Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008296.1 Hibiscus syriacus cultivar Beakdansim tig00110963_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1205179
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 4 of 7
Found at i:566404 original size:22 final size:21
Alignment explanation
Indices: 566350--566415 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 21
566340 TAAAAAGGGC
*
566350 AAAAAGAAAAAAAAAGC-AAAA
1 AAAAAGAAAAAAGAA-CAAAAA
566371 AAAAAGCAAAAAAAGAACAAAAA
1 AAAAAG--AAAAAAGAACAAAAA
* *
566394 GAAAAAGAAAAAGGGACAAAAA
1 -AAAAAGAAAAAAGAACAAAAA
566416 CACATGCAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
21 6 0.16
22 14 0.37
23 12 0.32
24 6 0.16
ACGTcount: A:0.80, C:0.06, G:0.14, T:0.00
Consensus pattern (21 bp):
AAAAAGAAAAAAGAACAAAAA
Found at i:567032 original size:22 final size:22
Alignment explanation
Indices: 567004--567047 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
566994 AGCTACCCCA
567004 TCAAACC-TTTGAGCATCAAATG
1 TCAAACCATTT-AGCATCAAATG
567026 TCAAACCATTTAGCATCAAATG
1 TCAAACCATTTAGCATCAAATG
567048 AACAAAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.27
Consensus pattern (22 bp):
TCAAACCATTTAGCATCAAATG
Found at i:568102 original size:36 final size:36
Alignment explanation
Indices: 567994--568117 Score: 151
Period size: 36 Copynumber: 3.4 Consensus size: 36
567984 ATTGAAAACA
* * *
567994 TTTCCCTTGAAATAAATTTCGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAATTTTCGTCTCTCTTGAGACAG
* * *
568030 TTTCCCTTGGAACTAAGTTTT-GTCTCTATTAAGACAG
1 TTTCCCTTGAAAC-AA-TTTTCGTCTCTCTTGAGACAG
* *
568067 TTTCTCTTGAAACAATTTTCGTCTATCTTGAGACAG
1 TTTCCCTTGAAACAATTTTCGTCTCTCTTGAGACAG
568103 TTTCCCTTGAAACAA
1 TTTCCCTTGAAACAA
568118 AACCTTTGAA
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
35 4 0.05
36 40 0.55
37 26 0.36
38 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (36 bp):
TTTCCCTTGAAACAATTTTCGTCTCTCTTGAGACAG
Found at i:568228 original size:68 final size:68
Alignment explanation
Indices: 568093--568250 Score: 205
Period size: 68 Copynumber: 2.4 Consensus size: 68
568083 TTTCGTCTAT
* ** *
568093 CTTGAGACAGTTTCCCTTG-AA-ACAAAACCTTTGAATTTATTTCCCCTAAAACAAATTTTTTTC
1 CTTGAGACAGTTTCTCTTGAAACACAAAACCTTCAAATTTATTTCCCCTAAAACAAATTTTGTTC
568156 TCC
66 TCC
* * *
568159 CTTGAGACAGTTACTCTTGAAACACAAAATCTTCAAATTTATTTCCCTTAAAACATAATTTTGTT
1 CTTGAGACAGTTTCTCTTGAAACACAAAACCTTCAAATTTATTTCCCCTAAAACA-AATTTTGTT
568224 -TCC
65 CTCC
* *
568227 CTTGAGACCGTTTCTCATGAAACA
1 CTTGAGACAGTTTCTCTTGAAACA
568251 ACAGATATCT
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
66 17 0.22
67 2 0.03
68 52 0.66
69 8 0.10
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.37
Consensus pattern (68 bp):
CTTGAGACAGTTTCTCTTGAAACACAAAACCTTCAAATTTATTTCCCCTAAAACAAATTTTGTTC
TCC
Found at i:569079 original size:105 final size:105
Alignment explanation
Indices: 568894--569515 Score: 912
Period size: 105 Copynumber: 6.0 Consensus size: 105
568884 GCACTCGAGG
* * ** * *
568894 CAACACAAGTTCAACTTCACAACGAAGGGACAACTGGTTGTCAACAAACAACTTCTCAATTTCAG
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCCCAATTTCAG
568959 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
65 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
569000 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCCTGTCAACAACAACTTCTCAATTTCAAA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGA
*
569065 GCCAATTTCAACTTCACAACGAAGGATATTGGACTTCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * *
569105 CAACGCAAGTTCAACTTCACGACGAAGGTACCGCTGCTTGTCAATAACAACTTCCCAATCTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGA
569170 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
569210 CAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGA
569275 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
569315 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAA-AA-TT-TC-A-TTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGA
** * *
569375 TTCAATTTCAACTTCATAACGAAGGATATTGGACTCGAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * * * ** *
569415 CAACACAAGTTCAACTTCACAACGAAGGGACGGTTGGTTGTCAACAAACAATTTCCCGGTTCCAG
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCCCAATTTCAG
* *
569480 AGCCAATTTCAACTTCACGACGGAGGATATTGGACT
65 AGCCAATTTCAACTTCACAACGAAGGATATTGGACT
569516 TGGAACAATG
Statistics
Matches: 472, Mismatches: 38, Indels: 12
0.90 0.07 0.02
Matches are distributed among these distances:
100 81 0.17
101 3 0.01
102 3 0.01
103 4 0.01
104 3 0.01
105 304 0.64
106 74 0.16
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.22
Consensus pattern (105 bp):
CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCAATTTCAGA
GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
Found at i:570107 original size:34 final size:37
Alignment explanation
Indices: 570063--570164 Score: 167
Period size: 34 Copynumber: 2.8 Consensus size: 37
570053 TTTCGTCCTA
570063 CTAGGATTCAAACTCCTAAAAATAGGATAGA-A-TTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGACATTTT
570098 -TAGGATTCAAACTCCTAAAAATAGGATA-ACATTTT
1 CTAGGATTCAAACTCCTAAAAATAGGATAGACATTTT
570133 GCTAGGATTCAAACTCCTAAAAATAGGATAGA
1 -CTAGGATTCAAACTCCTAAAAATAGGATAGA
570165 GTTCTACTAA
Statistics
Matches: 62, Mismatches: 0, Indels: 7
0.90 0.00 0.10
Matches are distributed among these distances:
33 1 0.02
34 29 0.47
35 3 0.05
37 28 0.45
38 1 0.02
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (37 bp):
CTAGGATTCAAACTCCTAAAAATAGGATAGACATTTT
Found at i:570188 original size:37 final size:37
Alignment explanation
Indices: 570060--570190 Score: 171
Period size: 37 Copynumber: 3.6 Consensus size: 37
570050 ATTTTTCGTC
570060 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
570097 -T--TAGGATTCAAACTCCTAAAAATAGGATA-ACATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGA-ATT
* * *
570131 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
570168 CTACTAAGATTTAAATTCCTAAA
1 CTACTAGGATTCAAACTCCTAAA
570191 GGTAGGATCC
Statistics
Matches: 83, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
33 1 0.01
34 31 0.37
35 1 0.01
36 1 0.01
37 48 0.58
38 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:570750 original size:16 final size:18
Alignment explanation
Indices: 570729--570763 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
570719 TTTACTCATT
570729 TATTTAT-CTAT-TTTTA
1 TATTTATCCTATATTTTA
570745 TATTTATCCTATATTTTA
1 TATTTATCCTATATTTTA
570763 T
1 T
570764 GTTTTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 4 0.24
18 6 0.35
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.66
Consensus pattern (18 bp):
TATTTATCCTATATTTTA
Found at i:574282 original size:31 final size:31
Alignment explanation
Indices: 574247--574314 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
574237 TCAAAATACA
574247 TAAGATATTG-TCACTTACGTTTTTATTTAAT
1 TAAGATA-TGATCACTTACGTTTTTATTTAAT
*
574278 TAAGATATGATCACTTTCGTTTTTATTTAAT
1 TAAGATATGATCACTTACGTTTTTATTTAAT
574309 TAAGAT
1 TAAGAT
574315 GTGGTCACCC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
30 2 0.06
31 33 0.94
ACGTcount: A:0.31, C:0.09, G:0.10, T:0.50
Consensus pattern (31 bp):
TAAGATATGATCACTTACGTTTTTATTTAAT
Found at i:575385 original size:29 final size:29
Alignment explanation
Indices: 575332--575465 Score: 119
Period size: 29 Copynumber: 4.4 Consensus size: 29
575322 ATATTATCAA
* *
575332 AATAAAATATAAATATTTAAGTTAAGATAAG
1 AATAAAATAT--ATTTTTAATTTAAGATAAG
* *
575363 AATAAATTATATTTTTAATTTAAGATAAT
1 AATAAAATATATTTTTAATTTAAGATAAG
* * *
575392 ATTAAAAATATATATTTTTAAATTAAAATAAG
1 A--ATAAA-ATATATTTTTAATTTAAGATAAG
*
575424 AATAAAATATATTTTTAGGTTATAA-A-AAG
1 AATAAAATATATTTTTA-ATT-TAAGATAAG
575453 AATAAAATATATT
1 AATAAAATATATT
575466 CAATAAGTTA
Statistics
Matches: 86, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
29 44 0.51
30 6 0.07
31 16 0.19
32 20 0.23
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (29 bp):
AATAAAATATATTTTTAATTTAAGATAAG
Found at i:575459 original size:61 final size:60
Alignment explanation
Indices: 575332--575464 Score: 153
Period size: 61 Copynumber: 2.2 Consensus size: 60
575322 ATATTATCAA
* * * * *
575332 AATAAAATATAAATATTTAAGTTAAGATAAGAATAAATTATATTTTTAATTTAAGATAAT
1 AATAAAATATATATATTTAAATTAAAATAAGAATAAAATATATTTTTAATTTAAGATAAG
* * *
575392 ATTAAAAATATATATTTTTAAATTAAAATAAGAATAAAATATATTTTTAGGTTATAA-A-AAG
1 AAT-AAAATATATATATTTAAATTAAAATAAGAATAAAATATATTTTTA-ATT-TAAGATAAG
575453 AATAAAATATAT
1 AATAAAATATAT
575465 TCAATAAGTT
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
60 11 0.18
61 44 0.72
62 3 0.05
63 3 0.05
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (60 bp):
AATAAAATATATATATTTAAATTAAAATAAGAATAAAATATATTTTTAATTTAAGATAAG
Found at i:575754 original size:16 final size:17
Alignment explanation
Indices: 575733--575766 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
575723 AGTTGGTGAG
*
575733 AAAATATATT-AAATAA
1 AAAATAAATTAAAATAA
575749 AAAATAAATTAAAATAA
1 AAAATAAATTAAAATAA
575766 A
1 A
575767 TTTAATCATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAATAAATTAAAATAA
Found at i:578058 original size:24 final size:24
Alignment explanation
Indices: 578031--578092 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
578021 CGTTCGTGAA
*
578031 CGTTCGATTATGTTCATTTATGTT
1 CGTTCGATTATGTTCATTTAAGTT
* *
578055 CGTTCGGTTATGTTCGTTTAAGTT
1 CGTTCGATTATGTTCATTTAAGTT
578079 CGTTC-ATTTATGTT
1 CGTTCGA-TTATGTT
578093 TAACCCAATC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.15, C:0.13, G:0.19, T:0.53
Consensus pattern (24 bp):
CGTTCGATTATGTTCATTTAAGTT
Found at i:579188 original size:16 final size:16
Alignment explanation
Indices: 579169--579229 Score: 95
Period size: 16 Copynumber: 3.8 Consensus size: 16
579159 TGGTCTCCAA
*
579169 CGTTTATGTTCGTGTT
1 CGTTTATGTTCGTATT
579185 CGTTTATGTTCGTATT
1 CGTTTATGTTCGTATT
*
579201 TGTTTATGTTCGTATT
1 CGTTTATGTTCGTATT
*
579217 TGTTTATGTTCGT
1 CGTTTATGTTCGT
579230 TTATTTATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.10, C:0.10, G:0.21, T:0.59
Consensus pattern (16 bp):
CGTTTATGTTCGTATT
Found at i:579196 original size:10 final size:10
Alignment explanation
Indices: 579181--579233 Score: 50
Period size: 10 Copynumber: 6.1 Consensus size: 10
579171 TTTATGTTCG
579181 TGTTCGTTTA
1 TGTTCGTTTA
579191 TGTTCG--TA
1 TGTTCGTTTA
579199 T-TT-GTTTA
1 TGTTCGTTTA
579207 TGTTCG--TA
1 TGTTCGTTTA
579215 T-TT-GTTTA
1 TGTTCGTTTA
579223 TGTTCGTTTA
1 TGTTCGTTTA
579233 T
1 T
579234 TTATTAAATG
Statistics
Matches: 35, Mismatches: 0, Indels: 16
0.69 0.00 0.31
Matches are distributed among these distances:
6 2 0.06
7 4 0.11
8 12 0.34
9 4 0.11
10 13 0.37
ACGTcount: A:0.11, C:0.08, G:0.19, T:0.62
Consensus pattern (10 bp):
TGTTCGTTTA
Found at i:581896 original size:2 final size:2
Alignment explanation
Indices: 581889--581956 Score: 136
Period size: 2 Copynumber: 34.0 Consensus size: 2
581879 TAAACATACA
581889 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
581931 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
581957 TCCAATTTAA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 66 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:606270 original size:5 final size:5
Alignment explanation
Indices: 606260--606285 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
606250 TTATATTACA
606260 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
606286 TGAATTAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:606420 original size:21 final size:23
Alignment explanation
Indices: 606394--606445 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 23
606384 AATGAAAGTG
606394 TTTTTC-TAAGTTAAAGATTATT
1 TTTTTCATAAGTTAAAGATTATT
*
606416 TTTTCTCATAAGTTAGAGATTATT
1 TTTT-TCATAAGTTAAAGATTATT
606440 TTTTTC
1 TTTTTC
606446 TCATAATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 4 0.15
23 4 0.15
24 19 0.70
ACGTcount: A:0.27, C:0.08, G:0.10, T:0.56
Consensus pattern (23 bp):
TTTTTCATAAGTTAAAGATTATT
Found at i:606430 original size:24 final size:25
Alignment explanation
Indices: 606400--606451 Score: 88
Period size: 24 Copynumber: 2.1 Consensus size: 25
606390 AGTGTTTTTC
606400 TAAGTTAAAGATTA-TTTTTTCTCA
1 TAAGTTAAAGATTATTTTTTTCTCA
*
606424 TAAGTTAGAGATTATTTTTTTCTCA
1 TAAGTTAAAGATTATTTTTTTCTCA
606449 TAA
1 TAA
606452 TAAATTAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.50
Consensus pattern (25 bp):
TAAGTTAAAGATTATTTTTTTCTCA
Found at i:610709 original size:41 final size:41
Alignment explanation
Indices: 610652--610734 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
610642 AATTGATAAA
*
610652 TGCTTTGCTATTTGAAACTGTGGCCAACAAGTTACATGCTC
1 TGCTTTGCTATTTGAAACTGTAGCCAACAAGTTACATGCTC
610693 TGCTTTGCTATTTGAAACTGTAGCCAACAAGTTACATGCTC
1 TGCTTTGCTATTTGAAACTGTAGCCAACAAGTTACATGCTC
610734 T
1 T
610735 TAAAACTTGA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (41 bp):
TGCTTTGCTATTTGAAACTGTAGCCAACAAGTTACATGCTC
Found at i:613371 original size:28 final size:28
Alignment explanation
Indices: 613332--613385 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
613322 CTTTTATTGT
*
613332 TATTTTAATTTGACTACTA-ATTTATGA
1 TATTTTAATTTGACCACTAGATTTATGA
* *
613359 TATTTTCATTTTGGCCACTAGATTTAT
1 TATTTT-AATTTGACCACTAGATTTAT
613386 TGGGTTAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 6 0.27
28 10 0.45
29 6 0.27
ACGTcount: A:0.28, C:0.11, G:0.09, T:0.52
Consensus pattern (28 bp):
TATTTTAATTTGACCACTAGATTTATGA
Found at i:616568 original size:29 final size:29
Alignment explanation
Indices: 616526--616584 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
616516 GGGAACGAGA
616526 AGACATAGCTCTCACAATGAAATGGATGC
1 AGACATAGCTCTCACAATGAAATGGATGC
616555 AGACATAGCTCTCACAATGAAATGGATGC
1 AGACATAGCTCTCACAATGAAATGGATGC
616584 A
1 A
616585 ACAGAACTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (29 bp):
AGACATAGCTCTCACAATGAAATGGATGC
Found at i:619470 original size:36 final size:36
Alignment explanation
Indices: 619440--619507 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
619430 GTTTTTCTTG
619440 AAACAAATTTTATCTCGCTTGAGATAGTTTTATTAA
1 AAACAAATTTTATCTCGCTTGAGATAGTTTTATTAA
* *
619476 AAACAAATTTTGTCTCGCTTGAGACA-TTTTAT
1 AAACAAATTTTATCTCGCTTGAGATAGTTTTAT
619508 CTCGGAATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 6 0.20
36 24 0.80
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41
Consensus pattern (36 bp):
AAACAAATTTTATCTCGCTTGAGATAGTTTTATTAA
Found at i:619763 original size:67 final size:70
Alignment explanation
Indices: 619650--619780 Score: 178
Period size: 67 Copynumber: 1.9 Consensus size: 70
619640 AAAATTTACT
* * * * *
619650 ATCTTTGAGATCGTTTCTCTTGAAACAAATCTTATTTTTCTTGAGACATTTTCTCATGAAACAAT
1 ATCTTTGAGATCATTTCCCTTGAAACAAATCTTATGTCTCTTGAGACAGTTTCTCATGAAACAAT
619715 AAATC
66 AAATC
* *
619720 ATCTTTGAG-TCATTTCCCTTGAAACGAAT-TT-TGTCTCTTGAGACAGTTTCTCTTGAAACAA
1 ATCTTTGAGATCATTTCCCTTGAAACAAATCTTATGTCTCTTGAGACAGTTTCTCATGAAACAA
619781 ATCTTTGAGT
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
67 26 0.48
68 2 0.04
69 17 0.31
70 9 0.17
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.40
Consensus pattern (70 bp):
ATCTTTGAGATCATTTCCCTTGAAACAAATCTTATGTCTCTTGAGACAGTTTCTCATGAAACAAT
AAATC
Found at i:619777 original size:34 final size:35
Alignment explanation
Indices: 619654--619787 Score: 107
Period size: 34 Copynumber: 3.9 Consensus size: 35
619644 TTTACTATCT
* *
619654 TTGAGATC-GTTTCTCTTGAAACAAATCTTATTTTTC
1 TTGAGA-CAGTTTCTCTTGAAACAAATCTT-TGTCTC
* * ** **
619690 TTGAGACATTTTCTCATGAAAC-AATAAATCATCT-
1 TTGAGACAGTTTCTCTTGAAACAAAT-CTTTGTCTC
* * *
619724 TTGAGTCA-TTTCCCTTGAAACGAAT-TTTGTCTC
1 TTGAGACAGTTTCTCTTGAAACAAATCTTTGTCTC
619757 TTGAGACAGTTTCTCTTGAAACAAATCTTTG
1 TTGAGACAGTTTCTCTTGAAACAAATCTTTG
619788 AGTCTGTTCC
Statistics
Matches: 76, Mismatches: 16, Indels: 13
0.72 0.15 0.12
Matches are distributed among these distances:
32 4 0.05
33 18 0.24
34 25 0.33
35 10 0.13
36 19 0.25
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (35 bp):
TTGAGACAGTTTCTCTTGAAACAAATCTTTGTCTC
Found at i:620580 original size:131 final size:134
Alignment explanation
Indices: 620344--620696 Score: 370
Period size: 131 Copynumber: 2.7 Consensus size: 134
620334 AAACCATTAT
* * * *
620344 TCCTAAAGATGGTCTGCCGTTCTCATCACGTAGGAATCGTGTCATCCCCCGACCAGATCTTCTCA
1 TCCTAAAGATGGCCTGCCGTTCTCATCACGTAGGAACCGTGCCATCCCCCGACCAGACCTTCTCA
620409 TCACGTAGGAGCCGCGTCAACCCTAGATAACATGTCGTCCTCATCACGTAGGAA-CTGTGTTATC
66 TCACGTAGGAGCCGCGTCAACCCTAGATAACATGTCGTCCTCATCACGTAGGAATC-GTGTTATC
620473 AC-CC
130 ACACC
* *
620477 TCCTAAAGATGGCCTGCCG-TCATCATCGC-TAGGAACCGTGCCA-CCCCCGACTAGACC-TCTT
1 TCCTAAAGATGGCCTGCCGTTC-TCATCACGTAGGAACCGTGCCATCCCCCGACCAGACCTTC-T
* *
620538 CATCACGTAGGAGCCGTGTC-ACCCATAGATAACCA-GTCGTCCTCATCGCGTAGGAATCGTGTT
64 CATCACGTAGGAGCCGCGTCAACCC-TAGATAA-CATGTCGTCCTCATCACGTAGGAATCGTGTT
* **
620601 ATCGCATT
127 ATCACACC
* * * * * * * *
620609 TCCTAAAGATGGCCAGAAC--TCTTCATCAAGTATG-ACCAATGTCATCCCCCGACCAGATCTCC
1 TCCTAAAGATGGCCTG-CCGTTC-TCATCACGTAGGAACC-GTGCCATCCCCCGACCAGACCTTC
*
620671 TCATCACGTAGGAGCCGAGTC-ACCCT
63 TCATCACGTAGGAGCCGCGTCAACCCT
620697 TAGACTACCA
Statistics
Matches: 186, Mismatches: 23, Indels: 22
0.81 0.10 0.10
Matches are distributed among these distances:
130 6 0.03
131 68 0.37
132 42 0.23
133 33 0.18
134 36 0.19
135 1 0.01
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.24
Consensus pattern (134 bp):
TCCTAAAGATGGCCTGCCGTTCTCATCACGTAGGAACCGTGCCATCCCCCGACCAGACCTTCTCA
TCACGTAGGAGCCGCGTCAACCCTAGATAACATGTCGTCCTCATCACGTAGGAATCGTGTTATCA
CACC
Found at i:622422 original size:21 final size:21
Alignment explanation
Indices: 622377--622427 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
622367 ATTTTTATTT
*
622377 TATTTCATTACATACACATGC
1 TATTTCATTACATACACATAC
622398 TATTTCATATAC-T-CACATAC
1 TATTTCAT-TACATACACATAC
622418 ATATTT-ATTA
1 -TATTTCATTA
622428 AATTTGTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 2 0.07
20 8 0.30
21 14 0.52
22 3 0.11
ACGTcount: A:0.35, C:0.20, G:0.02, T:0.43
Consensus pattern (21 bp):
TATTTCATTACATACACATAC
Found at i:622458 original size:2 final size:2
Alignment explanation
Indices: 622453--622511 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
622443 TTTTATGTTC
622453 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
622495 AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
622512 CTAATGTATA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:633224 original size:15 final size:16
Alignment explanation
Indices: 633192--633232 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
633182 ATATTATAAG
633192 TAAATAT-AATATATT
1 TAAATATAAATATATT
*
633207 TAAATATAAATTTA-T
1 TAAATATAAATATATT
633222 TAAAGTATAAA
1 TAAA-TATAAA
633233 AGTATAGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (16 bp):
TAAATATAAATATATT
Found at i:635059 original size:19 final size:20
Alignment explanation
Indices: 635021--635059 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
635011 ATATATATAT
* *
635021 TTAAATAAACTCGAACAATA
1 TTAAATAAAATCGAAAAATA
635041 TTAAA-AAAATCGAAAAATA
1 TTAAATAAAATCGAAAAATA
635060 ATATAAAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.62, C:0.10, G:0.05, T:0.23
Consensus pattern (20 bp):
TTAAATAAAATCGAAAAATA
Found at i:638022 original size:48 final size:48
Alignment explanation
Indices: 637883--638025 Score: 157
Period size: 48 Copynumber: 3.0 Consensus size: 48
637873 CAGCACTCCG
* * * * * *
637883 AGCACCTCCTCCCGGAAGACAAGAATCTGACAACACAAGTAAAGGTTT
1 AGCACCTTCTCCCGGAACACAAGAATCCGAAAACACAACTAAAGGTCT
*
637931 AGCA-CTTCCTCCCGGGACACAAGAATCC-AATAACACAACTAAAGGTCT
1 AGCACCTT-CTCCCGGAACACAAGAATCCGAA-AACACAACTAAAGGTCT
* *
637979 AGCACCTTCTCCTGGAACACAAGAATCCGAAAACTCGAA-TAAAGGTC
1 AGCACCTTCTCCCGGAACACAAGAATCCGAAAACAC-AACTAAAGGTC
638026 CAGGCGTACG
Statistics
Matches: 80, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
47 3 0.04
48 70 0.88
49 7 0.09
ACGTcount: A:0.38, C:0.29, G:0.17, T:0.17
Consensus pattern (48 bp):
AGCACCTTCTCCCGGAACACAAGAATCCGAAAACACAACTAAAGGTCT
Found at i:639170 original size:100 final size:100
Alignment explanation
Indices: 638997--639197 Score: 291
Period size: 100 Copynumber: 2.0 Consensus size: 100
638987 TTGTTCAACC
* *
638997 GCATCATTCTATAACCTATCCCTAACTTAAAACTCTAAATTATAAAACCTAAACCCCACAACCTT
1 GCATCACTCTATAACCTATCCCTAACTTAAAACTCTAAATTATAAAACCTAAACCCCACAACATT
* *
639062 TAAACAATAAGCCTTGTACCTTAAACCCTAACTTA
66 TAAACAATAAGCCTTGTACCCTAAAACCTAACTTA
* * *
639097 GCATCACTCTAT-ACC-ATACCCTCAACTT-AAACCCTTAAATTATAAATCCTGAACCCCACAAC
1 GCATCACTCTATAACCTAT-CCCT-AACTTAAAACTC-TAAATTATAAAACCTAAACCCCACAAC
639159 ATTTAAACAATAAGCCTTGTACCCTAAAACCTAACTTA
63 ATTTAAACAATAAGCCTTGTACCCTAAAACCTAACTTA
639197 G
1 G
639198 GATTTATAAT
Statistics
Matches: 91, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
98 2 0.02
99 12 0.13
100 77 0.85
ACGTcount: A:0.39, C:0.30, G:0.04, T:0.27
Consensus pattern (100 bp):
GCATCACTCTATAACCTATCCCTAACTTAAAACTCTAAATTATAAAACCTAAACCCCACAACATT
TAAACAATAAGCCTTGTACCCTAAAACCTAACTTA
Found at i:652363 original size:16 final size:16
Alignment explanation
Indices: 652339--652389 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
652329 GGTCTCCAAC
*
652339 GTTTATGTTCGTTTAT
1 GTTTGTGTTCGTTTAT
*
652355 GTTTGTGTTCATTTAT
1 GTTTGTGTTCGTTTAT
* *
652371 GTTCGCGTTCGTTTAT
1 GTTTGTGTTCGTTTAT
652387 GTT
1 GTT
652390 CGTTTATTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.10, C:0.10, G:0.22, T:0.59
Consensus pattern (16 bp):
GTTTGTGTTCGTTTAT
Found at i:652390 original size:16 final size:16
Alignment explanation
Indices: 652345--652391 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
652335 CAACGTTTAT
* *
652345 GTTCGTTTATGTTTGT
1 GTTCGTTTATGTTCGC
*
652361 GTTCATTTATGTTCGC
1 GTTCGTTTATGTTCGC
652377 GTTCGTTTATGTTCG
1 GTTCGTTTATGTTCG
652392 TTTATTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.09, C:0.13, G:0.23, T:0.55
Consensus pattern (16 bp):
GTTCGTTTATGTTCGC
Found at i:656527 original size:2 final size:2
Alignment explanation
Indices: 656520--656549 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
656510 TTATTCATAC
656520 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
656550 TAAGCTCTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:656754 original size:28 final size:28
Alignment explanation
Indices: 656684--656747 Score: 128
Period size: 28 Copynumber: 2.3 Consensus size: 28
656674 CCACATAATA
656684 GTTGCCACCTTAATTTGTATTGTAAGCT
1 GTTGCCACCTTAATTTGTATTGTAAGCT
656712 GTTGCCACCTTAATTTGTATTGTAAGCT
1 GTTGCCACCTTAATTTGTATTGTAAGCT
656740 GTTGCCAC
1 GTTGCCAC
656748 TTCAATTAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (28 bp):
GTTGCCACCTTAATTTGTATTGTAAGCT
Found at i:658861 original size:7 final size:7
Alignment explanation
Indices: 658849--658939 Score: 182
Period size: 7 Copynumber: 13.0 Consensus size: 7
658839 TAAAAAAGAA
658849 TACGCCT
1 TACGCCT
658856 TACGCCT
1 TACGCCT
658863 TACGCCT
1 TACGCCT
658870 TACGCCT
1 TACGCCT
658877 TACGCCT
1 TACGCCT
658884 TACGCCT
1 TACGCCT
658891 TACGCCT
1 TACGCCT
658898 TACGCCT
1 TACGCCT
658905 TACGCCT
1 TACGCCT
658912 TACGCCT
1 TACGCCT
658919 TACGCCT
1 TACGCCT
658926 TACGCCT
1 TACGCCT
658933 TACGCCT
1 TACGCCT
658940 AAGCTCTAGG
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 84 1.00
ACGTcount: A:0.14, C:0.43, G:0.14, T:0.29
Consensus pattern (7 bp):
TACGCCT
Found at i:662930 original size:21 final size:20
Alignment explanation
Indices: 662905--662957 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
662895 ATTTTCTTTA
* *
662905 TTATTTATTATTTTTATTGTT
1 TTATTTATT-TTATTATTATT
662926 TTATTTAATTTTATTATTATT
1 TTATTT-ATTTTATTATTATT
*
662947 TAATTTATTTT
1 TTATTTATTTT
662958 GCAATTTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 20 0.71
22 3 0.11
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (20 bp):
TTATTTATTTTATTATTATT
Found at i:667485 original size:36 final size:36
Alignment explanation
Indices: 667428--667529 Score: 125
Period size: 36 Copynumber: 2.8 Consensus size: 36
667418 TAACATTTCC
* *
667428 AAACAAATTTTGTCTCACTTGAGACATTTTTGC-TAA
1 AAACAAATTTTGCCTCACTTGAGACAATTTT-CTTAA
* *
667464 AAATAAATTTTGCCTCGCTTGAGACAATTTTCTTAA
1 AAACAAATTTTGCCTCACTTGAGACAATTTTCTTAA
* * *
667500 AAACAAATTTCGTCTCACTGGAGACAATTT
1 AAACAAATTTTGCCTCACTTGAGACAATTT
667530 CTGAAATTGT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
35 1 0.02
36 55 0.98
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (36 bp):
AAACAAATTTTGCCTCACTTGAGACAATTTTCTTAA
Found at i:667644 original size:39 final size:39
Alignment explanation
Indices: 667566--668022 Score: 713
Period size: 39 Copynumber: 11.8 Consensus size: 39
667556 TTGATTAACT
* * *
667566 TTGAGATTGTTTCTCTC-AAA-ACAA-ATTTTATCTCGC
1 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGC
667602 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGC
1 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGC
* *
667641 TTGAGATAGTTTCCCTCGAAACATAAGATTTTGTCTCGC
1 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGC
* * *
667680 TTGAGATAGTTTCCCTCGAAGCAAAATATTTTGTCTCGC
1 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGC
*
667719 TTGAGATAGTTTCCCTCGAAGCAAAAGATTTTATCTCGC
1 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGC
667758 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGC
1 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGC
667797 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGC
1 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGC
* *
667836 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTGTATCGC
1 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGC
* * ***
667875 TTGAGATAGTTTCTCTCGAAACAGAAGATTTTGGATCGC
1 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGC
*
667914 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATATCGC
1 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGC
*
667953 TTGAGATAGTTTTCCTCGAAACAAAAGATTTTATCTCGC
1 TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGC
* *
667992 TTGAGATAGTTTCCCTTGAAACAAAAAATTT
1 TTGAGATAGTTTCCCTCGAAACAAAAGATTT
668023 AAAGAAACTA
Statistics
Matches: 393, Mismatches: 25, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
36 15 0.04
37 3 0.01
38 3 0.01
39 372 0.95
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (39 bp):
TTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTCGC
Found at i:669648 original size:21 final size:20
Alignment explanation
Indices: 669624--669663 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
669614 TTTGTTATTT
* *
669624 TTATTCTTTTATTTAATTTTA
1 TTATTATTTAATTT-ATTTTA
669645 TTATTATTTAATTTATTTT
1 TTATTATTTAATTTATTTT
669664 GCAATTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (20 bp):
TTATTATTTAATTTATTTTA
Found at i:671567 original size:31 final size:31
Alignment explanation
Indices: 671532--671592 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
671522 CAATTACGTC
*
671532 GGGACCATATTACAAATAGACTAAATGTTGA
1 GGGACCATATTACAAACAGACTAAATGTTGA
* *
671563 GGGACTATATTACAAACGGACTAAATGTTG
1 GGGACCATATTACAAACAGACTAAATGTTG
671593 GAGGATTGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.26
Consensus pattern (31 bp):
GGGACCATATTACAAACAGACTAAATGTTGA
Found at i:672843 original size:21 final size:21
Alignment explanation
Indices: 672817--672949 Score: 73
Period size: 20 Copynumber: 6.5 Consensus size: 21
672807 CAGTTCCCAG
672817 AATCGCAACGCGATTATGAAT
1 AATCGCAACGCGATTATGAAT
*
672838 AATCGCAATGCGA-TA-GTACA-
1 AATCGCAACGCGATTATG-A-AT
** * **
672858 AATTCGCATTGCGATTTTCCAT
1 AA-TCGCAACGCGATTATGAAT
*
672880 AATCGCAACGCGAATATGAA-
1 AATCGCAACGCGATTATGAAT
* **
672900 AATCGCAACACGAACAT--AT
1 AATCGCAACGCGATTATGAAT
* *
672919 AAATCGCAACGCGATTCTGACT
1 -AATCGCAACGCGATTATGAAT
672941 -ATCGCAACG
1 AATCGCAACG
672950 AGTATCCGTA
Statistics
Matches: 84, Mismatches: 18, Indels: 21
0.68 0.15 0.17
Matches are distributed among these distances:
18 1 0.01
19 1 0.01
20 42 0.50
21 36 0.43
22 4 0.05
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (21 bp):
AATCGCAACGCGATTATGAAT
Found at i:672905 original size:20 final size:20
Alignment explanation
Indices: 672880--673155 Score: 191
Period size: 20 Copynumber: 13.7 Consensus size: 20
672870 GATTTTCCAT
** *
672880 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATCCGTA
* **
672900 AATCGCAACACGAA-CATATA
1 AATCGCAACGCGAATC-CGTA
* *
672920 AATCGCAACGCGATTCTG-A
1 AATCGCAACGCGAATCCGTA
* * *
672939 CTATCGCAACGAGTATCCGTAA
1 -AATCGCAACGCGAATCCGT-A
*
672961 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
*
672981 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGAATCCGT-A
* *
673002 AATAGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
673022 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATCCGTA
* *
673042 AATCGCAACGCGTATCTGTA
1 AATCGCAACGCGAATCCGTA
* *
673062 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATCCGTA
* * * *
673082 AATCGTAATGCGTATCTGTA
1 AATCGCAACGCGAATCCGTA
*
673102 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGAATCCGT-A
* * * *
673123 AATCGTAACGTGTACCCGTA
1 AATCGCAACGCGAATCCGTA
673143 AATCGCAACGCGA
1 AATCGCAACGCGA
673156 TTTTTAAAGC
Statistics
Matches: 195, Mismatches: 50, Indels: 22
0.73 0.19 0.08
Matches are distributed among these distances:
19 1 0.01
20 144 0.74
21 49 0.25
22 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAATCCGTA
Found at i:672970 original size:81 final size:81
Alignment explanation
Indices: 672880--673152 Score: 268
Period size: 81 Copynumber: 3.4 Consensus size: 81
672870 GATTTTCCAT
* * * * * * *
672880 AATCGCAACGCGAATATGAAAATCGCAAC-ACGA-ACATATAAATCGCAACGCG-ATTC-TGACT
1 AATCGCAACGCGTATCTGTAAATCGCAACGACAATACATA-AAATAGCAACGCGTATCCGT-A-A
* *
672941 ATCGCAACGAGTATCCGTAA
63 ATCGCAACGAGAATACGT-A
* *
672961 AATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAAATAGCAACGCGTATCCGTAAATC
1 AATCGCAACGCGTATCTGTAAATCGCAACGACAATACATAAAATAGCAACGCGTATCCGTAAATC
673026 GCAACGAGAATACGTA
66 GCAACGAGAATACGTA
* * * * * *
673042 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGT-AAATCGTAATGCGTATCTGTAAATC
1 AATCGCAACGCGTATCTGTAAATCGCAACGACAATACATAAAATAGCAACGCGTATCCGTAAATC
*
673106 GCAACGACAATACGTAA
66 GCAACGAGAATACGT-A
* * * *
673123 AATCGTAACGTGTACCCGTAAATCGCAACG
1 AATCGCAACGCGTATCTGTAAATCGCAACG
673153 CGATTTTTAA
Statistics
Matches: 165, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
80 35 0.21
81 90 0.55
82 31 0.19
83 8 0.05
84 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.19
Consensus pattern (81 bp):
AATCGCAACGCGTATCTGTAAATCGCAACGACAATACATAAAATAGCAACGCGTATCCGTAAATC
GCAACGAGAATACGTA
Found at i:672972 original size:41 final size:41
Alignment explanation
Indices: 672941--673152 Score: 302
Period size: 41 Copynumber: 5.2 Consensus size: 41
672931 GATTCTGACT
* *
672941 ATCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
* *
672982 ATCGCAACGACAATACGTAAAATAGCAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
*
673023 ATCGCAACGAGAATACGT-AAATCGCAACGCGTATCTGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
* * *
673063 ATCGCAACGAGAATACGT-AAATCGTAATGCGTATCTGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
* * * *
673103 ATCGCAACGACAATACGTAAAATCGTAACGTGTACCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
673144 ATCGCAACG
1 ATCGCAACG
673153 CGATTTTTAA
Statistics
Matches: 156, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 75 0.48
41 81 0.52
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.20
Consensus pattern (41 bp):
ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
Found at i:673063 original size:40 final size:41
Alignment explanation
Indices: 672880--673152 Score: 299
Period size: 40 Copynumber: 6.7 Consensus size: 41
672870 GATTTTCCAT
* * * *
672880 AATCGCAACGCGAATATGAAAATCGCAAC-ACG-A-ACATATA
1 AATCGCAACGCGTATCTGTAAATCGCAACGA-GAATACGTA-A
* * *
672920 AATCGCAACGCG-ATTCTG-ACTATCGCAACGAGTATCCGTAA
1 AATCGCAACGCGTA-TCTGTA-AATCGCAACGAGAATACGTAA
* *
672961 AATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAA
1 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTAA
* *
673002 AATAGCAACGCGTATCCGTAAATCGCAACGAGAATACGT-A
1 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTAA
673042 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGT-A
1 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTAA
* * *
673082 AATCGTAATGCGTATCTGTAAATCGCAACGACAATACGTAA
1 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTAA
* * * *
673123 AATCGTAACGTGTACCCGTAAATCGCAACG
1 AATCGCAACGCGTATCTGTAAATCGCAACG
673153 CGATTTTTAA
Statistics
Matches: 205, Mismatches: 20, Indels: 15
0.85 0.08 0.06
Matches are distributed among these distances:
39 2 0.01
40 99 0.48
41 99 0.48
42 5 0.02
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.19
Consensus pattern (41 bp):
AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTAA
Found at i:673755 original size:21 final size:21
Alignment explanation
Indices: 673694--673772 Score: 94
Period size: 20 Copynumber: 3.9 Consensus size: 21
673684 TTCTAAACTT
673694 AAAATCGCAAC-ATGA-AAATG
1 AAAATCGCAACGA-GAGAAATG
673714 AAAATCGCAAC-ACGA-AAATG
1 AAAATCGCAACGA-GAGAAATG
**
673734 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAACGAGAGAAATG
673755 AAAATCGCAACGAGAGAA
1 AAAATCGCAACGAGAGAA
673773 TCGCAACGCG
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
20 30 0.58
21 22 0.42
ACGTcount: A:0.52, C:0.18, G:0.19, T:0.11
Consensus pattern (21 bp):
AAAATCGCAACGAGAGAAATG
Found at i:673795 original size:19 final size:19
Alignment explanation
Indices: 673694--673815 Score: 92
Period size: 20 Copynumber: 6.5 Consensus size: 19
673684 TTCTAAACTT
**
673694 AAAATCGCAACATGAAAATG
1 AAAATCGCAACGCG-AAATG
*
673714 AAAATCGCAACACGAAAATG
1 AAAATCGCAACGCG-AAATG
** *
673734 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAAC--GCGAAATG
673755 AAAATCGCAA--CG--A-G
1 AAAATCGCAACGCGAAATG
*
673769 AGAATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
**
673788 AAAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAATG
673807 AAAATCGCA
1 AAAATCGCA
673816 TTGCGATTTT
Statistics
Matches: 83, Mismatches: 12, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
14 10 0.12
15 1 0.01
16 2 0.02
17 1 0.01
18 1 0.01
19 26 0.31
20 28 0.34
21 13 0.16
22 1 0.01
ACGTcount: A:0.49, C:0.21, G:0.19, T:0.11
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATG
Found at i:673899 original size:20 final size:19
Alignment explanation
Indices: 673816--673922 Score: 109
Period size: 20 Copynumber: 5.8 Consensus size: 19
673806 CAAAATCGCA
673816 TTGCGATTTTCATTTCTCG
1 TTGCGATTTTCATTTCTCG
*
673835 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCTCG
*
673854 -TACGA--TTC---TCTCG
1 TTGCGATTTTCATTTCTCG
** *
673867 TTGCGATAGTCATTTCCGCG
1 TTGCGATTTTCATTT-CTCG
673887 TTGCGATTTTCATTCTCTCG
1 TTGCGATTTTCATT-TCTCG
673907 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
673923 AACCAAAAGA
Statistics
Matches: 71, Mismatches: 9, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
13 4 0.06
14 4 0.06
16 5 0.07
18 4 0.06
19 21 0.30
20 32 0.45
21 1 0.01
ACGTcount: A:0.12, C:0.23, G:0.18, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCTCG
Found at i:675963 original size:21 final size:21
Alignment explanation
Indices: 675939--676005 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
675929 TCATTTCTCG
675939 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
675960 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
675981 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
676002 AGAG
1 AGAG
676006 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:677962 original size:24 final size:24
Alignment explanation
Indices: 677935--677981 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
677925 CAAAATCCGA
677935 GTATTGACCAAGATCAAAGTTCGG
1 GTATTGACCAAGATCAAAGTTCGG
* *
677959 GTATTGACCAAGGTCAAATTTCG
1 GTATTGACCAAGATCAAAGTTCG
677982 AATACTGACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (24 bp):
GTATTGACCAAGATCAAAGTTCGG
Found at i:677990 original size:24 final size:24
Alignment explanation
Indices: 677939--677990 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
677929 ATCCGAGTAT
** *
677939 TGACCAAGATCAAAGTTCGGGTAT
1 TGACCAAGATCAAAGTTCGAATAC
* *
677963 TGACCAAGGTCAAATTTCGAATAC
1 TGACCAAGATCAAAGTTCGAATAC
677987 TGAC
1 TGAC
677991 TAGTACTCAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (24 bp):
TGACCAAGATCAAAGTTCGAATAC
Found at i:678929 original size:20 final size:20
Alignment explanation
Indices: 678834--679006 Score: 157
Period size: 20 Copynumber: 8.6 Consensus size: 20
678824 TAGTCAGAAT
*
678834 CTCGTTGCGATTTACAGATA
1 CTCGTTGCGATTTACGGATA
* * * *
678854 CGCATTGCGATTTACGTATT
1 CTCGTTGCGATTTACGGATA
* *
678874 CTCGTTACGATTTACAGATA
1 CTCGTTGCGATTTACGGATA
* * *
678894 CGCGTTGCGATTTACGTATT
1 CTCGTTGCGATTTACGGATA
*
678914 CTCGTTGTGATTTACGGATA
1 CTCGTTGCGATTTACGGATA
* * * *
678934 CGCGTTACGATTTTACGTATT
1 CTCGTTGCGA-TTTACGGATA
* * *
678955 GTCATTGTGATTTACGGATA
1 CTCGTTGCGATTTACGGATA
*
678975 CGCGTTGCGATTTTACGGATA
1 CTCGTTGCGA-TTTACGGATA
678996 CTCGTTGCGAT
1 CTCGTTGCGAT
679007 AGTCAGAATC
Statistics
Matches: 114, Mismatches: 37, Indels: 4
0.74 0.24 0.03
Matches are distributed among these distances:
20 82 0.72
21 32 0.28
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.38
Consensus pattern (20 bp):
CTCGTTGCGATTTACGGATA
Found at i:678963 original size:41 final size:40
Alignment explanation
Indices: 678833--679067 Score: 231
Period size: 40 Copynumber: 5.8 Consensus size: 40
678823 ATAGTCAGAA
* *
678833 TCTCGTTGCGATTTACAGATACGCATTGCGATTTACGTAT
1 TCTCGTTGTGATTTACAGATACGCGTTGCGATTTACGTAT
**
678873 TCTCGTTACGATTTACAGATACGCGTTGCGATTTACGTAT
1 TCTCGTTGTGATTTACAGATACGCGTTGCGATTTACGTAT
* *
678913 TCTCGTTGTGATTTACGGATACGCGTTACGATTTTACGTAT
1 TCTCGTTGTGATTTACAGATACGCGTTGCGA-TTTACGTAT
* * * *
678954 TGTCATTGTGATTTACGGATACGCGTTGCGATTTTACGGAT
1 TCTCGTTGTGATTTACAGATACGCGTTGCGA-TTTACGTAT
* * * ** *
678995 ACTCGTTGCGATAGT-CAGA-ATCGCGTTGCGATTTATATGT
1 TCTCGTTGTGAT-TTACAGATA-CGCGTTGCGATTTACGTAT
* * * * *
679035 TCACGTTGCGATTTTCATATTCGCGTTGCGATT
1 TCTCGTTGTGATTTACAGATACGCGTTGCGATT
679068 ATGGAAAATC
Statistics
Matches: 165, Mismatches: 25, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 96 0.58
41 67 0.41
42 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.39
Consensus pattern (40 bp):
TCTCGTTGTGATTTACAGATACGCGTTGCGATTTACGTAT
Found at i:679041 original size:20 final size:20
Alignment explanation
Indices: 679018--679067 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
679008 GTCAGAATCG
*
679018 CGTTGCGATTTAT-ATGTTCA
1 CGTTGCGATTT-TCATATTCA
*
679038 CGTTGCGATTTTCATATTCG
1 CGTTGCGATTTTCATATTCA
679058 CGTTGCGATT
1 CGTTGCGATT
679068 ATGGAAAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 1 0.04
20 26 0.96
ACGTcount: A:0.16, C:0.18, G:0.22, T:0.44
Consensus pattern (20 bp):
CGTTGCGATTTTCATATTCA
Found at i:679132 original size:21 final size:19
Alignment explanation
Indices: 679013--679130 Score: 74
Period size: 21 Copynumber: 5.8 Consensus size: 19
679003 CGATAGTCAG
679013 AATCGCGTTGCGATTTATAT
1 AATCGCGTTGCGATTT-TAT
** *
679033 GTTCACGTTGCGATTTTCAT
1 AATCGCGTTGCGATTTT-AT
* * *
679053 ATTCGCGTTGCGATTATGGAA
1 AATCGCGTTGCGATT-T-TAT
**
679074 AATCGCAATGCGAATTTGTAT
1 AATCGCGTTGCG-ATTT-TAT
* *
679095 TATCGCATTGCGATTCTTCAT
1 AATCGCGTTGCGATT-TT-AT
679116 AATCGCGTTGCGATT
1 AATCGCGTTGCGATT
679131 CTGGGAACTG
Statistics
Matches: 76, Mismatches: 16, Indels: 11
0.74 0.16 0.11
Matches are distributed among these distances:
19 1 0.01
20 32 0.42
21 40 0.53
22 3 0.04
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (19 bp):
AATCGCGTTGCGATTTTAT
Found at i:679166 original size:20 final size:19
Alignment explanation
Indices: 679117--679170 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
679107 ATTCTTCATA
679117 ATCGCGTTGCGATTCTGGG
1 ATCGCGTTGCGATTCTGGG
* **
679136 AACTGATTTGCGATTCTGGAG
1 ATC-GCGTTGCGATTCTGG-G
679157 ATCGCGTTGCGATT
1 ATCGCGTTGCGATT
679171 TTTATTTCGC
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 2 0.07
20 22 0.81
21 3 0.11
ACGTcount: A:0.17, C:0.19, G:0.31, T:0.33
Consensus pattern (19 bp):
ATCGCGTTGCGATTCTGGG
Found at i:695906 original size:336 final size:336
Alignment explanation
Indices: 695289--696288 Score: 1577
Period size: 336 Copynumber: 3.0 Consensus size: 336
695279 TATTAAATTT
*
695289 TAATTTTATTAAAAATGAATAAACATTATTAACTATTGTTAAAAAATAATAATTAATTAATAATA
1 TAATTTTATTAAAAATGAATAAACATTATTAACTGTTGTT-AAAAATAATAATTAA-TAATAATA
695354 ATTCATTTGATCCCTCAATTGTAATTAAAAGTTTATTTTAATATTTTTTTATATTTTTAAACAAT
64 ATTCATTTGATCCCTCAATTGTAATTAAAAGTTTATTTTAATATTTTTTTATATTTTTAAACAAT
* *
695419 TAATTTTAAAAGTCAATAAACTTTTCAAAAAAATATGAAATTTATAAATTTTTAAATTATAAAAT
129 TAATTTTAAAAGTCAATAAATTTTTCAAAAATATAT-AAATTTAT-AATTTTTAAATTATAAAAT
695484 ATTTATCATCATCATCATCATCATTTTGTAAAAGAAATACTGGTTATAAAACTTTTATAAAATTA
192 ATTTATCATCATCATCATCATCATTTTGTAAAAGAAATACTGGTTATAAAACTTTTATAAAATTA
* *
695549 TTCATATTTTAAAATACTTACCCTCAAAGTTTTCCTATAATAGATTATATGTATTGTGTAATTTC
257 TTCATATTTTAAAATACTTACCCTCAAAGTTTTCCTATACTAGATTATACGTATTGTGTAATTTC
* **
695614 ATG-AAAATTTTTAAA
322 ATGCAAAA-ATCAAAA
695629 TAATTTTATTAAAAATGAATAAACATTATTAACTGTTGTTAAAAATAATAATTAATAATAATAAT
1 TAATTTTATTAAAAATGAATAAACATTATTAACTGTTGTTAAAAATAATAATTAATAATAATAAT
* *
695694 TCTTTTGATCCCTCAATTATAATT-AAAGTTTATTTTAATATTTTTTTATATTTTTAAACAATTA
66 TCATTTGATCCCTCAATTGTAATTAAAAGTTTATTTTAATATTTTTTTATATTTTTAAACAATTA
695758 ATTTTAAAAGTCAATAAATTTTTCAAAAATATATAAAATTTATAATTTTTAAATTATAAAATATT
131 ATTTTAAAAGTCAATAAATTTTTCAAAAATATAT-AAATTTATAATTTTTAAATTATAAAATATT
695823 TATCATCATCATCATCATCATTTTGTAAAAGAAATACTGGTTATAAAACTTTTATAAAATTATTC
195 TATCATCATCATCATCATCATTTTGTAAAAGAAATACTGGTTATAAAACTTTTATAAAATTATTC
* *
695888 ATATTTTAAAATACTTACCTTCAAAGTTTTCCTATACTAGATTCTACGTATTGTGTAATTTCATG
260 ATATTTTAAAATACTTACCCTCAAAGTTTTCCTATACTAGATTATACGTATTGTGTAATTTCATG
695953 CAAAAATCAAAA
325 CAAAAATCAAAA
* *
695965 TAATTTTATTAAAAATAAATAAACATTATTAACTGTTGTTAAAAATAATAATTAATGAATTATAA
1 TAATTTTATTAAAAATGAATAAACATTATTAACTGTTGTTAAAAATAATAATTAAT-AATAATAA
* * *
696030 TTAATTTGATCCCTCAATTGTAATTAAAAATTTATTTTAATATTTTTTTTCTATTTTTAAACAAT
65 TTCATTTGATCCCTCAATTGTAATTAAAAGTTTATTTTAATA-TTTTTTTATATTTTTAAACAAT
* **
696095 TAATTTTAAAAGTCAATAAATTTTTCAAAAATATAT-GATTT-TTTTTTTTAAAATTATAAAATA
129 TAATTTTAAAAGTCAATAAATTTTTCAAAAATATATAAATTTATAATTTTT-AAATTATAAAATA
* *
696158 TTTAT--T-GTCATCATCATCATTTTGTAAAAGAAATACTAGTTATAAAA----T-T---A--A-
193 TTTATCATCATCATCATCATCATTTTGTAAAAGAAATACTGGTTATAAAACTTTTATAAAATTAT
*
696209 TCATATTTTAAAATATTTACCCTCAAAGTTTTCCTATACTAGATTATACGTATTGTGTAATTTCA
258 TCATATTTTAAAATACTTACCCTCAAAGTTTTCCTATACTAGATTATACGTATTGTGTAATTTCA
*
696274 TGTAAAAATCAAAA
323 TGCAAAAATCAAAA
696288 T
1 T
696289 TTATCGAGTT
Statistics
Matches: 626, Mismatches: 29, Indels: 27
0.92 0.04 0.04
Matches are distributed among these distances:
323 76 0.12
324 1 0.00
326 1 0.00
329 1 0.00
330 1 0.00
334 39 0.06
335 1 0.00
336 213 0.34
337 135 0.22
338 47 0.08
339 72 0.12
340 39 0.06
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.44
Consensus pattern (336 bp):
TAATTTTATTAAAAATGAATAAACATTATTAACTGTTGTTAAAAATAATAATTAATAATAATAAT
TCATTTGATCCCTCAATTGTAATTAAAAGTTTATTTTAATATTTTTTTATATTTTTAAACAATTA
ATTTTAAAAGTCAATAAATTTTTCAAAAATATATAAATTTATAATTTTTAAATTATAAAATATTT
ATCATCATCATCATCATCATTTTGTAAAAGAAATACTGGTTATAAAACTTTTATAAAATTATTCA
TATTTTAAAATACTTACCCTCAAAGTTTTCCTATACTAGATTATACGTATTGTGTAATTTCATGC
AAAAATCAAAA
Found at i:697024 original size:32 final size:32
Alignment explanation
Indices: 696988--697101 Score: 150
Period size: 32 Copynumber: 3.7 Consensus size: 32
696978 TATATATATA
*
696988 TATATATAATATTTTTTATTTTTTATATTAAT
1 TATATATAATATTTTATATTTTTTATATTAAT
697020 TATATAT-ATA----ATATTTTTTATATTAAT
1 TATATATAATATTTTATATTTTTTATATTAAT
*
697047 TATATATAAT-TATTTATAATTTTTATATTAAT
1 TATATATAATAT-TTTATATTTTTTATATTAAT
*
697079 TATATATAATATTTTTTATTTTT
1 TATATATAATATTTTATATTTTT
697102 CTATTTTTTA
Statistics
Matches: 71, Mismatches: 4, Indels: 14
0.80 0.04 0.16
Matches are distributed among these distances:
27 23 0.32
28 2 0.03
31 3 0.04
32 42 0.59
33 1 0.01
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (32 bp):
TATATATAATATTTTATATTTTTTATATTAAT
Found at i:697025 original size:34 final size:34
Alignment explanation
Indices: 696986--697101 Score: 119
Period size: 27 Copynumber: 3.7 Consensus size: 34
696976 TATATATATA
696986 TATATATATAATATTTTTTATTTTTTATATTAAT
1 TATATATATAATATTTTTTATTTTTTATATTAAT
697020 TATATATAT-A-A-----TATTTTTTATATTAAT
1 TATATATATAATATTTTTTATTTTTTATATTAAT
* * * *
697047 TATATATA-ATTATTTATAATTTTTA-TATTAA-
1 TATATATATAATATTTTTTATTTTTTATATTAAT
697078 T-TATATATAATATTTTTTATTTTT
1 TATATATATAATATTTTTTATTTTT
697102 CTATTTTTTA
Statistics
Matches: 68, Mismatches: 6, Indels: 19
0.73 0.06 0.20
Matches are distributed among these distances:
27 24 0.35
28 1 0.01
30 6 0.09
31 14 0.21
32 7 0.10
33 7 0.10
34 9 0.13
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (34 bp):
TATATATATAATATTTTTTATTTTTTATATTAAT
Found at i:697081 original size:9 final size:10
Alignment explanation
Indices: 697010--697088 Score: 67
Period size: 9 Copynumber: 8.1 Consensus size: 10
697000 TTTTTATTTT
697010 TTATAT-TAA
1 TTATATATAA
697019 TTATATAT-A
1 TTATATATAA
* **
697028 TAATAT-TTT
1 TTATATATAA
697037 TTATAT-TAA
1 TTATATATAA
697046 TTATATATAA
1 TTATATATAA
*
697056 TTATTTATAA
1 TTATATATAA
*
697066 TTTTTATATTAA
1 -TTATATA-TAA
697078 TTATATATAA
1 TTATATATAA
697088 T
1 T
697089 ATTTTTTATT
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
8 1 0.02
9 24 0.43
10 17 0.30
11 11 0.20
12 3 0.05
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TTATATATAA
Found at i:697081 original size:22 final size:23
Alignment explanation
Indices: 697046--697098 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
697036 TTTATATTAA
*
697046 TTATATATAATTATTTATAAT-TT
1 TTATAT-TAATTATATATAATATT
697069 TTATATTAATTATATATAATATT
1 TTATATTAATTATATATAATATT
*
697092 TTTTATT
1 TTATATT
697099 TTTCTATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 13 0.48
23 14 0.52
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATATTAATTATATATAATATT
Found at i:697085 original size:57 final size:59
Alignment explanation
Indices: 696988--697097 Score: 172
Period size: 59 Copynumber: 1.9 Consensus size: 59
696978 TATATATATA
* *
696988 TATATATAATATTTTTTATTTTTTATATTAATTATATATATAATATTTTTTATATTAAT
1 TATATATAATATTTTATAATTTTTATATTAATTATATATATAATATTTTTTATATTAAT
697047 TATATATAAT-TATTTATAATTTTTATATTAA-T-TATATATAATATTTTTTAT
1 TATATATAATAT-TTTATAATTTTTATATTAATTATATATATAATATTTTTTAT
697098 TTTTCTATTT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
57 19 0.40
58 2 0.04
59 27 0.56
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (59 bp):
TATATATAATATTTTATAATTTTTATATTAATTATATATATAATATTTTTTATATTAAT
Found at i:697814 original size:19 final size:19
Alignment explanation
Indices: 697787--697838 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
697777 ACTTTTTTTG
* *
697787 GACCGTTGATTTTGACGCA
1 GACCATTGACTTTGACGCA
697806 GACCATTGACTTTGACGC-
1 GACCATTGACTTTGACGCA
*
697824 -ACCGTTGACTTTGAC
1 GACCATTGACTTTGAC
697839 CAATTCAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
17 14 0.47
19 16 0.53
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (19 bp):
GACCATTGACTTTGACGCA
Found at i:702849 original size:21 final size:20
Alignment explanation
Indices: 702763--702920 Score: 86
Period size: 21 Copynumber: 7.8 Consensus size: 20
702753 AAATGACCAA
**
702763 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
702782 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
702802 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
702822 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
702843 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
702864 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
702884 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
702905 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
702921 ACACATAAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:702952 original size:20 final size:20
Alignment explanation
Indices: 702887--703136 Score: 229
Period size: 20 Copynumber: 12.5 Consensus size: 20
702877 CGATTTTCCA
* ** *
702887 AAATCGCAACGCGAATATGA
1 AAATCGCAACGTGAATCCGT
* *
702907 AAATCGCAACGCGAA-CACAT
1 AAATCGCAACGTGAATC-CGT
*
702927 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGTGAATCCGT
* * *
702947 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGTGAATCCGT
* * *
702967 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGTGAATCCGT
* * *
702987 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGTGAATCCGT
703007 AAATCGCAACGAT-AATCCGT
1 AAATCGCAACG-TGAATCCGT
* *
703027 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGTGAATCCGT
703047 AAATCGCAACGAT-AATCCGT
1 AAATCGCAACG-TGAATCCGT
* *
703067 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGTGAATCCGT
703087 AAATCGCAACGAT-AATCCGT
1 AAATCGCAACG-TGAATCCGT
* *
703107 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGTGAATCCGT
*
703127 AAATCACAAC
1 AAATCGCAAC
703137 ACTGAAATTT
Statistics
Matches: 195, Mismatches: 27, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
20 194 0.99
21 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGTGAATCCGT
Found at i:703854 original size:24 final size:24
Alignment explanation
Indices: 703815--703861 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
703805 AAATTTGGTC
703815 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
703839 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
703862 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:704053 original size:12 final size:12
Alignment explanation
Indices: 704036--704060 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
704026 ATATAATCCT
704036 GAAGAAGAAAAA
1 GAAGAAGAAAAA
704048 GAAGAAGAAAAA
1 GAAGAAGAAAAA
704060 G
1 G
704061 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:706348 original size:19 final size:19
Alignment explanation
Indices: 706326--706665 Score: 398
Period size: 19 Copynumber: 19.4 Consensus size: 19
706316 CGGAAATTAC
*
706326 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
706345 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
706359 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
706379 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
706393 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
706412 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
706431 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
706445 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
706464 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
706483 AATCGCAAT--GACA-G--
1 AATCGCAATGCGAAATGAA
706497 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
706516 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
706535 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
706554 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
706573 AATCGCAA--CGACA-G--
1 AATCGCAATGCGAAATGAA
706587 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
706606 AATCGCAA--CGACA-G--
1 AATCGCAATGCGAAATGAA
706620 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
706639 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
706658 AATCGCAA
1 AATCGCAA
706666 CGAGAGAATC
Statistics
Matches: 278, Mismatches: 12, Indels: 62
0.79 0.03 0.18
Matches are distributed among these distances:
14 57 0.21
15 2 0.01
16 19 0.07
17 18 0.06
18 3 0.01
19 166 0.60
20 13 0.05
ACGTcount: A:0.46, C:0.19, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:706413 original size:33 final size:33
Alignment explanation
Indices: 706326--706687 Score: 234
Period size: 33 Copynumber: 10.5 Consensus size: 33
706316 CGGAAATTAC
* *
706326 AATCGCAACGCGAAATGAAAATCCCAAC-ATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGA-GAA
*
706359 AATCGCAATGCGGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGC-GAAATGAAAATCGCAACGAGAA
706393 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAA
*
706431 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAA
* * *
706464 AATCGCAATGCGAAATGAAAATCGCAATGACAG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAA
706497 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAA
706535 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAA
*
706573 AATCGCAA--CGACA-G--AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAA
*
706606 AATCGCAA--CGACA-G--AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAA
*
706639 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAA
706672 AATCGCAATGCGAAAT
1 AATCGCAATGCGAAAT
706688 TATAAACGCA
Statistics
Matches: 292, Mismatches: 15, Indels: 44
0.83 0.04 0.13
Matches are distributed among these distances:
33 161 0.55
34 32 0.11
35 11 0.04
36 10 0.03
37 3 0.01
38 75 0.26
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.14
Consensus pattern (33 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAA
Found at i:706441 original size:52 final size:52
Alignment explanation
Indices: 706354--706580 Score: 373
Period size: 52 Copynumber: 4.2 Consensus size: 52
706344 AAATCCCAAC
706354 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
706407 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* *
706459 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGACAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
706511 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAGAATCGCAATGCGAA
706568 ATGAAAATCGCAA
1 ATGAAAATCGCAA
706581 CGACAGAATC
Statistics
Matches: 164, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
52 118 0.72
53 16 0.10
54 1 0.01
56 1 0.01
57 28 0.17
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.15
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:706537 original size:123 final size:123
Alignment explanation
Indices: 706393--706665 Score: 444
Period size: 123 Copynumber: 2.2 Consensus size: 123
706383 GCAACGAGAG
*
706393 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCG-CAATGCG
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGA-AAT-GAAAAT-CG
* *
706457 AAATGA-A-AATCGCAATGCGAAATGAAAATCGCAATGACAGAATCGCAATGCGAAATGAA
63 AAACGACAGAATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGCAATGCGAAATGAA
* * *
706516 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAAATGAAAATCGAAA
706581 CGACAGAATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGCAATGCGAAATGAA
66 CGACAGAATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGCAATGCGAAATGAA
706639 AATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAA
706666 CGAGAGAATC
Statistics
Matches: 141, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
121 7 0.05
122 7 0.05
123 127 0.90
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (123 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAAATGAAAATCGAAA
CGACAGAATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGCAATGCGAAATGAA
Found at i:706591 original size:52 final size:55
Alignment explanation
Indices: 706326--706665 Score: 322
Period size: 52 Copynumber: 6.5 Consensus size: 55
706316 CGGAAATTAC
* *
706326 AATCGCAACGCGAAATGAAAATCCCAA--C---ATGAAAATCGCAATGCGGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-GC-GAAATG-A
*
706379 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCGAAATG-A
*
706431 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCGAAATG-A
*
706483 AATCGCAAT--GACA-G--AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCGAAATG-A
*
706535 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-CGACA-G-
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAGCGAAATGA
*
706587 AATCGCAATGCGAAATGAAAATCGCAA--CGACA-G--AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA-GCGAAATG-A
706639 AATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAA
706666 CGAGAGAATC
Statistics
Matches: 263, Mismatches: 6, Indels: 37
0.86 0.02 0.12
Matches are distributed among these distances:
47 8 0.03
48 9 0.03
49 6 0.02
50 6 0.02
51 2 0.01
52 170 0.65
53 24 0.09
54 6 0.02
55 5 0.02
57 27 0.10
ACGTcount: A:0.46, C:0.19, G:0.21, T:0.14
Consensus pattern (55 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAGCGAAATGA
Found at i:706592 original size:14 final size:14
Alignment explanation
Indices: 706573--706627 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
706563 GCGAAATGAA
706573 AATCGCAACGACAG
1 AATCGCAACGACAG
*
706587 AATCGCAATGCGAAATG
1 AATCGCAA--CGACA-G
706604 AAAATCGCAACGACAG
1 --AATCGCAACGACAG
706620 AATCGCAA
1 AATCGCAA
706628 TGCGAAATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 16 0.47
16 5 0.15
17 5 0.15
19 8 0.24
ACGTcount: A:0.45, C:0.24, G:0.20, T:0.11
Consensus pattern (14 bp):
AATCGCAACGACAG
Found at i:706703 original size:52 final size:52
Alignment explanation
Indices: 706516--706687 Score: 242
Period size: 52 Copynumber: 3.3 Consensus size: 52
706506 GCGAAATGAA
* *
706516 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGA-
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAG
* * * *
706567 AAT-GAAAAT-CGCAACGACAGAATCGCAATGCGAAATGAAAATCGCAACGACAG
1 AATCG-CAATGCGAAATGA-A-AATCGCAATGCGAAATGAAAATCGCAACGAGAG
706620 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAG
706672 AATCGCAATGCGAAAT
1 AATCGCAATGCGAAAT
706688 TATAAACGCA
Statistics
Matches: 105, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
50 7 0.07
51 7 0.07
52 77 0.73
53 7 0.07
54 7 0.07
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.14
Consensus pattern (52 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAG
Found at i:706735 original size:19 final size:20
Alignment explanation
Indices: 706694--706743 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
706684 AAATTATAAA
706694 CGCATTGCGATTTTCATTTT
1 CGCATTGCGATTTTCATTTT
706714 CGCATTGCGATTTTCA-TTT
1 CGCATTGCGATTTTCATTTT
706733 CGCATTGCGAT
1 CGCATTGCGAT
706744 AGTCATTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.44
Consensus pattern (20 bp):
CGCATTGCGATTTTCATTTT
Found at i:706869 original size:14 final size:14
Alignment explanation
Indices: 706850--706886 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
706840 CATCAATTAC
706850 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
706864 ACAAATCATCTTTT
1 ACAAATCAACTTTT
706878 ACAAATCAA
1 ACAAATCAA
706887 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:708695 original size:14 final size:14
Alignment explanation
Indices: 708676--708732 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
708666 GCGAAATGAA
*
708676 AATCGCAACGACAG
1 AATCGCAACGAAAG
708690 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
708707 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
708723 AATCGCAACG
1 AATCGCAACG
708733 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:708703 original size:33 final size:33
Alignment explanation
Indices: 708657--708745 Score: 160
Period size: 33 Copynumber: 2.7 Consensus size: 33
708647 GCGAAACCAA
*
708657 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
708690 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
708723 AATCGCAACGCGAAATGAAAATC
1 AATCGCAACGCGAAATGAAAATC
708746 ACAATGCGAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.47, C:0.21, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:708754 original size:19 final size:19
Alignment explanation
Indices: 708620--708745 Score: 119
Period size: 19 Copynumber: 7.1 Consensus size: 19
708610 TAGTTTACTT
* *
708620 TCGCAACACGAAAATTAAAA
1 TCGCAACGCG-AAATGAAAA
**
708640 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
708659 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
708678 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
708692 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
708711 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
708725 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
708744 TC
1 TC
708746 ACAATGCGAT
Statistics
Matches: 89, Mismatches: 7, Indels: 21
0.76 0.06 0.18
Matches are distributed among these distances:
14 16 0.18
16 11 0.12
17 11 0.12
19 42 0.47
20 9 0.10
ACGTcount: A:0.48, C:0.23, G:0.18, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:708772 original size:19 final size:19
Alignment explanation
Indices: 708750--708877 Score: 116
Period size: 19 Copynumber: 7.3 Consensus size: 19
708740 AAAATCACAA
708750 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
708769 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
708783 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
708802 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
708816 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
708835 TGCGA-TTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
708853 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
708873 TGCGA
1 TGCGA
708878 AAGTAAACTA
Statistics
Matches: 88, Mismatches: 9, Indels: 23
0.73 0.08 0.19
Matches are distributed among these distances:
14 22 0.25
15 1 0.01
16 2 0.02
17 2 0.02
18 18 0.20
19 30 0.34
20 13 0.15
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.45
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:708792 original size:33 final size:33
Alignment explanation
Indices: 708750--708841 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
708740 AAAATCACAA
708750 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
708783 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
708816 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
708842 TGGTTTCGCG
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:709209 original size:91 final size:92
Alignment explanation
Indices: 708925--709385 Score: 844
Period size: 91 Copynumber: 5.1 Consensus size: 92
708915 ATGGATTGCA
*
708925 TTAC-TTC-ACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAAAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTA-TTCACAGTGTTAAAGAATACACAGTT
708988 TAGCAGAATTGGCAGCAACCGAACAAAT
65 TAGCAGAATTGGCAGCAACCGAACAAAT
709016 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTA-TTCACAGTGTTAAAGAATACACAGTT
709081 TAGCAGAATTGGCAGCAACCGAACAAAT
65 TAGCAGAATTGGCAGCAACCGAACAAAT
709109 TTACTTTCAACCAAAAGACAAAACAAAGAC-AATACTATTCACAGTGTTAAAGAATACACAGTTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTCACAGTGTTAAAGAATACACAGTTT
709173 AGCAGAATTGGCAGCAACCGAACAAAT
66 AGCAGAATTGGCAGCAACCGAACAAAT
709200 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTCACAGTGTTAAAGAATACACAGTTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTCACAGTGTTAAAGAATACACAGTTT
709265 AGCAGAATTGGCAGCAACCGAACAAA-
66 AGCAGAATTGGCAGCAACCGAACAAAT
709291 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTCACAGTGTTAAAGAATACACAG-TT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTCACAGTGTTAAAGAATACACAGTTT
*
709355 AGCAGAATTGGCAGCAACCG-ATAAAT
66 AGCAGAATTGGCAGCAACCGAACAAAT
709381 TTACT
1 TTACT
709386 AAGCAATCTA
Statistics
Matches: 364, Mismatches: 2, Indels: 9
0.97 0.01 0.02
Matches are distributed among these distances:
89 4 0.01
90 27 0.07
91 150 0.41
92 70 0.19
93 113 0.31
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.21
Consensus pattern (92 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTCACAGTGTTAAAGAATACACAGTTT
AGCAGAATTGGCAGCAACCGAACAAAT
Found at i:709350 original size:183 final size:184
Alignment explanation
Indices: 708924--709385 Score: 846
Period size: 184 Copynumber: 2.5 Consensus size: 184
708914 AATGGATTGC
*
708924 ATTAC-TTC-ACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAAAGT
1 ATTACTTTCAACCAAAAGACAAAACAAAGACAAATACTA-TTCACAGTGTTAAAGAATACACAGT
708987 TTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATAC
65 TTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATAC
709052 TATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAA
130 TATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAA
709107 ATTTACTTTCAACCAAAAGACAAAACAAAGAC-AATACTATTCACAGTGTTAAAGAATACACAGT
1 A-TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTCACAGTGTTAAAGAATACACAGT
709171 TTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATAC
65 TTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATAC
709236 TA-TTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAA
130 TATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAA
709290 ATTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTCACAGTGTTAAAGAATACACAG-T
1 ATTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTCACAGTGTTAAAGAATACACAGTT
*
709354 TAGCAGAATTGGCAGCAACCG-ATAAATTTACT
66 TAGCAGAATTGGCAGCAACCGAACAAATTTACT
709386 AAGCAATCTA
Statistics
Matches: 273, Mismatches: 2, Indels: 10
0.96 0.01 0.04
Matches are distributed among these distances:
181 10 0.04
182 52 0.19
183 85 0.31
184 95 0.35
185 10 0.04
186 21 0.08
ACGTcount: A:0.47, C:0.19, G:0.13, T:0.21
Consensus pattern (184 bp):
ATTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACT
ATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAA
Found at i:711106 original size:14 final size:14
Alignment explanation
Indices: 711087--711176 Score: 63
Period size: 14 Copynumber: 5.7 Consensus size: 14
711077 TTGAAATGAA
711087 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
711101 AATCGCAACGCGAAATGAC
1 AATCGCAA--CG--A-GAG
*
711120 AATCGCAACGATAG
1 AATCGCAACGAGAG
*
711134 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
711153 AATCGCAACGAGAG
1 AATCGCAACGAGAG
711167 AATCGCAACG
1 AATCGCAACG
711177 CGAAATAAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
14 29 0.48
15 2 0.03
16 4 0.07
17 4 0.07
18 2 0.03
19 19 0.32
ACGTcount: A:0.43, C:0.23, G:0.23, T:0.10
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:711124 original size:33 final size:33
Alignment explanation
Indices: 711079--711193 Score: 203
Period size: 33 Copynumber: 3.5 Consensus size: 33
711069 TCTTTTGGTT
711079 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
711112 GAAATGACAATCGCAACGATAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
711145 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
711178 GAAATAAAAATCGCAA
1 GAAATGAAAATCGCAA
711194 TGCGATTTTG
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 77 1.00
ACGTcount: A:0.47, C:0.21, G:0.22, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:711125 original size:19 final size:19
Alignment explanation
Indices: 711101--711198 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
711091 GCAACGAGAG
*
711101 AATCGCAACGCGAAATGAC
1 AATCGCAACGCGAAATGAA
*
711120 AATCGCAA--CG--AT-AG
1 AATCGCAACGCGAAATGAA
711134 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
711153 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
*
711167 AATCGCAACGCGAAATAAA
1 AATCGCAACGCGAAATGAA
*
711186 AATCGCAATGCGA
1 AATCGCAACGCGA
711199 TTTTGGTTTC
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 19 0.30
15 3 0.05
16 4 0.06
17 4 0.06
18 3 0.05
19 30 0.48
ACGTcount: A:0.45, C:0.22, G:0.21, T:0.11
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:711229 original size:14 final size:14
Alignment explanation
Indices: 711210--711266 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
711200 TTTGGTTTCG
711210 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
711224 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
711243 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
711257 CGTTGCGATT
1 CGTTGCGATT
711267 TTCATTTCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:711248 original size:19 final size:19
Alignment explanation
Indices: 711224--711312 Score: 89
Period size: 19 Copynumber: 4.9 Consensus size: 19
711214 GCGATTCTCT
711224 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
711243 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
711257 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*** *
711276 CGTTGCGACAGTCATTCTCT
1 CGTTGCGATTTTCATT-TCG
711296 CGTTGCGATTTTCATTT
1 CGTTGCGATTTTCATTT
711313 ATCTCGTTGC
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
14 10 0.18
16 3 0.05
17 3 0.05
19 24 0.44
20 15 0.27
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.45
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:711304 original size:39 final size:33
Alignment explanation
Indices: 711194--711312 Score: 166
Period size: 33 Copynumber: 3.4 Consensus size: 33
711184 AAAATCGCAA
**
711194 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
711227 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
711260 TGCGATTTTCATTTCGCGTTGCGACAGTCATTCTCTCGT
1 TGCGATTTTCATTTCGCGTT--G-C-G--ATTCTCTCGT
711299 TGCGATTTTCATTT
1 TGCGATTTTCATTT
711313 ATCTCGTTGC
Statistics
Matches: 78, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
33 51 0.65
35 1 0.01
36 1 0.01
37 1 0.01
39 24 0.31
ACGTcount: A:0.10, C:0.23, G:0.22, T:0.45
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:711446 original size:33 final size:33
Alignment explanation
Indices: 711404--711474 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
711394 AATACTAACT
711404 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
* *
711437 TGAAAATCGCAACGAGAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
711470 TGAAA
1 TGAAA
711475 TCTAAGTGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.48, C:0.17, G:0.24, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
Found at i:711708 original size:22 final size:22
Alignment explanation
Indices: 711656--711710 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
711646 TGGTTGTGAG
**
711656 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
711678 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
711700 GGATTTCTTCG
1 GGATTTCTTCG
711711 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:711882 original size:20 final size:20
Alignment explanation
Indices: 711857--712050 Score: 203
Period size: 20 Copynumber: 9.7 Consensus size: 20
711847 CTTTAAATAT
711857 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
711877 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
* *
711899 -TCGTTGCGATTTACCGATA
1 CGCGTTGCGATTTACGGATA
*
711918 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
711938 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
711958 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
711978 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* * *
711998 CGCATTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
712018 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
712038 CGCGTTGCGATTT
1 CGCGTTGCGATTT
712051 TGGAAAATCG
Statistics
Matches: 143, Mismatches: 26, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
19 2 0.01
20 124 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:712022 original size:60 final size:60
Alignment explanation
Indices: 711859--712030 Score: 236
Period size: 60 Copynumber: 2.9 Consensus size: 60
711849 TTAAATATCG
* ** *
711859 CGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACCGATACG
1 CGTTGCGATTTACGGATACGCATTGCGA-TTTATGTATTCGCGTTGCGATTTACCGATACA
* *** * *
711920 CGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATACA
1 CGTTGCGATTTACGGATACGCATTGCGATTTATGTATTCGCGTTGCGATTTACCGATACA
*
711980 CGTTGCGATTTACGGATACGCATTGCGATTTATGTGTTCGCGTTGCGATTT
1 CGTTGCGATTTACGGATACGCATTGCGATTTATGTATTCGCGTTGCGATTT
712031 TCATATTCGC
Statistics
Matches: 95, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
60 69 0.73
61 26 0.27
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (60 bp):
CGTTGCGATTTACGGATACGCATTGCGATTTATGTATTCGCGTTGCGATTTACCGATACA
Found at i:712044 original size:60 final size:60
Alignment explanation
Indices: 711856--712171 Score: 232
Period size: 60 Copynumber: 5.2 Consensus size: 60
711846 GCTTTAAATA
* ** * *
711856 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACCGAT
1 TCGCGTTGCGATTTACGGATACGCATTGCGA-TTTATGTATTCGCGTTGCGATTTTCAGAT
* * *** * * *
711917 ACGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTACGGATACGCATTGCGATTTATGTATTCGCGTTGCGATTTTCAGAT
* * * *
711977 ACACGTTGCGATTTACGGATACGCATTGCGATTTATGTGTTCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTACGGATACGCATTGCGATTTATGTATTCGCGTTGCGATTTTCAGAT
* * * * * *
712037 TCGCGTTGCGATTT-TGGAAAATCGCAATGCGAATT-TG-ACTATCGCATTGCGATTTTCAAGAA
1 TCGCGTTGCGATTTACGG-ATA-CGCATTGCGATTTATGTA-T-TCGCGTTGCGATTTTC-AGAT
* * ** * * *
712099 TCGCGTTGCGATTT-TGGACACTG-ATTTGCGATTCTGGGGA-TCGCGTTGCGATTTTTA-TT
1 TCGCGTTGCGATTTACGGATAC-GCA-TTGCGATT-TATGTATTCGCGTTGCGATTTTCAGAT
712158 TCGCGTTGCGATTT
1 TCGCGTTGCGATTT
712172 TTGTTGGTCA
Statistics
Matches: 207, Mismatches: 38, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
59 16 0.08
60 92 0.44
61 77 0.37
62 20 0.10
63 1 0.00
64 1 0.00
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.36
Consensus pattern (60 bp):
TCGCGTTGCGATTTACGGATACGCATTGCGATTTATGTATTCGCGTTGCGATTTTCAGAT
Found at i:712067 original size:21 final size:20
Alignment explanation
Indices: 712017--712114 Score: 79
Period size: 20 Copynumber: 4.8 Consensus size: 20
712007 ATTTATGTGT
* * * *
712017 TCGCGTTGCGATTTTCATAT
1 TCGCATTGCGATTTTGAAAA
*
712037 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTT-GAAAA
* * **
712058 TCGCAATGCGAATTTGACTA
1 TCGCATTGCGATTTTGAAAA
*
712078 TCGCATTGCGATTTTCAAGAA
1 TCGCATTGCGATTTTGAA-AA
*
712099 TCGCGTTGCGATTTTG
1 TCGCATTGCGATTTTG
712115 GACACTGATT
Statistics
Matches: 61, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
20 32 0.52
21 29 0.48
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (20 bp):
TCGCATTGCGATTTTGAAAA
Found at i:712109 original size:41 final size:41
Alignment explanation
Indices: 712017--712114 Score: 110
Period size: 41 Copynumber: 2.4 Consensus size: 41
712007 ATTTATGTGT
* * *
712017 TCGCGTTGCGATTTTCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGATTTTGATATTCGCATTGCGATTTTGCAAAA
** *
712058 TCGCAATGCGAATTTGACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGATTTTGA-TATTCGCATTGCGATTTTGCAA-AA
712099 TCGCGTTGCGATTTTG
1 TCGCGTTGCGATTTTG
712115 GACACTGATT
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
40 2 0.04
41 42 0.91
42 2 0.04
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (41 bp):
TCGCGTTGCGATTTTGATATTCGCATTGCGATTTTGCAAAA
Found at i:718948 original size:15 final size:15
Alignment explanation
Indices: 718928--718957 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
718918 TATCACAATC
718928 GCGCAGGATTCCGGG
1 GCGCAGGATTCCGGG
718943 GCGCAGGATTCCGGG
1 GCGCAGGATTCCGGG
718958 AGCCACCGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.47, T:0.13
Consensus pattern (15 bp):
GCGCAGGATTCCGGG
Found at i:728069 original size:21 final size:22
Alignment explanation
Indices: 728043--728093 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
728033 ATTTTCCAGA
728043 ATGCTACAGGT-TAACGATACC
1 ATGCTACAGGTGTAACGATACC
* *
728064 ATGCTATA-GTGTACCGATACC
1 ATGCTACAGGTGTAACGATACC
*
728085 CTGCTACAG
1 ATGCTACAG
728094 TAATTTTCGG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (22 bp):
ATGCTACAGGTGTAACGATACC
Found at i:729883 original size:3 final size:3
Alignment explanation
Indices: 729877--729902 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
729867 AAGAAAACAT
729877 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
729903 GAGTTTTCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:731872 original size:252 final size:252
Alignment explanation
Indices: 731427--731976 Score: 1012
Period size: 252 Copynumber: 2.2 Consensus size: 252
731417 CGAATTGTAT
*
731427 CATTAGTCTAAAGAAGCATGTATTATGGACTCTGGTGCATGTATCATTTGGAAGATTTATTACTT
1 CATTAGTCCAAAGAAGCATGTATTATGGACTCTGGTGCATGTATCATTTGGAAGATTTATTACTT
* *
731492 CTTCCTTTGATGTGAGTCTTGTGATGCATGTTTCATCCTCCCTTTCTTCAAAAAGAATCGACCTT
66 CTTCCTTTGACGTGAGTCTTGTGATGCATGTATCATCCTCCCTTTCTTCAAAAAGAATCGACCTT
731557 GAATCTAAAACATTAAAGGGAGCAACATTAGAATCGTTTAATAATTCATTCACATTATAGTTACC
131 GAATCTAAAACATTAAAGGGAGCAACATTAGAATCGTTTAATAATTCATTCACATTATAGTTACC
731622 GAATAGATATGCTTTGAATCTTCGAGACTTTGTTCTTCTAATAGGTTCGAGTAGAAA
196 GAATAGATATGCTTTGAATCTTCGAGACTTTGTTCTTCTAATAGGTTCGAGTAGAAA
*
731679 CATTAGTCCAAAGAAGCATGTATTATGGACTCTGGTGCATGTATCATTTGGAATATTTATTACTT
1 CATTAGTCCAAAGAAGCATGTATTATGGACTCTGGTGCATGTATCATTTGGAAGATTTATTACTT
*
731744 CTTCCTTTGACGTGAGTCTTGTGATGCATGTATCATCCTCCCTTTCTT-AAAATAGATTCGACCT
66 CTTCCTTTGACGTGAGTCTTGTGATGCATGTATCATCCTCCCTTTCTTCAAAA-AGAATCGACCT
*
731808 TGAATCTAAAACATTAAAGGGAGCAACATTAGAATCGTTTAATGATTCATTCACATTATAGTTAC
130 TGAATCTAAAACATTAAAGGGAGCAACATTAGAATCGTTTAATAATTCATTCACATTATAGTTAC
* *
731873 CGAATATATATGCTTTGAATCTTCGAGACTTTGTTCTTCTAATGGGTTCGAGTAGAAA
195 CGAATAGATATGCTTTGAATCTTCGAGACTTTGTTCTTCTAATAGGTTCGAGTAGAAA
731931 CATTAGTCCAAAGAAGCATGTATTATGGACTCTGGTGCATGTATCA
1 CATTAGTCCAAAGAAGCATGTATTATGGACTCTGGTGCATGTATCA
731977 GCTTTACTCA
Statistics
Matches: 289, Mismatches: 8, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
251 4 0.01
252 285 0.99
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (252 bp):
CATTAGTCCAAAGAAGCATGTATTATGGACTCTGGTGCATGTATCATTTGGAAGATTTATTACTT
CTTCCTTTGACGTGAGTCTTGTGATGCATGTATCATCCTCCCTTTCTTCAAAAAGAATCGACCTT
GAATCTAAAACATTAAAGGGAGCAACATTAGAATCGTTTAATAATTCATTCACATTATAGTTACC
GAATAGATATGCTTTGAATCTTCGAGACTTTGTTCTTCTAATAGGTTCGAGTAGAAA
Found at i:734298 original size:22 final size:22
Alignment explanation
Indices: 734259--734303 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
734249 ATGATAATAT
*
734259 ACAGTACCAGGAATAGTAATGA
1 ACAGTACCAGGAACAGTAATGA
*
734281 ACAGTACC-GTGAACAGTACTGA
1 ACAGTACCAG-GAACAGTAATGA
734303 A
1 A
734304 TGTTAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.18
Consensus pattern (22 bp):
ACAGTACCAGGAACAGTAATGA
Found at i:740651 original size:19 final size:19
Alignment explanation
Indices: 740627--740687 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 19
740617 TTTTGGTGCA
*
740627 GAGGGAATCGATCCCCCCT
1 GAGGGAACCGATCCCCCCT
*
740646 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGA-TCCCCC-CT
740667 GAATGGGAACCGATTCCCCCC
1 G-A-GGGAACCGA-TCCCCCC
740688 ACAGGGGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
19 10 0.29
20 6 0.17
21 2 0.06
22 1 0.03
23 16 0.46
ACGTcount: A:0.21, C:0.36, G:0.25, T:0.18
Consensus pattern (19 bp):
GAGGGAACCGATCCCCCCT
Found at i:744353 original size:3 final size:3
Alignment explanation
Indices: 744345--744407 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
744335 ATTCAATGTA
744345 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
744393 AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT
744408 GTAATTACCT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:746054 original size:12 final size:13
Alignment explanation
Indices: 746023--746055 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
746013 ATCGACCATT
746023 AGGGAAATTTAGG
1 AGGGAAATTTAGG
746036 AGGGAAATTTAGG
1 AGGGAAATTTAGG
746049 -GGGAAAT
1 AGGGAAAT
746056 GTTGAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.35
13 13 0.65
ACGTcount: A:0.39, C:0.00, G:0.39, T:0.21
Consensus pattern (13 bp):
AGGGAAATTTAGG
Found at i:753812 original size:24 final size:25
Alignment explanation
Indices: 753785--753838 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
753775 GGTACTTATT
*
753785 TTTTTA-TGTAATTAAATG-TCTAAC
1 TTTTTAGTGTAATT-AAGGATCTAAC
753809 TTTTTAGTGTAATTAAGGATCTAAC
1 TTTTTAGTGTAATTAAGGATCTAAC
753834 TTTTT
1 TTTTT
753839 TATTTATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 9 0.33
25 18 0.67
ACGTcount: A:0.30, C:0.07, G:0.11, T:0.52
Consensus pattern (25 bp):
TTTTTAGTGTAATTAAGGATCTAAC
Found at i:755795 original size:32 final size:29
Alignment explanation
Indices: 755752--755827 Score: 80
Period size: 32 Copynumber: 2.4 Consensus size: 29
755742 TTAATTTTAC
* *
755752 ATATCATTTTTAAATATTCATAAAATCGTAATT
1 ATAT-ATTTTTAAAT-TTCAGAAAAT--AAATT
*
755785 ATATTTTTTTATAATTTCAGAAAATAAATT
1 ATATATTTTTA-AATTTCAGAAAATAAATT
755815 ATATATTTTTAAA
1 ATATATTTTTAAA
755828 ATTTTACGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
29 2 0.05
30 14 0.37
32 15 0.39
33 7 0.18
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (29 bp):
ATATATTTTTAAATTTCAGAAAATAAATT
Found at i:756034 original size:17 final size:15
Alignment explanation
Indices: 756012--756045 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
756002 TTTAATGATC
756012 ATTTTATAATATCTAAA
1 ATTTTATAA-ATC-AAA
756029 ATTTTATAAATCAAA
1 ATTTTATAAATCAAA
756044 AT
1 AT
756046 AATAAGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 3 0.18
17 9 0.53
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (15 bp):
ATTTTATAAATCAAA
Found at i:756213 original size:16 final size:16
Alignment explanation
Indices: 756192--756255 Score: 83
Period size: 16 Copynumber: 4.0 Consensus size: 16
756182 ATTACCCGAT
*
756192 CTGTTTTCAATCTGAC
1 CTGTTTTCAACCTGAC
*
756208 CTGTTTTCAACCTGGC
1 CTGTTTTCAACCTGAC
*
756224 CTGTTTTTAACCTGAC
1 CTGTTTTCAACCTGAC
* *
756240 ATGTTTTTAACCTGAC
1 CTGTTTTCAACCTGAC
756256 ATGTAAATGA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.19, C:0.25, G:0.14, T:0.42
Consensus pattern (16 bp):
CTGTTTTCAACCTGAC
Found at i:756547 original size:22 final size:24
Alignment explanation
Indices: 756514--756562 Score: 84
Period size: 23 Copynumber: 2.1 Consensus size: 24
756504 AATGCAAAGA
756514 AAATTAATATAGTTTAA-TTATAT
1 AAATTAATATAGTTTAATTTATAT
756537 AAATT-ATATAGTTTAATTTATAT
1 AAATTAATATAGTTTAATTTATAT
756560 AAA
1 AAA
756563 GAAAAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 11 0.44
23 14 0.56
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (24 bp):
AAATTAATATAGTTTAATTTATAT
Found at i:756821 original size:18 final size:18
Alignment explanation
Indices: 756786--756823 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
756776 AATAATACAA
*
756786 ATATAAACTATACCATTT
1 ATATAAACTATACAATTT
*
756804 ATATAAACTATATAATTT
1 ATATAAACTATACAATTT
756822 AT
1 AT
756824 TACTTTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (18 bp):
ATATAAACTATACAATTT
Found at i:757047 original size:19 final size:20
Alignment explanation
Indices: 757033--757071 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
757023 AAATTTTTCT
757033 ATTT-CCTCTAAATTTCCCA
1 ATTTCCCTCTAAATTTCCCA
757052 ATTTCCCTCTAAA-TTCCCA
1 ATTTCCCTCTAAATTTCCCA
757071 A
1 A
757072 ATAAAATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.28, C:0.33, G:0.00, T:0.38
Consensus pattern (20 bp):
ATTTCCCTCTAAATTTCCCA
Found at i:757149 original size:2 final size:2
Alignment explanation
Indices: 757142--757188 Score: 69
Period size: 2 Copynumber: 23.5 Consensus size: 2
757132 ACTTTGAATA
*
757142 AT AT AT AT AT A- AGT AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
757184 AT AT A
1 AT AT A
757189 ATTAAACATA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
1 1 0.02
2 39 0.95
3 1 0.02
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (2 bp):
AT
Found at i:761102 original size:23 final size:21
Alignment explanation
Indices: 761072--761132 Score: 68
Period size: 23 Copynumber: 2.8 Consensus size: 21
761062 GCATGTCATT
761072 GTGCATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTC-AGG
* * *
761094 CGTGCATCGGTGCACCTTCATG
1 -GTGCATCGATGCACATTCAGG
*
761116 GTGTATCGATGCACATT
1 GTGCATCGATGCACATT
761133 TAAAGGGATG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 14 0.44
22 2 0.06
23 16 0.50
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.28
Consensus pattern (21 bp):
GTGCATCGATGCACATTCAGG
Found at i:761128 original size:21 final size:21
Alignment explanation
Indices: 761053--761132 Score: 74
Period size: 21 Copynumber: 3.8 Consensus size: 21
761043 ACCCGACGGA
*
761053 TGCATCGATG--CATGTCATTG
1 TGCATCGATGCACAT-TCATGG
*
761073 TGCATCGATGCACATTCAAGGCG
1 TGCATCGATGCACATTC-ATG-G
* *
761096 TGCATCGGTGCACCTTCATGG
1 TGCATCGATGCACATTCATGG
*
761117 TGTATCGATGCACATT
1 TGCATCGATGCACATT
761133 TAAAGGGATG
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
20 10 0.21
21 16 0.33
22 6 0.12
23 16 0.33
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30
Consensus pattern (21 bp):
TGCATCGATGCACATTCATGG
Found at i:765279 original size:23 final size:23
Alignment explanation
Indices: 765253--765297 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
765243 CACCACAGCT
*
765253 CGTATAAATGCACCGAAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCG
* * *
765276 CGTAGAATTGTACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
765298 ATATAATAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCG
Found at i:776442 original size:2 final size:2
Alignment explanation
Indices: 776435--776463 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
776425 TATGTTTAAT
776435 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
776464 TCAAAGTGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:776875 original size:14 final size:14
Alignment explanation
Indices: 776823--776936 Score: 74
Period size: 14 Copynumber: 8.2 Consensus size: 14
776813 ATAGTTTATA
*
776823 TAAACCTTAAACCC
1 TAAACTTTAAACCC
* *
776837 TAAA-TCCTAAATCC
1 TAAACT-TTAAACCC
*
776851 TAAA-TCATAAACCC
1 TAAACT-TTAAACCC
*
776865 TAAACTTTAAA-CA
1 TAAACTTTAAACCC
776878 TAAA-TGTTAAACCC
1 TAAACT-TTAAACCC
* *
776892 TAAACTCTAAACAC
1 TAAACTTTAAACCC
* * *
776906 TAAACCTTAAATCA
1 TAAACTTTAAACCC
*
776920 TAAACTATAAACCC
1 TAAACTTTAAACCC
776934 TAA
1 TAA
776937 TGTATGTATA
Statistics
Matches: 76, Mismatches: 19, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
12 1 0.01
13 10 0.13
14 63 0.83
15 2 0.03
ACGTcount: A:0.48, C:0.25, G:0.01, T:0.25
Consensus pattern (14 bp):
TAAACTTTAAACCC
Found at i:776930 original size:21 final size:21
Alignment explanation
Indices: 776821--776932 Score: 65
Period size: 21 Copynumber: 5.4 Consensus size: 21
776811 ATATAGTTTA
* *
776821 TATAAACCTTAAACCCTAAATCC
1 TATAAACCTTAAATCATAAA--C
*
776844 TA-AATCC-TAAATCATAAAC
1 TATAAACCTTAAATCATAAAC
** *
776863 CCTAAACTTTAAA-CATAAA-
1 TATAAACCTTAAATCATAAAC
* *
776882 TGTTAAACCCTAAACTC-TAAAC
1 T-ATAAACCTTAAA-TCATAAAC
776904 -ACTAAACCTTAAATCATAAAC
1 TA-TAAACCTTAAATCATAAAC
776925 TATAAACC
1 TATAAACC
776933 CTAATGTATG
Statistics
Matches: 67, Mismatches: 13, Indels: 20
0.67 0.13 0.20
Matches are distributed among these distances:
19 1 0.01
20 20 0.30
21 38 0.57
22 6 0.09
23 2 0.03
ACGTcount: A:0.48, C:0.25, G:0.01, T:0.26
Consensus pattern (21 bp):
TATAAACCTTAAATCATAAAC
Done.