genome.fa.s8297.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008297.1 Hibiscus syriacus cultivar Beakdansim tig00110983_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128232

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5478--5557	24	3.5	22	75	14	83	22	25	23	28	1.99
8077--8116	21	1.9	21	89	0	62	35	30	12	22	1.91
8142--8180	19	2.1	19	95	0	69	20	38	15	25	1.92
8077--8242	64	2.5	65	84	6	194	33	25	15	25	1.95
11812--11880	23	3.0	23	77	8	77	18	18	23	39	1.93
14745--14785	20	2.0	20	86	9	57	68	0	0	31	0.90
14789--14860	38	1.9	37	82	2	90	47	6	1	44	1.38
15758--15793	15	2.4	15	100	0	72	33	22	16	27	1.95
16333--16375	2	21.5	2	100	0	86	48	0	0	51	1.00
30426--30546	22	5.5	22	88	3	190	38	0	11	48	1.45
30570--30628	31	1.9	31	89	0	91	45	8	3	42	1.51
43845--43886	21	2.0	20	86	4	57	40	0	57	2	1.12
44009--44070	22	2.7	22	80	9	54	53	3	4	38	1.39
46110--46263	9	18.2	8	73	18	84	57	0	1	40	1.07
46103--46249	34	4.3	34	95	1	260	57	0	1	41	1.07
46134--46261	2	72.5	2	69	26	67	56	0	1	42	1.09
47359--47426	29	2.3	30	87	7	95	32	8	23	35	1.86
49220--49266	24	2.0	24	91	0	76	25	27	19	27	1.99
50098--50138	21	1.9	22	90	5	66	26	17	31	24	1.97
50175--50218	22	2.0	22	86	0	61	20	18	15	45	1.85
50483--50529	14	3.3	14	82	5	58	34	8	17	40	1.79
50545--50585	14	2.9	14	88	0	55	29	14	19	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50884--50963	22	3.7	21	73	23	67	42	1	1	55	1.16
51113--51187	25	3.0	26	81	9	86	52	0	1	46	1.09
55411--55454	23	2.0	21	86	8	61	75	2	0	22	0.92
57429--57482	20	2.7	20	82	8	65	31	33	11	24	1.90
57470--57557	20	4.3	20	72	2	86	35	23	15	25	1.95
57563--57617	20	2.8	20	94	0	83	38	23	16	21	1.93
57793--57830	16	2.5	15	84	12	51	28	5	0	65	1.14
60846--60881	18	2.0	18	94	0	63	55	25	0	19	1.43
61198--61261	20	3.2	20	90	0	101	14	21	25	39	1.91
61720--61756	18	2.1	18	89	0	56	32	5	10	51	1.60
61712--61764	24	2.2	24	86	0	70	35	3	13	47	1.61
62067--62155	39	2.3	39	90	3	135	49	16	13	20	1.79
62367--62405	20	2.0	20	84	0	51	38	17	20	23	1.93
62414--62469	20	2.8	20	91	0	94	14	19	28	37	1.91
62578--62631	28	1.9	28	84	0	72	48	18	1	31	1.59
62595--62631	14	2.6	14	95	0	65	48	18	2	29	1.62
64055--64154	21	4.7	21	76	6	85	25	20	32	23	1.98
73195--73254	10	6.7	10	69	30	55	58	21	11	8	1.59
73199--73248	16	3.1	16	94	5	91	58	24	12	6	1.56
73841--73916	36	2.1	36	100	0	152	44	13	10	31	1.77
74684--74729	14	3.3	14	90	0	74	52	26	13	8	1.69
87779--87836	29	2.0	29	86	0	80	31	27	12	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88226--88255	15	2.0	15	100	0	60	33	13	40	13	1.83
89425--89480	29	1.9	29	81	0	67	32	26	10	30	1.90
94155--94194	21	1.9	21	89	0	62	10	25	40	25	1.86
100766--100799	12	2.8	12	100	0	68	17	32	35	14	1.91
102600--102638	19	2.1	19	85	0	51	17	7	2	71	1.21
108193--108246	20	2.7	20	85	0	72	25	22	27	24	2.00
108312--108345	17	2.1	17	88	5	52	26	23	8	41	1.83
117149--117215	33	2.0	33	91	5	109	25	35	17	20	1.95

Tables:   1

The End!