genome.fa.s8299.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008299.1 Hibiscus syriacus cultivar Beakdansim tig00110985_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147011

Tables:   1   

This is table  1  of  1  ( 108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
814--1499	353	2.0	340	80	10	777	43	9	9	37	1.70
5545--5581	15	2.3	17	81	13	51	64	5	2	27	1.28
7802--7852	26	2.0	26	96	0	93	50	15	5	27	1.67
14086--14114	15	1.9	15	100	0	58	31	34	13	20	1.92
15057--15085	14	2.1	14	100	0	58	37	0	6	55	1.27
15790--15815	4	6.5	4	100	0	52	76	0	0	23	0.78
17747--17844	21	4.6	20	67	22	58	52	1	4	42	1.27
17835--17859	13	1.9	13	100	0	50	48	4	0	48	1.20
21020--21045	13	2.0	13	100	0	52	61	0	0	38	0.96
21294--21319	4	6.5	4	100	0	52	76	0	0	23	0.78
22165--22197	17	1.9	17	93	0	57	39	0	3	57	1.14
22208--22305	21	4.5	22	68	22	66	52	1	4	42	1.27
22598--22640	19	2.2	20	83	4	52	58	0	0	41	0.98
22665--22693	13	2.1	14	93	6	51	51	0	0	48	1.00
22238--22940	370	1.9	369	84	4	952	44	9	9	36	1.69
26397--26434	15	2.4	17	78	13	53	63	5	5	26	1.37
28557--28611	26	2.1	26	82	0	65	49	18	3	29	1.64
28646--28696	26	2.0	26	96	0	93	50	15	5	27	1.67
29282--29338	28	2.1	27	83	9	71	49	0	1	49	1.11
31971--32093	60	2.1	59	98	1	237	48	16	18	16	1.81
42182--42212	10	2.9	11	90	9	55	83	0	6	9	0.79
42595--42774	82	2.2	83	90	3	283	45	10	3	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44567--44631	26	2.6	25	75	4	69	50	20	1	27	1.57
46037--46089	26	2.0	26	96	0	97	50	13	3	32	1.59
46166--46228	30	2.2	28	85	5	81	50	0	1	47	1.10
48279--48306	14	2.0	14	100	0	56	35	0	7	57	1.26
50914--50950	17	2.1	18	90	5	58	37	2	2	56	1.28
50982--51023	15	2.8	16	82	13	54	57	0	0	42	0.99
50982--51023	14	2.8	15	82	7	50	57	0	0	42	0.99
51065--51089	13	1.9	13	100	0	50	48	4	0	48	1.20
51421--51449	13	2.1	14	93	6	51	51	0	0	48	1.00
51380--51439	26	2.3	25	76	18	61	51	1	0	46	1.10
54245--54288	19	2.2	20	84	4	54	56	0	2	40	1.11
54609--54639	11	2.8	11	95	0	53	58	0	0	41	0.98
54221--54946	372	2.0	357	83	6	904	45	8	9	36	1.68
54927--54997	25	2.8	26	68	19	60	46	0	1	52	1.09
54946--54999	20	2.6	21	82	5	65	50	0	1	48	1.11
54935--54997	20	3.0	20	79	4	63	49	0	1	49	1.10
54948--55009	21	3.0	21	80	4	72	50	0	1	48	1.10
59019--59055	15	2.3	17	81	13	51	64	5	2	27	1.28
61280--61330	26	2.0	26	96	0	93	50	15	5	27	1.67
67571--67599	15	1.9	15	100	0	58	31	34	13	20	1.92
68542--68570	14	2.1	14	100	0	58	37	0	6	55	1.27
69275--69300	4	6.5	4	100	0	52	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71236--71333	21	4.6	20	67	22	58	52	1	4	42	1.27
71324--71348	13	1.9	13	100	0	50	48	4	0	48	1.20
74509--74534	13	2.0	13	100	0	52	61	0	0	38	0.96
74783--74808	4	6.5	4	100	0	52	76	0	0	23	0.78
75652--75684	17	1.9	17	93	0	57	39	0	3	57	1.14
75698--75758	10	6.0	10	71	9	52	57	0	3	39	1.15
76086--76128	19	2.2	20	83	4	52	58	0	0	41	0.98
76153--76181	13	2.1	14	93	6	51	51	0	0	48	1.00
75725--76428	371	1.9	369	84	4	945	44	9	9	36	1.69
79886--79923	15	2.4	17	78	13	53	63	5	5	26	1.37
82047--82101	26	2.1	26	82	0	65	49	18	3	29	1.64
82136--82186	26	2.0	26	96	0	93	50	15	5	27	1.67
82770--82826	28	2.1	27	83	9	71	49	0	1	49	1.11
85462--85585	60	2.1	60	100	0	248	49	16	18	16	1.80
102930--102975	23	2.0	23	86	0	65	63	0	2	34	1.07
102934--102966	16	2.0	16	94	5	57	66	0	0	33	0.92
103032--103073	12	3.6	12	83	3	50	61	0	2	35	1.09
103101--103133	16	2.1	16	88	11	50	75	0	6	18	1.00
104560--104603	21	2.2	20	83	4	52	31	11	4	52	1.57
105261--105335	31	2.4	30	73	6	78	30	16	1	52	1.52
108516--108548	16	2.0	17	88	5	50	45	9	0	45	1.35
120058--120111	22	2.5	22	100	0	108	24	16	18	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121054--121078	8	3.1	8	100	0	50	12	0	0	88	0.53
121738--121777	21	1.9	21	89	0	62	30	25	22	22	1.99
124570--124726	21	7.8	20	72	7	84	38	25	16	19	1.92
124694--124827	20	6.7	20	81	5	144	35	24	20	19	1.95
125188--125258	33	2.2	33	92	0	115	11	22	18	47	1.80
125338--125434	21	4.7	21	88	2	151	47	16	24	11	1.79
125336--125434	41	2.4	42	89	1	155	47	16	25	11	1.79
125419--125475	14	3.7	14	75	20	60	43	22	24	8	1.81
125411--125491	33	2.5	33	95	0	144	46	22	22	8	1.78
125487--125584	19	5.7	19	68	22	81	10	22	22	44	1.82
125509--125598	14	5.7	14	72	23	72	8	23	23	44	1.81
125492--125606	33	3.5	33	95	0	212	9	22	20	46	1.79
127296--127948	93	7.1	93	98	0	1276	21	12	19	45	1.83
127296--127948	185	3.5	186	98	0	1276	21	12	19	45	1.83
127296--127948	278	2.4	278	98	1	1274	21	12	19	45	1.83
127996--128124	19	7.3	19	75	17	125	45	28	17	8	1.77
128032--128124	33	2.8	32	91	4	150	46	27	18	7	1.76
127996--128124	52	2.5	52	74	14	140	45	28	17	8	1.77
128120--128254	19	7.6	19	73	16	119	11	18	23	46	1.81
128142--128198	14	3.7	14	72	20	51	10	19	22	47	1.80
128125--128217	33	2.8	33	91	0	159	10	19	21	48	1.79
130180--130215	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130322--130419	19	5.4	19	83	13	134	46	17	21	14	1.83
130322--130434	53	2.2	53	96	1	210	46	17	22	14	1.84
130452--130506	14	3.6	14	73	21	56	10	23	20	45	1.82
130466--130663	19	11.4	19	75	21	211	13	21	18	46	1.83
130466--130635	52	3.2	52	99	0	331	13	22	17	46	1.83
130444--130677	33	6.9	33	79	13	278	13	22	18	45	1.84
132958--132982	12	2.1	12	100	0	50	0	28	0	72	0.86
133157--133202	24	2.0	23	87	12	67	36	21	15	26	1.93
133885--134154	20	13.5	20	86	2	274	20	18	24	37	1.94
133885--134154	40	6.8	40	87	5	307	20	18	24	37	1.94
134121--134218	21	4.8	20	75	15	83	22	17	22	37	1.94
134121--134219	42	2.4	43	78	8	107	22	17	23	37	1.94
134628--134702	36	2.1	36	100	0	150	36	8	10	45	1.68
135118--135145	13	2.2	13	100	0	56	53	10	14	21	1.70
135389--135413	6	4.2	6	100	0	50	0	16	48	36	1.46
142337--142461	31	4.0	31	94	2	207	19	18	23	39	1.93
144797--144834	2	20.0	2	89	10	62	52	0	0	47	1.00
144797--144834	13	2.9	14	92	7	62	52	0	0	47	1.00
144797--144834	17	2.2	17	100	0	76	52	0	0	47	1.00
144797--144846	15	3.2	15	85	5	64	54	0	2	44	1.11

Tables:   1

The End!