Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008296.1 Hibiscus syriacus cultivar Beakdansim tig00110963_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1205179
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 7 of 7
Found at i:1162884 original size:20 final size:20
Alignment explanation
Indices: 1162859--1162896 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1162849 CCCCCTTTGA
*
1162859 AGGGGAACCGATTCCCCCAC
1 AGGGGAACCGATACCCCCAC
*
1162879 AGGGGAATCGATACCCCC
1 AGGGGAACCGATACCCCC
1162897 TGGGGTTCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.37, G:0.26, T:0.11
Consensus pattern (20 bp):
AGGGGAACCGATACCCCCAC
Found at i:1166595 original size:27 final size:27
Alignment explanation
Indices: 1166515--1166596 Score: 71
Period size: 27 Copynumber: 3.0 Consensus size: 27
1166505 AATAAAATTT
* *
1166515 ATATTATTT-ATTAATTTCATAGAAATA
1 ATATTATTTAAAT-ATTTCATATAAATA
* *
1166542 ATATTA-TTAAAT-TATTAATAATGAATA
1 ATATTATTTAAATAT-TTCAT-ATAAATA
*
1166569 ATATTATTTAAATATTTCATATTAATA
1 ATATTATTTAAATATTTCATATAAATA
1166596 A
1 A
1166597 AATAATCTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
25 1 0.02
26 6 0.14
27 26 0.59
28 10 0.23
29 1 0.02
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (27 bp):
ATATTATTTAAATATTTCATATAAATA
Found at i:1166596 original size:54 final size:54
Alignment explanation
Indices: 1166459--1166596 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 54
1166449 ATATTTCTAA
* * * * *
1166459 TAATATAATATAATATTTTTATTTTAATAATATATAATAAATTATTAATAAAAT
1 TAATATTATTTAATAATTTCATATTAATAATATATAATAAATTATTAATAAAAT
* * ** *
1166513 TTATATTATTTATTAATTTCATAGAAATAATAT-TATTAAATTATTAATAATGAA-
1 TAATATTATTTAATAATTTCATATTAATAATATATAATAAATTATTAATAA--AAT
1166567 TAATATTATTTAA-ATATTTCATATTAATAA
1 TAATATTATTTAATA-ATTTCATATTAATAA
1166597 AATAATCTAA
Statistics
Matches: 67, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
53 17 0.25
54 48 0.72
55 2 0.03
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (54 bp):
TAATATTATTTAATAATTTCATATTAATAATATATAATAAATTATTAATAAAAT
Found at i:1166642 original size:23 final size:22
Alignment explanation
Indices: 1166616--1166659 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
1166606 ATAAATATTT
1166616 TAATAAAGATATTTAAAATATAC
1 TAATAAAGAT-TTTAAAATATAC
* * *
1166639 TAATTAATATTTTTAAATATA
1 TAATAAAGATTTTAAAATATA
1166660 ATATAACATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (22 bp):
TAATAAAGATTTTAAAATATAC
Found at i:1171871 original size:22 final size:22
Alignment explanation
Indices: 1171843--1171890 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
1171833 AAAATTTAGT
*
1171843 GAAACCGAAAGCAACCCAAATC
1 GAAACCGAAAGCAACCCAAACC
**
1171865 GAAACCGAAATTAACCCAAACC
1 GAAACCGAAAGCAACCCAAACC
1171887 GAAA
1 GAAA
1171891 GAAACTCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.52, C:0.29, G:0.12, T:0.06
Consensus pattern (22 bp):
GAAACCGAAAGCAACCCAAACC
Found at i:1171885 original size:16 final size:16
Alignment explanation
Indices: 1171866--1171922 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
1171856 ACCCAAATCG
1171866 AAACCGAAATTAACCC
1 AAACCGAAATTAACCC
** *
1171882 AAACCGAAAGAAACTC
1 AAACCGAAATTAACCC
*
1171898 AAACCGAATTTTAACCC
1 AAACCGAA-ATTAACCC
*
1171915 AATCCGAA
1 AAACCGAA
1171923 CTAAATTTAA
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
16 21 0.66
17 11 0.34
ACGTcount: A:0.49, C:0.28, G:0.09, T:0.14
Consensus pattern (16 bp):
AAACCGAAATTAACCC
Found at i:1172022 original size:18 final size:19
Alignment explanation
Indices: 1171989--1172033 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
1171979 TAAATTAATT
1171989 TAAATATTTATAATTTATTAA
1 TAAATA-TTATAATTTA-TAA
1172010 -AAATATTAT-ATTTATAA
1 TAAATATTATAATTTATAA
1172027 TAAATAT
1 TAAATAT
1172034 AATAGAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 3 0.13
18 11 0.48
19 4 0.17
20 5 0.22
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TAAATATTATAATTTATAA
Found at i:1172190 original size:138 final size:138
Alignment explanation
Indices: 1172007--1172311 Score: 566
Period size: 138 Copynumber: 2.2 Consensus size: 138
1171997 TATAATTTAT
1172007 TAAAAATATTATATTTATAAT----A-AATATAATAGAAAGTTTACTTATGTTATCACATAAGAG
1 TAAAAATATTATATTTATAATAGAAATAATATAATAGAAAGTTTACTTATGTTATCACATAAGAG
1172067 GAATATAAAAGTAAGAATCTAATTTGTAAGATTGAAAACAATAATAAATAAAGTTTACTTTTCTT
66 GAATATAAAAGTAAGAATCTAATTTGTAAGATTGAAAACAATAATAAATAAAGTTTACTTTTCTT
1172132 TCTTGTAA
131 TCTTGTAA
*
1172140 TAAAAATATTATATTTATAATAGAAATAATATAATATAAAGTTTACTTATGTTATCACATAAGAG
1 TAAAAATATTATATTTATAATAGAAATAATATAATAGAAAGTTTACTTATGTTATCACATAAGAG
1172205 GAATATAAAAGTAAGAATCTAATTTGTAAGATTGAAAACAATAATAAATAAAGTTTACTTTTCTT
66 GAATATAAAAGTAAGAATCTAATTTGTAAGATTGAAAACAATAATAAATAAAGTTTACTTTTCTT
1172270 TCTTGTAA
131 TCTTGTAA
1172278 TAAAAATATTATATTTATAATAGAAATAATATAA
1 TAAAAATATTATATTTATAATAGAAATAATATAA
1172312 AACAACTAAA
Statistics
Matches: 166, Mismatches: 1, Indels: 5
0.97 0.01 0.03
Matches are distributed among these distances:
133 21 0.13
137 1 0.01
138 144 0.87
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.38
Consensus pattern (138 bp):
TAAAAATATTATATTTATAATAGAAATAATATAATAGAAAGTTTACTTATGTTATCACATAAGAG
GAATATAAAAGTAAGAATCTAATTTGTAAGATTGAAAACAATAATAAATAAAGTTTACTTTTCTT
TCTTGTAA
Found at i:1172838 original size:41 final size:41
Alignment explanation
Indices: 1172793--1172898 Score: 185
Period size: 41 Copynumber: 2.6 Consensus size: 41
1172783 AAATAAACTC
* * *
1172793 ATCCGATATTGACCCGACCTGAAATCGAACTGAAAAAATTG
1 ATCCGATAATCACCCGACCCGAAATCGAACTGAAAAAATTG
1172834 ATCCGATAATCACCCGACCCGAAATCGAACTGAAAAAATTG
1 ATCCGATAATCACCCGACCCGAAATCGAACTGAAAAAATTG
1172875 ATCCGATAATCACCCGACCCGAAA
1 ATCCGATAATCACCCGACCCGAAA
1172899 AATTGATTGA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.40, C:0.27, G:0.15, T:0.18
Consensus pattern (41 bp):
ATCCGATAATCACCCGACCCGAAATCGAACTGAAAAAATTG
Found at i:1173869 original size:6 final size:6
Alignment explanation
Indices: 1173858--1173888 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
1173848 TCATTGTCTC
1173858 CTTCCA CTTCCA CTTCCA CTTCCA CTTCCA C
1 CTTCCA CTTCCA CTTCCA CTTCCA CTTCCA C
1173889 AACCACAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.52, G:0.00, T:0.32
Consensus pattern (6 bp):
CTTCCA
Found at i:1173894 original size:18 final size:18
Alignment explanation
Indices: 1173858--1173894 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
1173848 TCATTGTCTC
**
1173858 CTTCCACTTCCACTTCCA
1 CTTCCACTTCCACAACCA
1173876 CTTCCACTTCCACAACCA
1 CTTCCACTTCCACAACCA
1173894 C
1 C
1173895 AACTAATGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.51, G:0.00, T:0.27
Consensus pattern (18 bp):
CTTCCACTTCCACAACCA
Found at i:1180678 original size:6 final size:6
Alignment explanation
Indices: 1180661--1180736 Score: 73
Period size: 6 Copynumber: 12.7 Consensus size: 6
1180651 GGGTTTTTTA
* * ** *
1180661 GGTTCG GGTTTG GATTTG GGTTCA GATTTG GGTTT- GGTTTG GGTTTG
1 GGTTTG GGTTTG GGTTTG GGTTTG GGTTTG GGTTTG GGTTTG GGTTTG
* *
1180708 GGTTTG AGTTTG GGTTTA GGTTTAG GGTT
1 GGTTTG GGTTTG GGTTTG GGTTT-G GGTT
1180737 CAAGTTTAGG
Statistics
Matches: 55, Mismatches: 13, Indels: 3
0.77 0.18 0.04
Matches are distributed among these distances:
5 5 0.09
6 46 0.84
7 4 0.07
ACGTcount: A:0.08, C:0.03, G:0.42, T:0.47
Consensus pattern (6 bp):
GGTTTG
Found at i:1180755 original size:19 final size:18
Alignment explanation
Indices: 1180721--1180767 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
1180711 TTGAGTTTGG
* *
1180721 GTTTAGGTTTAGGGTTCAA
1 GTTTAGGGTTAAGGTT-AA
1180740 GTTTAGGGTTAAGGTTAA
1 GTTTAGGGTTAAGGTTAA
*
1180758 GGTT-GGGTTA
1 GTTTAGGGTTA
1180768 TAGAAGATGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 6 0.24
18 5 0.20
19 14 0.56
ACGTcount: A:0.21, C:0.02, G:0.36, T:0.40
Consensus pattern (18 bp):
GTTTAGGGTTAAGGTTAA
Found at i:1181821 original size:18 final size:18
Alignment explanation
Indices: 1181798--1181886 Score: 151
Period size: 18 Copynumber: 4.9 Consensus size: 18
1181788 TTATAACACA
1181798 TATGTCCCGAAGGACCAC
1 TATGTCCCGAAGGACCAC
1181816 TATGTCCCGAAGGACCAC
1 TATGTCCCGAAGGACCAC
*
1181834 TATGTCCCGAATGACCAC
1 TATGTCCCGAAGGACCAC
1181852 ATATGTCCCGAAGGACCAC
1 -TATGTCCCGAAGGACCAC
*
1181871 TATATCCCGAAGGACC
1 TATGTCCCGAAGGACC
1181887 GCGTAGACCC
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
18 50 0.75
19 17 0.25
ACGTcount: A:0.29, C:0.33, G:0.20, T:0.18
Consensus pattern (18 bp):
TATGTCCCGAAGGACCAC
Found at i:1181866 original size:37 final size:36
Alignment explanation
Indices: 1181798--1181886 Score: 151
Period size: 37 Copynumber: 2.4 Consensus size: 36
1181788 TTATAACACA
1181798 TATGTCCCGAAGGACCACTATGTCCCGAAGGACCAC
1 TATGTCCCGAAGGACCACTATGTCCCGAAGGACCAC
*
1181834 TATGTCCCGAATGACCACATATGTCCCGAAGGACCAC
1 TATGTCCCGAAGGACCAC-TATGTCCCGAAGGACCAC
*
1181871 TATATCCCGAAGGACC
1 TATGTCCCGAAGGACC
1181887 GCGTAGACCC
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
36 17 0.35
37 32 0.65
ACGTcount: A:0.29, C:0.33, G:0.20, T:0.18
Consensus pattern (36 bp):
TATGTCCCGAAGGACCACTATGTCCCGAAGGACCAC
Found at i:1182648 original size:24 final size:20
Alignment explanation
Indices: 1182599--1182656 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 20
1182589 TTCCCATTGA
*
1182599 AGTGCATCGGTGCATTCTAC
1 AGTGCATCGATGCATTCTAC
1182619 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC--T-AC
1182642 AGGTGCATCGATGCA
1 A-GTGCATCGATGCA
1182657 CTACCATGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 16 0.48
22 1 0.03
23 3 0.09
24 13 0.39
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (20 bp):
AGTGCATCGATGCATTCTAC
Found at i:1183215 original size:3 final size:3
Alignment explanation
Indices: 1183203--1183234 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
1183193 AGAAATTAAT
1183203 CAA C-A CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1183235 AACCCCAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.66, C:0.34, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:1189569 original size:2 final size:2
Alignment explanation
Indices: 1189487--1189556 Score: 140
Period size: 2 Copynumber: 35.0 Consensus size: 2
1189477 ATATTCATTC
1189487 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1189529 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1189557 CCTTAACATA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1189817 original size:18 final size:18
Alignment explanation
Indices: 1189791--1189858 Score: 109
Period size: 18 Copynumber: 3.8 Consensus size: 18
1189781 GCGTAGAATT
1189791 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
1189809 TGTCTCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
1189827 TGTCCTGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
1189845 TATCCCGAAGGACC
1 TGTCCCGAAGGACC
1189859 GCGTAGACCC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.19
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:1190618 original size:24 final size:20
Alignment explanation
Indices: 1190569--1190626 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 20
1190559 TTCCCATTGA
*
1190569 AGTGCATCGGTGCATTCTAC
1 AGTGCATCGATGCATTCTAC
1190589 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC--T-AC
1190612 AGGTGCATCGATGCA
1 A-GTGCATCGATGCA
1190627 CTACCATGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 16 0.48
22 1 0.03
23 3 0.09
24 13 0.39
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (20 bp):
AGTGCATCGATGCATTCTAC
Found at i:1190701 original size:19 final size:19
Alignment explanation
Indices: 1190677--1190728 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
1190667 TTTTAAGGGG
*
1190677 ATGCATCGATGCACTCCTT
1 ATGCATCGATGCACTCCTC
1190696 ATGCATCGATGCACTCCTC
1 ATGCATCGATGCACTCCTC
*
1190715 ATGAATCGATGCAC
1 ATGCATCGATGCAC
1190729 CAACCGTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (19 bp):
ATGCATCGATGCACTCCTC
Found at i:1193138 original size:24 final size:24
Alignment explanation
Indices: 1193111--1193231 Score: 91
Period size: 27 Copynumber: 4.7 Consensus size: 24
1193101 TTCATCATTA
1193111 TATAATTTATATTAATAAAATATT
1 TATAATTTATATTAATAAAATATT
* *
1193135 TATAATTAATATTAATATAAATTATA
1 TATAATTTATATTAATA-AAA-TATT
* *
1193161 TATTAATTAATATTAATAATTATATT
1 TA-TAATTTATATTAATAA-AATATT
* *
1193187 AATATTAACTTATA-TAATATAATAGTT
1 --TA-TAATTTATATTAATAAAATA-TT
*
1193214 TATAATTTGTTATTAATA
1 TATAATTT-ATATTAATA
1193232 TTAATATAAA
Statistics
Matches: 78, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
24 21 0.27
25 7 0.09
26 17 0.22
27 23 0.29
28 10 0.13
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.50
Consensus pattern (24 bp):
TATAATTTATATTAATAAAATATT
Found at i:1193150 original size:6 final size:6
Alignment explanation
Indices: 1193119--1193269 Score: 66
Period size: 6 Copynumber: 24.7 Consensus size: 6
1193109 TATATAATTT
* *
1193119 ATATTA ATA-AA ATATTT ATAATTA ATATTA ATA-TA A-ATTA TATATT-
1 ATATTA ATATTA ATATTA AT-ATTA ATATTA ATATTA ATATTA -ATATTA
*
1193165 A-ATTA ATATTA ATAATT- ATATTA ATATTA ACTTATATA ATA-TA ATAGTTT
1 ATATTA ATATTA AT-ATTA ATATTA ATATTA A--TAT-TA ATATTA ATA-TTA
* * * * * *
1193215 ATAATTTG TTATTA ATATTA ATA-TA AAATATA GTCTATA AAATTA ATATTA
1 AT-A-TTA ATATTA ATATTA ATATTA ATAT-TA ATAT-TA ATATTA ATATTA
1193266 ATAT
1 ATAT
1193270 AAACTATATT
Statistics
Matches: 110, Mismatches: 18, Indels: 34
0.68 0.11 0.21
Matches are distributed among these distances:
4 4 0.04
5 23 0.21
6 49 0.45
7 24 0.22
8 7 0.06
9 3 0.03
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (6 bp):
ATATTA
Found at i:1193202 original size:18 final size:17
Alignment explanation
Indices: 1193134--1193194 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
1193124 AATAAAATAT
1193134 TTATA-ATTAATATTAA
1 TTATATATTAATATTAA
*
1193150 -TATAAATTATATATTAA
1 TTATATATTA-ATATTAA
1193167 TTA-ATATTAATAATTATA
1 TTATATATTAAT-ATTA-A
1193185 TTA-ATATTAA
1 TTATATATTAA
1193195 CTTATATAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
15 4 0.10
16 6 0.15
17 16 0.41
18 13 0.33
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTATATATTAATATTAA
Found at i:1193207 original size:45 final size:42
Alignment explanation
Indices: 1193107--1193207 Score: 105
Period size: 45 Copynumber: 2.3 Consensus size: 42
1193097 AAATTTCATC
* *
1193107 ATTATATAATTTATATTAATAAAATATTTATAATTAATATTA
1 ATTATATAATATATATTAATAAAATAATTATAATTAATATTA
* * *
1193149 ATATAAATTATATATTAATTAATATTAATAATTAT-ATTAATATTA
1 AT-TATATAATATA-T-ATTAATA-AAATAATTATAATTAATATTA
1193194 ACTTATATAATATA
1 A-TTATATAATATA
1193208 ATAGTTTATA
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
42 2 0.04
43 8 0.17
44 1 0.02
45 27 0.57
46 9 0.19
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (42 bp):
ATTATATAATATATATTAATAAAATAATTATAATTAATATTA
Found at i:1193263 original size:31 final size:31
Alignment explanation
Indices: 1193225--1193286 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
1193215 ATAATTTGTT
1193225 ATTAATATTAATATAAAATATAGTCTATAAA
1 ATTAATATTAATATAAAATATAGTCTATAAA
* * *
1193256 ATTAATATTAATATAAACTATATTTTATAAA
1 ATTAATATTAATATAAAATATAGTCTATAAA
1193287 TTATATAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (31 bp):
ATTAATATTAATATAAAATATAGTCTATAAA
Found at i:1193276 original size:24 final size:25
Alignment explanation
Indices: 1193231--1193277 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
1193221 TGTTATTAAT
**
1193231 ATTAATATAAAATATAGTCTATAAA
1 ATTAATATAAAATATAAACTATAAA
*
1193256 ATTAATAT-TAATATAAACTATA
1 ATTAATATAAAATATAAACTATA
1193278 TTTTATAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.38
Consensus pattern (25 bp):
ATTAATATAAAATATAAACTATAAA
Found at i:1193375 original size:18 final size:18
Alignment explanation
Indices: 1193362--1193404 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
1193352 ACTATAATTA
1193362 ATATTAATACTATATACT
1 ATATTAATACTATATACT
1193380 ATATTAATA-TA-A-ACT
1 ATATTAATACTATATACT
1193395 ATAGTTAATA
1 ATA-TTAATA
1193405 TGTTAATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 6 0.25
16 7 0.29
17 2 0.08
18 9 0.38
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (18 bp):
ATATTAATACTATATACT
Found at i:1193464 original size:36 final size:35
Alignment explanation
Indices: 1193424--1193501 Score: 102
Period size: 36 Copynumber: 2.2 Consensus size: 35
1193414 TAATGTAAAC
* *
1193424 TATAGTTTATAAACTATCTGCTACATTAATACAAA
1 TATAGTTTATAAACTATATACTACATTAATACAAA
* * *
1193459 TTATAGTTTATAAAGTATATACTATATTAATATAAA
1 -TATAGTTTATAAACTATATACTACATTAATACAAA
1193495 TATAGTT
1 TATAGTT
1193502 AAGATAATTA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 7 0.19
36 30 0.81
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.42
Consensus pattern (35 bp):
TATAGTTTATAAACTATATACTACATTAATACAAA
Found at i:1193744 original size:24 final size:23
Alignment explanation
Indices: 1193700--1193748 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
1193690 ATATGTAGTT
*
1193700 TACATATAAATAGATTGTATATA
1 TACATATAAATAGATTATATATA
* *
1193723 TACATATACTATAGGTTATATATA
1 TACATATA-AATAGATTATATATA
1193747 TA
1 TA
1193749 TGTTTATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (23 bp):
TACATATAAATAGATTATATATA
Found at i:1193776 original size:34 final size:36
Alignment explanation
Indices: 1193717--1193785 Score: 97
Period size: 34 Copynumber: 2.0 Consensus size: 36
1193707 AAATAGATTG
* *
1193717 TATATATACATATACTATAGGTTATATATATATGTT
1 TATATATACATATACTATAGGTTATACATACATGTT
*
1193753 TATATATAC-TATAC-ATAGTTTATACATACATGT
1 TATATATACATATACTATAGGTTATACATACATGT
1193786 ACTATAAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 16 0.53
35 5 0.17
36 9 0.30
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (36 bp):
TATATATACATATACTATAGGTTATACATACATGTT
Found at i:1193821 original size:52 final size:53
Alignment explanation
Indices: 1193617--1193821 Score: 146
Period size: 56 Copynumber: 3.6 Consensus size: 53
1193607 TGTTTAAAAC
* * * *
1193617 CTATAGGTTACATATATAGTTTATATAAACTATATATAGATTGTATATATACATAATA
1 CTATAAGTTACATATATAGTTTACAT----TATACATAGATTGTATACATACAT-ATA
* * * *
1193675 TATACTATAGATTACATATGTAGTTTACA-TATAAATAGATTGTATATATACATATA
1 -CTA-TA-AG-TTACATATATAGTTTACATTATACATAGATTGTATACATACATATA
* * * *
1193731 CTATAGGTTATATATATATGTTTATATATACTATACATAG-TT-TATACATACATGTA
1 CTATAAGTTACATATATA-G-TT-TACAT--TATACATAGATTGTATACATACATATA
1193787 CTATAAGTTACATATATAGTTTACATGTATACATA
1 CTATAAGTTACATATATAGTTTACAT-TATACATA
1193822 TGCTATATGT
Statistics
Matches: 120, Mismatches: 17, Indels: 25
0.74 0.10 0.15
Matches are distributed among these distances:
52 17 0.14
53 6 0.05
54 6 0.05
55 6 0.05
56 31 0.26
57 25 0.21
58 8 0.07
59 2 0.02
60 2 0.02
61 1 0.01
62 16 0.13
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (53 bp):
CTATAAGTTACATATATAGTTTACATTATACATAGATTGTATACATACATATA
Found at i:1194067 original size:15 final size:15
Alignment explanation
Indices: 1194047--1194083 Score: 65
Period size: 15 Copynumber: 2.4 Consensus size: 15
1194037 TAATTTACTT
1194047 TATATAGTTTATATA
1 TATATAGTTTATATA
1194062 TATATAGTTTATATA
1 TATATAGTTTATATA
1194077 TACTATA
1 TA-TATA
1194084 CATAGTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (15 bp):
TATATAGTTTATATA
Found at i:1194088 original size:20 final size:20
Alignment explanation
Indices: 1194056--1194099 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
1194046 TTATATAGTT
*
1194056 TATA-TATATATAGTTTATA
1 TATACTATACATAGTTTATA
1194075 TATACTATACATAGTTTATA
1 TATACTATACATAGTTTATA
*
1194095 CATAC
1 TATAC
1194100 ATTTATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (20 bp):
TATACTATACATAGTTTATA
Found at i:1194097 original size:318 final size:317
Alignment explanation
Indices: 1193732--1194325 Score: 1037
Period size: 318 Copynumber: 1.9 Consensus size: 317
1193722 ATACATATAC
1193732 TATAGGTTATATATATATGTTTATATATACTATACATAGTTTATACATACATGTACTATAAGTTA
1 TATAGGTTATATATATATGTTTATATATACTATACATAGTTTATACATACATGTACTATAAGTTA
* * *
1193797 CATATATAGTTTACATGTATACATATGCTATATGTTACATATATTAACTATTGTTTATAGACTAT
66 CATATATAGTTTACATATATACATATACTATAGGTTACATATATTAACTATTGTTTATAGACTAT
1193862 AGGTTAAGGTTACATATATAATTTATATAAACTATTGTTTATATAAACTATATATGAATTATCAA
131 AGGTTAAGGTTACATATATAATTTATATAAACTATTGTTTATATAAACTATATATGAATTATCAA
* *
1193927 CTATGTCTATACATATATATTTTATATAGTTTAA-AGTTTAGGGTTGCTATAAACTATAAACTTT
196 CTATGTCTATACATATATAATTCATATAGTTTAAGA-TTTAGGGTTGCTATAAACTATAAACTTT
*
1193991 ATTACTTTATATAGTTTATGCATAGTATTTCTATAAACTATATAAGTAATTTACTTTA
260 ACTACTTTATATAGTTTATGCATAGTATTTCTATAAACTATATAAGTAATTTACTTTA
* * *
1194049 TATAGTTTATATATATATAGTTTATATATACTATACATAGTTTATACATACATTTATTATAAGTT
1 TATAGGTTATATATATAT-GTTTATATATACTATACATAGTTTATACATACATGTACTATAAGTT
1194114 ACATATATAGTTTACATATATACATATACTATAGGTTACATATATTAACTATTGTTTATAGACTA
65 ACATATATAGTTTACATATATACATATACTATAGGTTACATATATTAACTATTGTTTATAGACTA
*
1194179 TAGGTTAATGTTACATATATAATTTATATAAACTATTGTTTATATAAACTATATATGAATTATCA
130 TAGGTTAAGGTTACATATATAATTTATATAAACTATTGTTTATATAAACTATATATGAATTATCA
* * * *
1194244 ACTGTGTCTATACATATATAATTCATATAGTTTAGGATTTAGGGTTTCTATAAACTATATACTTT
195 ACTATGTCTATACATATATAATTCATATAGTTTAAGATTTAGGGTTGCTATAAACTATAAACTTT
1194309 ACTACTTTATATAGTTT
260 ACTACTTTATATAGTTT
1194326 TATATATATA
Statistics
Matches: 261, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
317 17 0.07
318 243 0.93
319 1 0.00
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.45
Consensus pattern (317 bp):
TATAGGTTATATATATATGTTTATATATACTATACATAGTTTATACATACATGTACTATAAGTTA
CATATATAGTTTACATATATACATATACTATAGGTTACATATATTAACTATTGTTTATAGACTAT
AGGTTAAGGTTACATATATAATTTATATAAACTATTGTTTATATAAACTATATATGAATTATCAA
CTATGTCTATACATATATAATTCATATAGTTTAAGATTTAGGGTTGCTATAAACTATAAACTTTA
CTACTTTATATAGTTTATGCATAGTATTTCTATAAACTATATAAGTAATTTACTTTA
Found at i:1194331 original size:2 final size:2
Alignment explanation
Indices: 1194326--1194627 Score: 146
Period size: 2 Copynumber: 156.0 Consensus size: 2
1194316 TATATAGTTT
1194326 TA TA TA TA TA TA TA TA TA T- TA TA TA TA -A TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1194366 TA TA TA TA TA TA TA TA T- TA CT- TA TA T- TA GT- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA -TA TA TA TA TA TA
* * * * *
1194406 CTA TA T- TA -A GA TA AA T- TA TA -A TT TA TA AA CTA -A TA T- TT
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
* * *
1194444 TA TA TA GTT TA TA CA TA TA TA GTT TA TA TA TA TA TA TA TA TA TA
1 TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
* * *
1194488 TA TA TA TA TA TA CTA TA T- TA -A TA TA AA T- TA TA GTT TA TA AA
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* * * * * *
1194529 CTA TA TA CTT TT TA TA -A TT TA TA CA TA TA TA GTT TA TA TA CA
1 -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
* * *
1194571 TA GTT TA TA TA TA TA -A T- TCA TA TA AA CA TA -A TA TA TA TA TA
1 TA -TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA
1194612 T- TA TA -A TA -A T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
1194628 GTTTATAATA
Statistics
Matches: 229, Mismatches: 35, Indels: 72
0.68 0.10 0.21
Matches are distributed among these distances:
1 23 0.10
2 191 0.83
3 15 0.07
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:1194353 original size:318 final size:316
Alignment explanation
Indices: 1193718--1194382 Score: 1025
Period size: 318 Copynumber: 2.1 Consensus size: 316
1193708 AATAGATTGT
* *
1193718 ATATATACATATACTATAGGTTATATATATATGTTTATATATACTATACATAGTTTATACATACA
1 ATATATATATATA-TATAGTTTATATATATATGTTTATATATACTATACATAGTTTATACATACA
* * *
1193783 TGTACTATAAGTTACATATATAGTTTACATGTATACATATGCTATATGTTACATATATTAACTAT
65 TGTACTATAAGTTACATATATAGTTTACATATATACATATACTATAGGTTACATATATTAACTAT
1193848 TGTTTATAGACTATAGGTTAAGGTTACATATATAATTTATATAAACTATTGTTTATATAAACTAT
130 TGTTTATAGACTATAGGTTAAGGTTACATATATAATTTATATAAACTATTGTTTATATAAACTAT
* *
1193913 ATATGAATTATCAACTATGTCTATACATATATATTTTATATAGTTTAAAGTTTAGGGTTGCTATA
195 ATATGAATTATCAACTATGTCTATACATATATAATTCATATAGTTTAAAGTTTAGGGTTGCTATA
* * * *
1193978 AACTATAAACTTTATTACTTTATATAGTTTATGCATAGTATTTCTATAAACTATATA
260 AACTATAAACTTTACTACTTTATATAGTTTATACATAGTATATATATAAACTATATA
* *
1194035 AGTA-ATTTACTTTATATAGTTTATATATATATAGTTTATATATACTATACATAGTTTATACATA
1 A-TATATATA-TATATATAGTTTATATATATAT-GTTTATATATACTATACATAGTTTATACATA
* *
1194099 CATTTATTATAAGTTACATATATAGTTTACATATATACATATACTATAGGTTACATATATTAACT
63 CATGTACTATAAGTTACATATATAGTTTACATATATACATATACTATAGGTTACATATATTAACT
*
1194164 ATTGTTTATAGACTATAGGTTAATGTTACATATATAATTTATATAAACTATTGTTTATATAAACT
128 ATTGTTTATAGACTATAGGTTAAGGTTACATATATAATTTATATAAACTATTGTTTATATAAACT
* * *
1194229 ATATATGAATTATCAACTGTGTCTATACATATATAATTCATATAGTTT-AGGATTTAGGGTTTCT
193 ATATATGAATTATCAACTATGTCTATACATATATAATTCATATAGTTTAAAG-TTTAGGGTTGCT
* * *
1194293 ATAAACTATATACTTTACTACTTTATATAGTTTTATATATA-TATATATATATTA-TATATA
257 ATAAACTATAAACTTTACTACTTTATATAG-TTTATACATAGTATATATATA-AACTATATA
*
1194353 ATATATATATATATATA-TATATATATATAT
1 ATATATATATATATATAGTTTATATATATAT
1194383 TACTTATATT
Statistics
Matches: 316, Mismatches: 25, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
316 12 0.04
317 32 0.10
318 263 0.83
319 9 0.03
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (316 bp):
ATATATATATATATATAGTTTATATATATATGTTTATATATACTATACATAGTTTATACATACAT
GTACTATAAGTTACATATATAGTTTACATATATACATATACTATAGGTTACATATATTAACTATT
GTTTATAGACTATAGGTTAAGGTTACATATATAATTTATATAAACTATTGTTTATATAAACTATA
TATGAATTATCAACTATGTCTATACATATATAATTCATATAGTTTAAAGTTTAGGGTTGCTATAA
ACTATAAACTTTACTACTTTATATAGTTTATACATAGTATATATATAAACTATATA
Found at i:1194564 original size:15 final size:15
Alignment explanation
Indices: 1194444--1194585 Score: 78
Period size: 15 Copynumber: 10.3 Consensus size: 15
1194434 ACTAATATTT
1194444 TATATAGTTTATACA
1 TATATAGTTTATACA
*
1194459 TATATAGTTTATATA
1 TATATAGTTTATACA
* *
1194474 TATATA-TATATATA
1 TATATAGTTTATACA
*
1194488 TATATA-TATATAC-
1 TATATAGTTTATACA
* *
1194501 TATAT--TAATATAAA
1 TATATAGT-TTATACA
*
1194515 T-TATAGTTTATAAA
1 TATATAGTTTATACA
*
1194529 CTATATACTTT-T---
1 -TATATAGTTTATACA
1194541 TATA-A-TTTATACA
1 TATATAGTTTATACA
1194554 TATATAGTTTAT--A
1 TATATAGTTTATACA
* *
1194567 TACATAGTTTATATA
1 TATATAGTTTATACA
1194582 TATA
1 TATA
1194586 ATTCATATAA
Statistics
Matches: 105, Mismatches: 8, Indels: 28
0.74 0.06 0.20
Matches are distributed among these distances:
9 3 0.03
10 2 0.02
11 4 0.04
12 1 0.01
13 29 0.28
14 27 0.26
15 32 0.30
16 7 0.07
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (15 bp):
TATATAGTTTATACA
Found at i:1194607 original size:95 final size:94
Alignment explanation
Indices: 1194428--1194618 Score: 244
Period size: 95 Copynumber: 2.0 Consensus size: 94
1194418 AAATTATAAT
* *
1194428 TTATAAACTAATATTTTATATAGTTTATACATATATAGTTTATATATATATATATATATATATAT
1 TTATAAACTAATATTTTATATAATTTATACATATATAGTTTATATACATATATATATATATATAT
* * *
1194493 ATATATACTATATTAATATAAATTATAGT
66 ATATAAACTATAATAATATAAATTATAAT
*
1194522 TTATAAACTATATACTTTT-TATAATTTATACATATATAGTTTATATACATAGTTTATATATATA
1 TTATAAACTA-ATA-TTTTATATAATTTATACATATATAGTTTATATACATA-TATATATATATA
*
1194586 -ATTCATATAAAC-ATAATATATATATATTATAAT
63 TA-T-ATATAAACTATAATA-ATATAAATTATAAT
1194619 AATTATATAG
Statistics
Matches: 84, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
94 10 0.12
95 34 0.40
96 21 0.25
97 19 0.23
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.48
Consensus pattern (94 bp):
TTATAAACTAATATTTTATATAATTTATACATATATAGTTTATATACATATATATATATATATAT
ATATAAACTATAATAATATAAATTATAAT
Found at i:1194633 original size:18 final size:19
Alignment explanation
Indices: 1194598--1194637 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
1194588 TCATATAAAC
1194598 ATAATATATATATATTATA
1 ATAATATATATATATTATA
1194617 ATAAT-TATATAGT-TTATA
1 ATAATATATATA-TATTATA
1194635 ATA
1 ATA
1194638 TAAACATAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (19 bp):
ATAATATATATATATTATA
Found at i:1194651 original size:108 final size:109
Alignment explanation
Indices: 1194444--1194652 Score: 211
Period size: 108 Copynumber: 1.9 Consensus size: 109
1194434 ACTAATATTT
* * * *
1194444 TATATAGTTTATACATATATA-GTT-TATATATATATATATATATATATATATATATACTATATT
1 TATATAGTTTATA-ATACATAGTTTATATATATATATATATAAACATATATA--TATACTATATT
* *
1194507 AATATAAATTATAGTTTATAAACTATATACTTTTTATAATTTATACA
63 AATATAAATTATAGTTTATAAACTATAAACTGTTTATAATTTATACA
1194554 TATATAGTTTAT-ATACATAGTTTATATATATA-ATTCATATAAACATA-ATATATA-TATATT-
1 TATATAGTTTATAATACATAGTTTATATATATATA-T-ATATAAACATATATATATACTATATTA
*
1194614 ATAATAATTATATAGTTTAT-AA-TATAAACATAGTTTATA
64 AT-ATAAAT-TATAGTTTATAAACTATAAAC-T-GTTTATA
1194653 TATAAACTTA
Statistics
Matches: 84, Mismatches: 7, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
106 8 0.10
107 14 0.17
108 26 0.31
109 3 0.04
110 24 0.29
111 9 0.11
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.47
Consensus pattern (109 bp):
TATATAGTTTATAATACATAGTTTATATATATATATATATAAACATATATATATACTATATTAAT
ATAAATTATAGTTTATAAACTATAAACTGTTTATAATTTATACA
Found at i:1194657 original size:17 final size:18
Alignment explanation
Indices: 1194625--1194659 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
1194615 TAATAATTAT
1194625 ATAGTTTATAATATAAAC
1 ATAGTTTATAATATAAAC
1194643 ATAGTTTAT-ATATAAAC
1 ATAGTTTATAATATAAAC
1194660 TTATATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.40
Consensus pattern (18 bp):
ATAGTTTATAATATAAAC
Found at i:1194812 original size:2 final size:2
Alignment explanation
Indices: 1194807--1194870 Score: 57
Period size: 2 Copynumber: 34.5 Consensus size: 2
1194797 TATGTACTTA
* * *
1194807 AT AT AT -T AT AT AC AT AA AT CT -T AT AT AT -T AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
1194845 AT AT -T AT AT AT TT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1194871 AATTACATAA
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
1 5 0.10
2 45 0.90
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:1194837 original size:7 final size:7
Alignment explanation
Indices: 1194807--1194869 Score: 74
Period size: 7 Copynumber: 8.9 Consensus size: 7
1194797 TATGTACTTA
1194807 ATATATT
1 ATATATT
*
1194814 ATATACAT
1 ATATA-TT
* *
1194822 AAATCTT
1 ATATATT
1194829 ATATATT
1 ATATATT
1194836 ATATATT
1 ATATATT
1194843 ATATATT
1 ATATATT
1194850 ATATATT
1 ATATATT
1194857 -TATATAT
1 ATATAT-T
1194864 ATATAT
1 ATATAT
1194870 AAATTACATA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
6 5 0.11
7 33 0.70
8 9 0.19
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.52
Consensus pattern (7 bp):
ATATATT
Found at i:1194903 original size:11 final size:11
Alignment explanation
Indices: 1194888--1194922 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
1194878 TAATTTATTA
1194888 ATAAACTACAT
1 ATAAACTACAT
*
1194899 GTAAACTACAT
1 ATAAACTACAT
*
1194910 ATAAACTATAT
1 ATAAACTACAT
1194921 AT
1 AT
1194923 TATATATTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.03, T:0.31
Consensus pattern (11 bp):
ATAAACTACAT
Found at i:1195475 original size:17 final size:17
Alignment explanation
Indices: 1195449--1195500 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 17
1195439 TTCATATAAC
1195449 ATAATA-TATATA--TT
1 ATAATATTATATAGTTT
1195463 ATAATATTATATAGTTT
1 ATAATATTATATAGTTT
* *
1195480 ATAATATAAACATAGTTT
1 ATAATAT-TATATAGTTT
1195498 ATA
1 ATA
1195501 TATAGTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 6 0.19
15 6 0.19
17 9 0.28
18 11 0.34
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (17 bp):
ATAATATTATATAGTTT
Found at i:1195507 original size:11 final size:11
Alignment explanation
Indices: 1195491--1195515 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1195481 TAATATAAAC
1195491 ATAGTTTATAT
1 ATAGTTTATAT
1195502 ATAGTTTATAT
1 ATAGTTTATAT
1195513 ATA
1 ATA
1195516 AACTTATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (11 bp):
ATAGTTTATAT
Found at i:1195553 original size:19 final size:19
Alignment explanation
Indices: 1195499--1195553 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 19
1195489 ACATAGTTTA
1195499 TATATAGTTTATATATAAACT
1 TATATA-TTTA-ATATAAACT
1195520 TATATTATATTAATATAAA-T
1 TATA-TAT-TTAATATAAACT
1195540 TATATACTTTAATA
1 TATATA-TTTAATA
1195554 CTTTATATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
19 8 0.26
20 6 0.19
21 12 0.39
22 5 0.16
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (19 bp):
TATATATTTAATATAAACT
Found at i:1195672 original size:2 final size:2
Alignment explanation
Indices: 1195667--1195723 Score: 50
Period size: 2 Copynumber: 30.5 Consensus size: 2
1195657 TATGTACTTA
* * *
1195667 AT AT AT -T AT AT AC AT AA AT CT -T AT AT AT -T AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
1195705 AT AT TT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
1195724 AATTACATAA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
1 4 0.09
2 40 0.91
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:1195692 original size:22 final size:22
Alignment explanation
Indices: 1195667--1195723 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
1195657 TATGTACTTA
1195667 ATATATTATATA-CATAAATCTT
1 ATATATTATATATCATAAAT-TT
* *
1195689 ATATATTATATATTATATATTT
1 ATATATTATATATCATAAATTT
1195711 ATATATATATATA
1 ATATAT-TATATA
1195724 AATTACATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
22 20 0.65
23 11 0.35
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (22 bp):
ATATATTATATATCATAAATTT
Found at i:1195697 original size:7 final size:7
Alignment explanation
Indices: 1195667--1195722 Score: 60
Period size: 7 Copynumber: 7.9 Consensus size: 7
1195657 TATGTACTTA
1195667 ATATATT
1 ATATATT
*
1195674 ATATACAT
1 ATATA-TT
* *
1195682 AAATCTT
1 ATATATT
1195689 ATATATT
1 ATATATT
1195696 ATATATT
1 ATATATT
1195703 ATATATT
1 ATATATT
1195710 -TATATAT
1 ATATAT-T
1195717 ATATAT
1 ATATAT
1195723 AAATTACATA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
6 5 0.12
7 26 0.65
8 9 0.22
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.52
Consensus pattern (7 bp):
ATATATT
Found at i:1195756 original size:11 final size:11
Alignment explanation
Indices: 1195741--1195775 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
1195731 TAATTTATTA
1195741 ATAAACTACAT
1 ATAAACTACAT
*
1195752 GTAAACTACAT
1 ATAAACTACAT
*
1195763 ATAAACTATAT
1 ATAAACTACAT
1195774 AT
1 AT
1195776 TATATATTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.03, T:0.31
Consensus pattern (11 bp):
ATAAACTACAT
Found at i:1196304 original size:13 final size:13
Alignment explanation
Indices: 1196263--1196295 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
1196253 TAATTTATAC
1196263 ATATATAGTTTAT
1 ATATATAGTTTAT
*
1196276 ATACATAGTTTAT
1 ATATATAGTTTAT
1196289 ATATATA
1 ATATATA
1196296 ATTCATATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (13 bp):
ATATATAGTTTAT
Found at i:1196335 original size:18 final size:17
Alignment explanation
Indices: 1196308--1196360 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 17
1196298 TCATATAAAC
1196308 ATAATATATA-TATTATA
1 ATAATATATAGT-TTATA
1196325 ATAATTATATAGTTTATA
1 ATAA-TATATAGTTTATA
* *
1196343 ATATAAACATAGTTTATA
1 ATA-ATATATAGTTTATA
1196361 TATAGTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 4 0.13
18 25 0.81
19 2 0.06
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (17 bp):
ATAATATATAGTTTATA
Found at i:1196367 original size:11 final size:11
Alignment explanation
Indices: 1196351--1196375 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1196341 TAATATAAAC
1196351 ATAGTTTATAT
1 ATAGTTTATAT
1196362 ATAGTTTATAT
1 ATAGTTTATAT
1196373 ATA
1 ATA
1196376 AACTTATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (11 bp):
ATAGTTTATAT
Found at i:1196375 original size:71 final size:69
Alignment explanation
Indices: 1196273--1196410 Score: 165
Period size: 71 Copynumber: 2.0 Consensus size: 69
1196263 ATATATAGTT
*
1196273 TATATACATAGTTTATATATATAATTCATATAAACATAATATATATATT-ATA-ATAATTATATA
1 TATAAACATAGTTTATATATAT-ATTCATATAAAC-TAATAT-TATATTAATATA-AATTATATA
*
1196336 GTTTATAA
62 CTTTATAA
* *
1196344 TATAAACATAGTTTATATATAGT-TTATATATAAACTTATATTATATTAATATAAATTATATACT
1 TATAAACATAGTTTATATATA-TATT-CATATAAACTAATATTATATTAATATAAATTATATACT
1196408 TTA
64 TTA
1196411 ATACTTTATA
Statistics
Matches: 59, Mismatches: 4, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
69 6 0.10
70 23 0.39
71 29 0.49
72 1 0.02
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.46
Consensus pattern (69 bp):
TATAAACATAGTTTATATATATATTCATATAAACTAATATTATATTAATATAAATTATATACTTT
ATAA
Found at i:1196413 original size:19 final size:19
Alignment explanation
Indices: 1196359--1196413 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 19
1196349 ACATAGTTTA
1196359 TATATAGTTTATATATAAACT
1 TATATA-TTTA-ATATAAACT
1196380 TATATTATATTAATATAAA-T
1 TATA-TAT-TTAATATAAACT
1196400 TATATACTTTAATA
1 TATATA-TTTAATA
1196414 CTTTATATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
19 8 0.26
20 6 0.19
21 12 0.39
22 5 0.16
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (19 bp):
TATATATTTAATATAAACT
Found at i:1196532 original size:2 final size:2
Alignment explanation
Indices: 1196527--1196673 Score: 225
Period size: 2 Copynumber: 76.5 Consensus size: 2
1196517 TATGTACTTA
* *
1196527 AT AT AT -T AT AT AA AT CT AT AT -T AT -T AT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1196565 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
1196607 AG AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1196648 AT AT AT AT AT AT AT AT AT A- AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1196674 CATAATTTAT
Statistics
Matches: 133, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
1 6 0.05
2 127 0.95
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1196635 original size:853 final size:860
Alignment explanation
Indices: 1194509--1196591 Score: 3794
Period size: 853 Copynumber: 2.4 Consensus size: 860
1194499 ACTATATTAA
1194509 TATAAATTATAGTTTATAAACTATATACTTTTTATAATTTATACATATATAGTTTATATACATAG
1 TATAAATTATAGTTTATAAACTATATACTTTTTATAATTTATACATATATAGTTTATATACATAG
1194574 TTTATATATATAATTCATATAAACATAATATATATATATTATAATAATTATATAGTTTATAATAT
66 TTTATATATATAATTCATATAAACAT-A-ATATATATATTATAATAATTATATAGTTTATAATAT
1194639 AAAC-----------ATAGTTTATATATAAACTTATATTATATTAATATAAATTATATACTTTAA
129 AAACATAGTTTATATATAGTTTATATATAAACTTATATTATATTAATATAAATTATATACTTTAA
1194693 TACTTTATATAATTTATATATTGTTAACACATAGTTCATTAAAAACTTTACGGTTTATATATAAA
194 TACTTTATATAATTTATATATTGTTAACACATAGTTCATTAAAAACTTTACGGTTTATATATAAA
1194758 CTTTATAATTTTTAATATAAAACTATTTATATAGT-A-ATATATGTACTTAATATATTATATACA
259 CTTTATAATTTTTAATAT-AAACTATTTATATAGTAATATATATGTACTTAATATATTATATACA
*
1194821 TAAATCTTATATATTATATATTATATATTATATATTTATATATATATATAAATTACATAATTTAT
323 TAAATCTTATATATTATATA-TATATA-TATATA--TATATATATATATATA-TACATAATTTAT
1194886 TAATAAACTACATGTAAACTACATATAAACTATATATTATATATTTGTCTTTTTATATATTATGT
383 TAATAAACTACA-GTAAACTACATATAAACTATATATTATATATTTGTCTTTTTATATATTATGT
1194951 TATAATTGTTTTTTCAATTTTTTATATTTGCAATTTACTATATTTTTCATTATTTCTTTACATTT
447 TATAATTGTTTTTTCAATTTTTTATATTTGCAATTTACTATATTTTTCATTATTTCTTTACATTT
* *
1195016 TGCATTTATTTCGATTCCATCTTTTTTTGTTTTTTAATTTATTTAAATTTTAAGCCTTTCACTTT
512 TGCATTTATTTCGATTCCATCTTTTTGTGTTTTTTAATTTATTTAAAGTTTAAGCCTTTCACTTT
1195081 TATATGTATTCAGTTTAGTCTTTAAATTTATATTTGCATCTTCATTTGACCCATTGTTAGTTGTT
577 TATATGTATTCAGTTTAGTCTTTAAATTTATATTTGCATCTTCATTTGACCCATTGTTAGTTGTT
1195146 ATTTATATTTTTGTAATTGGCCCATAACTTTTTAAATGAGTATAAATTAGTCCTTTTTATATAAT
642 ATTTATATTTTTGTAATTGGCCCATAACTTTTTAAATGAGTATAAATTAGTCCTTTTTATATAAT
1195211 TTAAACCTCACATTTTAAATTGATTTCGATTTGGTCCCTTACCTATGTGTGTTGTTTAATTTTTA
707 TTAAACCTCACATTTTAAATTGATTTCGATTTGGTCCCTTACCTATGTGTGTTGTTTAATTTTTA
1195276 TTTTAAAATTTTATTTGTAATTTTACATTTCTTCAATTTTGTCCTTAAATTTATATTTTTTTACA
772 TTTTAAAATTTTATTTGTAATTTTACATTTCTTCAATTTTGTCCTTAAATTTATATTTTTTTACA
1195341 AAATTGACCCATGATTATTTTTTT
837 AAATTGACCCATGATTATTTTTTT
1195365 TATAAATTATAGTTTATAAACTATATACTTTTTATAATTTATACATATATAGTTTATATAC-T--
1 TATAAATTATAGTTTATAAACTATATACTTTTTATAATTTATACATATATAGTTTATATACATAG
1195427 TTTATATATA-AATTCATAT-AACATAATATATATATTATAAT-ATTATATAGTTTATAATATAA
66 TTTATATATATAATTCATATAAACATAATATATATATTATAATAATTATATAGTTTATAATATAA
1195489 ACATAGTTTATATATAGTTTATATATAAACTTATATTATATTAATATAAATTATATACTTTAATA
131 ACATAGTTTATATATAGTTTATATATAAACTTATATTATATTAATATAAATTATATACTTTAATA
1195554 CTTTATATAATTTATATATTGTTAACACATAGTTCATTAAAAACTTTACGGTTTATATATAAACT
196 CTTTATATAATTTATATATTGTTAACACATAGTTCATTAAAAACTTTACGGTTTATATATAAACT
1195619 TTATAATTTTTAATATAAACTATTTATATAGTAATATATATGTACTTAATATATTATATACATAA
261 TTATAATTTTTAATATAAACTATTTATATAGTAATATATATGTACTTAATATATTATATACATAA
* *
1195684 ATCTTATATATTATATAT-TATATATTTATATATATATATAAAT-TACATAATTTATTAATAAAC
326 ATCTTATATATTATATATATATATATATATATATATATATATATATACATAATTTATTAATAAAC
1195747 TACATGTAAACTACATATAAACTATATATTATATATTTGTCTTTTTATATATTATGTTATAATTG
391 TACA-GTAAACTACATATAAACTATATATTATATATTTGTCTTTTTATATATTATGTTATAATTG
1195812 TTTTTTCAATTTTTTATATTTGCAATTTACTATATTTTTCATTATTTCTTTACATTTTGCATTTA
455 TTTTTTCAATTTTTTATATTTGCAATTTACTATATTTTTCATTATTTCTTTACATTTTGCATTTA
*
1195877 TTTCGTTTCCATCTTTTTGTGTTTTTTAATTTATTTAAAGTTTAAGCCTTTCACTTTTATATGTA
520 TTTCGATTCCATCTTTTTGTGTTTTTTAATTTATTTAAAGTTTAAGCCTTTCACTTTTATATGTA
*
1195942 TTCAGTTTAGTCTTTAAATTTATATTTGTATCTTCATTTGACCCATTGTTAGTTGTTATTTATAT
585 TTCAGTTTAGTCTTTAAATTTATATTTGCATCTTCATTTGACCCATTGTTAGTTGTTATTTATAT
1196007 TTTTGTAATTGGCCCATAACTTTTTAAATGAGTATAAATTAGTCCTTTTTTATATAATTTAAACC
650 TTTTGTAATTGGCCCATAACTTTTTAAATGAGTATAAATTAGTCC-TTTTTATATAATTTAAACC
1196072 TCACATTTTAAATTGATTTCGATTTGGTCCCTTACCTATGTGTGTTGTTTAATTTTTATTTTAAA
714 TCACATTTTAAATTGATTTCGATTTGGTCCCTTACCTATGTGTGTTGTTTAATTTTTATTTTAAA
1196137 ATTTTATTTGTAATTTTACATTTCTTCAATTTTGTCCTTAAATTTATATTTTTTTACAAAATTGA
779 ATTTTATTTGTAATTTTACATTTCTTCAATTTTGTCCTTAAATTTATATTTTTTTACAAAATTGA
* *
1196202 TCCATGATTGTTTTTTT
844 CCCATGATTATTTTTTT
1196219 TATAAATTATAGTTTATAAACTATATACTTTTTATAATTTATACATATATAGTTTATATACATAG
1 TATAAATTATAGTTTATAAACTATATACTTTTTATAATTTATACATATATAGTTTATATACATAG
1196284 TTTATATATATAATTCATATAAACATAATATATATATTATAATAATTATATAGTTTATAATATAA
66 TTTATATATATAATTCATATAAACATAATATATATATTATAATAATTATATAGTTTATAATATAA
1196349 ACATAGTTTATATATAGTTTATATATAAACTTATATTATATTAATATAAATTATATACTTTAATA
131 ACATAGTTTATATATAGTTTATATATAAACTTATATTATATTAATATAAATTATATACTTTAATA
1196414 CTTTATATAATTTATATATTGTTAACACATAGTTCATTAAAAACTTTACGGTTTATATATAAACT
196 CTTTATATAATTTATATATTGTTAACACATAGTTCATTAAAAACTTTACGGTTTATATATAAACT
* **
1196479 TTATAATTTTTAATATAAACTATTTATATAGTAATATATATGTACTTAATATATTATATAAATCT
261 TTATAATTTTTAATATAAACTATTTATATAGTAATATATATGTACTTAATATATTATATACATAA
*
1196544 ATATTATTATATTATATATATATATATATATATATATATATATATATA
326 ATCTTA-TATATTATATATATATATATATATATATATATATATATATA
1196592 TATATATATA
Statistics
Matches: 1189, Mismatches: 15, Indels: 39
0.96 0.01 0.03
Matches are distributed among these distances:
848 23 0.02
849 16 0.01
850 1 0.00
851 5 0.00
852 9 0.01
853 331 0.28
854 225 0.19
855 15 0.01
856 61 0.05
857 15 0.01
858 29 0.02
859 157 0.13
860 265 0.22
861 12 0.01
862 23 0.02
863 2 0.00
ACGTcount: A:0.36, C:0.08, G:0.05, T:0.51
Consensus pattern (860 bp):
TATAAATTATAGTTTATAAACTATATACTTTTTATAATTTATACATATATAGTTTATATACATAG
TTTATATATATAATTCATATAAACATAATATATATATTATAATAATTATATAGTTTATAATATAA
ACATAGTTTATATATAGTTTATATATAAACTTATATTATATTAATATAAATTATATACTTTAATA
CTTTATATAATTTATATATTGTTAACACATAGTTCATTAAAAACTTTACGGTTTATATATAAACT
TTATAATTTTTAATATAAACTATTTATATAGTAATATATATGTACTTAATATATTATATACATAA
ATCTTATATATTATATATATATATATATATATATATATATATATATACATAATTTATTAATAAAC
TACAGTAAACTACATATAAACTATATATTATATATTTGTCTTTTTATATATTATGTTATAATTGT
TTTTTCAATTTTTTATATTTGCAATTTACTATATTTTTCATTATTTCTTTACATTTTGCATTTAT
TTCGATTCCATCTTTTTGTGTTTTTTAATTTATTTAAAGTTTAAGCCTTTCACTTTTATATGTAT
TCAGTTTAGTCTTTAAATTTATATTTGCATCTTCATTTGACCCATTGTTAGTTGTTATTTATATT
TTTGTAATTGGCCCATAACTTTTTAAATGAGTATAAATTAGTCCTTTTTATATAATTTAAACCTC
ACATTTTAAATTGATTTCGATTTGGTCCCTTACCTATGTGTGTTGTTTAATTTTTATTTTAAAAT
TTTATTTGTAATTTTACATTTCTTCAATTTTGTCCTTAAATTTATATTTTTTTACAAAATTGACC
CATGATTATTTTTTT
Found at i:1199518 original size:6 final size:6
Alignment explanation
Indices: 1199507--1199842 Score: 496
Period size: 6 Copynumber: 57.2 Consensus size: 6
1199497 TCGGCTCGGC
1199507 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG
* * * * *
1199555 TCGTGG TCGAGG TCGAGG TCGAGG TCGAGG T--AGG TCGTGG TCGTGG
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG
1199601 TCGT-G TCGTGG TCGTGG TCGTGG TCGTGG TCGT-G --GTGG TCGTGG
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG
1199645 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGGG TCGTGG TCGTGG
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGT-GG TCGTGG TCGTGG
* *
1199694 TCGTGG TCGTGG TCGAGG TAGTCGAG TCGTGG TCGTGG TC---G TCGTGG
1 TCGTGG TCGTGG TCGTGG TCGT-G-G TCGTGG TCGTGG TCGTGG TCGTGG
1199741 TCGTGG TCGTGG TCGTGG TCGTGG TCGT-G TCGTGGG TCGTGG TCGTGG
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGT-GG TCGTGG TCGTGG
1199789 TCGTGG -CGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG
1199836 TCGTGG T
1 TCGTGG T
1199843 AATACGTGTC
Statistics
Matches: 309, Mismatches: 6, Indels: 30
0.90 0.02 0.09
Matches are distributed among these distances:
3 5 0.02
4 5 0.02
5 16 0.05
6 266 0.86
7 13 0.04
8 4 0.01
ACGTcount: A:0.02, C:0.16, G:0.50, T:0.32
Consensus pattern (6 bp):
TCGTGG
Done.