genome.fa.s83.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000083.1 Hibiscus syriacus cultivar Beakdansim tig00000151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92575

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7561--7599	17	2.3	17	81	0	51	56	15	12	15	1.68
10523--10602	10	7.5	10	70	18	54	33	3	22	40	1.72
10529--10604	23	3.5	22	78	7	75	35	3	22	38	1.73
15000--15033	2	18.0	2	88	11	54	50	0	0	50	1.00
15470--15507	12	3.2	12	85	3	51	63	0	2	34	1.09
15546--15602	29	1.9	30	82	10	73	59	3	7	29	1.40
16394--16452	22	2.5	24	83	13	86	0	32	25	42	1.55
16407--16453	22	2.1	22	100	0	94	0	36	23	40	1.55
16938--17020	3	26.3	3	78	9	85	61	0	0	38	0.96
16938--16998	26	2.3	26	83	10	72	63	0	0	36	0.94
16948--17018	20	3.5	20	88	5	99	60	0	0	39	0.97
17302--18138	74	11.4	74	92	1	1398	32	20	18	27	1.97
17302--18138	147	5.7	147	94	1	1424	32	20	18	27	1.97
17302--18138	221	3.8	221	92	2	1403	32	20	18	27	1.97
23122--23163	12	3.3	13	84	15	61	0	14	2	83	0.75
23120--23165	8	5.6	8	83	16	51	0	13	2	84	0.71
25647--25679	17	2.1	17	88	11	52	57	12	12	18	1.64
27659--27686	5	5.6	5	100	0	56	82	0	17	0	0.68
30652--30847	94	2.1	95	85	2	261	36	15	23	24	1.94
30654--30875	94	2.4	94	83	3	232	35	15	23	24	1.94
31194--31550	59	6.1	59	89	3	504	33	14	21	30	1.93
31894--32503	68	9.0	68	93	0	1040	29	15	25	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32527--32698	45	3.8	46	79	11	201	45	7	20	26	1.78
33718--33745	2	14.0	2	100	0	56	50	0	0	50	1.00
33769--33817	19	2.5	19	81	18	57	48	8	2	40	1.44
34006--34061	27	2.1	27	89	0	85	35	21	35	7	1.81
37596--37630	18	1.9	18	88	0	52	5	17	37	40	1.73
37766--37797	2	16.0	2	100	0	64	50	0	0	50	1.00
42939--42976	14	2.7	14	84	11	51	21	10	28	39	1.86
45306--45416	36	3.1	35	80	11	120	29	16	10	43	1.82
45908--46379	133	3.6	133	82	2	558	28	33	16	22	1.95
45926--46418	264	1.9	264	81	3	607	28	32	16	22	1.95
51628--51661	17	2.0	17	88	11	52	47	17	14	20	1.83
51927--51972	19	2.3	20	85	10	60	43	0	4	52	1.21
52082--52130	19	2.7	18	78	6	55	53	0	6	40	1.26
52175--52207	16	1.9	18	88	11	52	48	6	0	45	1.27
57266--57403	60	2.3	59	82	3	170	32	17	16	33	1.93
57601--57713	60	1.9	60	85	7	158	35	15	18	30	1.92
57614--57737	60	2.1	60	81	6	144	36	15	16	32	1.90
59279--59322	23	2.0	22	81	4	52	6	13	2	77	1.07
61862--62105	95	2.5	96	87	3	330	31	18	19	31	1.96
63363--63733	116	3.0	124	81	8	472	32	26	18	23	1.97
63840--63932	36	2.6	36	86	5	107	25	21	15	37	1.92
63865--63944	36	2.2	37	97	2	153	30	21	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63978--64107	37	3.6	37	78	8	158	20	20	16	42	1.89
63960--64114	37	4.3	35	74	11	134	23	20	15	41	1.90
63960--64114	72	2.1	72	93	1	265	23	20	15	41	1.90
64220--64390	84	2.0	84	86	0	234	33	26	15	23	1.95
64630--64662	3	10.7	3	93	6	57	33	0	0	66	0.92
65813--65847	17	2.1	16	89	5	52	14	0	5	80	0.89
65793--65850	15	3.9	14	78	14	53	10	0	10	79	0.94
65715--65927	106	2.0	106	95	0	383	16	6	4	72	1.22
65727--65956	106	2.2	104	87	6	297	19	7	3	70	1.26
65971--66097	8	15.5	8	70	12	53	13	8	2	75	1.13
65969--66019	26	2.0	26	84	0	66	11	5	5	76	1.14
66065--66095	4	7.8	4	100	0	62	22	0	0	77	0.77
67936--67984	14	3.8	14	69	20	52	42	0	0	57	0.99
68000--68067	18	3.5	20	77	20	65	38	1	1	58	1.16
68525--68584	31	1.9	31	89	0	93	45	10	5	40	1.60
69147--69197	14	3.8	13	79	7	57	70	1	0	27	0.98
69143--69196	21	2.7	20	78	13	65	72	1	0	25	0.95
75396--75436	12	3.2	13	81	18	50	60	0	0	39	0.96
75480--75510	14	2.2	14	94	0	53	35	0	0	64	0.94
76747--76879	60	2.2	60	82	5	153	39	18	12	30	1.87
78656--78683	7	4.0	7	100	0	56	28	42	0	28	1.56
81644--81794	77	2.0	77	94	0	266	23	23	14	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85159--85331	56	3.0	59	84	5	253	30	17	23	28	1.97
91649--91816	55	3.0	58	79	8	197	27	17	24	30	1.97

Tables:   1

The End!