1 TTAATTGATT-TAAA
58451 AAAATAAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
29 1 0.03
30 30 0.81
31 6 0.16
ACGTcount: A:0.43, C:0.01, G:0.07, T:0.49
Consensus pattern (30 bp):
TTAATTGATTTAAATTCTTAATTTAAAATT
Found at i:61230 original size:17 final size:18
Alignment explanation
Indices: 61204--61243 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
61194 TATTATTGAA
*
61204 AATAACTTTTATC-TTTT
1 AATAAATTTTATCATTTT
61221 AATAAATTTTATCAATTTT
1 AATAAATTTTATC-ATTTT
61240 AATA
1 AATA
61244 TGTTCGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 12 0.60
19 8 0.40
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (18 bp):
AATAAATTTTATCATTTT
Found at i:61318 original size:33 final size:32
Alignment explanation
Indices: 61263--61324 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 32
61253 TGCTTTTGGG
*
61263 TCGGGTTAAATTCGGTTTGGGTTGCTTTCAAA
1 TCGGGTTAAATTCGGTTCGGGTTGCTTTCAAA
** *
61295 TCGGGTTAAAATTTTGTTCGGGTTTCTTTC
1 TCGGGTT-AAATTCGGTTCGGGTTGCTTTC
61325 GGTTCGTGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 7 0.28
33 18 0.72
ACGTcount: A:0.16, C:0.13, G:0.26, T:0.45
Consensus pattern (32 bp):
TCGGGTTAAATTCGGTTCGGGTTGCTTTCAAA
Found at i:69661 original size:20 final size:20
Alignment explanation
Indices: 69636--69676 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
69626 TTTTTGAAAT
69636 CAAGTTTTGAAATTACTCCC
1 CAAGTTTTGAAATTACTCCC
69656 CAAGTTTTGAAATTACTCCC
1 CAAGTTTTGAAATTACTCCC
69676 C
1 C
69677 CTTACTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.34
Consensus pattern (20 bp):
CAAGTTTTGAAATTACTCCC
Found at i:78059 original size:13 final size:13
Alignment explanation
Indices: 78041--78077 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
78031 TTTGGTAATC
78041 CCCGCCCCGATTA
1 CCCGCCCCGATTA
78054 CCCGCCCCGATTA
1 CCCGCCCCGATTA
78067 CCCGCCCCGAT
1 CCCGCCCCGAT
78078 AAATATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.14, C:0.57, G:0.16, T:0.14
Consensus pattern (13 bp):
CCCGCCCCGATTA
Found at i:78131 original size:32 final size:33
Alignment explanation
Indices: 78095--78180 Score: 113
Period size: 32 Copynumber: 2.7 Consensus size: 33
78085 AAAAATAATT
*
78095 ATTTATATATATATATA-ATATTAATAAATTTA
1 ATTTAAATATATATATATATATTAATAAATTTA
* * * *
78127 ATTTAAATA-AAAAATATATATTTATATATTTA
1 ATTTAAATATATATATATATATTAATAAATTTA
78159 ATTTAAATATATATATATATAT
1 ATTTAAATATATATATATATAT
78181 ACCCGACCCG
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
31 5 0.11
32 30 0.67
33 10 0.22
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (33 bp):
ATTTAAATATATATATATATATTAATAAATTTA
Found at i:78213 original size:12 final size:12
Alignment explanation
Indices: 78196--78221 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
78186 ACCCGATTCT
78196 CGGCCCAATACC
1 CGGCCCAATACC
78208 CGGCCCAATACC
1 CGGCCCAATACC
78220 CG
1 CG
78222 TTTAAATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.50, G:0.19, T:0.08
Consensus pattern (12 bp):
CGGCCCAATACC
Found at i:81367 original size:47 final size:47
Alignment explanation
Indices: 81313--81408 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
81303 ACAAATGAAG
81313 GTAGTGACAAGTGGAGGTTGACATGCAGTGGACTCCAGCAAACAAGC
1 GTAGTGACAAGTGGAGGTTGACATGCAGTGGACTCCAGCAAACAAGC
81360 GTAGTGACAAGTGGAGGTTGACATGCAGTGGACTCCAGCAAACAAGC
1 GTAGTGACAAGTGGAGGTTGACATGCAGTGGACTCCAGCAAACAAGC
81407 GT
1 GT
81409 TCAATCTCCT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.31, C:0.19, G:0.32, T:0.18
Consensus pattern (47 bp):
GTAGTGACAAGTGGAGGTTGACATGCAGTGGACTCCAGCAAACAAGC
Found at i:86504 original size:13 final size:13
Alignment explanation
Indices: 86488--86531 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
86478 ATTATTATAA
86488 ATAATATTTATTT
1 ATAATATTTATTT
**
86501 ATAAT-TATTATAA
1 ATAATAT-TTATTT
86514 ATAATATTTATTT
1 ATAATATTTATTT
86527 ATAAT
1 ATAAT
86532 TCTTCTTAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 1 0.04
13 23 0.92
14 1 0.04
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
ATAATATTTATTT
Found at i:86507 original size:26 final size:26
Alignment explanation
Indices: 86478--86532 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
86468 TTGATATGGG
86478 ATTATTATAAATAATATTTATTTATA
1 ATTATTATAAATAATATTTATTTATA
86504 ATTATTATAAATAATATTTATTTATA
1 ATTATTATAAATAATATTTATTTATA
86530 ATT
1 ATT
86533 CTTCTTAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (26 bp):
ATTATTATAAATAATATTTATTTATA
Found at i:88505 original size:14 final size:14
Alignment explanation
Indices: 88486--88518 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
88476 ATCCCCAAAA
88486 CTTAAATCA-TAAAT
1 CTTAAA-CACTAAAT
88500 CTTAAACACTAAAT
1 CTTAAACACTAAAT
88514 CTTAA
1 CTTAA
88519 TTTAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 2 0.11
14 16 0.89
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.33
Consensus pattern (14 bp):
CTTAAACACTAAAT
Found at i:89089 original size:2 final size:2
Alignment explanation
Indices: 89082--89170 Score: 178
Period size: 2 Copynumber: 44.5 Consensus size: 2
89072 CACTTCAAAT
89082 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
89124 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
89166 TA TA T
1 TA TA T
89171 TTTAACAAAA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 87 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:89531 original size:23 final size:23
Alignment explanation
Indices: 89484--89531 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
89474 AATAACATAT
**
89484 TATGTAACACTTATATAATGTAA
1 TATGTAACACTTATATAATAAAA
* *
89507 TATGTAGCGCTTATATAATAAAA
1 TATGTAACACTTATATAATAAAA
89530 TA
1 TA
89532 GGCGTTTAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (23 bp):
TATGTAACACTTATATAATAAAA
Found at i:90060 original size:200 final size:198
Alignment explanation
Indices: 89627--90336 Score: 695
Period size: 200 Copynumber: 3.5 Consensus size: 198
89617 TTTTTGAAGT
* * * * * * *
89627 AAACCGATATATTTATACCGGTAACATTGCAAATTTACCTATTATATTATTATTACCGGTTTCGA
1 AAACCGGTATATTTATATCGGTTACATTGAAAATTTACCTATTACATTATAATTATCGGTTTCGA
** * * * * *
89692 TGTTTTTTTAGATCGATATAATTT-TAAATGTATCGACATTTTATGCTTGCACCTGGTTGGGAAT
66 TG-TTTTTGGGATCGATAT-TTTTATAAATGTATCGACACTTTATGCGTGCACCTCGTT-TG--T
* * * * * * *
89756 TCATATTTCATTCTGGA-AAAAAGTATCGACACAAACT-AACAAAGTGTCGATACATTAT-TTAG
126 GC--A-TTCATCCTGGACAATAAGTATCGACACAAATTCCAC-AAGCGTCGATACATTATGCT-G
*
89818 ACATATTCTCTCATA
186 ACATGTT-T-TCATA
* * *
89833 AAACCGGTATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATACTTATGGGTTTCGA
1 AAACCGGTATATTTATATCGGTTACATTGAAAATTTACCTATTACATTATAATTATCGGTTTCGA
** * *
89898 TGTTTCCGGGATCGATATTTTTATAAATGTATCGACACTTTATG-GTTGTACC-C-TTTTTGGCA
66 TGTTTTTGGGATCGATATTTTTATAAATGTATCGACACTTTATGCG-TGCACCTCGTTTGT-GCA
* * * *
89960 TTCATTCTGTACCAA-AAGTATCGACACAAATT-TAGCAAGCGTCGATACTTTATGCTGACCTAT
129 TTCATCCTGGA-CAATAAGTATCGACACAAATTCCA-CAAGCGTCGATACATTATGCTGA-C-AT
*
90023 TTTTATCATA
190 GTTT-TCATA
* *
90033 AAACCGGTATATTTATATCGGTTACATTGTAAATTTACCTAATACATTATAATTATCGGTTTCGA
1 AAACCGGTATATTTATATCGGTTACATTGAAAATTTACCTATTACATTATAATTATCGGTTTCGA
* *
90098 TGTTTTTGTGATCGATACTTTTAATAAATGTATCGACACTTTATGCGTGCACCTCGTTTGTGCAT
66 TGTTTTTGGGATCGATA-TTTTTATAAATGTATCGACACTTTATGCGTGCACCTCGTTTGTGCAT
* *
90163 TCATCCTGGACAATAAGTATCGACACAAATTCCACAAGTGTCGATACATTATGTTGACATGTTTT
130 TCATCCTGGACAATAAGTATCGACACAAATTCCACAAGCGTCGATACATTATGCTGACATGTTTT
90228 C-TA
195 CATA
* ** ** *
90231 ATTAACCGGTATATTTATATCGGTTATATTGGTAATTTACCTATTACATTATAATTATTAGTTTT
1 A--AACCGGTATATTTATATCGGTTACATTGAAAATTTACCTATTACATTATAATTATCGGTTTC
* *
90296 GATGTTTTTTGGG-TCGATACTTGTATAAAATGTATCGACAC
64 GATG-TTTTTGGGATCGATATTTTTAT-AAATGTATCGACAC
90337 ATATTTAGGT
Statistics
Matches: 428, Mismatches: 57, Indels: 44
0.81 0.11 0.08
Matches are distributed among these distances:
198 13 0.03
199 41 0.10
200 170 0.40
201 47 0.11
202 51 0.12
203 7 0.02
204 3 0.01
205 37 0.09
206 59 0.14
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.40
Consensus pattern (198 bp):
AAACCGGTATATTTATATCGGTTACATTGAAAATTTACCTATTACATTATAATTATCGGTTTCGA
TGTTTTTGGGATCGATATTTTTATAAATGTATCGACACTTTATGCGTGCACCTCGTTTGTGCATT
CATCCTGGACAATAAGTATCGACACAAATTCCACAAGCGTCGATACATTATGCTGACATGTTTTC
ATA
Found at i:93084 original size:177 final size:177
Alignment explanation
Indices: 92788--93143 Score: 570
Period size: 177 Copynumber: 2.0 Consensus size: 177
92778 ATATTAAAAA
* * *
92788 ATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTATTTGAAAATGTAT
1 ATTACCTATTACATTATAATTATGGGTTTCGATATTTTTGGGATCAACACTATTTGAAAATGTAT
* * * *
92853 CGACACTTTGTGCGTTCATCCTTTTTGGCATCCATTCTGGACAAAAAGTATCGACACAA-ATTTA
66 CAACACTTTATGCGTTCACCCTTTTTGGCATCCATTCTGGACAAAAAGTATCGACACAATATTAA
*
92917 TATAGTGTCGATACATGTTATAGACCTATTATCTCATAAAACCGGTAT
131 GA-AGTGTCGATACATGTTATAGACCTATTATCTCATAAAACCGGTAT
* *
92965 ATTACCTATTACATTATAATTATGGGTTTCGATATTTTTGGGATCAACACTTTTTGAATATGTAT
1 ATTACCTATTACATTATAATTATGGGTTTCGATATTTTTGGGATCAACACTATTTGAAAATGTAT
* * *
93030 CAACACTTTATGCGTTCACCCTTTTTGGCATCTATTTTGGACAAAAATTATCGACACAATATTAA
66 CAACACTTTATGCGTTCACCCTTTTTGGCATCCATTCTGGACAAAAAGTATCGACACAATATTAA
*
93095 GAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAAACCGGTAT
131 GAAGTGTCGATACATGTTATAGACCTATTATCTCATAAAACCGGTAT
93142 AT
1 AT
93144 GTATACCGGT
Statistics
Matches: 164, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
177 159 0.97
178 5 0.03
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.38
Consensus pattern (177 bp):
ATTACCTATTACATTATAATTATGGGTTTCGATATTTTTGGGATCAACACTATTTGAAAATGTAT
CAACACTTTATGCGTTCACCCTTTTTGGCATCCATTCTGGACAAAAAGTATCGACACAATATTAA
GAAGTGTCGATACATGTTATAGACCTATTATCTCATAAAACCGGTAT
Found at i:96180 original size:24 final size:25
Alignment explanation
Indices: 96153--96206 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
96143 ATATGTAGTT
*
96153 CTTCGGGACAAA-TTCTACGCGGTC
1 CTTCGGGACAAATTTCTACGCGGTA
* *
96177 CTTCGGGATAAATTTCTATGCGGTA
1 CTTCGGGACAAATTTCTACGCGGTA
96202 CTTCG
1 CTTCG
96207 AGAATGCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (25 bp):
CTTCGGGACAAATTTCTACGCGGTA
Found at i:98769 original size:6 final size:6
Alignment explanation
Indices: 98758--98797 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
98748 GTTTGGATCG
* * *
98758 TCATCA TCATCA TCATCT TCATCG TCATCT TCATCT TCAT
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCAT
98798 TGACCGTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.23, C:0.33, G:0.03, T:0.42
Consensus pattern (6 bp):
TCATCT
Found at i:100641 original size:21 final size:21
Alignment explanation
Indices: 100611--100663 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
100601 TGTTTCTGGG
100611 ATCGATACTTTTTATAAATAT
1 ATCGATACTTTTTATAAATAT
*
100632 ATCGACACTTTTTATAAATAT
1 ATCGATACTTTTTATAAATAT
100653 ATCGATACTTT
1 ATCGATACTTT
100664 ATGGTTGCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (21 bp):
ATCGATACTTTTTATAAATAT
Found at i:100802 original size:221 final size:218
Alignment explanation
Indices: 100409--101259 Score: 1053
Period size: 200 Copynumber: 4.0 Consensus size: 218
100399 CGATTTTCTG
* * *
100409 GGATCGATACTTTTTATAAATGGATCGATACTTTATAGTTGCACTCTTTTTGGCATTCATTATGG
1 GGATCGACACTTTTTATAAAT-TATCGATACTTTAT-GTTGCACTCTTTTTTGCATTCATTATGG
*
100474 ACCAAAAGTATCGATACAAAATTAAAAAGTGTCGATACATGTTGTAAACATATTCTCTCGTAAAA
64 ACCAAAAGTATCGA-ACAAAATTAAAAAGTGTCGATACATGTTGTAGACATATTCTCTCGTAAAA
* * *
100539 CCGGTAAATTTATACTGGTTACATTAAAAAATTACCTATTACATTATACTTATGGGTTTCGATGT
128 CCGATAAATTTATACCGGTTACATTAAAAATTTACCTATTACATTATACTTATGGGTTTCGATGT
100604 TTCTGGGATCGATACTTTTTATAAAT
193 TTCTGGGATCGATACTTTTTATAAAT
** * *
100630 ATATCGACACTTTTTATAAATATATCGATACTTTATGGTTGCACCCTTTTTTGCATTCATTCTGG
1 GGATCGACACTTTTTATAAAT-TATCGATACTTTAT-GTTGCACTCTTTTTTGCATTCATTATGG
*
100695 ACCAAAAGTATCGACACAAAATTAAAAAG-GTTCGATACATGTTGTAGACCTATTCTCTCGTAAA
64 ACCAAAAGTATCGA-ACAAAATTAAAAAGTG-TCGATACATGTTGTAGACATATTCTCTCGTAAA
* *
100759 ACCGATACATTTATACCGGTTACATTAAAAATTTACTTATTACATTATACTTATGGGTTTCGATG
127 ACCGATAAATTTATACCGGTTACATTAAAAATTTACCTATTACATTATACTTATGGGTTTCGATG
*
100824 TTTCTTGGATCGATACTTTTTATAAAT
192 TTTCTGGGATCGATACTTTTTATAAAT
* * *
100851 GGATCGACAC------T---TTAT-G---------GTTGCACCCTTTTTGGCATTCATTTTGGAC
1 GGATCGACACTTTTTATAAATTATCGATACTTTATGTTGCACTCTTTTTTGCATTCATTATGGAC
*
100897 CAAAAGTATCGACAAAAAATTAAAAAGTGTCGATACATGTTGTAGACATATTCTCTCGTAAAACC
66 CAAAAGTATCGA-ACAAAATTAAAAAGTGTCGATACATGTTGTAGACATATTCTCTCGTAAAACC
* * *
100962 GATAAATTTATACCGGTTACATTGAAAATTTACCTATTGCATTATACTTATGGGTTTTGATGTTT
130 GATAAATTTATACCGGTTACATTAAAAATTTACCTATTACATTATACTTATGGGTTTCGATGTTT
*
101027 TTGGGATCGATACTTTTTATAAAT
195 CTGGGATCGATACTTTTTATAAAT
* * * *
101051 GGATCGACAC------T---TTAT-G---------GTTGCACCCTTTTTGGCATTCATTCTGAAC
1 GGATCGACACTTTTTATAAATTATCGATACTTTATGTTGCACTCTTTTTTGCATTCATTATGGAC
*
101097 CAAAAGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACC
66 CAAAAGTATCGA-ACAAAATTAAAAAGTGTCGATACATGTTGTAGACATATTCTCTCGTAAAACC
* *
101162 GGTAAATTTATACCGGTTACATTGAAAAA-TTACCTATTGCATTATACTTATGGGTTTCGATGTT
130 GATAAATTTATACCGGTTACATT-AAAAATTTACCTATTACATTATACTTATGGGTTTCGATGTT
*
101226 TCTGGGATCGATACTTTTTATATAT
194 TCTGGGATCGATACTTTTTATAAAT
101251 GGATCGACA
1 GGATCGACA
101260 TATAAGCTTA
Statistics
Matches: 587, Mismatches: 40, Indels: 27
0.90 0.06 0.04
Matches are distributed among these distances:
200 366 0.62
201 5 0.01
210 1 0.00
211 3 0.01
212 1 0.00
215 1 0.00
220 1 0.00
221 209 0.36
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.37
Consensus pattern (218 bp):
GGATCGACACTTTTTATAAATTATCGATACTTTATGTTGCACTCTTTTTTGCATTCATTATGGAC
CAAAAGTATCGAACAAAATTAAAAAGTGTCGATACATGTTGTAGACATATTCTCTCGTAAAACCG
ATAAATTTATACCGGTTACATTAAAAATTTACCTATTACATTATACTTATGGGTTTCGATGTTTC
TGGGATCGATACTTTTTATAAAT
Found at i:100981 original size:200 final size:200
Alignment explanation
Indices: 100632--101259 Score: 1055
Period size: 200 Copynumber: 3.1 Consensus size: 200
100622 TTATAAATAT
* ** * *
100632 ATCGACACTTTTTATAAATATATCGATACTTTATGGTTGCACCCTTTTTTGCATTCATTCTGGAC
1 ATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGGAC
100697 CAAAAGTATCGACACAAAATTAAAAAG-GTTCGATACATGTTGTAGACCTATTCTCTCGTAAAAC
66 CAAAAGTATCGACACAAAATTAAAAAGTG-TCGATACATGTTGTAGACCTATTCTCTCGTAAAAC
* * *
100761 CGATACATTTATACCGGTTACATTAAAAATTTACTTATTACATTATACTTATGGGTTTCGATGTT
130 CGATAAATTTATACCGGTTACATTAAAAATTTACCTATTGCATTATACTTATGGGTTTCGATGTT
100826 TCTTGG
195 TCTTGG
*
100832 ATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTTTGGAC
1 ATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGGAC
* *
100897 CAAAAGTATCGACAAAAAATTAAAAAGTGTCGATACATGTTGTAGACATATTCTCTCGTAAAACC
66 CAAAAGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACC
* *
100962 GATAAATTTATACCGGTTACATTGAAAATTTACCTATTGCATTATACTTATGGGTTTTGATGTTT
131 GATAAATTTATACCGGTTACATTAAAAATTTACCTATTGCATTATACTTATGGGTTTCGATGTTT
101027 -TTGGG
196 CTT-GG
*
101032 ATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGAAC
1 ATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGGAC
101097 CAAAAGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACC
66 CAAAAGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACC
*
101162 GGTAAATTTATACCGGTTACATTGAAAAA-TTACCTATTGCATTATACTTATGGGTTTCGATGTT
131 GATAAATTTATACCGGTTACATT-AAAAATTTACCTATTGCATTATACTTATGGGTTTCGATGTT
*
101226 TCTGGG
195 TCTTGG
*
101232 ATCGATACTTTTTATATATGGATCGACA
1 ATCGATACTTTTTATAAATGGATCGACA
101260 TATAAGCTTA
Statistics
Matches: 402, Mismatches: 22, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
199 2 0.00
200 394 0.98
201 6 0.01
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (200 bp):
ATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGGAC
CAAAAGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACC
GATAAATTTATACCGGTTACATTAAAAATTTACCTATTGCATTATACTTATGGGTTTCGATGTTT
CTTGG
Found at i:101149 original size:400 final size:405
Alignment explanation
Indices: 100281--101259 Score: 1488
Period size: 421 Copynumber: 2.4 Consensus size: 405
100271 TATTTAAATT
*
100281 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACCGGTA
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGGTA
* * *
100346 TATTTATACCGTTTACATTGAAAAATTACCTATTACATTATACTTATGTGTTTCGAT-TTTCTGG
66 AATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTCTGG
* *
100410 GATCGATACTTTTTATAAATGGATCGATACTTTATAGTTGCACTCTTTTTGGCATTCATTATGGA
131 GATCGATACTTTTTATAAATGGATCGACACTTTATAGTTGCACCCTTTTTGGCATTCATTATGGA
* *
100475 CCAAAAGTATCGATACAAAATTAAAAAGTGTCGATACATGTTGTAAACATATTCTCTCGTAAAAC
196 CCAAAAGTATCGACAAAAAATTAAAAAGTGTCGATACATGTTGTAAACATATTCTCTCGTAAAAC
* *
100540 CGGTAAATTTATACTGGTTACATTAAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTT
261 CGATAAATTTATACCGGTTACATTAAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTT
* *
100605 TCTGGGATCGATACTTTTTATAAATATATCGACACTTTTTATAAATATATCGATACTTTATGGTT
326 TCTGGGATCGATACTTTTTAT-AATATATCG---------------AGATCGACACTTTATGGTT
* *
100670 GCACCCTTTTTTGCATTCATTCTGGACCAAA
375 GCACCCTTTTTGGCATTCATTCTGAACCAAA
*
100701 AGTATCGACACAAAATTAAAAAG-GTTCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGAT
1 AGTATCGACACAAAATTAAAAAGTG-TCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGGT
* *
100765 ACATTTATACCGGTTACATT-AAAAATTTACTTATTACATTATACTTATGGGTTTCGATGTTTCT
65 AAATTTATACCGGTTACATTGAAAAA-TTACCTATTACATTATACTTATGGGTTTCGATGTTTCT
* * *
100829 TGGATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTTTG
129 GGGATCGATACTTTTTATAAATGGATCGACACTTTATAGTTGCACCCTTTTTGGCATTCATTATG
*
100894 GACCAAAAGTATCGACAAAAAATTAAAAAGTGTCGATACATGTTGTAGACATATTCTCTCGTAAA
194 GACCAAAAGTATCGACAAAAAATTAAAAAGTGTCGATACATGTTGTAAACATATTCTCTCGTAAA
* * * *
100959 ACCGATAAATTTATACCGGTTACATTGAAAATTTACCTATTGCATTATACTTATGGGTTTTGATG
259 ACCGATAAATTTATACCGGTTACATTAAAAAATTACCTATTACATTATACTTATGGGTTTCGATG
*
101024 TTTTTGGGATCGATACTTTTTAT-A-A-AT-G-GATCGACACTTTATGGTTGCACCCTTTTTGGC
324 TTTCTGGGATCGATACTTTTTATAATATATCGAGATCGACACTTTATGGTTGCACCCTTTTTGGC
101084 ATTCATTCTGAACCAAA
389 ATTCATTCTGAACCAAA
101101 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGGTA
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGGTA
*
101166 AATTTATACCGGTTACATTGAAAAATTACCTATTGCATTATACTTATGGGTTTCGATGTTTCTGG
66 AATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTCTGG
*
101231 GATCGATACTTTTTATATATGGATCGACA
131 GATCGATACTTTTTATAAATGGATCGACA
101260 TATAAGCTTA
Statistics
Matches: 523, Mismatches: 31, Indels: 30
0.90 0.05 0.05
Matches are distributed among these distances:
400 190 0.36
401 6 0.01
416 1 0.00
417 2 0.00
418 1 0.00
419 7 0.01
420 108 0.21
421 208 0.40
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (405 bp):
AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGGTA
AATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTCTGG
GATCGATACTTTTTATAAATGGATCGACACTTTATAGTTGCACCCTTTTTGGCATTCATTATGGA
CCAAAAGTATCGACAAAAAATTAAAAAGTGTCGATACATGTTGTAAACATATTCTCTCGTAAAAC
CGATAAATTTATACCGGTTACATTAAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTT
TCTGGGATCGATACTTTTTATAATATATCGAGATCGACACTTTATGGTTGCACCCTTTTTGGCAT
TCATTCTGAACCAAA
Found at i:101526 original size:19 final size:19
Alignment explanation
Indices: 101502--101550 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
101492 TTACATTCAC
101502 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
101521 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
*
101540 ATACAACATTA
1 ATACAAAATTA
101551 ACCCTACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.53, C:0.12, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:102134 original size:4 final size:4
Alignment explanation
Indices: 102125--102293 Score: 338
Period size: 4 Copynumber: 42.2 Consensus size: 4
102115 AATGCCCTTT
102125 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
102173 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
102221 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
102269 CATA CATA CATA CATA CATA CATA C
1 CATA CATA CATA CATA CATA CATA C
102294 CAATCTCTTA
Statistics
Matches: 165, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 165 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:103047 original size:33 final size:33
Alignment explanation
Indices: 103010--103075 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
103000 CATCTTAAGA
* *
103010 TCACCCCTTAATACCTCAACTTCTTTCACCACT
1 TCACCCCTCAACACCTCAACTTCTTTCACCACT
*
103043 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCTCAACTTCTTTCACCACT
103076 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.45, G:0.00, T:0.32
Consensus pattern (33 bp):
TCACCCCTCAACACCTCAACTTCTTTCACCACT
Found at i:105592 original size:20 final size:19
Alignment explanation
Indices: 105547--105604 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 19
105537 CCGGTAGCAC
*
105547 TTTACTGGTTTTATCATTT
1 TTTACCGGTTTTATCATTT
* *
105566 TGATACCGGTTTTTTCATATT
1 T-TTACCGGTTTTATCAT-TT
* *
105587 TTTACCTGTTATATCATT
1 TTTACCGGTTTTATCATT
105605 GTGGATCGAT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
19 2 0.07
20 25 0.83
21 3 0.10
ACGTcount: A:0.19, C:0.14, G:0.10, T:0.57
Consensus pattern (19 bp):
TTTACCGGTTTTATCATTT
Found at i:105718 original size:182 final size:182
Alignment explanation
Indices: 105391--105804 Score: 620
Period size: 182 Copynumber: 2.3 Consensus size: 182
105381 GCGCTTTACT
*
105391 GGTTTTATCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAGTATCGACAC
1 GGTTTTATCATATTTTTACCTGTTATATCATTGTGGATCGATACATTTTTATAAAGTATCGACAC
105456 TTTATAAGCGTTAAAACTGTTTCTCTTTTAAATTCACAAAGTGTCGATACTTATATTAAAGTACC
66 TTTATAAGCGTTAAAACTGTTTCTCTTTTAAATTCACAAAGTGTCGATACTTATATTAAAGTACC
* * * *
105521 GACACTTTAAATATATCCGGTAGCA-CTTTACTGGTTTTATCATTTTGAT-ACC
131 GACACGTTAAATATATCCGGTAG-AGCTTTACCGGTATTATC-TTTTCATAACC
*
105573 GGTTTTTTCATATTTTTACCTGTTATATCATTGTGGATCGATACATTTTTATAAAGTATCGACAC
1 GGTTTTATCATATTTTTACCTGTTATATCATTGTGGATCGATACATTTTTATAAAGTATCGACAC
* * * *
105638 TTTATAGGCGTTAAAACT-TATTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATTAGAGTAT
66 TTTATAAGCGTTAAAACTGT-TTCTCTTTTAAATTCACAAAGTGTCGATACTTATATTAAAGTAC
* * *
105702 CGACACGTTCAATATATCTGGTAGAGCTTTACCGGTATTGTCTTTTCATAACC
130 CGACACGTTAAATATATCCGGTAGAGCTTTACCGGTATTATCTTTTCATAACC
* * *
105755 GGTTTTATCATATTTTTACTTGTTATATTGA-TATGGATCGATACATTTTT
1 GGTTTTATCATATTTTTACCTGTTATA-TCATTGTGGATCGATACATTTTT
105805 TAATTTGGAT
Statistics
Matches: 211, Mismatches: 17, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
181 8 0.04
182 201 0.95
183 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.43
Consensus pattern (182 bp):
GGTTTTATCATATTTTTACCTGTTATATCATTGTGGATCGATACATTTTTATAAAGTATCGACAC
TTTATAAGCGTTAAAACTGTTTCTCTTTTAAATTCACAAAGTGTCGATACTTATATTAAAGTACC
GACACGTTAAATATATCCGGTAGAGCTTTACCGGTATTATCTTTTCATAACC
Found at i:108226 original size:8 final size:9
Alignment explanation
Indices: 108205--108238 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
108195 TGTACCTATT
108205 TTTTTCTTC
1 TTTTTCTTC
108214 TTTTTCTTC
1 TTTTTCTTC
*
108223 TTTTTCCTC
1 TTTTTCTTC
108232 TGTTTTC
1 T-TTTTC
108239 CCTTTTCCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 18 0.78
10 5 0.22
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.74
Consensus pattern (9 bp):
TTTTTCTTC
Found at i:117156 original size:28 final size:26
Alignment explanation
Indices: 117123--117201 Score: 70
Period size: 28 Copynumber: 3.0 Consensus size: 26
117113 ATAATAAGCA
117123 AATATGTAACAACTTTATAAAATTTT
1 AATATGTAACAACTTTATAAAATTTT
* **
117149 ATATTATGGGATGAA-TTTATAAAATTTT
1 A-A-TAT-GTAACAACTTTATAAAATTTT
* * *
117177 AAAATGTAACGACTTTATAGAATTT
1 AATATGTAACAACTTTATAAAATTT
117202 GAGAAACAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
25 3 0.08
26 14 0.35
27 2 0.05
28 17 0.43
29 4 0.10
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.42
Consensus pattern (26 bp):
AATATGTAACAACTTTATAAAATTTT
Found at i:117744 original size:24 final size:24
Alignment explanation
Indices: 117716--117761 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
117706 CTTTAAATAG
*
117716 TAAATCCATAATA-ATCAGTTCGTT
1 TAAATCCACAA-ACATCAGTTCGTT
*
117740 TAAATTCACAAACATCAGTTCG
1 TAAATCCACAAACATCAGTTCG
117762 GTTATGGCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (24 bp):
TAAATCCACAAACATCAGTTCGTT
Found at i:118764 original size:49 final size:49
Alignment explanation
Indices: 118710--118808 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
118700 GACGTGTTAT
118710 TATTAATGTTTGATTACCATACCAAATATCTCTTAATGTGAATATTTTG
1 TATTAATGTTTGATTACCATACCAAATATCTCTTAATGTGAATATTTTG
118759 TATTAATGTTTGATTACCATACCAAATATCTCTTAATGTGAATATTTTG
1 TATTAATGTTTGATTACCATACCAAATATCTCTTAATGTGAATATTTTG
118808 T
1 T
118809 CTAAAGATAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.45
Consensus pattern (49 bp):
TATTAATGTTTGATTACCATACCAAATATCTCTTAATGTGAATATTTTG
Found at i:119619 original size:13 final size:13
Alignment explanation
Indices: 119601--119626 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
119591 ACTTTGCACT
119601 AACAATTTCCACC
1 AACAATTTCCACC
119614 AACAATTTCCACC
1 AACAATTTCCACC
119627 TCTCATGGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.23
Consensus pattern (13 bp):
AACAATTTCCACC
Found at i:124281 original size:16 final size:16
Alignment explanation
Indices: 124257--124287 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
124247 CTTCTAATTT
*
124257 TTTTTGAGTTCAAGTC
1 TTTTCGAGTTCAAGTC
124273 TTTTCGAGTTCAAGT
1 TTTTCGAGTTCAAGT
124288 TTCAATATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.13, G:0.19, T:0.48
Consensus pattern (16 bp):
TTTTCGAGTTCAAGTC
Found at i:124519 original size:18 final size:17
Alignment explanation
Indices: 124487--124520 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
124477 TCAGCCGGTC
124487 CGGTTTGAACGGTTCAG
1 CGGTTTGAACGGTTCAG
*
124504 CGGTTCTGACCGGTTCA
1 CGGTT-TGAACGGTTCA
124521 CTAGTAGCGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.15, C:0.24, G:0.32, T:0.29
Consensus pattern (17 bp):
CGGTTTGAACGGTTCAG
Found at i:124890 original size:21 final size:21
Alignment explanation
Indices: 124864--124958 Score: 111
Period size: 21 Copynumber: 4.6 Consensus size: 21
124854 GCATTGCATT
124864 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
*
124885 TCGCGTTGCGATAGTTAAAAA
1 TCGCGTTGCGATAGTTGAAAA
* ** **
124906 TCGCGTTGCGAT-TTTCCATT
1 TCGCGTTGCGATAGTTGAAAA
124926 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
* *
124947 TCGAGTCGCGAT
1 TCGCGTTGCGAT
124959 TTTCCATTTC
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 15 0.25
21 45 0.75
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (21 bp):
TCGCGTTGCGATAGTTGAAAA
Found at i:124931 original size:20 final size:20
Alignment explanation
Indices: 124906--124978 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
124896 TAGTTAAAAA
124906 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
* ** **
124926 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGAT-TTTCCATT
* *
124947 TCGAGTCGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
124967 TCGCGTTGCGAT
1 TCGCGTTGCGAT
124979 AGTCTACAGT
Statistics
Matches: 38, Mismatches: 14, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
20 25 0.66
21 13 0.34
ACGTcount: A:0.16, C:0.22, G:0.25, T:0.37
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCATT
Found at i:124937 original size:41 final size:41
Alignment explanation
Indices: 124885--124981 Score: 167
Period size: 41 Copynumber: 2.4 Consensus size: 41
124875 TAGTTGAAAA
* *
124885 TCGCGTTGCGATAGTTAAAAATCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATAGTTAAAAATCGAGTCGCGATTTTCCATT
*
124926 TCGCGTTGCGATAGTTGAAAATCGAGTCGCGATTTTCCATT
1 TCGCGTTGCGATAGTTAAAAATCGAGTCGCGATTTTCCATT
124967 TCGCGTTGCGATAGT
1 TCGCGTTGCGATAGT
124982 CTACAGTTGT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.35
Consensus pattern (41 bp):
TCGCGTTGCGATAGTTAAAAATCGAGTCGCGATTTTCCATT
Found at i:125024 original size:13 final size:13
Alignment explanation
Indices: 125006--125031 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
124996 ACGATTTTCC
125006 AAATTCGTTGCGA
1 AAATTCGTTGCGA
125019 AAATTCGTTGCGA
1 AAATTCGTTGCGA
125032 TAGTTAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
AAATTCGTTGCGA
Found at i:125643 original size:6 final size:6
Alignment explanation
Indices: 125632--125685 Score: 108
Period size: 6 Copynumber: 9.0 Consensus size: 6
125622 TCACGTCTCG
125632 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
125680 GGTCGT
1 GGTCGT
125686 AATGGTAATG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 48 1.00
ACGTcount: A:0.00, C:0.17, G:0.50, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:125858 original size:25 final size:24
Alignment explanation
Indices: 125830--125876 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
125820 AGACTATCGC
125830 GAAAATCGCAACGACAACTGTAGTT
1 GAAAATCGCAACG-CAACTGTAGTT
*
125855 GAAAATCGCAACGCGACTGTAG
1 GAAAATCGCAACGCAACTGTAG
125877 ACTATCGCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.17
Consensus pattern (24 bp):
GAAAATCGCAACGCAACTGTAGTT
Found at i:125900 original size:41 final size:41
Alignment explanation
Indices: 125855--125936 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
125845 AACTGTAGTT
125855 GAAAATCGCAACGCGACTGT-AGACTATCGCAACGCGAAATG
1 GAAAATCGCAACGCGACTGTCA-ACTATCGCAACGCGAAATG
* *
125896 GAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAATG
1 GAAAATCGCAACGCGACTGTCAACTATCGCAACGCGAAATG
125937 CAACGCGAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 37 0.97
42 1 0.03
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (41 bp):
GAAAATCGCAACGCGACTGTCAACTATCGCAACGCGAAATG
Found at i:125940 original size:21 final size:21
Alignment explanation
Indices: 125859--125940 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
125849 GTAGTTGAAA
* *
125859 ATCGCAACGCG-ACTGTAGACT
1 ATCGCAACGCGAAATGCA-ACT
* *
125880 ATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGAAATGCAACT
** *
125900 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGCAACT
125921 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATGCAAC
125941 GCGAATTTGC
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
20 15 0.31
21 29 0.60
22 4 0.08
ACGTcount: A:0.35, C:0.27, G:0.21, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATGCAACT
Found at i:128263 original size:49 final size:49
Alignment explanation
Indices: 128187--128286 Score: 182
Period size: 49 Copynumber: 2.0 Consensus size: 49
128177 TATTTTTTTT
* *
128187 AACAATTTAATTATTGTTTTTGCGGGAGTTTAATTTTTAAATGACACAA
1 AACAATGTAATTATTGTTTTTGAGGGAGTTTAATTTTTAAATGACACAA
128236 AACAATGTAATTATTGTTTTTGAGGGAGTTTAATTTTTAAATGACACAA
1 AACAATGTAATTATTGTTTTTGAGGGAGTTTAATTTTTAAATGACACAA
128285 AA
1 AA
128287 ATCTACTTAC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (49 bp):
AACAATGTAATTATTGTTTTTGAGGGAGTTTAATTTTTAAATGACACAA
Found at i:129935 original size:23 final size:23
Alignment explanation
Indices: 129883--129942 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
129873 GTTATGTACT
* * *
129883 GATATAATCACATTGACCGTTTC
1 GATACAATCACATTGAACGTATC
* *
129906 AAGACAATCACATTGAACGTATC
1 GATACAATCACATTGAACGTATC
*
129929 GATACAACCACATT
1 GATACAATCACATT
129943 AATGCATGAG
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (23 bp):
GATACAATCACATTGAACGTATC
Found at i:131157 original size:29 final size:29
Alignment explanation
Indices: 131132--131200 Score: 138
Period size: 29 Copynumber: 2.4 Consensus size: 29
131122 TATATTTACA
131132 GATCTAACACCGGTCAGACTATATTTCTC
1 GATCTAACACCGGTCAGACTATATTTCTC
131161 GATCTAACACCGGTCAGACTATATTTCTC
1 GATCTAACACCGGTCAGACTATATTTCTC
131190 GATCTAACACC
1 GATCTAACACC
131201 CGTAGAAGTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
GATCTAACACCGGTCAGACTATATTTCTC
Found at i:131283 original size:51 final size:51
Alignment explanation
Indices: 131228--131338 Score: 143
Period size: 51 Copynumber: 2.2 Consensus size: 51
131218 ACCCCTGAAA
* * * *
131228 CGCGCTATATGTTGA-GTTGGCGCTACGTGGGGTATAACGCGCCCCCTACAC
1 CGCGCTATATGCTGACATGGGCGCCACGT-GGGTATAACGCGCCCCCTACAC
* *
131279 CGCGCTATATGCTGACATGGGCGCCACGTGGGTATAGCGCGCCCCCTGCAC
1 CGCGCTATATGCTGACATGGGCGCCACGTGGGTATAACGCGCCCCCTACAC
*
131330 TGCGCTATA
1 CGCGCTATA
131339 CGTATGTGTG
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
51 42 0.81
52 10 0.19
ACGTcount: A:0.17, C:0.32, G:0.30, T:0.22
Consensus pattern (51 bp):
CGCGCTATATGCTGACATGGGCGCCACGTGGGTATAACGCGCCCCCTACAC
Found at i:140579 original size:25 final size:25
Alignment explanation
Indices: 140507--140580 Score: 69
Period size: 25 Copynumber: 2.9 Consensus size: 25
140497 TTAGTCATTT
* * *
140507 ATTTTATTGATAATATTTATTATAAA
1 ATTTTATTTATATTA-TTAATATAAA
** *
140533 ATTTTATTTATACTCGTT-ATATTAA
1 ATTTTATTTATA-TTATTAATATAAA
140558 ATTTTATTTATATTATTAATATA
1 ATTTTATTTATATTATTAATATA
140581 TTAAAATTAA
Statistics
Matches: 37, Mismatches: 9, Indels: 5
0.73 0.18 0.10
Matches are distributed among these distances:
24 3 0.08
25 21 0.57
26 13 0.35
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (25 bp):
ATTTTATTTATATTATTAATATAAA
Found at i:140911 original size:2 final size:2
Alignment explanation
Indices: 140900--140941 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
140890 TTTAAGAAGC
140900 GA GA -A GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
140941 G
1 G
140942 CGCAAGCGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:149432 original size:29 final size:29
Alignment explanation
Indices: 149390--149460 Score: 142
Period size: 29 Copynumber: 2.4 Consensus size: 29
149380 TCCCGGGGGT
149390 AGGTCGCCATGCACGCACAGCGACCTACC
1 AGGTCGCCATGCACGCACAGCGACCTACC
149419 AGGTCGCCATGCACGCACAGCGACCTACC
1 AGGTCGCCATGCACGCACAGCGACCTACC
149448 AGGTCGCCATGCA
1 AGGTCGCCATGCA
149461 GTCCATGCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.24, C:0.39, G:0.25, T:0.11
Consensus pattern (29 bp):
AGGTCGCCATGCACGCACAGCGACCTACC
Found at i:149701 original size:13 final size:13
Alignment explanation
Indices: 149683--149708 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
149673 TGGGTCTGGT
149683 GGCAGCATGGCAA
1 GGCAGCATGGCAA
149696 GGCAGCATGGCAA
1 GGCAGCATGGCAA
149709 CGTGGGTAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.38, T:0.08
Consensus pattern (13 bp):
GGCAGCATGGCAA
Found at i:149857 original size:12 final size:11
Alignment explanation
Indices: 149837--149872 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
149827 GAAATCAGCT
149837 GCATTATTGCA
1 GCATTATTGCA
*
149848 GCACTTATTGCT
1 GCA-TTATTGCA
149860 GCATTATTGCA
1 GCATTATTGCA
149871 GC
1 GC
149873 CCGTGTACGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.36
Consensus pattern (11 bp):
GCATTATTGCA
Found at i:150221 original size:28 final size:27
Alignment explanation
Indices: 150182--150234 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
150172 ATATTAAAAA
150182 AATAATTAATTAGTGTGTTAGTTAGTCT
1 AATAATTAATTAGTGTG-TAGTTAGTCT
* *
150210 AATATTTAATTAGTTTGTAGTTAGT
1 AATAATTAATTAGTGTGTAGTTAGT
150235 TAAATAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.32, C:0.02, G:0.17, T:0.49
Consensus pattern (27 bp):
AATAATTAATTAGTGTGTAGTTAGTCT
Found at i:150240 original size:27 final size:29
Alignment explanation
Indices: 150181--150245 Score: 82
Period size: 27 Copynumber: 2.3 Consensus size: 29
150171 TATATTAAAA
150181 AAATAATTAATTAGTGTGTTAGTTAGTCT
1 AAATAATTAATTAGTGTGTTAGTTAGTCT
* *
150210 -AATATTTAATTAGTTTG-TAGTTAGT-T
1 AAATAATTAATTAGTGTGTTAGTTAGTCT
*
150236 AAATAGTTAA
1 AAATAATTAA
150246 GTTATATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 1 0.03
27 16 0.50
28 15 0.47
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (29 bp):
AAATAATTAATTAGTGTGTTAGTTAGTCT
Found at i:150468 original size:21 final size:21
Alignment explanation
Indices: 150443--150482 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
150433 GTTAATTAGT
150443 TTGTTAGTTTAAGTTATATTA
1 TTGTTAGTTTAAGTTATATTA
150464 TTGTTAGTTTAAGTTATAT
1 TTGTTAGTTTAAGTTATAT
150483 CATATAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (21 bp):
TTGTTAGTTTAAGTTATATTA
Found at i:150711 original size:29 final size:30
Alignment explanation
Indices: 150663--150788 Score: 103
Period size: 30 Copynumber: 4.4 Consensus size: 30
150653 ATTAGTTAAT
* * *
150663 TAGTTTTTTAGTAGTAAATTATAATTAAA-AA
1 TAGTTTATTAGT-TTAATTTAT-ATTAAAGAA
150694 TCA-TTTATTAGTTTAATTTATATTAAAGAA
1 T-AGTTTATTAGTTTAATTTATATTAAAGAA
*
150724 TAGTTTATTAG-TTAACGTTATATTAAAGAA
1 TAGTTTATTAGTTTAA-TTTATATTAAAGAA
150754 TAG-TTA--A----AA-TTATATTAAAGAA
1 TAGTTTATTAGTTTAATTTATATTAAAGAA
150776 TAGTTTATTAGTT
1 TAGTTTATTAGTT
150789 GTTTAAGGGA
Statistics
Matches: 81, Mismatches: 4, Indels: 23
0.75 0.04 0.21
Matches are distributed among these distances:
22 16 0.20
23 3 0.04
24 2 0.02
25 1 0.01
27 1 0.01
29 14 0.17
30 34 0.42
31 9 0.11
32 1 0.01
ACGTcount: A:0.42, C:0.02, G:0.10, T:0.46
Consensus pattern (30 bp):
TAGTTTATTAGTTTAATTTATATTAAAGAA
Found at i:150731 original size:30 final size:29
Alignment explanation
Indices: 150679--150788 Score: 105
Period size: 30 Copynumber: 4.0 Consensus size: 29
150669 TTTAGTAGTA
150679 AATTATAATTAAA-AATCA-TTTATTAGTTT
1 AATTAT-ATTAAAGAAT-AGTTTATTAGTTT
150708 AATTTATATTAAAGAATAGTTTATTAG-TT
1 AA-TTATATTAAAGAATAGTTTATTAGTTT
150737 AACGTTATATTAAAGAATAG-TTA--A----
1 AA--TTATATTAAAGAATAGTTTATTAGTTT
150761 AATTATATTAAAGAATAGTTTATTAGTT
1 AATTATATTAAAGAATAGTTTATTAGTT
150789 GTTTAAGGGA
Statistics
Matches: 70, Mismatches: 1, Indels: 21
0.76 0.01 0.23
Matches are distributed among these distances:
22 16 0.23
23 3 0.04
24 2 0.03
25 1 0.01
27 1 0.01
29 16 0.23
30 31 0.44
ACGTcount: A:0.45, C:0.02, G:0.09, T:0.45
Consensus pattern (29 bp):
AATTATATTAAAGAATAGTTTATTAGTTT
Found at i:150757 original size:22 final size:22
Alignment explanation
Indices: 150732--150780 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
150722 AATAGTTTAT
**
150732 TAGTTAACGTTATATTAAAGAA
1 TAGTTAAAATTATATTAAAGAA
150754 TAGTTAAAATTATATTAAAGAA
1 TAGTTAAAATTATATTAAAGAA
150776 TAGTT
1 TAGTT
150781 TATTAGTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (22 bp):
TAGTTAAAATTATATTAAAGAA
Found at i:152090 original size:23 final size:23
Alignment explanation
Indices: 152062--152106 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
152052 TTTAATTATT
*
152062 ATTTAAATTAACTATATTATTTG
1 ATTTAAATAAACTATATTATTTG
* *
152085 ATTTAAATAAATTTTATTATTT
1 ATTTAAATAAACTATATTATTT
152107 TTGTAATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (23 bp):
ATTTAAATAAACTATATTATTTG
Found at i:152106 original size:18 final size:20
Alignment explanation
Indices: 152056--152106 Score: 52
Period size: 23 Copynumber: 2.5 Consensus size: 20
152046 GTTATTTTTA
152056 ATTATTATTTAAATTAACTAT
1 ATTATTATTTAAATTAAC-AT
152077 ATTATTTGATTTAAA-TAA-AT
1 ATTA-TT-ATTTAAATTAACAT
*
152097 TTTATTATTT
1 ATTATTATTT
152107 TTGTAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
18 4 0.15
19 2 0.07
20 5 0.19
21 4 0.15
22 5 0.19
23 7 0.26
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (20 bp):
ATTATTATTTAAATTAACAT
Found at i:153174 original size:60 final size:60
Alignment explanation
Indices: 153097--153218 Score: 226
Period size: 60 Copynumber: 2.0 Consensus size: 60
153087 GTTCAAGTCG
*
153097 TAAATCATTGCTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTAC
1 TAAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTAC
*
153157 TAAATTATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTAC
1 TAAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTAC
153217 TA
1 TA
153219 TCAAATCATT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.46, C:0.12, G:0.01, T:0.41
Consensus pattern (60 bp):
TAAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTAC
Found at i:153219 original size:49 final size:49
Alignment explanation
Indices: 153152--153687 Score: 718
Period size: 49 Copynumber: 10.3 Consensus size: 49
153142 ATTACTAATC
*
153152 ATTACTAAATTATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
1 ATTACT-AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
*
153202 ATTACTAATCATTACTATCAAATCATTAAAAATTAATTATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
153251 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
*
153300 ATTACTAATCATTACTAATCATTATATCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACTAATCA-T--T-A-C----TATCAAATCATTAAAAATTAATAATAATTTCATT
153358 ATTACTAATCATTACTATC-AATCATTAAAAATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
153406 A-TACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
153454 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
* *
153503 ATTACTAATCATTACTAAATCATTAAT-ATCAAATCATTAAATATTAATAATAATTTCATTATTA
1 ATTACTAATCATTACT--ATCA--AATCATTAAA-AATT--A-A-TAA---TAATTTC---A-T-
153567 CTAATT
49 -----T
153573 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
153622 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
153671 ATTACTAATCATTACTA
1 ATTACTAATCATTACTA
153688 AATCATTAAT
Statistics
Matches: 443, Mismatches: 9, Indels: 69
0.85 0.02 0.13
Matches are distributed among these distances:
47 17 0.04
48 59 0.13
49 234 0.53
50 7 0.02
51 4 0.01
52 6 0.01
53 8 0.02
54 2 0.00
55 3 0.01
56 2 0.00
57 4 0.01
58 44 0.10
59 7 0.02
60 7 0.02
62 3 0.01
63 2 0.00
64 2 0.00
66 6 0.01
67 5 0.01
68 4 0.01
70 17 0.04
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (49 bp):
ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
Found at i:153230 original size:109 final size:108
Alignment explanation
Indices: 153099--153954 Score: 1102
Period size: 109 Copynumber: 8.1 Consensus size: 108
153089 TCAAGTCGTA
* *
153099 AATCATTGCTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTAAATTA
1 AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACT-AATCA
153164 TTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
65 TTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
*
153208 AATCATTACTATCAAATCATTAAAAATTAATTATAATTTC------A-T--T-ATTACTAATCAT
1 AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTAATCAT
153263 TACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
66 TACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
* * * * * * * *
153306 AATCATTACTAATCATTAT-ATCAAATCATTAAATATTAA--TAATAATT--TCATTATTACTAA
1 AATCATTACT-ATCA-AATCATTAAA-AATT-AATAATAATTTCATTATTACTAATCATTACTAA
153366 TCATTACTATC-AATCATTAAAAATTAATAATAATTTCATTA-TACT
62 TCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
153411 AATCATTACTATCAAATCATTAAAAATTAATAATAATTTC------A-T--T-ATTACTAATCAT
1 AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTAATCAT
153466 TACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
66 TACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
* *
153509 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATTA
1 AATCA-T--T--A-C-----TATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCA
153574 TTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
55 TTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
153628 AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTAAATCA
1 AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACT-AATCA
*
153693 TTAATATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
65 TTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
153737 AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTA-T--T-A-C--T-C--ATCAT
1 AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTAATCAT
* *
153792 TACTATCAAATCATTAAAAATCAATAATAATTTTATTATTACT
66 TACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
* *
153835 AATCATTACTATCAAATCCTTAAAAATTAATAATAATTTCATTATTACTAATCATTAATAAATCA
1 AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACT-AATCA
* * *
153900 TTACTATCAAATCATTAAATATTAATAATAATTTAATCATTACT
65 TTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
153944 AATCATTACTA
1 AATCATTACTA
153955 AATCTTATAA
Statistics
Matches: 668, Mismatches: 27, Indels: 104
0.84 0.03 0.13
Matches are distributed among these distances:
96 19 0.03
97 31 0.05
98 155 0.23
99 19 0.03
100 6 0.01
101 9 0.01
102 10 0.01
103 8 0.01
104 13 0.02
105 16 0.02
106 32 0.05
107 19 0.03
108 49 0.07
109 215 0.32
113 1 0.00
114 1 0.00
115 1 0.00
116 2 0.00
118 2 0.00
119 60 0.09
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.41
Consensus pattern (108 bp):
AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTAATCAT
TACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
Found at i:153266 original size:98 final size:98
Alignment explanation
Indices: 153152--153902 Score: 1017
Period size: 98 Copynumber: 7.3 Consensus size: 98
153142 ATTACTAATC
*
153152 ATTACTAAATTATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTAC
1 ATTACT-AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTAC
*
153217 TATCAAATCATTAAAAATTAATTATAATTTCATT
65 TATCAAATCATTAAAAATTAATAATAATTTCATT
153251 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCA-T--T
*
153316 AATCATTATATCAAATCATTAAATATTAATAATAATTTCATT
63 -A-C----TATCAAATCATTAAAAATTAATAATAATTTCATT
153358 ATTACTAATCATTACTATC-AATCATTAAAAATTAATAATAATTTCATTA-TACTAATCATTACT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACT
153421 ATCAAATCATTAAAAATTAATAATAATTTCATT
66 ATCAAATCATTAAAAATTAATAATAATTTCATT
153454 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCA-T--T
*
153519 AAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATT
63 --A-C-----TATCAAATCATTAAAAATTAATAAT-A----A-T-TT-C--ATT
153573 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACT
153638 ATCAAATCATTAAAAATTAATAATAATTTCATT
66 ATCAAATCATTAAAAATTAATAATAATTTCATT
153671 ATTACTAATCATTACTAAATCATTAATATCAAATCATTAAAAATTAATAATAATTTCATTATTAC
1 ATTACTAATCA-T--T--A-C-----TATCAAATCATTAAAAATTAATAATAATTTCATTATTAC
153736 TAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
55 TAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
* * *
153780 ATTACTCATCATTACTATCAAATCATTAAAAATCAATAATAATTTTATTATTACTAATCATTACT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACT
*
153845 ATCAAATCCTTAAAAATTAATAATAATTTCATT
66 ATCAAATCATTAAAAATTAATAATAATTTCATT
153878 ATTACTAATCATTA--AT-AAATCATTA
1 ATTACTAATCATTACTATCAAATCATTA
153903 CTATCAAATC
Statistics
Matches: 598, Mismatches: 11, Indels: 90
0.86 0.02 0.13
Matches are distributed among these distances:
95 9 0.02
96 54 0.09
97 30 0.05
98 169 0.28
99 9 0.02
100 2 0.00
101 6 0.01
102 3 0.01
103 5 0.01
104 4 0.01
105 9 0.02
106 31 0.05
107 52 0.09
108 25 0.04
109 117 0.20
110 1 0.00
113 1 0.00
114 2 0.00
115 1 0.00
116 3 0.01
117 1 0.00
118 1 0.00
119 63 0.11
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.41
Consensus pattern (98 bp):
ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACT
ATCAAATCATTAAAAATTAATAATAATTTCATT
Found at i:153368 original size:48 final size:49
Alignment explanation
Indices: 153310--153902 Score: 573
Period size: 49 Copynumber: 12.6 Consensus size: 49
153300 ATTACTAATC
*
153310 ATTACTAATCATTA-TATCAAATCATTAAATATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
153358 ATTACTAATCATTACTATC-AATCATTAAAAATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
153406 A-TACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
153454 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
* * * * *
153503 ATTACTAATCATTAC--T-AAATCATT-AATA-TCA-AATCA-TTAAAT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
* * * ** * *
153545 ATTAATAATAAT---T-TC--ATTATTACTAATTATTACTAA--TCATT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
* * * * * * * * *
153586 ACTATCAAATCATTA--A--AAATTAATAATAATTTCATTATTACTAATCATT
1 ATTA-CTAATCATTACTATCAAATCATTAA-AAATT-AATAATAAT-TTCATT
* * * * * * * * *
153635 ACTATCAAATCATTA--A--AAATTAATAATAATT--TCATTATTACTAATC
1 ATTA-CTAATCATTACTATCAAATCATTAAAAATTAATAATAATT--TCATT
*
153681 ATTACTAAATCATTAATATCAAATCATTAAAAATTAATAATAATTTCATT
1 ATTACT-AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
153731 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
* * *
153780 ATTACTCATCATTACTATCAAATCATTAAAAATCAATAATAATTTTATT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
*
153829 ATTACTAATCATTACTATCAAATCCTTAAAAATTAATAATAATTTCATT
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
153878 ATTACTAATCATTA--AT-AAATCATTA
1 ATTACTAATCATTACTATCAAATCATTA
153903 CTATCAAATC
Statistics
Matches: 462, Mismatches: 55, Indels: 58
0.80 0.10 0.10
Matches are distributed among these distances:
39 5 0.01
40 2 0.00
41 7 0.02
42 22 0.05
43 4 0.01
44 8 0.02
45 10 0.02
46 36 0.08
47 20 0.04
48 77 0.17
49 244 0.53
50 21 0.05
52 6 0.01
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (49 bp):
ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATT
Found at i:153431 original size:168 final size:161
Alignment explanation
Indices: 153168--153954 Score: 914
Period size: 158 Copynumber: 5.0 Consensus size: 161
153158 AAATTATTAC
153168 TATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTATCAAATCATTAAAA
1 TATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTATCAAATCATTAAAA
*
153233 ATTAATTATAATTTC------A-T-T-ATTACTAATCATTACTATCAAATCATTAAAAATTAATA
66 ATTAATAATAATTTCATTATTACTATCATTACTAATCATTACTATCAAATCATTAAAAATTAATA
153289 ATAATTTCATTATTACTAATCATTACTAATCATTA
131 ATAATTTCATTATTACTAATCATTACT-ATC---A
*
153324 TATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTATC-AATCATTAAAA
1 TATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTATCAAATCATTAAAA
153388 ATTAATAATAATTTC------A-T-T-A-TACTAATCATTACTATCAAATCATTAAAAATTAATA
66 ATTAATAATAATTTCATTATTACTATCATTACTAATCATTACTATCAAATCATTAAAAATTAATA
153443 ATAATTTCATTATTACTAATCA-T--TA-C-
131 ATAATTTCATTATTACTAATCATTACTATCA
153469 TATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTAATATCA
1 TATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCA-T--T--A-C-----TATCA
* *
153534 AATCATTAAATATTAATAATAATTTCATTATTACTAATTATTACTAATCATTACTATCAAATCAT
55 AATCATTAAAAATTAATAATAATTTCATTATTACT-ATCATTACTAATCATTACTATCAAATCAT
153599 TAAAAATTAATAATAATTTCATTATTACTAATCA-T--TA-C-
119 TAAAAATTAATAATAATTTCATTATTACTAATCATTACTATCA
153637 TATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTAC--T-AAATCATTAATA
1 TATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTATCAAATCATT-A-A
* * * * * * *
153699 TCAAATCATTAAAAATTAATAATAATTTC-ATTATTACTAATCATTACTATCAAATCATTAAAAA
64 --AAATTAATAATAATT--TCATTATTACTATCATTACTAATCATTACTATCAAATCATTAAAAA
*
153763 TTAATAATAATTTCATTATTACTCATCA-T--TA-C-
125 TTAATAATAATTTCATTATTACTAATCATTACTATCA
* * *
153795 TATCAAATCATTAAAAATCAATAATAATTTTATTATTACTAATCATTACTATCAAATCCTTAAAA
1 TATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTATCAAATCATTAAAA
* *
153860 ATTAATAATAATTTCATTATTACTAATCATTAATAAATCATTACTATCAAATCATTAAATATTAA
66 ATTAATAATAATTTCATTATTACT-ATCATTACT-AATCATTACTATCAAATCATTAAAAATTAA
* *
153925 TAATAATTTAATCATTACTAATCATTACTA
129 TAATAATTTCATTATTACTAATCATTACTA
153955 AATCTTATAA
Statistics
Matches: 566, Mismatches: 27, Indels: 71
0.85 0.04 0.11
Matches are distributed among these distances:
145 44 0.08
146 1 0.00
148 1 0.00
149 1 0.00
150 2 0.00
151 2 0.00
153 1 0.00
154 66 0.12
155 38 0.07
156 57 0.10
157 44 0.08
158 174 0.31
159 2 0.00
160 9 0.02
161 9 0.02
162 1 0.00
163 2 0.00
164 1 0.00
165 1 0.00
166 1 0.00
167 2 0.00
168 107 0.19
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (161 bp):
TATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTATCAAATCATTAAAA
ATTAATAATAATTTCATTATTACTATCATTACTAATCATTACTATCAAATCATTAAAAATTAATA
ATAATTTCATTATTACTAATCATTACTATCA
Found at i:153527 original size:60 final size:59
Alignment explanation
Indices: 153454--153955 Score: 607
Period size: 49 Copynumber: 9.1 Consensus size: 59
153444 TAATTTCATT
153454 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
* * *
153513 ATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATT
1 ATTACT-AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
153573 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTC------A-T--T-
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
153622 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
*
153681 ATTACTAAATCATTAATATCAAATCATTAAAAATTAATAATAATTTC------A-T--T-
1 ATTACT-AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
153731 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTA-T--T-A-C
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
*
153785 --T-C--ATCATTACTATCAAATCATTAAAAATCAATAATAA-TT-----TTA-T--T-
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
*
153829 ATTACTAATCATTACTATCAAATCCTTAAAAATTAATAATAATTTCATTATTACTAATC
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
* * * *
153888 ATTAATAAATCATTACTATCAAATCATTAAATATTAATAATAATTTAATCATTACTAATC
1 ATTACT-AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
153948 ATTACTAA
1 ATTACTAA
153956 ATCTTATAAA
Statistics
Matches: 389, Mismatches: 16, Indels: 76
0.81 0.03 0.16
Matches are distributed among these distances:
44 1 0.00
45 1 0.00
46 1 0.00
47 1 0.00
48 2 0.01
49 152 0.39
50 9 0.02
51 2 0.01
52 2 0.01
53 3 0.01
54 1 0.00
55 4 0.01
56 2 0.01
58 2 0.01
59 57 0.15
60 149 0.38
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.41
Consensus pattern (59 bp):
ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
Found at i:153575 original size:10 final size:10
Alignment explanation
Indices: 153560--153589 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
153550 TAATAATTTC
153560 ATTATTACTA
1 ATTATTACTA
153570 ATTATTACTA
1 ATTATTACTA
*
153580 ATCATTACTA
1 ATTATTACTA
153590 TCAAATCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (10 bp):
ATTATTACTA
Found at i:153718 original size:21 final size:21
Alignment explanation
Indices: 153692--153768 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 21
153682 TTACTAAATC
153692 ATTAATATCAAATCATTAAAA
1 ATTAATATCAAATCATTAAAA
*
153713 ATTAATAAT-AATTTCATTATTACTAA
1 ATTAAT-ATCAA-ATCATTA--A--AA
*
153739 TCATTACTATCAAATCATTAAAA
1 --ATTAATATCAAATCATTAAAA
153762 ATTAATA
1 ATTAATA
153769 ATAATTTCAT
Statistics
Matches: 43, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
21 14 0.33
22 8 0.19
23 2 0.05
24 1 0.02
25 1 0.02
26 2 0.05
27 8 0.19
28 7 0.16
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (21 bp):
ATTAATATCAAATCATTAAAA
Found at i:153820 original size:207 final size:210
Alignment explanation
Indices: 153454--153954 Score: 731
Period size: 207 Copynumber: 2.3 Consensus size: 210
153444 TAATTTCATT
153454 ATTACT-AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTAC
1 ATTACTAAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCA-T--
*
153518 TAAATCATTAATATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATTATTACTAATC
63 T--A-C-----TATCAAATCATTAAAAATTAATAATAATTTCATTATTAC------TTAC-AATC
*
153583 ATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTATCAAATCAT
113 ATTACTATCAAATCATTAAAAATCAATAATAATTTCATTATTACTAATCATTACTATCAAATCAT
153648 TAAAAATTAATAATAATTTCATTATTACTAATC
178 TAAAAATTAATAATAATTTCATTATTACTAATC
*
153681 ATTACTAAATCATTAATATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTAC
1 ATTACTAAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTAC
153746 TATCAAATCATTAAAAATTAATAATAATTTCATTATTAC-T-C-ATCATTACTATCAAATCATTA
66 TATCAAATCATTAAAAATTAATAATAATTTCATTATTACTTACAATCATTACTATCAAATCATTA
* *
153808 AAAATCAATAATAATTTTATTATTACTAATCATTACTATCAAATCCTTAAAAATTAATAATAATT
131 AAAATCAATAATAATTTCATTATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATT
153873 TCATTATTACTAATC
196 TCATTATTACTAATC
* * * *
153888 ATTAATAAATCATTACTATCAAATCATTAAATATTAATAATAATTTAATCATTACTAATCATTAC
1 ATTACTAAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTAC
153953 TA
66 TA
153955 AATCTTATAA
Statistics
Matches: 263, Mismatches: 10, Indels: 22
0.89 0.03 0.07
Matches are distributed among these distances:
207 160 0.61
209 1 0.00
210 1 0.00
217 38 0.14
222 1 0.00
223 1 0.00
225 1 0.00
227 7 0.03
228 53 0.20
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.41
Consensus pattern (210 bp):
ATTACTAAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTAC
TATCAAATCATTAAAAATTAATAATAATTTCATTATTACTTACAATCATTACTATCAAATCATTA
AAAATCAATAATAATTTCATTATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATT
TCATTATTACTAATC
Found at i:153902 original size:21 final size:20
Alignment explanation
Indices: 153878--153958 Score: 62
Period size: 21 Copynumber: 4.0 Consensus size: 20
153868 TAATTTCATT
153878 ATTACTAATCATTAATAAATC
1 ATTACTAATCATT-ATAAATC
*
153899 ATTACT-ATCAAATCATTAAAT-
1 ATTACTAATC--ATTA-TAAATC
* *
153920 ATTAATAATAATT-T-AATC
1 ATTACTAATCATTATAAATC
153938 ATTACTAATCATTACTAAATC
1 ATTACTAATCATTA-TAAATC
153959 TTATAAATAC
Statistics
Matches: 46, Mismatches: 6, Indels: 16
0.68 0.09 0.24
Matches are distributed among these distances:
17 3 0.07
18 12 0.26
20 6 0.13
21 16 0.35
22 9 0.20
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTACTAATCATTATAAATC
Found at i:153958 original size:60 final size:59
Alignment explanation
Indices: 153829--153955 Score: 200
Period size: 60 Copynumber: 2.1 Consensus size: 59
153819 TAATTTTATT
*
153829 ATTACTAATCATTACTATCAAATCCTTAAAAATTAATAATAATTTCATTATTACTAATC
1 ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
* * * *
153888 ATTAATAAATCATTACTATCAAATCATTAAATATTAATAATAATTTAATCATTACTAATC
1 ATTACT-AATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
153948 ATTACTAA
1 ATTACTAA
153956 ATCTTATAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
59 7 0.11
60 54 0.89
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.40
Consensus pattern (59 bp):
ATTACTAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATC
Found at i:157029 original size:28 final size:28
Alignment explanation
Indices: 156998--157051 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
156988 ATAATCTAAT
*
156998 ATATAACTTAAACTAACAAATTAATAGA
1 ATATAACTTAAACTAACAAACTAATAGA
157026 ATATAACTTAAACTAACAAACTAATA
1 ATATAACTTAAACTAACAAACTAATA
157052 ATTTATACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.57, C:0.13, G:0.02, T:0.28
Consensus pattern (28 bp):
ATATAACTTAAACTAACAAACTAATAGA
Found at i:157052 original size:21 final size:21
Alignment explanation
Indices: 157028--157076 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
157018 TTAATAGAAT
*
157028 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACAA
* *
157049 ATAATTTATACTAACAAACAA
1 ATAACTTAAACTAACAAACAA
157070 ATTAACT
1 A-TAACT
157077 AAATTTCTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACAA
Found at i:157058 original size:28 final size:28
Alignment explanation
Indices: 156994--157058 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
156984 TTATATAATC
*
156994 TAATATATAACTTAAACTAACAAATTAA
1 TAATATATAACTTAAACTAACAAACTAA
157022 TAGA-ATATAACTTAAACTAACAAACTAA
1 TA-ATATATAACTTAAACTAACAAACTAA
*
157050 TAATTTATA
1 TAATATATA
157059 CTAACAAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 1 0.03
28 31 0.94
29 1 0.03
ACGTcount: A:0.55, C:0.11, G:0.02, T:0.32
Consensus pattern (28 bp):
TAATATATAACTTAAACTAACAAACTAA
Found at i:157821 original size:29 final size:29
Alignment explanation
Indices: 157726--157856 Score: 109
Period size: 29 Copynumber: 4.4 Consensus size: 29
157716 CCGGGCGTGT
* *
157726 ATGGCGACCTATAAGGTCGCTGGGCGTGC
1 ATGGCGACCTACAAGGTCGCTGGGAGTGC
* * * *
157755 ACGGCGACCTACCATCTTGGTCGCCGGGATTGC
1 ATGGCGACCTA-CA---AGGTCGCTGGGAGTGC
*
157788 TTGGCGACCTACAAGGTCGCTGGGAGTGC
1 ATGGCGACCTACAAGGTCGCTGGGAGTGC
*** **
157817 ATGGCGACCTTGTAGGTCGCTTAGAGTGC
1 ATGGCGACCTACAAGGTCGCTGGGAGTGC
*
157846 TTGGCGACCTA
1 ATGGCGACCTA
157857 TGGTTGGGTT
Statistics
Matches: 79, Mismatches: 19, Indels: 8
0.75 0.18 0.08
Matches are distributed among these distances:
29 55 0.70
30 1 0.01
32 2 0.03
33 21 0.27
ACGTcount: A:0.17, C:0.26, G:0.34, T:0.23
Consensus pattern (29 bp):
ATGGCGACCTACAAGGTCGCTGGGAGTGC
Found at i:158061 original size:2 final size:2
Alignment explanation
Indices: 158054--158084 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
158044 GAGTTTAGCC
*
158054 TA TA TA TA TA TT TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
158085 GCGCACTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:169763 original size:3 final size:3
Alignment explanation
Indices: 169757--169785 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
169747 ATTATTGTAA
169757 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
169786 ACATTACAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:171379 original size:26 final size:25
Alignment explanation
Indices: 171343--171392 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
171333 TTAGCAGGTA
*
171343 AATTTTTAAAATTTTAGAAATATAAG
1 AATTTATAAAATTTTAG-AATATAAG
171369 AATTTATAAAATTTTAGAATATAA
1 AATTTATAAAATTTTAGAATATAA
171393 CAATAATACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (25 bp):
AATTTATAAAATTTTAGAATATAAG
Found at i:172389 original size:15 final size:16
Alignment explanation
Indices: 172364--172393 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
172354 TATCGAAGTT
172364 TTTGTATTTTTTAAGA
1 TTTGTATTTTTTAAGA
172380 TTTG-ATTTTTTAAG
1 TTTGTATTTTTTAAG
172394 TTTTTTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.23, C:0.00, G:0.13, T:0.63
Consensus pattern (16 bp):
TTTGTATTTTTTAAGA
Found at i:173109 original size:17 final size:17
Alignment explanation
Indices: 173070--173101 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
173060 ATTTATATGA
173070 TTTTTTTTATATAATAG
1 TTTTTTTTATATAATAG
173087 TTTTTTTTATA-AATA
1 TTTTTTTTATATAATA
173102 TATATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (17 bp):
TTTTTTTTATATAATAG
Found at i:173705 original size:23 final size:23
Alignment explanation
Indices: 173661--173705 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
173651 AACATATTAG
**
173661 GTAGCGCTTATATAATGTAATAT
1 GTAGCGCTTATATAATAAAATAT
173684 GTAGCGCTTATATAATAAAATA
1 GTAGCGCTTATATAATAAAATA
173706 GGCATTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.36
Consensus pattern (23 bp):
GTAGCGCTTATATAATAAAATAT
Found at i:173767 original size:87 final size:87
Alignment explanation
Indices: 173621--173783 Score: 281
Period size: 87 Copynumber: 1.9 Consensus size: 87
173611 AATGTTATAT
* *
173621 CATTTAATCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATATGT
1 CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
173686 AGCGCTTATATAATAAAATAGG
66 AGCGCTTATATAATAAAATAGG
* * *
173708 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTATCTCTTATATAATGTAATAGGT
1 CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
173773 AGCGCTTATAT
66 AGCGCTTATAT
173784 TGACCTATTT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 71 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.34
Consensus pattern (87 bp):
CATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
AGCGCTTATATAATAAAATAGG
Found at i:174193 original size:201 final size:201
Alignment explanation
Indices: 173803--174495 Score: 740
Period size: 201 Copynumber: 3.4 Consensus size: 201
173793 TTCGAAGTAA
* * * * * * ***
173803 ACCGGTAACATTGCAAATTTACCTATTATATTATTATTATCGGTTTCGGTGTTTTTTATATCGAT
1 ACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTTGATGTTTTTGGGATCGAT
** * * * **
173868 ACAATTT-TAAATGTATCGACACTTTATGCTTGCACCTCGTTGGCCATTCATATTTCATTATGG-
66 ACTTTTTATAAATGTATCGACACTTTATGCGTGCACCTCGTTTG--A-GC--A-TTCATCCTGGA
* * * *
173931 -AAAAAGTATCGTCACAAACTAAAAAAGTGTCGATACATGAT-TTAGACCTATTCTCTCATAAAA
125 CAAAAAGTATCGACACAAATTAAAAAAGTGTCGATACATTATGTT-GACCTATTTTCTCATAAAA
173994 CCGGTATATTTAT
189 CCGGTATATTTAT
* * * **
174007 ACCGGTTACATTGAAAATTTACCTATTACATTATACTTATGGGTTTTGATGTTTCCGGGATCGAT
1 ACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTTGATGTTTTTGGGATCGAT
* *
174072 ACTTTTTATAAATGTATCGACACTTTATG-GTTGCACC-CTTTTTG-GCATTCATTCTGGACCAA
66 ACTTTTTATAAATGTATCGACACTTTATGCG-TGCACCTC-GTTTGAGCATTCATCCTGGA-CAA
* * * * * *
174134 AAAGTATCGACACAAATTTAACAAGTGTCGATACTTTATGTTGACCTATTTTATCATAAAACTGA
128 AAAGTATCGACACAAATTAAAAAAGTGTCGATACATTATGTTGACCTATTTTCTCATAAAACCGG
174199 TATATTTAT
193 TATATTTAT
* * *
174208 ATCAGTTACATTGTAAATTTACCTATTACATTATAATTATCGATTTTGATGTTTTTGGGATCGAT
1 ACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTTGATGTTTTTGGGATCGAT
* *
174273 ACTTTTAATAAATGTATCGACACTTTATGCGTGCACCTCGTTTGAGCATTCATCCTGGACAATAA
66 ACTTTTTATAAATGTATCGACACTTTATGCGTGCACCTCGTTTGAGCATTCATCCTGGACAAAAA
** * * * * * * *
174338 GTATCGACACAAATTCCAGAACTTTCGATACATTATGTTGACATGTTTTCTAAT-TAACCGGTAT
131 GTATCGACACAAATTAAAAAAGTGTCGATACATTATGTTGACCTATTTTCTCATAAAACCGGTAT
*
174402 AGTTAT
196 ATTTAT
* *
174408 ACCGGTTACATTGTTAATTTACCTATTACATTATAATTATTGGTTTTGATGTTTTTTGGG-TCGA
1 ACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTTGATG-TTTTTGGGATCGA
* *
174472 TAC-TTGTAGAAAATGTATCGACAC
65 TACTTTTTA-TAAATGTATCGACAC
174496 ATATTTAGGT
Statistics
Matches: 413, Mismatches: 64, Indels: 28
0.82 0.13 0.06
Matches are distributed among these distances:
198 9 0.02
199 4 0.01
200 79 0.19
201 216 0.52
202 17 0.04
204 58 0.14
205 30 0.07
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.39
Consensus pattern (201 bp):
ACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTTGATGTTTTTGGGATCGAT
ACTTTTTATAAATGTATCGACACTTTATGCGTGCACCTCGTTTGAGCATTCATCCTGGACAAAAA
GTATCGACACAAATTAAAAAAGTGTCGATACATTATGTTGACCTATTTTCTCATAAAACCGGTAT
ATTTAT
Found at i:177699 original size:20 final size:22
Alignment explanation
Indices: 177674--177747 Score: 80
Period size: 24 Copynumber: 3.3 Consensus size: 22
177664 CCGTTCGTGA
177674 ATGTTCG-A-TTATGTTTGTTT
1 ATGTTCGTAGTTATGTTTGTTT
177694 ATGTTCGTTCAGTTATGTTTGTTT
1 ATGTTCG-T-AGTTATGTTTGTTT
* *
177718 ATGTTCGTTCGGTTATGTTCGTTT
1 ATGTTCG-T-AGTTATGTTTGTTT
177742 ATGTTC
1 ATGTTC
177748 ATTCATTTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
20 7 0.15
23 1 0.02
24 40 0.83
ACGTcount: A:0.12, C:0.09, G:0.22, T:0.57
Consensus pattern (22 bp):
ATGTTCGTAGTTATGTTTGTTT
Found at i:177703 original size:24 final size:24
Alignment explanation
Indices: 177682--177761 Score: 124
Period size: 24 Copynumber: 3.3 Consensus size: 24
177672 GAATGTTCGA
177682 TTATGTTTGTTTATGTTCGTTCAG
1 TTATGTTTGTTTATGTTCGTTCAG
*
177706 TTATGTTTGTTTATGTTCGTTCGG
1 TTATGTTTGTTTATGTTCGTTCAG
* * *
177730 TTATGTTCGTTTATGTTCATTCAT
1 TTATGTTTGTTTATGTTCGTTCAG
177754 TTATGTTT
1 TTATGTTT
177762 AACCCAATCT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.12, C:0.09, G:0.19, T:0.60
Consensus pattern (24 bp):
TTATGTTTGTTTATGTTCGTTCAG
Found at i:177709 original size:14 final size:13
Alignment explanation
Indices: 177692--177740 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
177682 TTATGTTTGT
177692 TTATGTTCGTTCAG
1 TTATGTTCGTTC-G
*
177706 TTATGTTTG-T--
1 TTATGTTCGTTCG
177716 TTATGTTCGTTCGG
1 TTATGTTCGTTC-G
177730 TTATGTTCGTT
1 TTATGTTCGTT
177741 TATGTTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
10 8 0.28
11 1 0.03
13 1 0.03
14 19 0.66
ACGTcount: A:0.10, C:0.10, G:0.22, T:0.57
Consensus pattern (13 bp):
TTATGTTCGTTCG
Found at i:178847 original size:16 final size:16
Alignment explanation
Indices: 178828--178886 Score: 91
Period size: 16 Copynumber: 3.7 Consensus size: 16
178818 CCAATGTTTA
*
178828 TGTTCGTTTATGTCCG
1 TGTTCGTTTATGTTCG
*
178844 TGTTCATTTATGTTCG
1 TGTTCGTTTATGTTCG
178860 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
*
178876 TGTTCCTTTAT
1 TGTTCGTTTAT
178887 TTATTAAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.08, C:0.15, G:0.20, T:0.56
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:179666 original size:200 final size:200
Alignment explanation
Indices: 179233--180163 Score: 1265
Period size: 200 Copynumber: 4.7 Consensus size: 200
179223 CGTGTTATTT
* * * * * * * * *
179233 AAAAGTATCGACACAAAATAAAAAAATATTGCTACATGTTGTAGACCTATTCTCTAATAAAAGTG
1 AAAAGTATCGACACAATATTAACAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACTG
* * * * * * *
179298 GTATATTTATACCGGTTATATTACACAATTACCTATTATATTATAATTATGGGTTTTGATGTTTA
66 GTATATTTATACCGGTTACATTGCAAAATTACCTATTACATTATAATTATAGGTTTCGATGTTTT
* *
179363 TGGGATAGACACTTTTT-AAAATGTATCGACACTTTGTGCGTTCACCCTTTTTGGCGTCCATTCT
131 TGGGATCGACACTTTTTGAAAATGTATCGACACTTTGTGCGTTCACCCTTTTTGGCATCCATTCT
179427 GGACA
196 GGACA
* * * **
179432 TAAAGTATCGACACAATATTAACAAGTGTCGATACATGTTATAGACCTATTCTCTCATGAAACCA
1 AAAAGTATCGACACAATATTAACAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACTG
* *
179497 GTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATAGGTTTCGATGTTTT
66 GTATATTTATACCGGTTACATTGCAAAATTACCTATTACATTATAATTATAGGTTTCGATGTTTT
* * **
179562 TCGGATTGACACTTTTTGAAAATGTATCGACACTTTGTGCGTTCACAATTTTTGGCATCCATTCT
131 TGGGATCGACACTTTTTGAAAATGTATCGACACTTTGTGCGTTCACCCTTTTTGGCATCCATTCT
179627 GGACA
196 GGACA
* * * *
179632 AAAAATATCGACACAATATTAATAAGTGTCGATACATGTTGTAGACATATTTTCTCATAAAACTG
1 AAAAGTATCGACACAATATTAACAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACTG
* * * *
179697 GTATATGTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTT
66 GTATATTTATACCGGTTACATTGCAAAATTACCTATTACATTATAATTATAGGTTTCGATGTTTT
* * *
179762 TGGGATCGACACTTTTAGTAAATGTATCGACACTTTGTGCGTTCACCCTTTTTGGCGTCCATTCT
131 TGGGATCGACACTTTTTGAAAATGTATCGACACTTTGTGCGTTCACCCTTTTTGGCATCCATTCT
*
179827 GAACA
196 GGACA
* * * * * **
179832 TAAAGTATCGACACAATATTAACAAGGGTCGATACATGTTATAGACATATTCTCTCATGAAACCA
1 AAAAGTATCGACACAATATTAACAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACTG
* * * *
179897 GTATATTTATATCGGTTACATTGTAAATTTACCTATTACATTATAATTATAGGTTTCGATATTTT
66 GTATATTTATACCGGTTACATTGCAAAATTACCTATTACATTATAATTATAGGTTTCGATGTTTT
* * * * * *
179962 TTGGATCGATACTTTTTCAAAATGTATCGACACTTTGTGCTTTCACCCTTTTTGGCATCTATTTT
131 TGGGATCGACACTTTTTGAAAATGTATCGACACTTTGTGCGTTCACCCTTTTTGGCATCCATTCT
180027 GGACA
196 GGACA
* *
180032 AAAAGTATCGACACAATATTAATAAGTGTCGATACATGTTGTAGACCTATT-TTTCATAAAACTG
1 AAAAGTATCGACACAATATTAACAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACTG
* * *
180096 GTATATTTATATCAGTTACATTGAAAAATTACCTATTACATTATAATTATCA-GTTTCGATGTTT
66 GTATATTTATACCGGTTACATTGCAAAATTACCTATTACATTATAATTAT-AGGTTTCGATGTTT
180160 TTGG
130 TTGG
180164 AGTCGTTACT
Statistics
Matches: 638, Mismatches: 92, Indels: 4
0.87 0.13 0.01
Matches are distributed among these distances:
199 192 0.30
200 446 0.70
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.38
Consensus pattern (200 bp):
AAAAGTATCGACACAATATTAACAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACTG
GTATATTTATACCGGTTACATTGCAAAATTACCTATTACATTATAATTATAGGTTTCGATGTTTT
TGGGATCGACACTTTTTGAAAATGTATCGACACTTTGTGCGTTCACCCTTTTTGGCATCCATTCT
GGACA
Done.