genome.fa.s830.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000830.1 Hibiscus syriacus cultivar Beakdansim tig00001606_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151632

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2873--2938	19	3.5	19	97	0	123	24	16	33	25	1.96
2947--2984	20	1.9	20	88	0	58	36	18	18	26	1.94
3617--3670	2	27.0	2	100	0	108	50	0	0	50	1.00
6664--6715	19	2.7	19	100	0	104	30	17	30	21	1.96
6759--6795	19	1.9	19	94	0	65	24	18	32	24	1.97
6787--6844	20	2.7	20	81	10	62	32	18	20	27	1.97
9415--9544	63	2.0	65	89	4	201	36	36	10	16	1.83
9517--9594	36	2.2	36	90	0	120	33	46	10	10	1.72
9537--9594	24	2.4	24	76	0	62	29	50	10	10	1.70
17726--17855	60	2.2	59	90	1	197	30	10	26	32	1.90
24418--24500	33	2.5	33	92	0	130	26	14	24	34	1.94
24418--24528	33	3.4	33	87	2	125	25	13	27	33	1.93
29653--29678	2	13.0	2	100	0	52	50	0	0	50	1.00
38242--38294	3	18.3	3	80	7	65	39	1	0	58	1.09
38233--38291	17	3.4	17	84	11	75	42	1	0	55	1.09
38242--38292	20	2.5	20	87	0	75	39	1	0	58	1.09
39790--39822	9	3.8	9	84	8	50	45	0	0	54	0.99
43213--43303	45	2.0	46	89	2	139	27	18	25	28	1.98
48300--48336	15	2.5	15	95	0	65	56	8	18	16	1.64
50033--50264	99	2.3	99	93	0	401	34	16	18	30	1.94
50231--50278	20	2.4	20	86	6	62	29	22	16	31	1.96
50148--50383	119	2.0	119	94	0	409	33	16	19	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50027--50579	218	2.5	218	94	0	980	34	16	17	30	1.93
50251--50477	99	2.3	99	90	0	355	34	16	17	31	1.93
50350--50631	119	2.4	119	91	1	449	32	17	17	31	1.94
50584--50621	20	1.9	20	88	0	58	26	21	18	34	1.96
50763--50859	3	33.0	3	87	4	135	34	3	0	62	1.11
52777--52809	9	3.8	9	84	8	50	45	0	0	54	0.99
55558--55767	65	3.3	63	80	11	221	30	23	18	27	1.98
63111--63153	21	2.0	21	86	0	59	9	39	16	34	1.80
64234--64341	46	2.4	46	80	13	125	34	18	17	29	1.94
64399--64442	19	2.3	19	100	0	88	20	31	20	27	1.97
73435--73474	21	1.9	21	84	0	53	25	20	17	37	1.94
75015--75065	27	1.9	26	84	4	66	70	0	11	17	1.16
75688--75858	85	2.0	82	87	5	245	54	13	2	29	1.51
79125--79200	38	2.0	38	100	0	152	28	28	18	23	1.98
89282--89333	2	26.0	2	100	0	104	50	0	50	0	1.00
92248--92435	62	3.0	62	96	0	349	39	14	18	27	1.89
100176--100207	2	16.0	2	100	0	64	50	0	0	50	1.00
100294--100343	20	2.5	20	87	6	66	36	26	18	20	1.95
100518--100567	21	2.3	22	79	6	66	22	42	14	22	1.88
100906--100944	20	2.0	20	100	0	78	53	20	10	15	1.70
100950--101004	20	2.8	20	73	13	51	16	16	18	49	1.81
102326--102422	42	2.3	42	87	3	133	28	35	17	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102540--102580	21	2.0	21	85	9	57	17	14	34	34	1.90
102619--102719	42	2.4	42	96	0	193	21	9	32	35	1.87
102846--102887	12	3.5	12	83	6	50	23	0	7	69	1.13
103037--103128	21	4.4	21	78	5	96	27	35	16	20	1.94
103037--103128	42	2.2	42	86	3	123	27	35	16	20	1.94
108143--108270	20	6.5	19	70	14	64	35	14	22	27	1.93
108164--108272	40	2.7	40	81	4	139	34	13	22	29	1.92
109598--109788	58	3.3	57	83	5	197	40	13	12	34	1.82
115796--115838	22	1.9	23	90	4	70	48	2	0	48	1.14
116171--116204	13	2.6	13	85	0	50	52	0	2	44	1.16
116166--116248	26	3.1	26	72	16	71	48	0	6	45	1.27
117218--117373	73	2.2	69	79	6	163	38	17	17	26	1.92
117869--117924	18	3.0	20	80	17	66	76	0	0	23	0.78
117927--117975	22	2.2	22	85	7	64	79	2	8	10	1.01
117935--117979	22	2.1	21	91	4	72	82	2	4	11	0.91
119151--119211	24	2.5	24	82	17	72	65	0	1	32	1.02
119170--119230	28	2.1	28	81	6	68	62	0	0	37	0.96
119278--119638	38	9.4	37	79	15	369	44	4	3	47	1.39
119340--119371	2	16.5	2	93	6	57	46	0	0	53	1.00
119305--119412	52	2.1	51	90	8	175	43	3	1	50	1.30
119305--119411	50	2.1	50	91	6	173	43	3	1	50	1.30
119355--119638	38	7.7	37	85	10	402	44	4	3	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119278--119445	90	1.9	88	88	4	257	45	3	2	48	1.32
119353--119638	74	3.8	74	90	4	436	44	4	3	47	1.40
121871--121995	18	6.9	18	86	0	169	20	20	30	28	1.98
122622--123030	85	4.9	85	81	8	507	27	18	20	34	1.95
122678--123001	163	2.0	163	87	3	465	28	16	20	35	1.94
123091--123279	86	2.2	86	88	0	270	21	20	26	31	1.98
123893--123948	25	2.2	25	93	0	94	28	10	14	46	1.78
128130--128163	16	2.1	16	88	0	50	23	20	17	38	1.93
128571--128614	5	8.4	5	87	9	52	75	0	6	18	1.02
129901--130266	38	9.5	38	81	10	424	45	5	3	45	1.43
130168--130266	47	2.1	47	92	7	168	45	4	3	47	1.37
130504--130565	32	1.9	32	86	0	88	9	12	29	48	1.73
131369--131422	28	1.9	28	81	7	65	35	20	3	40	1.70
131348--131475	60	2.1	61	80	8	138	32	22	4	40	1.75
134044--134090	19	2.6	19	90	6	71	44	0	27	27	1.55
138013--138067	21	2.7	21	97	2	103	29	14	29	27	1.95
145950--146010	29	2.1	28	85	8	79	22	1	9	65	1.31

Tables:   1

The End!