Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008301.1 Hibiscus syriacus cultivar Beakdansim tig00110987_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3376434
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 18
Found at i:205 original size:50 final size:51
Alignment explanation
Indices: 1--302 Score: 352
Period size: 50 Copynumber: 5.9 Consensus size: 51
* * * *
1 CTTCAACAAACGTGTCTGCTCCCTATTCGTTCA-AGGAGTATAAGACTCAAAT
1 CTTCAACAAACTTGTCCGCTCCCTATTCCTTCAGA-GAGTATAGGACTC-AAT
* * * * * *
53 AATCTCAACAAACGTGTCTGCTCCCTATTCGTTCAGGGAGTATAGAACTCGAACAAT
1 -CT-TCAACAAACTTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACT----CAAT
110 CTTCAACAAACTTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAAT
1 CTTCAACAAACTTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAAT
*
161 CTTCAACGAACTTGTCCGCT-CCTATTCCTTCAGAGAGTATAGGACTCAAT
1 CTTCAACAAACTTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAAT
211 CTTCAAC-AACTTGTCCGCTCCCTATTCCTTC----AGTATAGGACTCAAT
1 CTTCAACAAACTTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAAT
* *
257 CTTCAACGAACTTGT-C-CTCCCTATTCATTCAGAGAGTATAGGACTC
1 CTTCAACAAACTTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTC
303 TTCAATGAAC
Statistics
Matches: 225, Mismatches: 12, Indels: 28
0.85 0.05 0.11
Matches are distributed among these distances:
45 13 0.06
46 23 0.10
47 7 0.03
49 24 0.11
50 48 0.21
51 23 0.10
53 1 0.00
54 41 0.18
55 40 0.18
56 1 0.00
57 3 0.01
58 1 0.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (51 bp):
CTTCAACAAACTTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCAAT
Found at i:1456 original size:26 final size:27
Alignment explanation
Indices: 1422--1547 Score: 91
Period size: 26 Copynumber: 4.6 Consensus size: 27
1412 TTGAACCCTC
*
1422 CTTTATTTCTCTTTTTTCA-TTTTTCT
1 CTTTTTTTCTCTTTTTTCATTTTTTCT
* *
1448 CTTTTTTTC-CATTTTCCATTTTTTCT
1 CTTTTTTTCTCTTTTTTCATTTTTTCT
1474 CTTTTTTT-TCGTTTTTTCCATCATTTTT-T
1 CTTTTTTTCTC-TTTTTT-CAT--TTTTTCT
* *
1503 CTTTTTCTCAT-TTTTTCTCTTTTATTTCTT
1 CTTTTTTTC-TCTTTTT-TCATTT-TTTC-T
*
1533 TTTTTTTTCTCTTTT
1 CTTTTTTTCTCTTTT
1548 ATTTCTTCTT
Statistics
Matches: 78, Mismatches: 9, Indels: 22
0.72 0.08 0.20
Matches are distributed among these distances:
25 7 0.09
26 24 0.31
27 6 0.08
28 6 0.08
29 16 0.21
30 18 0.23
31 1 0.01
ACGTcount: A:0.06, C:0.19, G:0.01, T:0.74
Consensus pattern (27 bp):
CTTTTTTTCTCTTTTTTCATTTTTTCT
Found at i:1460 original size:18 final size:18
Alignment explanation
Indices: 1427--1530 Score: 74
Period size: 18 Copynumber: 5.8 Consensus size: 18
1417 CCCTCCTTTA
1427 TTTCTC-TTTTTT-CATT
1 TTTCTCTTTTTTTCCATT
1443 TTTCTCTTTTTTTCCA-T
1 TTTCTCTTTTTTTCCATT
* *
1460 TTTC-CATTTTTTCTCTTT
1 TTTCTCTTTTTTTC-CATT
* *
1478 TTTTTCGTTTTTTCCATCAT
1 TTTCTCTTTTTTTCCAT--T
* *
1498 TTTTTCTTTTTCT-CATTT
1 TTTCTCTTTTTTTCCA-TT
1516 TTTCTCTTTTATTTC
1 TTTCTCTTTT-TTTC
1531 TTTTTTTTTT
Statistics
Matches: 69, Mismatches: 9, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
16 14 0.20
17 12 0.17
18 18 0.26
19 12 0.17
20 13 0.19
ACGTcount: A:0.07, C:0.20, G:0.01, T:0.72
Consensus pattern (18 bp):
TTTCTCTTTTTTTCCATT
Found at i:1482 original size:11 final size:11
Alignment explanation
Indices: 1466--1553 Score: 54
Period size: 11 Copynumber: 7.7 Consensus size: 11
1456 CCATTTTCCA
1466 TTTTTTCTCTT
1 TTTTTTCTCTT
1477 TTTTTTCGT-TT
1 TTTTTTC-TCTT
** *
1488 TTTCCATCATTTT
1 TTT-TTTC-TCTT
*
1501 TTCTTTTTCTCAT
1 TT-T-TTTCTCTT
1514 -TTTTTCTCTT
1 TTTTTTCTCTT
* *
1524 TTATTTCTTTT
1 TTTTTTCTCTT
1535 TTTTTTCTCTT
1 TTTTTTCTCTT
*
1546 TTATTTCT
1 TTTTTTCT
1554 TCTTCAAGCG
Statistics
Matches: 58, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
10 7 0.12
11 37 0.64
12 5 0.09
13 6 0.10
14 3 0.05
ACGTcount: A:0.06, C:0.17, G:0.01, T:0.76
Consensus pattern (11 bp):
TTTTTTCTCTT
Found at i:1541 original size:22 final size:22
Alignment explanation
Indices: 1513--1554 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
1503 CTTTTTCTCA
1513 TTTTTTCTCTTTTATTTCTTTT
1 TTTTTTCTCTTTTATTTCTTTT
1535 TTTTTTCTCTTTTATTTCTT
1 TTTTTTCTCTTTTATTTCTT
1555 CTTCAAGCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (22 bp):
TTTTTTCTCTTTTATTTCTTTT
Found at i:1557 original size:12 final size:11
Alignment explanation
Indices: 1506--1553 Score: 62
Period size: 11 Copynumber: 4.5 Consensus size: 11
1496 ATTTTTTCTT
*
1506 TTTCTCATTT-
1 TTTCTCTTTTA
1516 TTTCTCTTTTA
1 TTTCTCTTTTA
* *
1527 TTTCTTTTTTT
1 TTTCTCTTTTA
1538 TTTCTCTTTTA
1 TTTCTCTTTTA
1549 TTTCT
1 TTTCT
1554 TCTTCAAGCG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
10 9 0.28
11 23 0.72
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTCTCTTTTA
Found at i:7651 original size:22 final size:22
Alignment explanation
Indices: 7626--7667 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
7616 ATTTATCATG
7626 TAAAACATTTAACACTTATTCT
1 TAAAACATTTAACACTTATTCT
7648 TAAAACATTTAACACTTATT
1 TAAAACATTTAACACTTATT
7668 ATTCTCCCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (22 bp):
TAAAACATTTAACACTTATTCT
Found at i:9959 original size:22 final size:21
Alignment explanation
Indices: 9911--9971 Score: 79
Period size: 20 Copynumber: 2.9 Consensus size: 21
9901 ATTCCCCTGT
9911 GGGGGGAATCGGTTCCCTTCAA
1 GGGGGGAATCGGTTCCC-TCAA
*
9933 AGGGGGAATCGGTTCCCTC-A
1 GGGGGGAATCGGTTCCCTCAA
* *
9953 GGGGGGGATCGATTCCCTC
1 GGGGGGAATCGGTTCCCTC
9972 TACACCAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 17 0.49
21 2 0.06
22 16 0.46
ACGTcount: A:0.16, C:0.25, G:0.38, T:0.21
Consensus pattern (21 bp):
GGGGGGAATCGGTTCCCTCAA
Found at i:9971 original size:20 final size:20
Alignment explanation
Indices: 9891--9971 Score: 65
Period size: 20 Copynumber: 3.9 Consensus size: 20
9881 CAGAACCCCA
* *
9891 GGGGGTATCGATTCCC-CTG
1 GGGGGGATCGATTCCCTCAG
* *
9910 TGGGGGGAATCGGTTCCCTTCAAA
1 -GGGGGG-ATCGATTCCC-TC-AG
* *
9934 GGGGGAATCGGTTCCCTCAG
1 GGGGGGATCGATTCCCTCAG
9954 GGGGGGATCGATTCCCTC
1 GGGGGGATCGATTCCCTC
9972 TACACCAAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
20 22 0.45
21 11 0.22
22 10 0.20
23 6 0.12
ACGTcount: A:0.15, C:0.25, G:0.37, T:0.23
Consensus pattern (20 bp):
GGGGGGATCGATTCCCTCAG
Found at i:22866 original size:11 final size:11
Alignment explanation
Indices: 22852--22902 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
22842 TTTTACCTTA
*
22852 TTTTCTCTCTG
1 TTTTCTCTCTC
*
22863 TTTTTTCT-TC
1 TTTTCTCTCTC
*
22873 TTTTCTTTCTC
1 TTTTCTCTCTC
* *
22884 TTCTCTCTTTC
1 TTTTCTCTCTC
22895 TTTTCTCT
1 TTTTCTCT
22903 TTTTTTTATG
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
10 7 0.23
11 24 0.77
ACGTcount: A:0.00, C:0.27, G:0.02, T:0.71
Consensus pattern (11 bp):
TTTTCTCTCTC
Found at i:22869 original size:30 final size:30
Alignment explanation
Indices: 22835--22907 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 30
22825 TATTTCTTCG
*
22835 TTTTCTTTTTTACCTTATTTTCTCTCTGT-T
1 TTTTCTTTTTT-CCTTATCTTCTCTCTGTCT
* * *
22865 TTTTCTTCTTTTCTTTCTCTTCTCTCTTTCT
1 TTTTCTT-TTTTCCTTATCTTCTCTCTGTCT
22896 TTTCTCTTTTTT
1 TTT-TCTTTTTT
22908 TTATGTTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
30 20 0.56
31 12 0.33
32 4 0.11
ACGTcount: A:0.03, C:0.23, G:0.01, T:0.73
Consensus pattern (30 bp):
TTTTCTTTTTTCCTTATCTTCTCTCTGTCT
Found at i:22919 original size:19 final size:20
Alignment explanation
Indices: 22893--22948 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
22883 CTTCTCTCTT
* *
22893 TCTTTTCTCTTTTTTTTATG
1 TCTTTTCTCTTTTTTCTATA
22913 T-TTTTCTTCTTTTTTCTATA
1 TCTTTTC-TCTTTTTTCTATA
22933 TCTTTTCT-TTTTTTCT
1 TCTTTTCTCTTTTTTCT
22949 CTGTGTTGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 13 0.41
20 14 0.44
21 5 0.16
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.77
Consensus pattern (20 bp):
TCTTTTCTCTTTTTTCTATA
Found at i:26573 original size:20 final size:19
Alignment explanation
Indices: 26548--26586 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
26538 AGATTAGTAC
26548 TAAAAA-TTTCTAAATCTAAA
1 TAAAAAGTTT-TAAAT-TAAA
26568 TAAAAAGTTTTAAATTAAA
1 TAAAAAGTTTTAAATTAAA
26587 ACCTAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 11 0.61
21 3 0.17
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (19 bp):
TAAAAAGTTTTAAATTAAA
Found at i:26843 original size:29 final size:30
Alignment explanation
Indices: 26809--26873 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 30
26799 ACTAAAATGT
*
26809 AAATAATTAATAATTTT-AA-GCAAAAATTA
1 AAATAATCAA-AATTTTAAATGCAAAAATTA
* *
26838 AAATAA-CAACATTTTAAATGGAAAAATTA
1 AAATAATCAAAATTTTAAATGCAAAAATTA
26867 AAATAAT
1 AAATAAT
26874 AGTAATTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 5 0.17
28 4 0.13
29 21 0.70
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.31
Consensus pattern (30 bp):
AAATAATCAAAATTTTAAATGCAAAAATTA
Found at i:27412 original size:4 final size:4
Alignment explanation
Indices: 27403--27427 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
27393 TAATACTTTA
27403 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
27428 CTACCTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:27794 original size:2 final size:2
Alignment explanation
Indices: 27787--27822 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
27777 TTGAATTAAA
27787 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27823 GTGTGTGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37789 original size:11 final size:11
Alignment explanation
Indices: 37773--37797 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
37763 AATTTAGAGA
37773 AATTTAAATAT
1 AATTTAAATAT
37784 AATTTAAATAT
1 AATTTAAATAT
37795 AAT
1 AAT
37798 AACGATTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
AATTTAAATAT
Found at i:39099 original size:19 final size:19
Alignment explanation
Indices: 39056--39099 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
39046 GAATGCAAAA
*
39056 ATGGTATCGATATCATAAT
1 ATGGTATCGATACCATAAT
* * *
39075 AGGGTATCGGTACCATAGT
1 ATGGTATCGATACCATAAT
39094 ATGGTA
1 ATGGTA
39100 GTATCGATAC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (19 bp):
ATGGTATCGATACCATAAT
Found at i:39110 original size:22 final size:20
Alignment explanation
Indices: 39059--39129 Score: 72
Period size: 22 Copynumber: 3.5 Consensus size: 20
39049 TGCAAAAATG
* *
39059 GTATCGATATCATAATAGG-
1 GTATCGATACCATAGTAGGA
*
39078 GTATCGGTACCATAGTATGGTA
1 GTATCGATACCATAGTA-GG-A
* *
39100 GTATCGATACCATGGTAGGG
1 GTATCGATACCATAGTAGGA
39120 GTATCGATAC
1 GTATCGATAC
39130 TGAGGAGCCA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
19 14 0.33
20 12 0.28
21 2 0.05
22 15 0.35
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (20 bp):
GTATCGATACCATAGTAGGA
Found at i:39544 original size:55 final size:54
Alignment explanation
Indices: 39460--39619 Score: 232
Period size: 54 Copynumber: 2.9 Consensus size: 54
39450 ATGGCACTAA
39460 GTGTGCAAAAACCTAAGAAATT-TGTACTAAGTGTATAAATTTCTGTATGGGCACTTT
1 GTGTGC-AAAA-CTAAGAAATTCT-TACTAAGTGTAT-AATTTCTGTATGGGCACTTT
*
39517 GTGTGCAAAACTAAGAAATTCTTACTAAGTGTATAATTTCCGTATGGGCACTTT
1 GTGTGCAAAACTAAGAAATTCTTACTAAGTGTATAATTTCTGTATGGGCACTTT
* * *
39571 GTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAAGTTCTATATGGG
1 GTGTGCAAAACTAAGAAATTCTTACTAAGTGTAT-AATTTCTGTATGGG
39620 AAATATATGT
Statistics
Matches: 96, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
54 52 0.54
55 33 0.34
56 5 0.05
57 6 0.06
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (54 bp):
GTGTGCAAAACTAAGAAATTCTTACTAAGTGTATAATTTCTGTATGGGCACTTT
Found at i:40102 original size:68 final size:68
Alignment explanation
Indices: 39825--40084 Score: 439
Period size: 68 Copynumber: 3.8 Consensus size: 68
39815 AAATAAAAGA
* * * * * *
39825 TTTGAGGCCTAACTTAGCATTTGACATAAAGGTGTCAATTATGTCAATTAGATGAAAGGCTAAGT
1 TTTGAGGCCTAACTGAGCATTTGAAAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGGTAAGT
39890 GCC
66 GCC
*
39893 TTTGAGGCCTAACTGAGCATTTGAAAGAAAGGTGTCAGTTATGCCAGTTAGATGAAAGGGTAAGT
1 TTTGAGGCCTAACTGAGCATTTGAAAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGGTAAGT
39958 GCC
66 GCC
*
39961 TTTGAGGCCTAACTGAGCATTTGATAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGGTAAGT
1 TTTGAGGCCTAACTGAGCATTTGAAAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGGTAAGT
40026 GCC
66 GCC
*
40029 TTTGAGGCCTAACTGAGCATTTGAGAGAAAGGTGTCAATTATGCCAGTTAGATGAA
1 TTTGAGGCCTAACTGAGCATTTGAAAGAAAGGTGTCAATTATGCCAGTTAGATGAA
40085 CAGTTAAATA
Statistics
Matches: 182, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 182 1.00
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (68 bp):
TTTGAGGCCTAACTGAGCATTTGAAAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGGTAAGT
GCC
Found at i:40169 original size:81 final size:81
Alignment explanation
Indices: 40034--40875 Score: 1085
Period size: 81 Copynumber: 10.4 Consensus size: 81
40024 GTGCCTTTGA
* * *
40034 GGCCTAACTGAGCATTTGAG-AGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAATACCG
1 GGCCTAGCTGTGCATTTG-GCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCG
*
40098 TTGAGTAAAATATGAAT
65 TTGAGTAAAAGATGAAT
* * * * * * *
40115 GGCCTAGCTATGCATTTGGCAGAAATGTGTCAATTATGTCAATTAAATAAACAGTTAAATACCGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
40180 TGAGTAAAAGATGAAT
66 TGAGTAAAAGATGAAT
* * * * *
40196 GGCCTAGCTGTGAATTTGGCAGAAATGTGTCAATTTTGTCAGTTAGATGAATGGTTAAATACCGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
* *
40261 TGAGCAAAAGTTGAAT
66 TGAGTAAAAGATGAAT
* * * *
40277 GGCCTAGCTGTGCATTTGGGAGAAAAGTGTCAATTATGCCAGTTAAATGAACAGTTAAATACCGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
40342 TGAGTAAAAGATGAAT
66 TGAGTAAAAGATGAAT
* * * *
40358 GGCCTAGCTGTGCATTTGGTAGAAAGGTGTCAATTATGCCAATTAGATGAACGGTTAAATGCCAT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
*
40423 TGAGTAAAAAATGAAT
66 TGAGTAAAAGATGAAT
* * ** * *
40439 GGCTTAGTTGTGCATTTGGCAGAAATATGCCAATTATGCCAGTTAGATGAACGATTAAATACCGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
* *
40504 TAAGTAAAAGATAAAT
66 TGAGTAAAAGATGAAT
* * * * *
40520 GGCCTAGCTGTGCATTTTGCAGAAAGGTGTCAATTATGCTAGTTATATGAACGGTTAGATACCTT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
*
40585 TGAGTAAACGATGAAT
66 TGAGTAAAAGATGAAT
* *
40601 GGCCTAGCTGTGCATTT-GTAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATATCGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
*
40665 TGAGTAAAATATGAAT
66 TGAGTAAAAGATGAAT
* * * * * *
40681 GGCATAGATGTGCATTTGGTAGAAATGTGTCAATTATGCCAGTTAGATGAACGATTAAATACCAT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
40746 TGAGTAAAAGATGAAT
66 TGAGTAAAAGATGAAT
** * * * * **
40762 ATCCTAGATGTGCATTTGGCAGAAAGGTGTCAATTATGTCAGTTAGATGAATGGTTAAACATTGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
*
40827 TGAGTAAAAGATTAAT
66 TGAGTAAAAGATGAAT
** * * *
40843 GTACTAGCTATGCATTTGACAGAAAAGTGTCAA
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAA
40876 ATAGATAAAA
Statistics
Matches: 661, Mismatches: 98, Indels: 4
0.87 0.13 0.01
Matches are distributed among these distances:
80 71 0.11
81 590 0.89
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.30
Consensus pattern (81 bp):
GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
TGAGTAAAAGATGAAT
Found at i:45107 original size:287 final size:287
Alignment explanation
Indices: 44587--45150 Score: 659
Period size: 287 Copynumber: 2.0 Consensus size: 287
44577 TAATTGTATG
* * *
44587 GAGTTTGAAGTAAATTACAAAAAATAAAAATAATTATGGGTTACTTTAGGATTAAAAAATAAATT
1 GAGTTTGAAGTAAATTACAAAAAATAAAAATAATTATGGGTCAATTTAGGATGAAAAAATAAATT
* * * * * *
44652 TAATGACTAAATTAAAAAACAGGAAACTATGAAATGAAAATTAAATATATTAAACTACACACTAT
66 TAAGGACTAAATTAAAAAACAGGAAACTATCAAATGAAAATTAAATAAATTAAACAACACACAAG
* * * * * * *
44717 GAGCAAATTGAAACAATTGTAAAATGTAAAGCTAAAATCAACCTAAAAACGGACTAAATTGTATT
131 GAGCAAACTGAAACAATTGAAAAATATAAAGATAAAATCAACATAAAAACGGAATAAATTGCATT
* * * *
44782 CATTTGCAAAGTTAGTGAACAAAATTTTATAAGGTTTGGAGATTATGATATAATTTATAGGGTTG
196 CATTTGAAAAGTTAGTGAACAAAAGTTAATAAGGTTTGGAAATTATGATATAATTTATAGGGTTG
44847 GAAATGAA-TTTAATGATGCGGTTTATA
261 GAAATGAAGTTT-ATGATGCGGTTTATA
* * * * **
44874 GAGTTTGCAGTAAATTACAAAAAATATAAATAATTATGTGTCAATTTAGGATGAAAATATATTTT
1 GAGTTTGAAGTAAATTACAAAAAATAAAAATAATTATGGGTCAATTTAGGATGAAAAAATAAATT
* * * * *
44939 TAAGGACTAAATTAAAAAATATGAAATTA-CAAGCT-AAATTTTAAATAAATTAAACAACACA-A
66 TAAGGACTAAATTAAAAAACAGGAAACTATCAA-ATGAAA-ATTAAATAAATTAAACAACACACA
** * * * * * *
45001 AGGGATTAAACTGAAACTATTGAAAAATATAAAGATAAAATTAATATCATAATGGAATAAATTGC
129 A-GGAGCAAACTGAAACAATTGAAAAATATAAAGATAAAATCAACATAAAAACGGAATAAATTGC
* ** **
45066 ATTCATTTGAAAAGTTGGTGAACAAAAGTTAATGGGGTTTGGAAATTATTCTATAATTTATAGGG
193 ATTCATTTGAAAAGTTAGTGAACAAAAGTTAATAAGGTTTGGAAATTATGATATAATTTATAGGG
*
45131 TTTGAAATGAAGTTTATGAT
258 TTGGAAATGAAGTTTATGAT
45151 ATAAATTAAG
Statistics
Matches: 228, Mismatches: 45, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
286 6 0.03
287 219 0.96
288 3 0.01
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.32
Consensus pattern (287 bp):
GAGTTTGAAGTAAATTACAAAAAATAAAAATAATTATGGGTCAATTTAGGATGAAAAAATAAATT
TAAGGACTAAATTAAAAAACAGGAAACTATCAAATGAAAATTAAATAAATTAAACAACACACAAG
GAGCAAACTGAAACAATTGAAAAATATAAAGATAAAATCAACATAAAAACGGAATAAATTGCATT
CATTTGAAAAGTTAGTGAACAAAAGTTAATAAGGTTTGGAAATTATGATATAATTTATAGGGTTG
GAAATGAAGTTTATGATGCGGTTTATA
Found at i:45542 original size:15 final size:14
Alignment explanation
Indices: 45500--45557 Score: 66
Period size: 15 Copynumber: 4.1 Consensus size: 14
45490 TAATTTAGAC
45500 ATACATACATATAT
1 ATACATACATATAT
*
45514 -TA-ATAAATTATAT
1 ATACATACA-TATAT
45527 ATACATACATAGTAT
1 ATACATACATA-TAT
45542 ATATCATACATATAT
1 ATA-CATACATATAT
45557 A
1 A
45558 ACACACACAT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
12 4 0.11
13 7 0.19
14 4 0.11
15 14 0.38
16 8 0.22
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (14 bp):
ATACATACATATAT
Found at i:45572 original size:81 final size:82
Alignment explanation
Indices: 45425--45587 Score: 204
Period size: 81 Copynumber: 2.0 Consensus size: 82
45415 ACATGCATTA
* * * * *
45425 ATATATAATAAATTATATATACATGCATATCATATCATATCATACATACATGAGATATACACTAA
1 ATATATAATAAATTATATATACATACATA-CATATCATATCATACATACATAACACACACACTAA
*
45490 TAATTTAGACATACATAC
65 TAAATTAGACATACATAC
* * *
45508 ATATATTAATAAATTATATATACATACATA-GTAT-ATATCATACATATATAACACACACATTAA
1 ATATA-TAATAAATTATATATACATACATACATATCATATCATACATACATAACACACACACTAA
*
45571 TAAATTATACATACATA
65 TAAATTAGACATACATA
45588 TATACATACA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
81 38 0.55
82 3 0.04
83 5 0.07
84 23 0.33
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.34
Consensus pattern (82 bp):
ATATATAATAAATTATATATACATACATACATATCATATCATACATACATAACACACACACTAAT
AAATTAGACATACATAC
Found at i:46876 original size:13 final size:13
Alignment explanation
Indices: 46855--46918 Score: 76
Period size: 13 Copynumber: 4.8 Consensus size: 13
46845 TAACTTTTTA
46855 AAAAAATAAAAAC
1 AAAAAATAAAAAC
*
46868 AATAAATAAAAAC
1 AAAAAATAAAAAC
* *
46881 AAACAA-ACAAAC
1 AAAAAATAAAAAC
46893 AAAAAATCATAAAAC
1 AAAAAAT-A-AAAAC
46908 AAAAAATAAAA
1 AAAAAATAAAA
46919 TAAACCTAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
12 10 0.24
13 19 0.45
14 2 0.05
15 11 0.26
ACGTcount: A:0.80, C:0.11, G:0.00, T:0.09
Consensus pattern (13 bp):
AAAAAATAAAAAC
Found at i:48400 original size:91 final size:91
Alignment explanation
Indices: 48292--48546 Score: 368
Period size: 91 Copynumber: 2.8 Consensus size: 91
48282 GATGGAATTA
*
48292 CCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTTGTTTGATGAGTTCTTCTCATT
1 CCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTTGTTGGATGAGTTCTTCTCATT
*
48357 ATGAACTCTCTACTAGAAATGTTGAG
66 ATGAACTCTCCACTAGAAATGTTGAG
* * * *
48383 CTAAGGTTGAACAAGTTCTTCTCATTATTAACTTCTTCTCCCTCGTTGGATGAGTTATTCTCATT
1 CCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTTGTTGGATGAGTTCTTCTCATT
*
48448 ATGAACTCTCCACTGGAAATGTTGAG
66 ATGAACTCTCCACTAGAAATGTTGAG
* * * * *
48474 CCAAGGTTTAACAAGTTCTTCTCATTATGAA-ATCTTCACTTCTCTGTTCGGACGAGTTCTTCTC
1 CCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTC-CCT-TGTT-GGATGAGTTCTTCTC
48538 ATTATGAAC
63 ATTATGAAC
48547 CCTTCCATTG
Statistics
Matches: 145, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
90 6 0.04
91 114 0.79
92 3 0.02
93 22 0.15
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (91 bp):
CCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTTGTTGGATGAGTTCTTCTCATT
ATGAACTCTCCACTAGAAATGTTGAG
Found at i:48843 original size:136 final size:134
Alignment explanation
Indices: 48596--48949 Score: 442
Period size: 136 Copynumber: 2.6 Consensus size: 134
48586 TTGAGCTAAG
* * *
48596 GTTCAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTC-ATCGGAGGAGTTATTCTCATTATGA
1 GTTCAACAAGTTCTTCTCATTATAAACTT-TTCTCCCTCTATCGGATGAGTTCTTCTCATTATGA
** * * * *
48660 ACTCTCCATCAGAAACGTCAGTCCCTCAAGTGAGGTGTTACTGATTCGAAGTG-TTGTGAATCAA
65 ACTCTCCATTTGAAATGTCAATCCCTCAAGCGAGGCGTTACTGATTCGAAGTGCTT-TGAATCAA
48724 GCAATA
129 GCAATA
* *
48730 GTTCGAACAAGCTCTTCTCATTATAAACTTATTCTCCCTCTGTCGGATGAGTTCTTCTCATTATG
1 GTTC-AACAAGTTCTTCTCATTATAAACTT-TTCTCCCTCTATCGGATGAGTTCTTCTCATTATG
* *
48795 AACTCTCCATTTGAAATGTCAATCCCTCAAGCGAGGCGTTGCTGATTCGAAGTGCTTTGAATCGA
64 AACTCTCCATTTGAAATGTCAATCCCTCAAGCGAGGCGTTACTGATTCGAAGTGCTTTGAATCAA
***
48860 TTGATA
129 GCAATA
* * * **
48866 GGTCAAACAAGTTCTTCTCATTACAAACTTTCTCTCCCTCTATCAGATGAGCACTTCTCATTATG
1 GTTC-AACAAGTTCTTCTCATTATAAACTTT-TCTCCCTCTATCGGATGAGTTCTTCTCATTATG
*
48931 AACTCTCCGTTTGAAATGT
64 AACTCTCCATTTGAAATGT
48950 TGATCGGTTT
Statistics
Matches: 190, Mismatches: 26, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
134 4 0.02
135 33 0.17
136 151 0.79
137 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.34
Consensus pattern (134 bp):
GTTCAACAAGTTCTTCTCATTATAAACTTTTCTCCCTCTATCGGATGAGTTCTTCTCATTATGAA
CTCTCCATTTGAAATGTCAATCCCTCAAGCGAGGCGTTACTGATTCGAAGTGCTTTGAATCAAGC
AATA
Found at i:49573 original size:9 final size:9
Alignment explanation
Indices: 49562--49655 Score: 58
Period size: 9 Copynumber: 10.9 Consensus size: 9
49552 TTTGGTCGAT
*
49562 TTTCTTTCTT
1 TTTCTTT-TC
49572 TTTCTTCTTC
1 TTTCTT-TTC
49582 -TTCTTTTC
1 TTTCTTTTC
49590 TTT-TTCTT-
1 TTTCTT-TTC
*
49598 TTTCTTTTT
1 TTTCTTTTC
*
49607 TTTCTATTC
1 TTTCTTTTC
*
49616 TTT-TTTCC
1 TTTCTTTTC
*
49624 CTT-TTTTC
1 TTTCTTTTC
49632 -TTC-TTTC
1 TTTCTTTTC
49639 TTTCTTTTC
1 TTTCTTTTC
*
49648 TCTCTTTT
1 TTTCTTTT
49656 TTATGTTTTT
Statistics
Matches: 68, Mismatches: 8, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
7 6 0.09
8 22 0.32
9 32 0.47
10 7 0.10
11 1 0.01
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTCTTTTC
Found at i:49577 original size:6 final size:6
Alignment explanation
Indices: 49566--49620 Score: 56
Period size: 6 Copynumber: 8.5 Consensus size: 6
49556 GTCGATTTTC
* *
49566 TTTCTT TTTCTT CTTCTTCT TTTCTT TTTCTT TTTCTT TTTTTT CTATTCTT
1 TTTCTT TTTCTT TTTC-T-T TTTCTT TTTCTT TTTCTT TTTCTT -T-TTCTT
49618 TTT
1 TTT
49621 TCCCTTTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
6 29 0.71
7 4 0.10
8 8 0.20
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTCTT
Found at i:49591 original size:20 final size:19
Alignment explanation
Indices: 49566--49657 Score: 67
Period size: 19 Copynumber: 5.2 Consensus size: 19
49556 GTCGATTTTC
49566 TTTCTTTTTCTTCTTCTTCT
1 TTTCTTTTTCTTCTTCTT-T
*
49586 TTTCTTTTTC-T-TT-TTC
1 TTTCTTTTTCTTCTTCTTT
*
49602 TTT-TTTTTC-TATTCTTT
1 TTTCTTTTTCTTCTTCTTT
*
49619 TTTCCCTTTT-TTCTTCTTT
1 TTT-CTTTTTCTTCTTCTTT
49638 CTTTC-TTTTC-TC-TCTTT
1 -TTTCTTTTTCTTCTTCTTT
49655 TTT
1 TTT
49658 ATGTTTTTTA
Statistics
Matches: 61, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
15 7 0.11
16 8 0.13
17 12 0.20
18 8 0.13
19 13 0.21
20 13 0.21
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTCTTTTTCTTCTTCTTT
Found at i:49599 original size:26 final size:26
Alignment explanation
Indices: 49566--49655 Score: 85
Period size: 26 Copynumber: 3.3 Consensus size: 26
49556 GTCGATTTTC
49566 TTTCTTTTTCTTCTTCTTCTTTTCTT
1 TTTCTTTTTCTTCTTCTTCTTTTCTT
* * *
49592 TTTCTTTTTCTTTTTTTTCTATTCTTT
1 TTTCTTTTTCTTCTTCTTCTTTTC-TT
*
49619 TTTCCCTTTT-TTCTTCTT-TCTTTCTT
1 TTT-CTTTTTCTTCTTCTTCT-TTTCTT
49645 TTCTCTCTTTT
1 TT-TCT-TTTT
49656 TTATGTTTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
26 27 0.53
27 19 0.37
28 5 0.10
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.77
Consensus pattern (26 bp):
TTTCTTTTTCTTCTTCTTCTTTTCTT
Found at i:49656 original size:26 final size:26
Alignment explanation
Indices: 49561--49656 Score: 79
Period size: 27 Copynumber: 3.5 Consensus size: 26
49551 ATTTGGTCGA
*
49561 TTTTCTTTCTTTTTCTTCTTCTTCTTTTC
1 TTTTCTCTCTTTTTCTTC-T-TTC-TTTC
* *
49590 TTTT-TCT-TTTTCTTTTTTTTCTATTC
1 TTTTCTCTCTTTT-TCTTCTTTCT-TTC
* *
49616 TTTTTTCCCTTTTTTCTTCTTTCTTTC
1 TTTTCTCTC-TTTTTCTTCTTTCTTTC
49643 TTTTCTCTCTTTTT
1 TTTTCTCTCTTTTT
49657 TATGTTTTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
25 1 0.02
26 15 0.28
27 17 0.31
28 13 0.24
29 8 0.15
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.77
Consensus pattern (26 bp):
TTTTCTCTCTTTTTCTTCTTTCTTTC
Found at i:49666 original size:37 final size:36
Alignment explanation
Indices: 49561--49657 Score: 103
Period size: 36 Copynumber: 2.7 Consensus size: 36
49551 ATTTGGTCGA
*
49561 TTTTCTTTCTTTTTCTTCTTCTTCTTTT--C-TTTTTCT
1 TTTTCTTTC-TTTTCTAC-TCTT-TTTTCCCTTTTTTCT
* *
49597 TTTTCTTTTTTTTCTATTCTTTTTTCCCTTTTTTCT
1 TTTTCTTTCTTTTCTACTCTTTTTTCCCTTTTTTCT
49633 TCTTTCTTTCTTTTCT-CTCTTTTTT
1 T-TTTCTTTCTTTTCTACTCTTTTTT
49658 ATGTTTTTTA
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
33 4 0.08
34 4 0.08
35 7 0.13
36 24 0.46
37 13 0.25
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.77
Consensus pattern (36 bp):
TTTTCTTTCTTTTCTACTCTTTTTTCCCTTTTTTCT
Found at i:53399 original size:17 final size:16
Alignment explanation
Indices: 53375--53435 Score: 61
Period size: 17 Copynumber: 3.7 Consensus size: 16
53365 CTTAATTTTT
53375 TAAAAAATAAAAACAA
1 TAAAAAATAAAAACAA
53391 TAAATAAATAAAAACAA
1 TAAA-AAATAAAAACAA
* *
53408 -AAAAATTATAAAATAA
1 TAAAAAATA-AAAACAA
*
53424 AAATAAAATAAA
1 TAA-AAAATAAA
53436 CCTAAAATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
15 4 0.11
16 13 0.34
17 16 0.42
18 5 0.13
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (16 bp):
TAAAAAATAAAAACAA
Found at i:53409 original size:22 final size:22
Alignment explanation
Indices: 53377--53431 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
53367 TAATTTTTTA
*
53377 AAAAATAAAAACAATAA-ATAAAT
1 AAAAACAAAAA-AATAATA-AAAT
*
53400 AAAAACAAAAAAATTATAAAAT
1 AAAAACAAAAAAATAATAAAAT
*
53422 AAAAATAAAA
1 AAAAACAAAA
53432 TAAACCTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.61
23 11 0.39
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (22 bp):
AAAAACAAAAAAATAATAAAAT
Found at i:53444 original size:11 final size:11
Alignment explanation
Indices: 53377--53435 Score: 50
Period size: 11 Copynumber: 5.3 Consensus size: 11
53367 TAATTTTTTA
*
53377 AAAAATAAAAAC
1 AAAAAT-AAAAT
53389 AATAAAT-AAAT
1 AA-AAATAAAAT
*
53400 AAAAACAAAA-
1 AAAAATAAAAT
*
53410 AAATTATAAAAT
1 AAA-AATAAAAT
53422 AAAAATAAAAT
1 AAAAATAAAAT
53433 AAA
1 AAA
53436 CCTAAAATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
10 6 0.16
11 23 0.61
12 5 0.13
13 4 0.11
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:53540 original size:51 final size:51
Alignment explanation
Indices: 53482--53588 Score: 128
Period size: 51 Copynumber: 2.1 Consensus size: 51
53472 AACAATTACT
* * *
53482 AAAATGCAAGAAAATAAAAGT-TAGTAGTTAAATAAGAAA-TAAATAGTGACC
1 AAAATGCAA-AAAATAAAA-TATAGTAGATAAATAAGAAATTAAAAAGTGACA
* *
53533 AAAATGCAAAAATTAAAATAATAGTAGATAAATCAGAAATTAAAAAGTGACA
1 AAAATGCAAAAAATAAAAT-ATAGTAGATAAATAAGAAATTAAAAAGTGACA
53585 AAAA
1 AAAA
53589 GGAATAAATT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
49 1 0.02
50 8 0.17
51 25 0.52
52 14 0.29
ACGTcount: A:0.61, C:0.06, G:0.13, T:0.21
Consensus pattern (51 bp):
AAAATGCAAAAAATAAAATATAGTAGATAAATAAGAAATTAAAAAGTGACA
Found at i:56259 original size:22 final size:22
Alignment explanation
Indices: 56218--56260 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
56208 GTACAACTAT
*
56218 TTAGTAAAATTTAATTTATTAG
1 TTAGTAAAATTTAATATATTAG
56240 TTAGTAAAATATT-ATATATTA
1 TTAGTAAAAT-TTAATATATTA
56261 ATACTTGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (22 bp):
TTAGTAAAATTTAATATATTAG
Found at i:58776 original size:54 final size:54
Alignment explanation
Indices: 58718--58836 Score: 139
Period size: 54 Copynumber: 2.2 Consensus size: 54
58708 TGATTTTGTG
* * * * *
58718 TGATTTGATTTCAATGTCATTTTGAGATTTGTTTAAGATTTTTTTGAGTTTATA
1 TGATTTGATTTCAATATCACTTTAAGATTTGTTTAAGATTTATTTAAGTTTATA
** * **
58772 TGATTTGATTTCTGTATTACTTTAAGATTTGTTTGTGATTTATTTAAGTTTATA
1 TGATTTGATTTCAATATCACTTTAAGATTTGTTTAAGATTTATTTAAGTTTATA
*
58826 TGATTTTATTT
1 TGATTTGATTT
58837 TACGTTTCTT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.24, C:0.03, G:0.15, T:0.58
Consensus pattern (54 bp):
TGATTTGATTTCAATATCACTTTAAGATTTGTTTAAGATTTATTTAAGTTTATA
Found at i:63772 original size:25 final size:25
Alignment explanation
Indices: 63744--63791 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
63734 TTACATAATA
*
63744 TAATTTAACCTTTATCTTTGATATC
1 TAATTTAACATTTATCTTTGATATC
*
63769 TAATTTAATATTTATCTTTGATA
1 TAATTTAACATTTATCTTTGATA
63792 CAACTAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.54
Consensus pattern (25 bp):
TAATTTAACATTTATCTTTGATATC
Found at i:73099 original size:27 final size:27
Alignment explanation
Indices: 73051--73117 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
73041 CCACCTTTCA
**
73051 AGGTGATGCATAATATTCCATCATT-T
1 AGGTGATGCATAGCATTCCATCATTCT
*
73077 GAGGTGATGCATAGCATTTCATCATTCT
1 -AGGTGATGCATAGCATTCCATCATTCT
*
73105 AGGTGATGTATAG
1 AGGTGATGCATAG
73118 GTAGCTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.36
Consensus pattern (27 bp):
AGGTGATGCATAGCATTCCATCATTCT
Found at i:74079 original size:10 final size:10
Alignment explanation
Indices: 74064--74088 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
74054 AAAATCAGTT
74064 GTCTTTTAGA
1 GTCTTTTAGA
74074 GTCTTTTAGA
1 GTCTTTTAGA
74084 GTCTT
1 GTCTT
74089 CCTTTCCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.12, G:0.20, T:0.52
Consensus pattern (10 bp):
GTCTTTTAGA
Found at i:75389 original size:18 final size:19
Alignment explanation
Indices: 75354--75390 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
75344 CACGGAATGT
75354 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
75374 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
75391 GAATTACTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:80492 original size:138 final size:138
Alignment explanation
Indices: 80244--82116 Score: 2600
Period size: 138 Copynumber: 13.6 Consensus size: 138
80234 TACTATTCAC
* * * * * * * * *
80244 GTGAAAGCACGTTCCCGGGGTCACGCCTTCCATTGTTTTGTCAGATAATAAGTTATCATTGTCCT
1 GTGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
* *
80309 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATTTTTTAGGGGACTTG
66 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
*
80374 GAAAAGTG
131 GCAAAGTG
* ** * * * * * * *
80382 GTGAAGGTGCGTTCCCGGGGGTTCTCCTTCCATTACTTTGTCATAGAATATGTTATTACTGCCAT
1 GTGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
* * * * *
80447 ATTATGTCATTCATGTCCCCCGGGGGACTATTCATGTAAGTACCTATTATTTTTTAGGGGACTTG
66 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
*
80512 GCAAATTG
131 GCAAAGTG
* * *
80520 GTGAAAGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTACCTT
1 GTGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
* *
80585 ATTATGTCACTCATATCCCCCGGGAAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
66 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
*
80650 GTAAAGTG
131 GCAAAGTG
* * *
80658 GTGAAGGCGCGTTCTCGGGGGTGCGCCTTTCATTATTTTTTCAGAGAATATGTTATCATTGCCCT
1 GTGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
* * * *
80723 ACTATTTCACTCATGTCCCCCGAGGAACTATTCATGTCAATACCTATTATGTTTGAGGGGACTTG
66 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
80788 GCAAAGTG
131 GCAAAGTG
* * * * * * *
80796 GTGAAAGCGCGTTTCTGGGGG-GCACCTTTTATTATTTTTTGAGAG-A-ATGTTATCATTGCCCT
1 GTGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
80858 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
66 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
*
80923 ACAAAGTG
131 GCAAAGTG
* * * * * *
80931 GTGAAGGCACGTTCTCGGGGGGGGGGTCCTTCCATTATTTTATCAGAGAATATGTTATCATTGCC
1 GTGAAGGCGCGTTC-CCGGGGGCGCG-CCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCC
* *
80996 CAATTATGTCACTCATGTCCCCCGGGGAACTATTTATGTCAGTACCTATTATGTTTGAGGGG-CT
64 CTATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACT
81060 TGGCAAAGTG
129 TGGCAAAGTG
* * * * * * *
81070 GTGAAGGTGCGTTCCCAGGTGCGCGCCTTCCATTATTTTGTCAGAGAATATGTCATAATTTCCCT
1 GTGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
* * * * *
81135 ATTTTGTCAATCATGTCCCCCGGGAAACTATTCATATCAGTACCTATTATGTTTGAGGAGACTTG
66 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
81200 GCAAAGTG
131 GCAAAGTG
* * * * *
81208 GTGAAAGCGCGTTTCTGGGGGCACGCCTTTCATTATTTTGTAAGAGAATATGTTATCATTGCCCT
1 GTGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
** *
81273 ATTATGTCACTCATGTCCCCTAGGGAACTATTCATATCAGTACCTATTATGTTTGAGGGGACTTG
66 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
*
81338 GCAAAGCG
131 GCAAAGTG
* **
81346 GTGAAGGCGAGTTCCTAGGGGCGCGCC-TTCTATTATTTTGTCAGAGAATATGTTATCATTGCCC
1 GTGAAGGCGCGTTCCCGGGGGCGCGCCTTTC-ATTATTTTGTCAGAGAATATGTTATCATTGCCC
* * **
81410 TACTATGTCACTCAAGTCCCCCAAGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTT
65 TATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTT
81475 GGCAAAGTG
130 GGCAAAGTG
* * *
81484 GTGAAAGCGCGTTTCC-GGGGTGCGCCTTTCATTATTTTGTCA-ATGAATATGTTATCATTGCCC
1 GTGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGA-GAATATGTTATCATTGCCC
*
81547 TATTATGTCACTCATGTCCCCCGGGGAACTATTTATGT-ATGTACCTATTATGTTTGAGGGGACT
65 TATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCA-GTACCTATTATGTTTGAGGGGACT
*
81611 TGGAAAAGTG
129 TGGCAAAGTG
* * ** * *
81621 GTGAATGCGCATTCCTAGGGGCGCGCCTTTCATTATTTTGTCAGAGAAGATGTTATCATTACCCT
1 GTGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
* *
81686 ATTAAGTCACTCATGTTCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
66 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
81751 GCAAAGTG
131 GCAAAGTG
* * * *
81759 GTGAAGGCGAGTTCCC-GGGG-GCG-CTTCCATAATTTT-TTAGAGAATATGTTATCATTGCCCT
1 GTGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
81820 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
66 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
81885 GCAAAGTG
131 GCAAAGTG
* * * *
81893 GTTAAAGCGCGTTCCCGGGGTCGCACCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
1 GTGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
81958 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
66 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
82023 GCAAAGTG
131 GCAAAGTG
* ** * * *
82031 GTGAAGGCGCGTTCCCAGGGGCGTTCCTTCCATTATTTAGTCAGAGAATATGTTATCATTTCCCT
1 GTGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
*
82096 ATTATGTCACTCATGCCCCCC
66 ATTATGTCACTCATGTCCCCC
82117 AGAGATGCAG
Statistics
Matches: 1538, Mismatches: 180, Indels: 34
0.88 0.10 0.02
Matches are distributed among these distances:
134 106 0.07
135 109 0.07
136 14 0.01
137 247 0.16
138 962 0.63
139 26 0.02
140 74 0.05
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.34
Consensus pattern (138 bp):
GTGAAGGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
GCAAAGTG
Found at i:81051 original size:275 final size:275
Alignment explanation
Indices: 80244--82116 Score: 2599
Period size: 275 Copynumber: 6.8 Consensus size: 275
80234 TACTATTCAC
* * * * * * * *
80244 GTGAAAGCACGTTCCCGGGGTCACGCCTTCCATTGTTTTGTCAGATAATAAGTTATCATTGTCCT
1 GTGAAAGCGCGTTCCTGGGG-CGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
* *
80309 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATTTTTTAGGGGACTTG
65 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
* * * * * *
80374 GAAAAGTGGTGAAGGTGCGTTC-CCGGGGGTTCTCCTTCCATTACTTTGTCATAGAATATGTTAT
130 GCAAAGTGGTGAAGGCGCGTTCTCCGGGGG-GCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
* * * * * * * *
80438 TACTGCCATATTATGTCATTCATGTCCCCCGGGGGACTATTCATGTAAGTACCTATTATTTTTTA
194 CATTGCCCTATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGA
*
80503 GGGGACTTGGCAAATTG
259 GGGGACTTGGCAAAGTG
* * *
80520 GTGAAAGCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTACCTT
1 GTGAAAGCGCGTT-CCTGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
* *
80585 ATTATGTCACTCATATCCCCCGGGAAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
65 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
* * *
80650 GTAAAGTGGTGAAGGCGCGTTCT-CGGGGGTGCGCCTTTCATTATTTTTTCAGAGAATATGTTAT
130 GCAAAGTGGTGAAGGCGCGTTCTCCGGGGG-GCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
* * * *
80714 CATTGCCCTACTATTTCACTCATGTCCCCCGAGGAACTATTCATGTCAATACCTATTATGTTTGA
194 CATTGCCCTATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGA
80779 GGGGACTTGGCAAAGTG
259 GGGGACTTGGCAAAGTG
* * * * * *
80796 GTGAAAGCGCGTTTCTGGGGGGCACCTTTTATTATTTTTTGAGAG-A-ATGTTATCATTGCCCTA
1 GTGAAAGCGCGTTCCTGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
*
80859 TTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGA
66 TTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGG
* * * *
80924 CAAAGTGGTGAAGGCACGTTCTCGGGGGGGGGGTCCTTCCATTATTTTATCAGAGAATATGTTAT
131 CAAAGTGGTGAAGGCGCGTTCTC-CGGGGGGCG-CCTTCCATTATTTTGTCAGAGAATATGTTAT
* *
80989 CATTGCCCAATTATGTCACTCATGTCCCCCGGGGAACTATTTATGTCAGTACCTATTATGTTTGA
194 CATTGCCCTATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGA
81054 GGGG-CTTGGCAAAGTG
259 GGGGACTTGGCAAAGTG
* * * * * * * *
81070 GTGAAGGTGCGTTCCCAGGTGCGCGCCTTCCATTATTTTGTCAGAGAATATGTCATAATTTCCCT
1 GTGAAAGCGCGTT-CCTGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
* * * * *
81135 ATTTTGTCAATCATGTCCCCCGGGAAACTATTCATATCAGTACCTATTATGTTTGAGGAGACTTG
65 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
* * * * *
81200 GCAAAGTGGTGAAAGCGCGTT-TCTGGGGGCACGCCTTTCATTATTTTGTAAGAGAATATGTTAT
130 GCAAAGTGGTGAAGGCGCGTTCTCCGGGGG-GCGCCTTCCATTATTTTGTCAGAGAATATGTTAT
** *
81264 CATTGCCCTATTATGTCACTCATGTCCCCTAGGGAACTATTCATATCAGTACCTATTATGTTTGA
194 CATTGCCCTATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGA
*
81329 GGGGACTTGGCAAAGCG
259 GGGGACTTGGCAAAGTG
* *
81346 GTGAAGGCGAGTTCCTAGGGGCGCGCC-TTCTATTATTTTGTCAGAGAATATGTTATCATTGCCC
1 GTGAAAGCGCGTTCCT-GGGGCGCGCCTTTC-ATTATTTTGTCAGAGAATATGTTATCATTGCCC
* * **
81410 TACTATGTCACTCAAGTCCCCCAAGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTT
64 TATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTT
* * *
81475 GGCAAAGTGGTGAAAGCGCGTT-TCCGGGGTGCGCCTTTCATTATTTTGTCA-ATGAATATGTTA
129 GGCAAAGTGGTGAAGGCGCGTTCTCCGGGGGGCGCCTTCCATTATTTTGTCAGA-GAATATGTTA
*
81538 TCATTGCCCTATTATGTCACTCATGTCCCCCGGGGAACTATTTATGT-ATGTACCTATTATGTTT
193 TCATTGCCCTATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCA-GTACCTATTATGTTT
*
81602 GAGGGGACTTGGAAAAGTG
257 GAGGGGACTTGGCAAAGTG
* * * *
81621 GTGAATGCGCATTCCTAGGGGCGCGCCTTTCATTATTTTGTCAGAGAAGATGTTATCATTACCCT
1 GTGAAAGCGCGTTCCT-GGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
* *
81686 ATTAAGTCACTCATGTTCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
65 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
* * *
81751 GCAAAGTGGTGAAGGCGAGTTC-CC-GGGGGCG-CTTCCATAATTTT-TTAGAGAATATGTTATC
130 GCAAAGTGGTGAAGGCGCGTTCTCCGGGGGGCGCCTTCCATTATTTTGTCAGAGAATATGTTATC
81812 ATTGCCCTATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAG
195 ATTGCCCTATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAG
81877 GGGACTTGGCAAAGTG
260 GGGACTTGGCAAAGTG
* * *
81893 GTTAAAGCGCGTTCCCGGGGTCGCACCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
1 GTGAAAGCGCGTTCCTGGGG-CGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCT
81958 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
65 ATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTG
* *
82023 GCAAAGTGGTGAAGGCGCGTTC-CC-AGGGGCGTTCCTTCCATTATTTAGTCAGAGAATATGTTA
130 GCAAAGTGGTGAAGGCGCGTTCTCCGGGGGGCG--CCTTCCATTATTTTGTCAGAGAATATGTTA
* *
82086 TCATTTCCCTATTATGTCACTCATGCCCCCC
193 TCATTGCCCTATTATGTCACTCATGTCCCCC
82117 AGAGATGCAG
Statistics
Matches: 1419, Mismatches: 155, Indels: 46
0.88 0.10 0.03
Matches are distributed among these distances:
271 4 0.00
272 236 0.17
273 110 0.08
274 34 0.02
275 497 0.35
276 441 0.31
277 97 0.07
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.34
Consensus pattern (275 bp):
GTGAAAGCGCGTTCCTGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
TTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGG
CAAAGTGGTGAAGGCGCGTTCTCCGGGGGGCGCCTTCCATTATTTTGTCAGAGAATATGTTATCA
TTGCCCTATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGG
GGACTTGGCAAAGTG
Found at i:81697 original size:688 final size:685
Alignment explanation
Indices: 80267--82117 Score: 2730
Period size: 688 Copynumber: 2.7 Consensus size: 685
80257 CCCGGGGTCA
* * * *
80267 CGCCTTCCATTGTTTTGTCAGATAATAAGTTATCATTGTCCTATTATGTCACTCATGTCCCCCGG
1 CGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTCCCCCGG
* * *
80332 GGAACTATTCATGTCAGTACCTATTATTTTTTAGGGGACTTGGAAAAGTGGTGAAGGTGCGTTCC
66 GGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGCAAAGTGGTGAAGGTGCGTTCC
* * * * * * * *
80397 CGGGGGTTCTCCTTCCATTACTTTGTCATAGAATATGTTATTACTGCCATATTATGTCATTCATG
131 CGGGCG--CGCCTTCCATTATTTTGTCAGAGAATATGTTATAATTGCCCTATTATGTCAATCATG
* * * * *
80462 TCCCCCGGGGGACTATTCATGTAAGTACCTATTATTTTTTAGGGGACTTGGCAAATTGGTGAAAG
194 TCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGCAAAGTGGTGAAAG
* *
80527 CGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTACCTTATTATGT
259 CGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGT
* * *
80592 CACTCATATCCCCCGGGAAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGTAAAGT
324 CACTCATGTCCCCAGGG-AACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGCAAAGT
* * *
80657 GGTGAAGGCGCGTT-CTCGGGGGTGCGCCTT-TCATTATTTTTTCAGAGAATATGTTATCATTGC
388 GGTGAAGGCGCGTTCCT-AGGGGCGCGCCTTCT-ATTATTTTGTCAGAGAATATGTTATCATTGC
* *
80720 CCTACTATTTCACTCATGTCCCCCGAGGAACTATTCATGTCAATACCTATTATGTTTGAGGGGAC
451 CCTACTATGTCACTCATGTCCCCCAAGGAACTATTCATGTCAATACCTATTATGTTTGAGGGGAC
* * **
80785 TTGGCAAAGTGGTGAAAGCGCGTTTCTGGGGGGCACCTTTTATTATTTTTTGAGAGAATGTTATC
516 TTGGCAAAGTGGTGAAAGCGCGTTTCCGGGGGGCACCTTTCATTATTTTTCAAGAGAATGTTATC
80850 ATTGCCCTATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAG
581 ATTGCCCTATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAG
* * *
80915 GGGACTTGACAAAGTGGTGAAGGCACGTTCTCGGGGGGGG
646 GGGACTTGACAAAGTGGTGAAGGCACATTCTCGAGGGGCG
* * *
80955 GGTCCTTCCATTATTTTATCAGAGAATATGTTATCATTGCCCAATTATGTCACTCATGTCCCCCG
1 CG-CCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTCCCCCG
*
81020 GGGAACTATTTATGTCAGTACCTATTATGTTTGAGGGG-CTTGGCAAAGTGGTGAAGGTGCGTTC
65 GGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGCAAAGTGGTGAAGGTGCGTTC
* * *
81084 CCAGGTGCGCGCCTTCCATTATTTTGTCAGAGAATATGTCATAATTTCCCTATTTTGTCAATCAT
130 CC-GG-GCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATAATTGCCCTATTATGTCAATCAT
* * *
81149 GTCCCCCGGGAAACTATTCATATCAGTACCTATTATGTTTGAGGAGACTTGGCAAAGTGGTGAAA
193 GTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGCAAAGTGGTGAAA
* * * *
81214 GCGCGTTTCTGGGGGCACGCCTTTCATTATTTTGTAAGAGAATATGTTATCATTGCCCTATTATG
258 GCGCGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATG
*
81279 TCACTCATGTCCCCTAGGGAACTATTCATATCAGTACCTATTATGTTTGAGGGGACTTGGCAAAG
323 TCACTCATGTCCCC-AGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGCAAAG
* *
81344 CGGTGAAGGCGAGTTCCTAGGGGCGCGCCTTCTATTATTTTGTCAGAGAATATGTTATCATTGCC
387 TGGTGAAGGCGCGTTCCTAGGGGCGCGCCTTCTATTATTTTGTCAGAGAATATGTTATCATTGCC
* *
81409 CTACTATGTCACTCAAGTCCCCCAAGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACT
452 CTACTATGTCACTCATGTCCCCCAAGGAACTATTCATGTCAATACCTATTATGTTTGAGGGGACT
* *
81474 TGGCAAAGTGGTGAAAGCGCGTTTCCGGGGTGCGCCTTTCATTATTTTGTCAATGA-ATATGTTA
517 TGGCAAAGTGGTGAAAGCGCGTTTCCGGGGGGCACCTTTCATTATTTT-TCAA-GAGA-ATGTTA
*
81538 TCATTGCCCTATTATGTCACTCATGTCCCCCGGGGAACTATTTATGT-ATGTACCTATTATGTTT
579 TCATTGCCCTATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCA-GTACCTATTATGTTT
* * *
81602 GAGGGGACTTGGA-AAAGTGGTGAATGCGCATTC-CTAGGGGCG
643 GAGGGGACTT-GACAAAGTGGTGAAGGCACATTCTCGAGGGGCG
* * * * *
81644 CGCCTTTCATTATTTTGTCAGAGAAGATGTTATCATTACCCTATTAAGTCACTCATGTTCCCCGG
1 CGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTCCCCCGG
* *
81709 GGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGCAAAGTGGTGAAGGCGAGTTCC
66 GGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGCAAAGTGGTGAAGGTGCGTTCC
* * * * *
81774 CGGGGGCG-CTTCCATAATTTT-TTAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTC
131 CGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATAATTGCCCTATTATGTCAATCATGTC
*
81837 CCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGCAAAGTGGTTAAAGCG
196 CCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGCAAAGTGGTGAAAGCG
* *
81902 CGTTCCCGGGGTCGCACCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCA
261 CGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCA
*
81967 CTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGCAAAGTGG
326 CTCATGT-CCCCAGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGCAAAGTGG
* ** * * *
82032 TGAAGGCGCGTTCCCAGGGGCGTTCCTTCCATTATTTAGTCAGAGAATATGTTATCATTTCCCTA
390 TGAAGGCGCGTTCCTAGGGGCGCGCCTTCTATTATTTTGTCAGAGAATATGTTATCATTGCCCTA
* *
82097 TTATGTCACTCATGCCCCCCA
455 CTATGTCACTCATGTCCCCCA
82118 GAGATGCAGA
Statistics
Matches: 1046, Mismatches: 104, Indels: 29
0.89 0.09 0.02
Matches are distributed among these distances:
685 289 0.28
686 16 0.02
687 4 0.00
688 501 0.48
689 136 0.13
690 98 0.09
691 2 0.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (685 bp):
CGCCTTCCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTCCCCCGG
GGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGCAAAGTGGTGAAGGTGCGTTCC
CGGGCGCGCCTTCCATTATTTTGTCAGAGAATATGTTATAATTGCCCTATTATGTCAATCATGTC
CCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGCAAAGTGGTGAAAGCG
CGTTCCCGGGGGCGCGCCTTTCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCA
CTCATGTCCCCAGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGACTTGGCAAAGTGGT
GAAGGCGCGTTCCTAGGGGCGCGCCTTCTATTATTTTGTCAGAGAATATGTTATCATTGCCCTAC
TATGTCACTCATGTCCCCCAAGGAACTATTCATGTCAATACCTATTATGTTTGAGGGGACTTGGC
AAAGTGGTGAAAGCGCGTTTCCGGGGGGCACCTTTCATTATTTTTCAAGAGAATGTTATCATTGC
CCTATTATGTCACTCATGTCCCCCGGGGAACTATTCATGTCAGTACCTATTATGTTTGAGGGGAC
TTGACAAAGTGGTGAAGGCACATTCTCGAGGGGCG
Found at i:82277 original size:32 final size:33
Alignment explanation
Indices: 82240--82304 Score: 91
Period size: 32 Copynumber: 2.0 Consensus size: 33
82230 TAACTTAAAT
82240 TAAAATGTTATGTGA-AGT-TTGAATAAAT-TGAA
1 TAAAATGTTATG-GATA-TATTGAATAAATGTGAA
82272 TAAAATGTTATGGATATATTGAATAAATGTGAA
1 TAAAATGTTATGGATATATTGAATAAATGTGAA
82305 GTGATAAGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
31 3 0.10
32 23 0.77
33 4 0.13
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.37
Consensus pattern (33 bp):
TAAAATGTTATGGATATATTGAATAAATGTGAA
Found at i:82310 original size:23 final size:23
Alignment explanation
Indices: 82266--82310 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
82256 GTTTGAATAA
* *
82266 ATTGAATAAAATGTTATGGATAT
1 ATTGAATAAAATGTGAAGGATAT
82289 ATTGAAT-AAATGTGAAGTGATA
1 ATTGAATAAAATGTGAAG-GATA
82311 AGTTGGTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (23 bp):
ATTGAATAAAATGTGAAGGATAT
Found at i:82592 original size:34 final size:34
Alignment explanation
Indices: 82547--82619 Score: 128
Period size: 34 Copynumber: 2.1 Consensus size: 34
82537 TTAAGTTGAA
*
82547 TTTAATGTTAAATTTCGAATACTATAATTTGTAT
1 TTTAATGTTAAATTTCAAATACTATAATTTGTAT
*
82581 TTTAATTTTAAATTTCAAATACTATAATTTGTAT
1 TTTAATGTTAAATTTCAAATACTATAATTTGTAT
82615 TTTAA
1 TTTAA
82620 AAACAATTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.52
Consensus pattern (34 bp):
TTTAATGTTAAATTTCAAATACTATAATTTGTAT
Found at i:83270 original size:42 final size:42
Alignment explanation
Indices: 83176--83270 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 42
83166 TGGGCTATGA
* * *
83176 ATGTAACCCTGCGGAGATGGCATATGAACTTGTAGGCTTGAC
1 ATGTAACCCTGAGGAGATGGCATATGAACTTGAAGGCTGGAC
* * * *
83218 ATATACCCCTGAGGAGATGGCATCTGAAC-TGAAGGGCTGGGC
1 ATGTAACCCTGAGGAGATGGCATATGAACTTGAA-GGCTGGAC
83260 ATGTAACCCTG
1 ATGTAACCCTG
83271 TGGCATCATC
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
41 3 0.07
42 40 0.93
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.23
Consensus pattern (42 bp):
ATGTAACCCTGAGGAGATGGCATATGAACTTGAAGGCTGGAC
Found at i:84958 original size:30 final size:30
Alignment explanation
Indices: 84892--84987 Score: 92
Period size: 30 Copynumber: 3.3 Consensus size: 30
84882 TAATTAGCAC
* * *
84892 AAAAAATAATTA-AGTAATA-AATTTAAAT
1 AAAAAATAATTATATTAATATTATTTTAAT
*
84920 AAATAATAATTATATTAATATTATTTTAAT
1 AAAAAATAATTATATTAATATTATTTTAAT
*
84950 AAAAAATAA-TAT-TTATATAATTATATTAAT
1 AAAAAATAATTATATTA-AT-ATTATTTTAAT
*
84980 ATAAAATA
1 AAAAAATA
84988 GAACAACTAT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
28 14 0.25
29 11 0.19
30 32 0.56
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (30 bp):
AAAAAATAATTATATTAATATTATTTTAAT
Found at i:84981 original size:14 final size:14
Alignment explanation
Indices: 84925--84983 Score: 57
Period size: 14 Copynumber: 4.3 Consensus size: 14
84915 TAAATAAATA
84925 ATAATTATATTAAT
1 ATAATTATATTAAT
* * *
84939 ATTATTTTAATAA-
1 ATAATTATATTAAT
* * *
84952 AAAATAATATTTAT
1 ATAATTATATTAAT
84966 ATAATTATATTAAT
1 ATAATTATATTAAT
84980 ATAA
1 ATAA
84984 AATAGAACAA
Statistics
Matches: 32, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
13 7 0.22
14 25 0.78
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATATTAAT
Found at i:85287 original size:60 final size:60
Alignment explanation
Indices: 85188--85338 Score: 205
Period size: 60 Copynumber: 2.5 Consensus size: 60
85178 ATGACATTTA
* *
85188 ATGAAAGGCGCGTCCCCGGGGATGCGCCTTACCCCCGTGGCATCTGACTCAGCA-AAACCCC
1 ATGAAA-GCGCGTCCCCAGGGATACGCCTTACCCCCGTGGCATCTGACTCAGCATAAA-CCC
* **
85249 ATGAAAGCACGTCCCCAGGGATACGCCTTACCGGCGTGGCATCTGACTCAGCATAAACCC
1 ATGAAAGCGCGTCCCCAGGGATACGCCTTACCCCCGTGGCATCTGACTCAGCATAAACCC
* *
85309 AGGTAAAGCGCATCCCCAGGGATACGCCTT
1 ATG-AAAGCGCGTCCCCAGGGATACGCCTT
85339 TGTGCCACCT
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
60 47 0.59
61 33 0.41
ACGTcount: A:0.25, C:0.34, G:0.25, T:0.16
Consensus pattern (60 bp):
ATGAAAGCGCGTCCCCAGGGATACGCCTTACCCCCGTGGCATCTGACTCAGCATAAACCC
Found at i:86690 original size:21 final size:21
Alignment explanation
Indices: 86666--86726 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
86656 AACTTTGAAA
86666 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
86687 AAAT-G-TTTC----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
*
86701 AAATGGTTTTAAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
86722 AAATG
1 AAATG
86727 TTTCTTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 14
0.64 0.06 0.30
Matches are distributed among these distances:
14 5 0.17
15 4 0.13
16 3 0.10
19 4 0.13
20 4 0.13
21 10 0.33
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:86772 original size:36 final size:36
Alignment explanation
Indices: 86658--86777 Score: 172
Period size: 35 Copynumber: 3.3 Consensus size: 36
86648 TGGTAACAAA
86658 CTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
86695 CTTTG-AAAATGGTTTTAAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
* *
86730 CTTTGAAAAATAGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAAT-GGTTTTCAAAGTTTGGTAAATGTTT
*
86767 -GTTGAAAAATG
1 CTTTGAAAAATG
86778 ATAATGGGAT
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
35 35 0.46
36 14 0.18
37 27 0.36
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.43
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:91327 original size:35 final size:36
Alignment explanation
Indices: 91254--91400 Score: 162
Period size: 35 Copynumber: 4.2 Consensus size: 36
91244 TGAAAGTATT
*
91254 AAAATGGTTTTC-AAGTTTGGTAACA-A--ACTTTGAA
1 AAAATGGTTTTCAAAGTTTGGTAA-ATATTTCTTTG-A
*
91288 AAAATGGTTTTCAAATTTTGGTAAATATTTCTTTG-
1 AAAATGGTTTTCAAAGTTTGGTAAATATTTCTTTGA
*
91323 AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTGA
1 AAAATGGTTTTCAAAGTTTGGTAAATATTTCTTTGA
* * * *
91359 AAAATAGTTTTTCAAAGTTTGGTAGATGTTT-GTTGA
1 AAAAT-GGTTTTCAAAGTTTGGTAAATATTTCTTTGA
91395 AAAATG
1 AAAATG
91401 ATAATGGGAT
Statistics
Matches: 100, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
34 13 0.13
35 45 0.45
36 14 0.14
37 28 0.28
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.42
Consensus pattern (36 bp):
AAAATGGTTTTCAAAGTTTGGTAAATATTTCTTTGA
Found at i:91395 original size:36 final size:36
Alignment explanation
Indices: 91281--91400 Score: 163
Period size: 35 Copynumber: 3.3 Consensus size: 36
91271 TGGTAACAAA
* *
91281 CTTTGAAAAAATGGTTTTCAAATTTTGGTAAATATTT
1 CTTTG-AAAAATGGTTTTCAAAGTTTGGTAAATGTTT
91318 CTTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
* *
91353 CTTTGAAAAATAGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAAT-GGTTTTCAAAGTTTGGTAAATGTTT
*
91390 -GTTGAAAAATG
1 CTTTGAAAAATG
91401 ATAATGGGAT
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
35 34 0.45
36 14 0.18
37 28 0.37
ACGTcount: A:0.33, C:0.05, G:0.18, T:0.44
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:93009 original size:22 final size:22
Alignment explanation
Indices: 92965--93016 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
92955 GTATTGTAAT
*
92965 GTATATTATATATACATGCATAA
1 GTATA-TAAATATACATGCATAA
* *
92988 GTATATAAATATATATGTATAA
1 GTATATAAATATACATGCATAA
*
93010 GTTTATA
1 GTATATA
93017 TGTACTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 20 0.80
23 5 0.20
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.42
Consensus pattern (22 bp):
GTATATAAATATACATGCATAA
Found at i:93519 original size:20 final size:21
Alignment explanation
Indices: 93474--93527 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 21
93464 ACTATGTATA
93474 ATGTATATTATATACACATGCAT
1 ATGTATA-TATATACACA-GCAT
*
93497 ATGTATATATATACACA-CGT
1 ATGTATATATATACACAGCAT
*
93517 ATGTATGTATA
1 ATGTATATATA
93528 AGTATAAGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 12 0.41
22 10 0.34
23 7 0.24
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (21 bp):
ATGTATATATATACACAGCAT
Found at i:94759 original size:23 final size:22
Alignment explanation
Indices: 94668--94760 Score: 93
Period size: 23 Copynumber: 4.2 Consensus size: 22
94658 TAAAATATAT
* * *
94668 AATATATTTTTTTATAATGTTAA
1 AATATATTATTTAATTAT-TTAA
*
94691 AATATATTATTTAATTATTGAA
1 AATATATTATTTAATTATTTAA
*
94713 AATATAGTA---AATTATTATAA
1 AATATATTATTTAATTATT-TAA
94733 AATATATTATTTTAATTATTTAA
1 AATATATTA-TTTAATTATTTAA
94756 AATAT
1 AATAT
94761 TGATATATTC
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
19 7 0.12
20 10 0.17
22 11 0.19
23 23 0.40
24 7 0.12
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (22 bp):
AATATATTATTTAATTATTTAA
Found at i:96641 original size:122 final size:122
Alignment explanation
Indices: 96409--96694 Score: 351
Period size: 122 Copynumber: 2.3 Consensus size: 122
96399 AAGCTACATG
** * * * ** *
96409 TTTAGTATTTAAACTATCAGTTTTAGTCTGTTTTAGTATTTAAACTTTCAAAATTTTCAAAATCA
1 TTTAGTACATAAACTATAAGTTTTGGTCCGTTTTAGTACCTAAACTTCCAAAATTTTCAAAATCA
* * *
96474 TACCTAAAGTTTAGTTTTTGTTTCATTTTAGTACCCTATCGTTAAAAACTTAACACA
66 TACCTAAAGTTTAGTTTTTGTTTCATTTTACTACCCTAACATTAAAAACTTAACACA
* * * * **
96531 TTTAGTACCTAGACTATTAGTTTTGGTCCGTTTTAGTACCTAACCTTCCAATTTTTTCAAAATCA
1 TTTAGTACATAAACTATAAGTTTTGGTCCGTTTTAGTACCTAAACTTCCAAAATTTTCAAAATCA
* * *
96596 TACCTAACGTTTAGTTTTTGTTTCATTTTACTATCCC-AACATTAAAAACTTAACGCG
66 TACCTAAAGTTTAGTTTTTGTTTCATTTTACTA-CCCTAACATTAAAAACTTAACACA
*
96653 TTTAGTACATAAACTATCAAG-TTTGGTCCATTTTAGTACCTA
1 TTTAGTACATAAACTAT-AAGTTTTGGTCCGTTTTAGTACCTA
96695 TATTTTTAAT
Statistics
Matches: 140, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
122 135 0.96
123 5 0.04
ACGTcount: A:0.30, C:0.17, G:0.09, T:0.43
Consensus pattern (122 bp):
TTTAGTACATAAACTATAAGTTTTGGTCCGTTTTAGTACCTAAACTTCCAAAATTTTCAAAATCA
TACCTAAAGTTTAGTTTTTGTTTCATTTTACTACCCTAACATTAAAAACTTAACACA
Found at i:97322 original size:20 final size:20
Alignment explanation
Indices: 97278--97609 Score: 281
Period size: 20 Copynumber: 16.2 Consensus size: 20
97268 AATGACCAAC
*
97278 AAAATCGCAACGCGA--AATA
1 AAAATCGCAACGCGATTAA-G
*
97297 AAAATCGCAACGCGATTTAG
1 AAAATCGCAACGCGATTAAG
* *
97317 AAAATCGCAACGTTGA-AAAG
1 AAAATCGCAACG-CGATTAAG
*
97337 AAAATCGCAACG-G-TCAAAAG
1 AAAATCGCAACGCGAT--TAAG
***
97357 AAAATCGCAACGCGATATTCC
1 AAAATCGCAACGCGAT-TAAG
*
97378 AAGAATCGCAATGCGATTAAG
1 AA-AATCGCAACGCGATTAAG
* ***
97399 AGAATCGCAACGCGATCTTCC
1 AAAATCGCAACGCGAT-TAAG
* *
97420 AAGAATCGCAATGCGATTCAG
1 AA-AATCGCAACGCGATTAAG
97441 AAAATCGCAACGCGATTCCAAG
1 AAAATCGCAACGCGATT--AAG
97463 --AATCGCAACGCGATTAAG
1 AAAATCGCAACGCGATTAAG
97481 AAAATCGCAACGCGATTCCAAG
1 AAAATCGCAACGCGATT--AAG
97503 --AATCGCAACGCGATTAAG
1 AAAATCGCAACGCGATTAAG
97521 AAAATCGCAACGCGATTCCAAG
1 AAAATCGCAACGCGATT--AAG
*
97543 --AATCGCAACGCGATTCAG
1 AAAATCGCAACGCGATTAAG
97561 AAAATCGCAACGCGATTCAGAAAG
1 AAAATCGCAACGCGATT----AAG
97585 AAAATCGCAACGCGATTAAG
1 AAAATCGCAACGCGATTAAG
97605 AAAAT
1 AAAAT
97610 GGGTAAATTC
Statistics
Matches: 259, Mismatches: 27, Indels: 53
0.76 0.08 0.16
Matches are distributed among these distances:
18 9 0.03
19 15 0.06
20 167 0.64
21 14 0.05
22 35 0.14
24 19 0.07
ACGTcount: A:0.42, C:0.23, G:0.20, T:0.16
Consensus pattern (20 bp):
AAAATCGCAACGCGATTAAG
Found at i:97716 original size:6 final size:6
Alignment explanation
Indices: 97705--97779 Score: 150
Period size: 6 Copynumber: 12.5 Consensus size: 6
97695 GACACGTATT
97705 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
97753 ACCACG ACCACG ACCACG ACCACG ACC
1 ACCACG ACCACG ACCACG ACCACG ACC
97780 CGAGACGAGA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 69 1.00
ACGTcount: A:0.33, C:0.51, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:98291 original size:6 final size:6
Alignment explanation
Indices: 98280--98424 Score: 245
Period size: 6 Copynumber: 23.5 Consensus size: 6
98270 TCTCGTCTCG
98280 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
98328 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
*
98376 GGTCGT GGTCGT GGTCGT GGTAATACGT GTTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GG---T-CGT GGTCGT GGTCGT GGTCGT GGT
98425 AATACGTGTC
Statistics
Matches: 133, Mismatches: 2, Indels: 8
0.93 0.01 0.06
Matches are distributed among these distances:
6 127 0.95
7 1 0.01
9 1 0.01
10 4 0.03
ACGTcount: A:0.02, C:0.16, G:0.48, T:0.34
Consensus pattern (6 bp):
GGTCGT
Found at i:98553 original size:20 final size:20
Alignment explanation
Indices: 98528--98746 Score: 270
Period size: 20 Copynumber: 10.8 Consensus size: 20
98518 TCATTTTCTT
98528 AATCGCGTTGCGATTCTTGG
1 AATCGCGTTGCGATTCTTGG
98548 AATCGCGTTGCGATTCTTGG
1 AATCGCGTTGCGATTCTTGG
98568 AATCGCGTTGCGATTTTCTT--
1 AATCGCGTTGCGA--TTCTTGG
98588 AATCGCGTTGCGATTCTTGG
1 AATCGCGTTGCGATTCTTGG
98608 AATCGCGTTGCGATTTTCTT--
1 AATCGCGTTGCGA--TTCTTGG
98628 AATCGCGTTGCGATTCTTGG
1 AATCGCGTTGCGATTCTTGG
*
98648 AATCGCGTTGCGATT-TTCTG
1 AATCGCGTTGCGATTCTT-GG
*
98668 AATCGCATTGCGATTCTTGG
1 AATCGCGTTGCGATTCTTGG
*
98688 AAGATCGCGTTGCGATTCTCT-T
1 -A-ATCGCGTTGCGATTCT-TGG
*
98710 AATCGCATTGCGATTCTTGG
1 AATCGCGTTGCGATTCTTGG
98730 AATATCGCGTTGCGATT
1 -A-ATCGCGTTGCGATT
98747 TTCTTTTGAC
Statistics
Matches: 175, Mismatches: 8, Indels: 30
0.82 0.04 0.14
Matches are distributed among these distances:
18 10 0.06
19 3 0.02
20 118 0.67
21 5 0.03
22 38 0.22
23 1 0.01
ACGTcount: A:0.17, C:0.20, G:0.26, T:0.37
Consensus pattern (20 bp):
AATCGCGTTGCGATTCTTGG
Found at i:98613 original size:60 final size:60
Alignment explanation
Indices: 98520--98746 Score: 302
Period size: 60 Copynumber: 3.7 Consensus size: 60
98510 GAATTTACTC
98520 ATTTTCTTAATCGCGTTGCGATTCTTGGAATCGCGTTGCGATTCTTGGAATCGCGTTGCG
1 ATTTTCTTAATCGCGTTGCGATTCTTGGAATCGCGTTGCGATTCTTGGAATCGCGTTGCG
98580 ATTTTCTTAATCGCGTTGCGATTCTTGGAATCGCGTTGCGATTTTCTT--AATCGCGTTGCG
1 ATTTTCTTAATCGCGTTGCGATTCTTGGAATCGCGTTGCGA--TTCTTGGAATCGCGTTGCG
* *
98640 A--TTCTTGGAATCGCGTTGCGATT-TTCTGAATCGCATTGCGATTCTTGGAAGATCGCGTTGCG
1 ATTTTCTT--AATCGCGTTGCGATTCTT-GGAATCGCGTTGCGATTCTTGG-A-ATCGCGTTGCG
* *
98702 ATTCTCTTAATCGCATTGCGATTCTTGGAATATCGCGTTGCGATT
1 ATTTTCTTAATCGCGTTGCGATTCTTGG-A-ATCGCGTTGCGATT
98747 TTCTTTTGAC
Statistics
Matches: 147, Mismatches: 6, Indels: 24
0.83 0.03 0.14
Matches are distributed among these distances:
58 10 0.07
59 2 0.01
60 82 0.56
61 1 0.01
62 32 0.22
63 3 0.02
64 17 0.12
ACGTcount: A:0.17, C:0.20, G:0.25, T:0.39
Consensus pattern (60 bp):
ATTTTCTTAATCGCGTTGCGATTCTTGGAATCGCGTTGCGATTCTTGGAATCGCGTTGCG
Found at i:98763 original size:42 final size:40
Alignment explanation
Indices: 98528--98827 Score: 344
Period size: 40 Copynumber: 7.4 Consensus size: 40
98518 TCATTTTCTT
98528 AATCGCGTTGCGA--TTCTTGGAATCGCGTTGCGATTCTTGG
1 AATCGCGTTGCGATTTTCTT--AATCGCGTTGCGATTCTTGG
98568 AATCGCGTTGCGATTTTCTTAATCGCGTTGCGATTCTTGG
1 AATCGCGTTGCGATTTTCTTAATCGCGTTGCGATTCTTGG
98608 AATCGCGTTGCGATTTTCTTAATCGCGTTGCGATTCTTGG
1 AATCGCGTTGCGATTTTCTTAATCGCGTTGCGATTCTTGG
* *
98648 AATCGCGTTGCGATTTTCTGAATCGCATTGCGATTCTTGG
1 AATCGCGTTGCGATTTTCTTAATCGCGTTGCGATTCTTGG
* *
98688 AAGATCGCGTTGCGATTCTCTTAATCGCATTGCGATTCTTGG
1 -A-ATCGCGTTGCGATTTTCTTAATCGCGTTGCGATTCTTGG
* **
98730 AATATCGCGTTGCGATTTTCTT--TTGACCGTTGCGATT-TTCT
1 -A-ATCGCGTTGCGATTTTCTTAATCG--CGTTGCGATTCTTGG
** * * *
98771 TTTCAACGTTGCGATTTTCTAAATCGCGTTGCGATT-TT-T
1 AATC-GCGTTGCGATTTTCTTAATCGCGTTGCGATTCTTGG
*
98810 ATTTCGCGTTGCGATTTT
1 A-ATCGCGTTGCGATTTT
98828 GTTGGTCATT
Statistics
Matches: 233, Mismatches: 17, Indels: 21
0.86 0.06 0.08
Matches are distributed among these distances:
39 15 0.06
40 142 0.61
41 3 0.01
42 73 0.31
ACGTcount: A:0.16, C:0.20, G:0.24, T:0.41
Consensus pattern (40 bp):
AATCGCGTTGCGATTTTCTTAATCGCGTTGCGATTCTTGG
Found at i:98800 original size:20 final size:20
Alignment explanation
Indices: 98520--98827 Score: 235
Period size: 20 Copynumber: 15.2 Consensus size: 20
98510 GAATTTACTC
*
98520 ATTTTCTTAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCG
*
98540 ATTCTT-GGAATCGCGTTGCG
1 ATT-TTCTGAATCGCGTTGCG
*
98560 ATTCTT-GGAATCGCGTTGCG
1 ATT-TTCTGAATCGCGTTGCG
*
98580 ATTTTCTTAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCG
*
98600 ATTCTT-GGAATCGCGTTGCG
1 ATT-TTCTGAATCGCGTTGCG
*
98620 ATTTTCTTAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCG
*
98640 ATTCTT-GGAATCGCGTTGCG
1 ATT-TTCTGAATCGCGTTGCG
*
98660 ATTTTCTGAATCGCATTGCG
1 ATTTTCTGAATCGCGTTGCG
*
98680 ATTCTT-GGAAGATCGCGTTGCG
1 ATT-TTCTG-A-ATCGCGTTGCG
* * *
98702 ATTCTCTTAATCGCATTGCG
1 ATTTTCTGAATCGCGTTGCG
*
98722 ATTCTT-GGAATATCGCGTTGCG
1 ATT-TTCTG-A-ATCGCGTTGCG
98744 ATTTTCTTTTG-A-C-CGTTGCG
1 ATTTTC---TGAATCGCGTTGCG
** *
98764 ATTTTCT-TTTCAACGTTGCG
1 ATTTTCTGAATC-GCGTTGCG
*
98784 ATTTTCTAAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCG
*
98804 ATTTT-T-ATTTCGCGTTGCG
1 ATTTTCTGA-ATCGCGTTGCG
98823 ATTTT
1 ATTTT
98828 GTTGGTCATT
Statistics
Matches: 237, Mismatches: 28, Indels: 47
0.76 0.09 0.15
Matches are distributed among these distances:
17 1 0.00
18 2 0.01
19 22 0.09
20 166 0.70
21 18 0.08
22 27 0.11
25 1 0.00
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (20 bp):
ATTTTCTGAATCGCGTTGCG
Found at i:100256 original size:75 final size:75
Alignment explanation
Indices: 100173--100314 Score: 232
Period size: 75 Copynumber: 1.9 Consensus size: 75
100163 TAACATTTTC
* **
100173 TGTTAGCCAACCAAAAATGTTATTAAAAATATGTGCTGTC-AAAAATATTAAAAAAATTAACATT
1 TGTTAGCCAACCAAAAATGTTATTAAAAATACGTGCTACCAAAAAATATT-AAAAAATTAACATT
100237 TTACGTTATTT
65 TTACGTTATTT
*
100248 TGTTAGCCAACCAAAAATGTTATTAAGAATACGTGCTACCAAAAAATATTAAAAAATTAACATTT
1 TGTTAGCCAACCAAAAATGTTATTAAAAATACGTGCTACCAAAAAATATTAAAAAATTAACATTT
100313 TA
66 TA
100315 ATTTACGTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
75 53 0.85
76 9 0.15
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (75 bp):
TGTTAGCCAACCAAAAATGTTATTAAAAATACGTGCTACCAAAAAATATTAAAAAATTAACATTT
TACGTTATTT
Found at i:101132 original size:43 final size:43
Alignment explanation
Indices: 101070--101154 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
101060 TGGAAGGTCG
* *
101070 ACCTAAGATCTATGCTTCTTCAG-TTTAAAGACAGCCCCTAGGA
1 ACCTAAGATATATGATTCTTC-GTTTTAAAGACAGCCCCTAGGA
* *
101113 ACCTAAGATATATGATTCTTCGTTTTAAAGAGAGCCCTTAGG
1 ACCTAAGATATATGATTCTTCGTTTTAAAGACAGCCCCTAGG
101155 TTTAGGTGAG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 1 0.03
43 36 0.97
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (43 bp):
ACCTAAGATATATGATTCTTCGTTTTAAAGACAGCCCCTAGGA
Found at i:105983 original size:10 final size:10
Alignment explanation
Indices: 105952--106016 Score: 51
Period size: 10 Copynumber: 6.3 Consensus size: 10
105942 TTTTTCCTGT
*
105952 AAAAAGAGAGA
1 AAAAAGA-AAA
*
105963 AAAAA-ATAA
1 AAAAAGAAAA
*
105972 AATAAGAAAA
1 AAAAAGAAAA
*
105982 AAAAAGAAAT
1 AAAAAGAAAA
*
105992 AAGAAGAAAAGA
1 AAAAAG-AAA-A
106004 AAAAAGAAAA
1 AAAAAGAAAA
106014 AAA
1 AAA
106017 TAAATAAAAG
Statistics
Matches: 42, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
9 5 0.12
10 21 0.50
11 11 0.26
12 5 0.12
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.05
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:105983 original size:15 final size:16
Alignment explanation
Indices: 105960--106020 Score: 79
Period size: 17 Copynumber: 3.8 Consensus size: 16
105950 GTAAAAAGAG
105960 AGAAAAAAATAAAATA
1 AGAAAAAAATAAAATA
*
105976 AGAAAAAAAAAGAAATA
1 AGAAAAAAATA-AAATA
* *
105993 AGAAGAAAAGAAAA-A
1 AGAAAAAAATAAAATA
106008 AGAAAAAAATAAA
1 AGAAAAAAATAAA
106021 TAAAAGAGGG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
15 12 0.31
16 13 0.33
17 14 0.36
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.07
Consensus pattern (16 bp):
AGAAAAAAATAAAATA
Found at i:106008 original size:7 final size:7
Alignment explanation
Indices: 105960--106015 Score: 53
Period size: 7 Copynumber: 8.1 Consensus size: 7
105950 GTAAAAAGAG
105960 AGAAAAA
1 AGAAAAA
*
105967 A-ATAAA
1 AGAAAAA
* *
105973 ATAAGAA
1 AGAAAAA
105980 A-AAAAA
1 AGAAAAA
*
105986 AGAAATA
1 AGAAAAA
105993 AGAAGAAA
1 AGAA-AAA
106001 AGAAAAA
1 AGAAAAA
106008 AGAAAAA
1 AGAAAAA
106015 A
1 A
106016 ATAAATAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
6 10 0.25
7 24 0.60
8 6 0.15
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.05
Consensus pattern (7 bp):
AGAAAAA
Found at i:106027 original size:17 final size:15
Alignment explanation
Indices: 105960--106027 Score: 64
Period size: 16 Copynumber: 4.2 Consensus size: 15
105950 GTAAAAAGAG
*
105960 AGAAAAAAATAAAATA
1 AGAAAAAAA-AAAAAA
105976 AGAAAAAAAAAGAAATA
1 AGAAAAAAAAA-AAA-A
* *
105993 AGAAGAAAAGAAAAA
1 AGAAAAAAAAAAAAA
106008 AGAAAAAAATAAATAAA
1 AGAAAAAAA-AAA-AAA
106025 AGA
1 AGA
106028 GGGGTTCACG
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
15 11 0.26
16 16 0.37
17 16 0.37
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (15 bp):
AGAAAAAAAAAAAAA
Found at i:107684 original size:125 final size:125
Alignment explanation
Indices: 107462--107693 Score: 374
Period size: 125 Copynumber: 1.9 Consensus size: 125
107452 CAACAAAGCA
* * * * * *
107462 AATCAAGTTCGATTCAATCTTCCGTGAAGAGTAGCAAAGTGGATCAAAACTTTTCGAGTTTGATC
1 AATCAAGTTCGATTCAATATTCCCTGAAGAGCAACAAAGTAGATCAAAACTTTTCGAGTCTGATC
*
107527 TACCCTAAAGAGTAGTGGAGCAGATCCTCATTCCTTTTTGGTCTCCCTGAGCAGTGAAAC
66 TACCCTAAAGAGTAGTGGAGCAGATCCTCATTCCCTTTTGGTCTCCCTGAGCAGTGAAAC
*
107587 AATCAAGTTCGATTCAATATTCCCTGAAGAGCAACGAAGTAGATCAAAACTTTTCGAGTCTGATC
1 AATCAAGTTCGATTCAATATTCCCTGAAGAGCAACAAAGTAGATCAAAACTTTTCGAGTCTGATC
* *
107652 TCCCCTAAAGAGTAGTGGAGCATATCCTCATTCCCTTTTGGT
66 TACCCTAAAGAGTAGTGGAGCAGATCCTCATTCCCTTTTGGT
107694 TATCATAAAG
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
125 97 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (125 bp):
AATCAAGTTCGATTCAATATTCCCTGAAGAGCAACAAAGTAGATCAAAACTTTTCGAGTCTGATC
TACCCTAAAGAGTAGTGGAGCAGATCCTCATTCCCTTTTGGTCTCCCTGAGCAGTGAAAC
Found at i:109360 original size:35 final size:35
Alignment explanation
Indices: 109308--109375 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
109298 TTCCTTCTAA
*
109308 TTATGTTATAAGGTTTAGACTTTAGAGTTTATGTG
1 TTATGTTATAAGATTTAGACTTTAGAGTTTATGTG
* *
109343 TTATGATT-TAAGATTTAGAGTTTAGGGTTTATG
1 TTATG-TTATAAGATTTAGACTTTAGAGTTTATG
109376 GTTTAGAGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 27 0.93
36 2 0.07
ACGTcount: A:0.26, C:0.01, G:0.24, T:0.49
Consensus pattern (35 bp):
TTATGTTATAAGATTTAGACTTTAGAGTTTATGTG
Found at i:109400 original size:49 final size:48
Alignment explanation
Indices: 109316--109576 Score: 147
Period size: 49 Copynumber: 5.3 Consensus size: 48
109306 AATTATGTTA
* * *
109316 TAAGGTTTAGACTTTAGAGTTTATGTGTTATGATTTAAGATTTAGAGTT
1 TAAGGTTTAG-GTTTAGAGTTTATGTGATAGGATTTAAGATTTAGAGTT
* * * *
109365 TAGGGTTTATGGTTTAGAGTTTTTGTGATAGGATTTAAGGTTTATAGTT
1 TAAGGTTTA-GGTTTAGAGTTTATGTGATAGGATTTAAGATTTAGAGTT
* ** * * * *
109414 TAAGGTTTAGGTTTAG-GTATTAGGT-ATTAGGGGTTAGGGTATAGGGTT
1 TAAGGTTTAGGTTTAGAGT-TTATGTGA-TAGGATTTAAGATTTAGAGTT
* * * * * * *
109462 T-ATGTTATATGATTTA-AGGTTTATAGT-TTATGGTTTTAGGGTTTA-TGTGT
1 TAAGGTT-TA-GGTTTAGA-GTTTAT-GTGATA-GGATTTAAGATTTAGAGT-T
* * *
109512 TAGGGTTTAGAGTTTAGAGTTTATGTGATATGATTTAAGGTTTAGAGTT
1 TAAGGTTTAG-GTTTAGAGTTTATGTGATAGGATTTAAGATTTAGAGTT
*
109561 TAGGGTTTAGGGTTTA
1 TAAGGTTTA-GGTTTA
109577 TGTGTTAGGG
Statistics
Matches: 164, Mismatches: 32, Indels: 32
0.72 0.14 0.14
Matches are distributed among these distances:
47 7 0.04
48 29 0.18
49 89 0.54
50 35 0.21
51 4 0.02
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (48 bp):
TAAGGTTTAGGTTTAGAGTTTATGTGATAGGATTTAAGATTTAGAGTT
Found at i:109436 original size:7 final size:6
Alignment explanation
Indices: 109356--109614 Score: 59
Period size: 7 Copynumber: 37.5 Consensus size: 6
109346 TGATTTAAGA
** *
109356 TTTAGAG TTTAGGG TTTATGG TTTAGAG TTTTTG TGATAGG ATTTAAGG
1 TTTAG-G TTTA-GG TTTA-GG TTTAG-G TTTAGG T-TTAGG -TTT-AGG
* *
109405 TTTATAG TTTAAGG TTTAGG TTTAGG TATTAGG TATTAGGG GTTAGGG
1 TTTA-GG TTT-AGG TTTAGG TTTAGG T-TTAGG T-TTA-GG TTTA-GG
* * * *
109453 TATAGGG TTTATG TTATATGA TTTAAGG TTTATAG TTTATGG TTTTAGGG
1 TTTA-GG TTTAGG TT-TA-GG TTT-AGG TTTA-GG TTTA-GG -TTTA-GG
* * * *
109503 TTTATG TGTTAGGG TTTAGAG TTTAGAG TTTATG TGATATGA TTTAAGG
1 TTTAGG T-TTA-GG TTTAG-G TTTAG-G TTTAGG T-TTA-GG TTT-AGG
* *
109552 TTTAGAG TTTAGGG TTTAGGG TTTATG TGTTAGG GTTAGTG TTTAAGG
1 TTTAG-G TTTA-GG TTTA-GG TTTAGG T-TTAGG TTTAG-G TTT-AGG
* *
109600 TTTAGA TTTAAG TTT
1 TTTAGG TTTAGG TTT
109615 GCGCATGAAG
Statistics
Matches: 192, Mismatches: 35, Indels: 51
0.69 0.13 0.18
Matches are distributed among these distances:
6 40 0.21
7 128 0.67
8 24 0.12
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (6 bp):
TTTAGG
Found at i:109482 original size:21 final size:21
Alignment explanation
Indices: 109458--109509 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
109448 TAGGGTATAG
109458 GGTTTATGTTATAT-GATTTAA
1 GGTTTATGTT-TATGGATTTAA
* *
109479 GGTTTATAGTTTATGGTTTTAG
1 GGTTTAT-GTTTATGGATTTAA
109501 GGTTTATGT
1 GGTTTATGT
109510 GTTAGGGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.54
Consensus pattern (21 bp):
GGTTTATGTTTATGGATTTAA
Found at i:109527 original size:43 final size:43
Alignment explanation
Indices: 109455--109536 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
109445 GGTTAGGGTA
* *
109455 TAGGGTTTATGTTATATGATTTAAGGTTTATAGTTTATGGTTT
1 TAGGGTTTATGTTATAGGATTTAAGGTTTAGAGTTTATGGTTT
*
109498 TAGGGTTTATGTGT-TAGGGTTT-AGAGTTTAGAGTTTATG
1 TAGGGTTTATGT-TATAGGATTTAAG-GTTTAGAGTTTATG
109537 TGATATGATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 2 0.06
43 31 0.91
44 1 0.03
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (43 bp):
TAGGGTTTATGTTATAGGATTTAAGGTTTAGAGTTTATGGTTT
Found at i:109535 original size:28 final size:28
Alignment explanation
Indices: 109487--109576 Score: 85
Period size: 28 Copynumber: 3.2 Consensus size: 28
109477 AAGGTTTATA
* *
109487 GTTTATGGTTTTAGGGTTTATGTGTTAGG
1 GTTTAAGG-TTTAGAGTTTATGTGTTAGG
* *
109516 GTTT-AGAGTTTAGAGTTTATGTGATATG
1 GTTTAAG-GTTTAGAGTTTATGTGTTAGG
* *
109544 ATTTAAGGTTTAGAGTTTA-GGGTTTAGG
1 GTTTAAGGTTTAGAGTTTATGTG-TTAGG
109572 GTTTA
1 GTTTA
109577 TGTGTTAGGG
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
27 2 0.04
28 40 0.82
29 7 0.14
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (28 bp):
GTTTAAGGTTTAGAGTTTATGTGTTAGG
Found at i:112074 original size:17 final size:17
Alignment explanation
Indices: 112052--112141 Score: 162
Period size: 17 Copynumber: 5.3 Consensus size: 17
112042 TTTTGTAGGT
112052 TCGAGTTCGAGCTTGAA
1 TCGAGTTCGAGCTTGAA
112069 TCGAGTTCGAGCTTGAA
1 TCGAGTTCGAGCTTGAA
112086 TCGAGTTCGAGCTTGAA
1 TCGAGTTCGAGCTTGAA
*
112103 TCGAGCTCGAGCTTGAA
1 TCGAGTTCGAGCTTGAA
*
112120 TCGAGCTCGAGCTTGAA
1 TCGAGTTCGAGCTTGAA
112137 TCGAG
1 TCGAG
112142 CTCAAATTCA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
17 72 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (17 bp):
TCGAGTTCGAGCTTGAA
Found at i:112095 original size:34 final size:34
Alignment explanation
Indices: 112052--112179 Score: 177
Period size: 34 Copynumber: 3.7 Consensus size: 34
112042 TTTTGTAGGT
*
112052 TCGAGTTCGAGCTTGAATCGAGTTCGAGCTTGAA
1 TCGAGTTCGAGCTTGAATCGAGCTCGAGCTTGAA
112086 TCGAGTTCGAGCTTGAATCGAGCTCGAGCTTGAA
1 TCGAGTTCGAGCTTGAATCGAGCTCGAGCTTGAA
* ** *
112120 TCGAGCTCGAGCTTGAATCGAGCTC-AAATTCAA
1 TCGAGTTCGAGCTTGAATCGAGCTCGAGCTTGAA
*
112153 GTTTGAGTTCGAGCTTGAATCGAGCTC
1 --TCGAGTTCGAGCTTGAATCGAGCTC
112180 AAAATCGAGC
Statistics
Matches: 85, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
33 5 0.06
34 57 0.67
35 23 0.27
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (34 bp):
TCGAGTTCGAGCTTGAATCGAGCTCGAGCTTGAA
Found at i:112112 original size:23 final size:23
Alignment explanation
Indices: 112086--112223 Score: 75
Period size: 23 Copynumber: 6.0 Consensus size: 23
112076 CGAGCTTGAA
112086 TCGAGTTCGAGCTTGAATCGAGC
1 TCGAGTTCGAGCTTGAATCGAGC
* * *
112109 TCGAGCTT-GA-ATCGAGCTCGAGC
1 TCGAG-TTCGAGCTTGA-ATCGAGC
* * ** * *
112132 TTGA-ATCGAGCTCAAATTCAAGT
1 TCGAGTTCGAGCTTGAA-TCGAGC
*
112155 TTGAGTTCGAGCTTGAATCGAGC
1 TCGAGTTCGAGCTTGAATCGAGC
* ** *
112178 TCAAAATCGAGCTTCAATCGAGC
1 TCGAGTTCGAGCTTGAATCGAGC
* *
112201 TAGAGTCTCGAGCTTCAATCGAG
1 TCGAGT-TCGAGCTTGAATCGAG
112224 TTCTTGAATT
Statistics
Matches: 84, Mismatches: 24, Indels: 13
0.69 0.20 0.11
Matches are distributed among these distances:
21 1 0.01
22 5 0.06
23 51 0.61
24 27 0.32
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (23 bp):
TCGAGTTCGAGCTTGAATCGAGC
Found at i:112123 original size:11 final size:11
Alignment explanation
Indices: 112109--112201 Score: 52
Period size: 11 Copynumber: 8.6 Consensus size: 11
112099 TGAATCGAGC
112109 TCGAGCTTGAA
1 TCGAGCTTGAA
112120 TCGAGC-T---
1 TCGAGCTTGAA
112127 -CGAGCTTGAA
1 TCGAGCTTGAA
**
112137 TCGAGCTCAAA
1 TCGAGCTTGAA
* * *
112148 TTCAAGTTTGAGT
1 -TCGAGCTTGA-A
112161 TCGAGCTTGAA
1 TCGAGCTTGAA
**
112172 TCGAGCTCAAAA
1 TCGAGCT-TGAA
*
112184 TCGAGCTTCAA
1 TCGAGCTTGAA
112195 TCGAGCT
1 TCGAGCT
112202 AGAGTCTCGA
Statistics
Matches: 60, Mismatches: 14, Indels: 16
0.67 0.16 0.18
Matches are distributed among these distances:
6 5 0.08
7 1 0.02
10 1 0.02
11 30 0.50
12 23 0.38
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (11 bp):
TCGAGCTTGAA
Found at i:116851 original size:341 final size:342
Alignment explanation
Indices: 116195--116854 Score: 1076
Period size: 341 Copynumber: 1.9 Consensus size: 342
116185 TTTATTTTTT
* * * * *
116195 ATAATAATAATTTTTTTATAATTTTAAAAATTATAAGTTTCATATATTTTGAAAAAAATATTTTT
1 ATAATAATAAATATTTTAAAATTTTAAAAATTATAAATTTCATATATTTTGAAAAAAATATTTAT
116260 CTTTTAAAATTAATTGTTTAAAAATATAAAAATATTAAAATAAACTTTTAATTACAATTAAGGGA
66 CTTTTAAAATTAATTGTTTAAAAATATAAAAATATTAAAATAAACTTTTAATTACAATTAAGGGA
* * *
116325 TTAAATGAATTATTATTCGTTAATTTTTATTTTTTAACAACATGTAATAATGCTTATTCATTTTT
131 TCAAATGAATTATTATTCATTAATTTTTAATTTTTAACAACATGTAATAATGCTTATTCATTTTT
* * * *
116390 AATAAAATTATTTTTATTTTTGCATTAAAATTACACAATACGTATAATCTAGTATAGGAAAACTT
196 AATAAAATTATTTATATTTTTGCATTAAAATTACACAATACATATAATCTAGTACAGAAAAACTT
* *
116455 TGAGGGTAAGTATTTTAAAATATGAATAATTTTATAAAAGTTTTATAATTAGTATTTCTTTTACA
261 TGAGGGTAAGTATTTTAAAATATAAATAATTTTATAAAAGTTTTATAACTAGTATTTCTTTTACA
116520 AAATGATGATGATGATG
326 AAATGATGATGATGATG
*
116537 ATAATAATAAATATTTTAAAATTTT-AAAATTATAAATTTCATATATTTTTGAAAAAATTA-TTA
1 ATAATAATAAATATTTTAAAATTTTAAAAATTATAAATTTCATATA-TTTTGAAAAAAATATTTA
*
116600 TCTTTTAAAATTAATTGTTTAAAAATATAAAAATATTAAAATAAACTTTTAATTACAATTGAGGG
65 TCTTTTAAAATTAATTGTTTAAAAATATAAAAATATTAAAATAAACTTTTAATTACAATTAAGGG
* *
116665 ATCAAATGAATTATTATTTATTAATTTTTAATTTTTAACAACAAT-TAATAATGTTTATTCATTT
130 ATCAAATGAATTATTATTCATTAATTTTTAATTTTTAACAAC-ATGTAATAATGCTTATTCATTT
* * *
116729 TTAATAAAATTATTTA-ATTTTTTGCATTAAAATTACACAGTACATATGATCTAGTACATAAAAA
194 TTAATAAAATTATTTATA-TTTTTGCATTAAAATTACACAATACATATAATCTAGTACAGAAAAA
116793 CTTTGAGGGTAAGTATTTTAAAATATAAATAATTTTATAAAAGTTTTATAACTAGTATTTCT
258 CTTTGAGGGTAAGTATTTTAAAATATAAATAATTTTATAAAAGTTTTATAACTAGTATTTCT
116855 GTAACCCCCT
Statistics
Matches: 294, Mismatches: 21, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
340 1 0.00
341 256 0.87
342 37 0.13
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (342 bp):
ATAATAATAAATATTTTAAAATTTTAAAAATTATAAATTTCATATATTTTGAAAAAAATATTTAT
CTTTTAAAATTAATTGTTTAAAAATATAAAAATATTAAAATAAACTTTTAATTACAATTAAGGGA
TCAAATGAATTATTATTCATTAATTTTTAATTTTTAACAACATGTAATAATGCTTATTCATTTTT
AATAAAATTATTTATATTTTTGCATTAAAATTACACAATACATATAATCTAGTACAGAAAAACTT
TGAGGGTAAGTATTTTAAAATATAAATAATTTTATAAAAGTTTTATAACTAGTATTTCTTTTACA
AAATGATGATGATGATG
Found at i:118557 original size:29 final size:29
Alignment explanation
Indices: 118524--118690 Score: 196
Period size: 29 Copynumber: 5.8 Consensus size: 29
118514 ATCACCTTTT
* *
118524 TTTTAAAAATAATTACCAAAATATCACCA
1 TTTTAAAAATAATTACCAAAATGTCATCA
*
118553 TTTTAAAAATAATTACCAAAATATCATCA
1 TTTTAAAAATAATTACCAAAATGTCATCA
* * *
118582 TTTTACAAATAATTCCCAAAATGTCATTA
1 TTTTAAAAATAATTACCAAAATGTCATCA
*
118611 TTTTAAAAATAATTACCAAAATGTCA-CTG
1 TTTTAAAAATAATTACCAAAATGTCATC-A
* * *
118640 TTTTAAAAA-ATTTCCCCAAATGTCATC-
1 TTTTAAAAATAATTACCAAAATGTCATCA
* *
118667 GTTTAAAAATAATTACCAGAATGT
1 TTTTAAAAATAATTACCAAAATGT
118691 TACTTTTTTT
Statistics
Matches: 118, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
27 8 0.07
28 23 0.19
29 87 0.74
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.35
Consensus pattern (29 bp):
TTTTAAAAATAATTACCAAAATGTCATCA
Found at i:118644 original size:58 final size:57
Alignment explanation
Indices: 118524--118724 Score: 208
Period size: 58 Copynumber: 3.5 Consensus size: 57
118514 ATCACCTTTT
* * * *
118524 TTTTAAAAATAATTACCAAAATATCACCATTTTAAAAATAATTACCAAAATATCA-TCA
1 TTTTAAAAATAATTCCCAAAATGTCA-TATTTTAAAAATAATTACCAAAATGTCACT-A
* *
118582 TTTTACAAATAATTCCCAAAATGTCATTATTTTAAAAATAATTACCAAAATGTCACTG
1 TTTTAAAAATAATTCCCAAAATGTCA-TATTTTAAAAATAATTACCAAAATGTCACTA
* * ** * * *
118640 TTTTAAAAA-ATTTCCCCAAATGTCATCGTTTAAAAATAATTACCAGAATGTTACTTT
1 TTTTAAAAATAATTCCCAAAATGTCATATTTTAAAAATAATTACCAAAATGTCAC-TA
*
118697 TTTTAAAAAAAAAATTCCCAAAATGTCA
1 TTTT--AAAAATAATTCCCAAAATGTCA
118725 CTGGGTCGGT
Statistics
Matches: 121, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
56 25 0.21
57 19 0.16
58 57 0.47
59 6 0.05
60 14 0.12
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (57 bp):
TTTTAAAAATAATTCCCAAAATGTCATATTTTAAAAATAATTACCAAAATGTCACTA
Found at i:118661 original size:28 final size:29
Alignment explanation
Indices: 118524--118726 Score: 187
Period size: 29 Copynumber: 7.0 Consensus size: 29
118514 ATCACCTTTT
* * *
118524 TTTTAAAAATAATTACCAAAATATCACCA
1 TTTTAAAAATAATTCCCAAAATGTCACTA
* *
118553 TTTTAAAAATAATTACCAAAATATCA-TCA
1 TTTTAAAAATAATTCCCAAAATGTCACT-A
* *
118582 TTTTACAAATAATTCCCAAAATGTCATTA
1 TTTTAAAAATAATTCCCAAAATGTCACTA
* *
118611 TTTTAAAAATAATTACCAAAATGTCACTG
1 TTTTAAAAATAATTCCCAAAATGTCACTA
* * *
118640 TTTTAAAAA-ATTTCCCCAAATGTCA-TC
1 TTTTAAAAATAATTCCCAAAATGTCACTA
* * * * *
118667 GTTTAAAAATAATTACCAGAATGTTACTTT
1 TTTTAAAAATAATTCCCAAAATGTCAC-TA
*
118697 TTTTAAAAAAAAAATTCCCAAAATGTCACT
1 TTTT--AAAAATAATTCCCAAAATGTCACT
118727 GGGTCGGTCA
Statistics
Matches: 143, Mismatches: 24, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
27 9 0.06
28 24 0.17
29 85 0.59
30 5 0.03
31 1 0.01
32 19 0.13
ACGTcount: A:0.45, C:0.16, G:0.04, T:0.35
Consensus pattern (29 bp):
TTTTAAAAATAATTCCCAAAATGTCACTA
Found at i:118706 original size:87 final size:88
Alignment explanation
Indices: 118521--118727 Score: 240
Period size: 87 Copynumber: 2.4 Consensus size: 88
118511 AATATCACCT
* ** *
118521 TTTTTTTAAAAATAATTACCAAAATATCACCATTTTAAAAATAATTACCAAAATATCATCATTTT
1 TTTTTTTAAAAATAATTACCAAAATGTCACTGTTTTAAAAATAATTACCAAAATATCATCAGTTT
* *
118586 ACAAATAATTCCCAAAATGTCA-
66 AAAAATAATTACCAAAATGTCAC
* * * * *
118608 TTATTTTAAAAATAATTACCAAAATGTCACTGTTTTAAAAA-ATTTCCCCAAATGTCATC-GTTT
1 TTTTTTTAAAAATAATTACCAAAATGTCACTGTTTTAAAAATAATTACCAAAATATCATCAGTTT
* *
118671 AAAAATAATTACCAGAATGTTAC
66 AAAAATAATTACCAAAATGTCAC
* *
118694 TTTTTTTAAAAAAAAAATTCCCAAAATGTCACTG
1 TTTTTTT--AAAAATAATTACCAAAATGTCACTG
118728 GGTCGGTCAA
Statistics
Matches: 101, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
85 21 0.21
86 20 0.20
87 37 0.37
88 23 0.23
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.36
Consensus pattern (88 bp):
TTTTTTTAAAAATAATTACCAAAATGTCACTGTTTTAAAAATAATTACCAAAATATCATCAGTTT
AAAAATAATTACCAAAATGTCAC
Found at i:122755 original size:22 final size:22
Alignment explanation
Indices: 122730--122779 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
122720 ATGGACGGGC
122730 TCGTCGGTCGCCGCATCTACAG
1 TCGTCGGTCGCCGCATCTACAG
* * * *
122752 TCGTCAGTCGTCGCGTCTATAG
1 TCGTCGGTCGCCGCATCTACAG
122774 TCGTCG
1 TCGTCG
122780 ATCGATAATG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.12, C:0.32, G:0.28, T:0.28
Consensus pattern (22 bp):
TCGTCGGTCGCCGCATCTACAG
Found at i:123290 original size:14 final size:14
Alignment explanation
Indices: 123271--123315 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
123261 ATCGAATCAT
*
123271 TTAACATGTATATA
1 TTAACATATATATA
123285 TTAACATATATATA
1 TTAACATATATATA
*
123299 TATATATATATATATA
1 T-TA-ACATATATATA
123315 T
1 T
123316 ATATAAGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 14 0.52
15 2 0.07
16 11 0.41
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (14 bp):
TTAACATATATATA
Found at i:123295 original size:2 final size:2
Alignment explanation
Indices: 123290--123320 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
123280 ATATATTAAC
123290 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
123321 AGTTTTTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:127555 original size:29 final size:29
Alignment explanation
Indices: 127493--127694 Score: 178
Period size: 29 Copynumber: 7.0 Consensus size: 29
127483 TATAGTCGAA
* **
127493 AATTACAAAAATATCACCTT-TTTTTTAAAT
1 AATTACCAAAATATCA--TTGTTTTAAAAAT
127523 AATTACCAAAATATCATTGTTTTAAAAAT
1 AATTACCAAAATATCATTGTTTTAAAAAT
*
127552 AATTACCAAAATATCATTGTTTTACAAAT
1 AATTACCAAAATATCATTGTTTTAAAAAT
* * *
127581 AATTCCCAAATTAGC-TTCGTTTTAAAAAT
1 AATTACCAAAATATCATT-GTTTTAAAAAT
* * *
127610 AATTACCAGAATATCAATGTTTTTTAAAA-
1 AATTACCAAAATATCATTG-TTTTAAAAAT
* * * *
127639 AATTCCCAAAATGTGATCG-TTTAAAAAT
1 AATTACCAAAATATCATTGTTTTAAAAAT
* * * *
127667 AATTACCAGAATGTCACTATTTTAAAAA
1 AATTACCAAAATATCATTGTTTTAAAAA
127695 AAATCCCAAA
Statistics
Matches: 139, Mismatches: 27, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
27 7 0.05
28 17 0.12
29 91 0.65
30 24 0.17
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.37
Consensus pattern (29 bp):
AATTACCAAAATATCATTGTTTTAAAAAT
Found at i:127697 original size:58 final size:60
Alignment explanation
Indices: 127541--127708 Score: 204
Period size: 58 Copynumber: 2.9 Consensus size: 60
127531 AAATATCATT
* * * * *
127541 GTTTTAAAAATAATTACCAAAATATCATTGTTTTACAAATAATTCCC-AAAT-TAGCTTC
1 GTTTTAAAAATAATTACCAGAATATCAATGTTTTAAAAAAAATTCCCAAAATGTAGCATC
**
127599 GTTTTAAAAATAATTACCAGAATATCAATGTTTTTTAAAAAATTCCCAAAATGT-G-ATC
1 GTTTTAAAAATAATTACCAGAATATCAATGTTTTAAAAAAAATTCCCAAAATGTAGCATC
* * *
127657 G-TTTAAAAATAATTACCAGAATGTCACTATTTTAAAAAAAA-TCCCAAAATGT
1 GTTTTAAAAATAATTACCAGAATATCAATGTTTTAAAAAAAATTCCCAAAATGT
127709 CAATGGGTCG
Statistics
Matches: 97, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
56 11 0.11
57 35 0.36
58 45 0.46
59 5 0.05
60 1 0.01
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (60 bp):
GTTTTAAAAATAATTACCAGAATATCAATGTTTTAAAAAAAATTCCCAAAATGTAGCATC
Found at i:127734 original size:18 final size:18
Alignment explanation
Indices: 127707--127746 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
127697 ATCCCAAAAT
*
127707 GTCAATGGGTCGGGTCAG
1 GTCAACGGGTCGGGTCAG
*
127725 GTCAACGGGTCGGGTCTG
1 GTCAACGGGTCGGGTCAG
127743 GTCA
1 GTCA
127747 GACCGGTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.15, C:0.20, G:0.42, T:0.23
Consensus pattern (18 bp):
GTCAACGGGTCGGGTCAG
Found at i:128714 original size:26 final size:26
Alignment explanation
Indices: 128675--128724 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
128665 TATTCAATAT
**
128675 TTTTTCAAAATATATGAAATTTATAA
1 TTTTTCAAAATATAAAAAATTTATAA
128701 TTTTT-AAAATTATAAAAAATTTAT
1 TTTTTCAAAA-TATAAAAAATTTAT
128725 TATTATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (26 bp):
TTTTTCAAAATATAAAAAATTTATAA
Found at i:130436 original size:31 final size:30
Alignment explanation
Indices: 130340--130446 Score: 91
Period size: 31 Copynumber: 3.6 Consensus size: 30
130330 ATAAAAATTG
130340 AAAA-AAATGAACAGTTATAATAAATTTCC
1 AAAAGAAATGAACAGTTATAATAAATTTCC
* * * *
130369 AAAAG-ATTTATA-A-TCA-AATCAAATTATGC
1 AAAAGAAATGA-ACAGTTATAAT-AAATT-TCC
130398 -AAAGAAATGAACAGTTATAATAAATTTCC
1 AAAAGAAATGAACAGTTATAATAAATTTCC
*
130427 AAAATGAAATGAACGGTTAT
1 AAAA-GAAATGAACAGTTAT
130447 TCGTACAATA
Statistics
Matches: 59, Mismatches: 9, Indels: 18
0.69 0.10 0.21
Matches are distributed among these distances:
27 3 0.05
28 12 0.20
29 16 0.27
30 11 0.19
31 17 0.29
ACGTcount: A:0.52, C:0.09, G:0.10, T:0.28
Consensus pattern (30 bp):
AAAAGAAATGAACAGTTATAATAAATTTCC
Found at i:130513 original size:21 final size:21
Alignment explanation
Indices: 130489--130528 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
130479 TTAAAAAGGT
* *
130489 AAAATTTAAAAATGATTAATA
1 AAAATTGAAAAATAATTAATA
130510 AAAATTGAAAAATAATTAA
1 AAAATTGAAAAATAATTAA
130529 CGTCTATAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (21 bp):
AAAATTGAAAAATAATTAATA
Found at i:133834 original size:13 final size:14
Alignment explanation
Indices: 133799--133838 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
133789 TAGACTTTGT
*
133799 TCGAGTTGACTCAA
1 TCGAGTTAACTCAA
*
133813 TCAAGTTAACTCAA
1 TCGAGTTAACTCAA
133827 T-GAGTTAACTCA
1 TCGAGTTAACTCA
133839 GCTTGACCCG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (14 bp):
TCGAGTTAACTCAA
Found at i:138985 original size:21 final size:21
Alignment explanation
Indices: 138961--139004 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
138951 TCGTAATAGC
*
138961 AATCCTA-ATATATCTGATTAT
1 AATCCTATATATAT-TCATTAT
*
138982 AATCGTATATATATTCATTAT
1 AATCCTATATATATTCATTAT
139003 AA
1 AA
139005 CAATACTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.43
Consensus pattern (21 bp):
AATCCTATATATATTCATTAT
Found at i:139623 original size:134 final size:135
Alignment explanation
Indices: 139383--146779 Score: 5724
Period size: 134 Copynumber: 54.9 Consensus size: 135
139373 TTCACTTTAT
* * * * * * * *
139383 TGCTCTTCAGGGAAGGTTAAACCAAACT-TGATTTGCTTCGTTGCTCTTCAGGAATACCAAGTTT
1 TGCTCTTCAGGGAAGATTGAATCGAA-TATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCT
* * * * *
139447 GAAA-ATAGA-AGA-ATCTGCTCCACTACTCTTTAGGGGAGATTAGACTTC-CGAAAACTTTAAT
65 GAAAGA-AGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGAC-TCGAGAAAATTTTGAT
*
139508 CCACTCCGC
127 CCACTTCGC
* * * * *
139517 TGCTCTTCAGAGAAGATTGAATCGAATGTGATTTGATTCGCTGCTCTTCAGGAAGACCAAATATT
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * *
139582 AAAGAAG-GCATATC-GACTCCACTACTCTTTAGGGGAGATTAGACTCGAGAAAACTTTGATTCA
66 AAAGAAGAGAATATCTG-CTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
*
139645 CTTTGC
130 CTTCGC
* * * *
139651 TACTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGTTGCTCTTCAGGAATACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * ** **
139716 AAAAAAGAAGAAT-T-TGTTCCACTACAATTTAGGGGAGGTCAGACTC-A-AATTTTTTTTGATC
66 AAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAA--AATTTTGATC
139777 CACTTCGC
128 CACTTCGC
* * ** * * * * * * *
139785 TGATCTTCAGCGAAGATAAAATCGAAAATAATTTGTTTCGCTACTCTTCAAGAAGAACAAATATG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * **
139850 AAAGAAGA-AGA-ATCTGCTCCACTACACTTTAGGGGAGGTTAGACTTGGGAAAATTTTGATTTA
66 AAAGAAGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
139913 CTTCGC
130 CTTCGC
* * * * *
139919 TGCTCTTCAGGTAAGATTGAATCGAATATGATTTACTTTAG-TGCTTTTTAGGAAGACCAAATCT
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGC-TTCGCTGCTCTTCAGGAAGACCAAATCT
* * * * * *
139983 GAAAG-A-AGAATAATCTGCTCTACTACTGTTTAGGGGAGGTCATACTCAAGAATATTTTGATTC
65 GAAAGAAGAGAAT-ATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCC
140046 ACTTCGC
129 ACTTCGC
* * *
140053 TGCTCTTCAGGGAAGATTGAATCGAATGTGATTTGCTTTGTTGCTCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* *
140118 AAAGAAGA-AGA-ATCTGCTCCACTAGTTTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
66 AAAGAAGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
*
140181 CTTCGT
130 CTTCGC
* * * * *
140187 TGCTCTTAAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCTCCTCAAGAAGACCAAATCTA
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * *
140252 AAAGAAGAAGAAT-T-TGCTCCACTACTCTTTAGGGGAGGTAAAACTTGAGAAAATTTTGATTCA
66 AAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
*
140315 CTTCAC
130 CTTCGC
* * * * * * * * * **
140321 TGCTCTTCAGGAAGACCAAATCTGAA-AGAAGAAGAATCTGCTTCACTAG-TGTTTATGGGAGGT
1 TGCTCTTCAGG--GA--AGAT-TGAATCGAATATG-ATTTGCTTCGCT-GCTCTTCA-GGAAGAC
* * * ** * * * * * ** * *
140384 CAGACTCGAGAAAAAATTG-AT-TC-ACTTCACTGCTCTTCAGGGAACATTA-AATC----AAA-
58 CA-AATC-TGAAAGAAGAGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAAT
* ***
140440 TATGATTTGCTTCGC
121 TTTGATCCACTTCGC
* ** * * * * * ** * * * ***
140455 TGCTCTTCAGGAAGACCAAATCT-AAAAGAAGAAGAATATGCTCCACTATTTTTTATGGGAGGTG
1 TGCTCTTCAGG--GA--AGAT-TGAATCGAATATG-ATTTGCTTCGCTGCTCTTCA-GGAAGACC
* * * * * * * * ** * *
140519 AGA-CT-CAAGAA-A-AA-ACTTTGATTCACTTCGTTGCTCATCAGGGAATAT-TGAATC--G--
59 AAATCTGAAAGAAGAGAATA-TCTGCTCCACTAC--T-CT--TTAGGGGAGGTCAGACTCGAGAA
* *** *
140574 AA-TGTGATTTTCTTCAC
118 AATTTTGATCCACTTCGC
* * ** * ** * * * **
140591 TACTCTTCAGGAAGACCAAATCTGAAAGAGAAGAAAATATT-C--CGCTACTCTTTCGGGGAGGT
1 TGCTCTTCAGG--GA--AGAT-TG-AATCGAATATGAT-TTGCTTCGCTGCTC-TTCAGGAAGAC
* * * * * * * * *
140653 CAGA-CT-CAAGAA-A-AACT-T-TGATTCACTTCTATGCTCTTCAGGGAAGAT-TGAATC--GA
58 CAAATCTGAAAGAAGAGAA-TATCTG-CTC-C-ACTA--CTCTTTAGGGGAGGTCAGACTCGAGA
* *** *
140709 ACA---TGATTTGCTTTGC
117 AAATTTTGATCCACTTCGC
* * * * * * * * * * * * *
140725 TGCTCCTCAAGAAGACCAAATCTGAA-AGAAGAAGAATCTGC-TCTACTACTGTTTAGGGGAGGC
1 TGCTCTTC-AG-GGA--AGAT-TGAATCGAATATG-ATTTGCTTC-GCTGCTCTTCA-GGAAGAC
* * * * * * * *
140788 CAGAGT-TG--AG-A-A-AAT-TTTGATCCACTTCGCTGCTCTTCGGGGAAGAT-TGAATC--GA
58 CA-AATCTGAAAGAAGAGAATATCTGCTCCAC-T-ACT-CT-TTAGGGG-AGGTCAGACTCGAGA
* ***
140843 ACA---TGATTTGCTTCGC
117 AAATTTTGATCCACTTCGC
* * ** * *
140859 TGCTCTTCAGGGAAGATTGAATAGAATGTGATTTGCTTCGCTATTCTTTAGGAAGACCAAATCTA
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * *
140924 AAAGAAGA-AGA-ATCTGTTCCACTACTGTTTAGGGGAGGTCAGATTCGAGAAAATTTTGATTCA
66 AAAGAAGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
**
140987 CTTTAC
130 CTTCGC
* * * *
140993 TGCTCTTTAGGGAATATTGAATCGAACATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTA
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * * * *
141058 AAAG-A-AGAATAATATGCTCCACTATTTTTTAGGGGAGGTGAGACTTGAGAAAAAACTTTGATT
66 AAAGAAGAGAAT-ATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG--AAAATTTTGATC
*
141121 CACTTCGT
128 CACTTCGC
* * *
141129 TGCACTTCAGGGAAGATTGAATCGAATGTGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * * *
141194 AAAGGAGAAGAATA--TGTTCCACTACTTTTTAGGGGAGGTCAGACTCTAGAAAACTTTGATTCA
66 AAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
*
141257 CTTCAC
130 CTTCGC
* * * * **
141263 TGCTCTTAAGGTAAGATTGATTCGAACACAATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
*
141328 AAAGAAGA-AGA-ATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCTA
66 AAAGAAGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
141391 CTTCGC
130 CTTCGC
* * * *
141397 TGCTCTTCAGGGAAGACTGAATCGAACATAATTTGCTTCGTTGCTCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * *
141462 AAAGAAGAAGAATA--TGCTCTACTACTATTTAGGGGAGGTTAGACTCAAGAAAATTTTGATCCA
66 AAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
*
141525 CTTTGC
130 CTTCGC
* ** * * *
141531 TTCTCTTCAGGGAATTTTGAATCGAACATGATTTGCTTCGCTGCTCCTCAAGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * *
141596 AAAGAAGA-AGA-ATCTGCTCAACTACTATTTAGGGGAGGTCAGACTCGAGAAAATTTTGATTCA
66 AAAGAAGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
*
141659 CTTCAC
130 CTTCGC
* * *
141665 TGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCTTTTCAGGAAGACCAAATTTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * * * * * *
141730 AAA-AAAAGAAAAATTTGCTCCACTAATTTTTAGGGGAGGTGAGGCTCGAGAAAACACTTTGATT
66 AAAGAAGAG-AATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG-AAA-ATTTTGATC
* *
141794 CACTTTGT
128 CACTTCGC
* * * * *
141802 TGCTCTTGAGGGAAGATTGAATCGAATGTGATTTGCTTCACTACTCTTCAGGAAGACCAAATATG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * * * * ** *
141867 AAAGGAGAAGAATA--TGTTCCGCTCCTCTTTAGGGTAGGAT-AGACTTGAGAAAAACTTAAATT
66 AAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGG-TCAGACTCGAG-AAAATTTTGATC
*
141929 CACTTCGA
128 CACTTCGC
* * * * * *
141937 TGCTCTTC-GGAGAAGATTGAGTCGAACATGATTTTCTTCGCTGATCCTCAAGAAGACCAAATCT
1 TGCTCTTCAGG-GAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCT
* *
142001 GAAAGAAGAAGAATA--TGCTCCATTACTGTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCC
65 GAAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCC
142064 ACTTCGC
129 ACTTCGC
* * * *
142071 TGCTCTTCAAGGATGATTGAATCGAACATGATTTGCTTCGTTGCTCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * * * *
142136 AAAGAAGAAGAATA--TGTTCCACTAATGTTTAGGGGATGTCAGACTCTAGAAAATTTTGATTCT
66 AAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
*
142199 CTTCAC
130 CTTCGC
* * *
142205 TGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTCCTCTTCAAGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * * *
142270 AAAGAAGA-AGA-ATCTACTCCACTAATTTTTAGGGGAGGTGAGACTCGAGAAAAAACTTTGATT
66 AAAGAAGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG--AAAATTTTGATC
*
142333 CAC-TCAGT
128 CACTTC-GC
* *
142341 TGCTCTTCAGGGAAGATTGAATCGAATGTGATTTGCTTCAG-TGCTCTTCAGGAAGACCAAATAT
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTC-GCTGCTCTTCAGGAAGACCAAATCT
* * * * **
142405 GGAAAG-AGAAGAATA--TGTTCCGCTACTCTTTAAGGGAGATCAGACTCGAGAAAAACATTGAT
65 -GAAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG-AAAATTTTGAT
* *
142467 TCACTTCAC
127 CCACTTCGC
* *
142476 TGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTTCTCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * *
142541 AAA-AAAAAAATAAGAATCTGCTCCACTACTTTTTAGGGGAGGTCAGACTCAAGAAAATTTTGAA
66 AAAGAAGAGAAT----ATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGAT
**
142605 CCACTTTAC
127 CCACTTCGC
* * *
142614 TGCTCTTCAGGGAATATTGAATCGAACATGATTTGCTTCGCTGCTCTTCAGGAAGA-CAAATATG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * *
142678 AAAGAAGA-AGA-ATCTGCTCCACTAATCTTTAGGGGAGGTCAGACTCTAAAAAATTTTGATCCA
66 AAAGAAGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
142741 CTTCGC
130 CTTCGC
* *
142747 TGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTTC-CTGCTCCTT-AAGAAGACCAAATC
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGC-TTCGCTGCT-CTTCAGGAAGACCAAATC
* ** ** * * * * *
142810 TGAAAGAAGA-AGA-ATCTACTTTACTGTTGTTTAGGGGATGTTAGACTCGATAAAATTTTGATT
64 TGAAAGAAGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATC
*
142873 CACTTCAC
128 CACTTCGC
* *
142881 TGCTCTTCAGGGAAGATTAAATCGAACATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * * * * *
142946 AAAG-A-AGAATAATCTGCTCCACTATTTTTTAGGGGAGCTGAGATTCGAGAAAAAACTTTAATT
66 AAAGAAGAGAAT-ATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG--AAAATTTTGATC
*
143009 CACTTCGT
128 CACTTCGC
* * * *
143017 TGCTCTTTAGGGAAGATTGAATCGAATGTGATTTGCTTCACTGCTCTTCAGGACA-ACCAAATAT
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGA-AGACCAAATCT
* * * * * * *
143081 GAAAGGAGAAGAATA--TGTTCCGCTACTCTTTAGGGGATGTCAGTCTCGAGAAAAACTTTGATT
65 GAAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG-AAAATTTTGATC
**
143144 CACTTCAA
128 CACTTCGC
* * * * * *
143152 TGCTCTTC-GTAGAAGATTGAGTCGAACATGATTTGCTTCAG-TGCTCCTCAAGATGACCAAATC
1 TGCTCTTCAG-GGAAGATTGAATCGAATATGATTTGCTTC-GCTGCTCTTCAGGAAGACCAAATC
* *
143215 TGAAAAAAGAAGAATA--TGCTCCACTACTTTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATC
64 TGAAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATC
*
143278 CACTTCGT
128 CACTTCGC
* * * * * *
143286 TGCTCTTCAAGGATGATTGAATCGAATATTATTTGCATCGCTCCTCTTCAGGAAGACTAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * *
143351 AAAGAAGAAGAATA--TGTTCCACTACTGTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATTCA
66 AAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
*
143414 CTTCAC
130 CTTCGC
* *
143420 TGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTTGCTGCTCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * *
143485 AAAGAAGA-AGA-ATCTGCTCCACTATTTTTTAGGGGAGGTGAGACTCGAGGAAAAACTTTGATT
66 AAAGAAGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGA-G-AAAATTTTGATC
* *
143548 CACTTAGT
128 CACTTCGC
* * * **
143556 TGCTCTTCAGGGAAGATTGAATCGAATGTGATTTGCTTCACTGCTCTTCAGGAAGACCGAATAAG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAAT-CT
* * * * *
143621 GAAAG-AGAAGAATA--TGTTCCGCTACTCTTTAGGGGAGGTCAGACTCAAGAAAAACTTTGATT
65 GAAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG-AAAATTTTGATC
*
143683 CACTTCAC
128 CACTTCGC
* * *
143691 TGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTTGCTTCTCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * *
143756 AAA-AAAAAAATAAGAATCTGCTCCACTACTTTTTAGGGGAGGTCAGACTCGAGAAAATTTTGAA
66 AAAGAAGAGAAT----ATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGAT
**
143820 CCACTTTAC
127 CCACTTCGC
* * * *
143829 TGCTCTTCAGTGAATATTGAATCGAACATGATTTGCTTCGCTGCTCTTTAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* **
143894 AAAGAAGAAGAAT-T-TGCTCCACTAATCTTTAGGGGAGGTCAGACTCTTGAAAATTTTGATCCA
66 AAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
143957 CTTCGC
130 CTTCGC
* * * *
143963 TGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCCCTGCTCCTCAAGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* ** * * * *
144028 AAAGAAGA-AGA-ATCTACTTTACTGCTGTTTAGGGGAGGTTAGACTCGAGAAAATTTTGATTCA
66 AAAGAAGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
*
144091 CTTCAC
130 CTTCGC
* * * *
144097 TGCTATTCAGGGAAGATTAAATCGAACATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATTTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * * * *
144162 AAA-TA-AGAATAATCTGCTCCACTATTGTTTAGGGGAGGTGAGATTCGAGAAAAAACTTTGATT
66 AAAGAAGAGAAT-ATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG--AAAATTTTGATC
*
144225 CACTTCGT
128 CACTTCGC
* * * * *
144233 TGCTCTTCAGGGAAGATTGAATCGAATGTGATTTGCTTCACTGCTCTTAAGGACGACCAAATATG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * * * *
144298 AAAGGAGAAGAATA--TGTTTCGCTACTCTTTAGGGGAGGTTAGACTCGAGAAAAACTTTGATTC
66 AAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG-AAAATTTTGATCC
*
144361 ACTTCGA
129 ACTTCGC
* * * * * * *
144368 TGCTCTTC-GTAGAATATTGAGTCGAACATGATTTGCTTCGCTGCTCCTCAAGATGACCAAATCT
1 TGCTCTTCAG-GGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCT
* * * * *
144432 GAAAGAAGA-AGA-ATCTGCTCCACTACTGTTTATGAGAGGTTAGACTCGAGAAAATTTTGATCA
65 GAAAGAAGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCC
144495 ACTTCGC
129 ACTTCGC
* * * *
144502 TACTCTTCAAGGATGATTGAATCGAACATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * *
144567 AAAG-A-AGAATAATATGTTCCACTACTGTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATTCA
66 AAAGAAGAGAAT-ATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
**
144630 CTTTAC
130 CTTCGC
*
144636 TGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * * *
144701 AAAGAAGA-AGA-ATCTGCTCCACTATTTTTTAGGGGAGGTGAGACTTGAGAAAAAACTTTGATT
66 AAAGAAGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG--AAAATTTTGATC
* *
144764 CACTTAGT
128 CACTTCGC
* * * * * * *
144772 TACTCTTTAAGGAAGATTGAATCGAATGTTATTTGCTTCACTGCTCTTCAGGAAGACCAAATATA
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCT-
* * * * * * *
144837 GAAAG-AGAAGAATA--TGTTCCGCTACTCTTTAGGGAAGGTGAGACTCAAGAAAAACTTTGATT
65 GAAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG-AAAATTTTGATC
*
144899 CACTTCAC
128 CACTTCGC
* ** * * *
144907 TACTCTTCAGGGAAGATTGAATCGAACGTGATTTGTTTCGCTTCTCTTCAGGAAGA-CAAATTTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * * ** *
144971 AAA-AAAATAAGAATCTGCTCCACTACTTTTTAGGGGAGGTCAGACTTGAGAAAAAATTGAACCA
66 AAAGAAGAGAA-TATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
**
145035 CTTTAC
130 CTTCGC
* * **
145041 TGCTCTTCAGGGAATATTGAATCGAACATGATTTGCTTCGCTGCTCTTCAGGAAGATTAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * *
145106 AAAGAAGAAGAAT-T-TGCTCCACTAATCTTTAGGGGAGGTAAGACTCCAAAAAAGTTTGATCCA
66 AAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCA
145169 CTTCGC
130 CTTCGC
* * * * * * * *
145175 TACTCTTCAGGAAATATTTAATCGAACATGACTTGCTTTC-CTGCTCCTCAAGAAGACCAAATCT
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGC-TTCGCTGCTCTTCAGGAAGACCAAATCT
* ** ** * * *
145239 GAAAG-A-AGAATAATCTACTTTACTGTTATTTAGGGGAGGTTAGACTCGAGAAAATTTTGATTC
65 GAAAGAAGAGAAT-ATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCC
***
145302 ACTTTAT
129 ACTTCGC
* * * *
145309 TGCTCTTCAGGGAAGATTAAATCAAACATTATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * *
145374 AAAGAAGA-AGA-ATCTGCTCCACTA-TTTTTAGGGGAGGTGAGATTCGAGAAAAAAACTTTGAT
66 AAAGAAGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG---AAAATTTTGAT
* * *
145436 TCACGTCGT
127 CCACTTCGC
* * * *
145445 TGCTCTTCATGGAAGATTGAATCGAATGTGATTTGCTTCACTACTCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * * * *
145510 AATGTAGAAGAATA--TGCTCCACTACTCTTTAGGGGATGTTAGATTCGAGAAAAACTTTGATTC
66 AAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG-AAAATTTTGATCC
*
145573 ACTTCGA
129 ACTTCGC
* * * * * *
145580 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTTCTTCACTGCTATCCAGGAAGACAAAATATG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * *
145645 AAA-AATTAAGAAT-T-TGCTCCGCTACTCTTTAGGGGAGGTCAGACTCGAGAAAAACTTTGATT
66 AAAGAA--GAGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG-AAAATTTTGATC
*
145707 CACTTCGA
128 CACTTCGC
* * * ** *
145715 TGCTCTTCAGGAAAGATTGAATCAAATGTGATTTGCTTCATTGCTCTTCCGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
** ** * * * * * *
145780 AAAGAAGA-AGA-ATCTATTCTGCTACTCTTTAGGGGATGTTAGACTAGAGAAAAACTATGATTC
66 AAAGAAGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG-AAAATTTTGATCC
*
145843 ACTTCCC
129 ACTTCGC
* * * * * * * * *
145850 TGCTCTTCAGGGATGATTTAATCGAATGTGATTTACTGCACTGCTATTTAGGTAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * * * *
145915 AAAGAAGAAGAATA--TGCTCCTCTATTCTTTAAGGGTGGTCATACTCGAGAAAAAATTTGATTC
66 AAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG-AAAATTTTGATCC
*
145978 ACTTCAC
129 ACTTCGC
* * * * * * * * *
145985 TTCTCTTCAGGAAAGATTAAATTGAATGTTATTTACTTCACTGCTCTTCAGGAGGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* ** * * *
146050 AAAG-A-AG-A-ATCTACTCTGCTACTCTTTAGGGGAGGTCATACTCGAGAAAAACTTTGAT-TA
66 AAAGAAGAGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG-AAAATTTTGATCCA
146110 CTTCGC
130 CTTCGC
* * * ** * * * *
146116 TACTCTTCAGAGAAGATTGAATCGAATATAATTTGCTTAACTACTCTTCTGGAATACCAAATATG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * * *
146181 AAAGAAGA-AGA-ATCTTCTCCGCTACTCTTTACGGGAGGTCAGACTCGAGAAAAACTTTAATTC
66 AAAGAAGAGA-ATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG-AAAATTTTGATCC
*
146244 ACTTCAC
129 ACTTCGC
* * * * *
146251 TGTTCTTCAGGGAAGATTGAATCGAATGTGATTTTCTTCACTTCTCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * * *
146316 -AA-AAG-GAAGAATCTGCTCCGCTACTATTTAGGGGAGGTCAGAATCGAGAAAAACTTTGATTC
66 AAAGAAGAGAA-TATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG-AAAATTTTGATCC
*
146378 ACTTCAC
129 ACTTCGC
* * * *
146385 TGCTCTTCAGGGAAGATTAAATCGAATGTGATTTGCTT-GACTACTCTTCCGGGAA-ACCAAATC
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCG-CTGCTCTT-CAGGAAGACCAAATC
* * * * ** * *
146448 TAAAAGATGAAGAAT-T-AGCTCTC-TTTTTCTTTAGGGGAGGTCAGAATCGAGAAAAACTTTGA
64 TGAAAGAAG-AGAATATCTGCTC-CACTACTCTTTAGGGGAGGTCAGACTCGAG-AAAATTTTGA
*
146510 TTCACTTCGC
126 TCCACTTCGC
* * * ** * * * *
146520 TTCTCTTCAGGGAATATTTAATTAAATGTGATTTACTTCACTGATCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
** * *
146585 AAAGAAGAAGAATA--TGCTCCGTTACTCTTTAGGGGAGGTCAGACTCGAGAAAAACTTTGATTC
66 AAAGAAG-AGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAG-AAAATTTTGATCC
*
146648 ACTTTGC
129 ACTTCGC
* * * * * *
146655 TGCTCTTCAAGGAAGATTGAATCGAATGTAATTTGGTTCACAGCTCTTCAGGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
* * * * *
146720 AAAGAAGA-AAAATATGCTCCGCTACTCTTTAAGGGAGGTCAGTCTCGAGAAAATTTTGAT
66 AAAGAAGAGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGAT
146780 TCATTCTACC
Statistics
Matches: 6006, Mismatches: 992, Indels: 530
0.80 0.13 0.07
Matches are distributed among these distances:
127 2 0.00
128 11 0.00
129 28 0.00
130 19 0.00
131 84 0.01
132 87 0.01
133 218 0.04
134 2860 0.48
135 1397 0.23
136 825 0.14
137 148 0.02
138 188 0.03
139 99 0.02
140 31 0.01
141 4 0.00
142 5 0.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (135 bp):
TGCTCTTCAGGGAAGATTGAATCGAATATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG
AAAGAAGAGAATATCTGCTCCACTACTCTTTAGGGGAGGTCAGACTCGAGAAAATTTTGATCCAC
TTCGC
Found at i:140338 original size:93 final size:93
Alignment explanation
Indices: 140222--140424 Score: 280
Period size: 93 Copynumber: 2.2 Consensus size: 93
140212 ACATGATTTG
* * * *
140222 CTTCGCTGCTCCTCAAGAAGACCAAATCTAAAAGAAGAAGAATTTGCTCCACTACTCTTTAGGGG
1 CTTCACTGCTCTTCAGGAAGACCAAATCTAAAAGAAGAAGAATCTGCTCCACTACTCTTTAGGGG
* **
140287 AGGTAAAACTTGAGAAAATTTTGATTCA
66 AGGTAAAACTCGAGAAAAAATTGATTCA
* * * * *
140315 CTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTTCACTAGTGTTTATGGG
1 CTTCACTGCTCTTCAGGAAGACCAAATCTAAAAGAAGAAGAATCTGCTCCACTACTCTTTAGGGG
* *
140380 AGGTCAGACTCGAGAAAAAATTGATTCA
66 AGGTAAAACTCGAGAAAAAATTGATTCA
140408 CTTCACTGCTCTTCAGG
1 CTTCACTGCTCTTCAGG
140425 GAACATTAAA
Statistics
Matches: 96, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 96 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (93 bp):
CTTCACTGCTCTTCAGGAAGACCAAATCTAAAAGAAGAAGAATCTGCTCCACTACTCTTTAGGGG
AGGTAAAACTCGAGAAAAAATTGATTCA
Found at i:140489 original size:227 final size:227
Alignment explanation
Indices: 140094--140517 Score: 677
Period size: 227 Copynumber: 1.9 Consensus size: 227
140084 TTTGCTTTGT
*
140094 TGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAGTTTTTAGGGGAGGTCA
1 TGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAGTGTTTAGGGGAGGTCA
** ** * * *
140159 GACTCGAGAAAATTTTGATCCACTTCGTTGCTCTTAAGGGAAGATTGAATCGAACATGATTTGCT
66 GACTCGAGAAAAAATTGATCCACTTCACTGCTCTTAAGGGAACATTAAATCAAACATGATTTGCT
*
140224 TCGCTGCTCCTCAAGAAGACCAAATCTAAAAGAAGAAGAATTTGCTCCACTACTCTTTAGGGGAG
131 TCGCTGCTCCTCAAGAAGACCAAATCTAAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAG
140289 GTAAAACTTGAGAAAATTTTGATTCACTTCAC
196 GTAAAACTTGAGAAAATTTTGATTCACTTCAC
* *
140321 TGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTTCACTAGTGTTTATGGGAGGTCA
1 TGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAGTGTTTAGGGGAGGTCA
* * *
140386 GACTCGAGAAAAAATTGATTCACTTCACTGCTCTTCAGGGAACATTAAATCAAATATGATTTGCT
66 GACTCGAGAAAAAATTGATCCACTTCACTGCTCTTAAGGGAACATTAAATCAAACATGATTTGCT
* * * * *
140451 TCGCTGCTCTTCAGGAAGACCAAATCTAAAAGAAGAAGAATATGCTCCACTATTTTTTATGGGAG
131 TCGCTGCTCCTCAAGAAGACCAAATCTAAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAG
140516 GT
196 GT
140518 GAGACTCAAG
Statistics
Matches: 178, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
227 178 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (227 bp):
TGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAGTGTTTAGGGGAGGTCA
GACTCGAGAAAAAATTGATCCACTTCACTGCTCTTAAGGGAACATTAAATCAAACATGATTTGCT
TCGCTGCTCCTCAAGAAGACCAAATCTAAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAG
GTAAAACTTGAGAAAATTTTGATTCACTTCAC
Found at i:140872 original size:41 final size:41
Alignment explanation
Indices: 140812--140900 Score: 142
Period size: 41 Copynumber: 2.2 Consensus size: 41
140802 TTTTGATCCA
* *
140812 CTTCGCTGCTCTTCGGGGAAGATTGAATCGAACATGATTTG
1 CTTCGCTGCTCTTCAGGGAAGATTGAATAGAACATGATTTG
**
140853 CTTCGCTGCTCTTCAGGGAAGATTGAATAGAATGTGATTTG
1 CTTCGCTGCTCTTCAGGGAAGATTGAATAGAACATGATTTG
140894 CTTCGCT
1 CTTCGCT
140901 ATTCTTTAGG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (41 bp):
CTTCGCTGCTCTTCAGGGAAGATTGAATAGAACATGATTTG
Found at i:140976 original size:175 final size:175
Alignment explanation
Indices: 140684--141048 Score: 536
Period size: 175 Copynumber: 2.1 Consensus size: 175
140674 TTCACTTCTA
* * * *
140684 TGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTTGCTGCTCCTCAAGAAGACCAAATCTG
1 TGCTCTTCAGGGAAGATTGAATAGAACATGATTTGCTTCGCTACTCCTCAAGAAGACCAAATCTA
*
140749 AAAGAAGAAGAATCTGCTCTACTACTGTTTAGGGGAGGCCAGAGTTGAGAAAATTTTGATCCACT
66 AAAGAAGAAGAATCTGCTCCACTACTGTTTAGGGGAGGCCAGAGTTGAGAAAATTTTGATCCACT
* *
140814 TCGCTGCTCTTCGGGGAAGATTGAATCGAACATGATTTGCTTCGC
131 TCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGC
** * * * *
140859 TGCTCTTCAGGGAAGATTGAATAGAATGTGATTTGCTTCGCTATTCTTTAGGAAGACCAAATCTA
1 TGCTCTTCAGGGAAGATTGAATAGAACATGATTTGCTTCGCTACTCCTCAAGAAGACCAAATCTA
* * *
140924 AAAGAAGAAGAATCTGTTCCACTACTGTTTAGGGGAGGTCAGA-TTCGAGAAAATTTTGATTCAC
66 AAAGAAGAAGAATCTGCTCCACTACTGTTTAGGGGAGGCCAGAGTT-GAGAAAATTTTGATCCAC
* * *
140988 TTTACTGCTCTTTAGGGAATATTGAATCGAACATGATTTGCTTCGC
130 TTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGC
141034 TGCTCTTCA-GGAAGA
1 TGCTCTTCAGGGAAGA
141049 CCAAATCTAA
Statistics
Matches: 170, Mismatches: 19, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
174 8 0.05
175 162 0.95
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31
Consensus pattern (175 bp):
TGCTCTTCAGGGAAGATTGAATAGAACATGATTTGCTTCGCTACTCCTCAAGAAGACCAAATCTA
AAAGAAGAAGAATCTGCTCCACTACTGTTTAGGGGAGGCCAGAGTTGAGAAAATTTTGATCCACT
TCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGC
Found at i:141879 original size:405 final size:403
Alignment explanation
Indices: 139362--146782 Score: 6721
Period size: 405 Copynumber: 18.4 Consensus size: 403
139352 ATCAGATATC
* * * * * * * *
139362 AAAACTTTTGATTCACTTTATTGCTCTTCAGGGAAGGTTAAACCAAACTTGATTTGCTTCGTTGC
1 AAAAC-TTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGC
* * * * * *
139427 TCTTCAGGAATACCAAGTTTGAAA-ATAGAAGAATCTGCTCCACTACTCTTTAGGGGAGATTAGA
65 TCTTCAGGAAGACCAAATCTGAAAGA-AGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGA
* * * * * ** *
139491 CTTC-CGAAAACTTTAATCCACTCCGCTGCTCTTCAGAGAAGATTGAATCGAATGTGATTTGATT
129 C-TCAAGAAAACTTTGATTCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTT
* * * * *
139555 CGCTGCTCTTCAGGAAGACCAAATATTAAAGAAG--GCATATCGACTCCACTACTCTTTAGGGGA
193 CGCTGCTCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATAT-G-CTCCACTACTCTTTAGGGGA
* * ** *
139618 GATTAGACTCGAGAAAACTTTGATTCACTTTGCTACTCTTCAGGGAAGATTGAATCGAACATGAT
256 GGTCAGACTCGAGAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGAT
* * * * * **
139683 TTGCTTCGTTGCTCTTCAGGAATACCAAATCTGAAAAAAGAAGAATTTGTTCCACTACAATTTAG
321 TTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAG
139748 GGGAGGTCAGACTC-A-A
386 GGGAGGTCAGACTCGAGA
**** * * * * ** * * * *
139764 ATTTTTTTTGATCCACTTCGCTGATCTTCAGCGAAGATAAAATCGAAAATAATTTGTTTCGCTAC
1 A-AAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGC
* * * * * *
139829 TCTTCAAGAAGAACAAATATGAAAGAAGAAGAATCTGCTCCACTACACTTTAGGGGAGGTTAGAC
65 TCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGAC
*** * * * * * *
139894 TTGGGAAAATTTTGATTTACTTCGCTGCTCTTCAGGTAAGATTGAATCGAATATGATTTACTTTA
130 TCAAGAAAACTTTGATTCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGC-TTC
** * * * * * *
139959 G-TGCTTTTTAGGAAGACCAAATCTGAAAGAAGAATAATCTGCTCTACTACTGTTTAGGGGAGGT
194 GCTGCTCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGT
* * * * * **
140023 CATACTCAAGAATATTTTGATTCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAATGTGATTTG
259 CAGACTCGAGAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTG
* * *
140088 CTTTGTTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAGTTTTTAGGGG
324 CTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGG
140153 AGGTCAGACTCGAG-
389 AGGTCAGACTCGAGA
* * ** *
140167 AAAATTTTGATCCACTTCGTTGCTCTTAAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * * * * *
140232 CCTCAAGAAGACCAAATCTAAAAGAAGAAGAATTTGCTCCACTACTCTTTAGGGGAGGTAAAACT
66 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
** * * * * * * *
140297 TGAGAAAATTTTGATTCACTTCACTGCTCTTCAGGAAGACCAAATCTGAA-AGAAGAAGAATCTG
131 CAAGAAAACTTTGATTCACTTCGCTGCTCTTCAGG--GA--AGAT-TGAATCGAACATG-ATTTG
* ** * * * ** * * *
140361 CTTCACTAG-TGTTTATGGGAGGTCAGA-CTCG--AGAA-AA-AAT-TGATTCACTTCACTGCTC
190 CTTCGCT-GCTCCTCA-AGAAGACCAAATCT-GAAAGAAGAAGAATATGCTCCAC-T-ACT-CT-
* ** * * * ** * *
140419 TTCAGGGAACATTA-AATC----AAA-TATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCT
248 TT-AGGGGAGGTCAGACTCGAGAAAACTTTGATTCACTTCACTGCTCTTCAGG--GA--AGAT-T
** * * * * * ** * * * *** * * *
140478 -AAAAGAAGAAGAATATGCTCCACTATTTTTTATGGGAGGTGAGA-CT-CAAGAA-AA-AACTTT
307 GAATCGAACATG-ATTTGCTTCGCTGCTCTTCA-GGAAGACCAAATCTGAAAGAAGAAGAA-TCT
* * * * * ** * *
140538 GATTCACTTCGTTGCTCATCAGGGAATAT-TGAATC--G-
369 GCTCCACTAC-TT--T--TTAGGGGAGGTCAGACTCGAGA
* ** * * ** * **
140574 --AA-TGTGATTTTCTTCACTACTCTTCAGGAAGACCAAATCTGAAAGAGAAGAAAATATT-C--
1 AAAACTTTGATTCACTTCACTGCTCTTCAGG--GA--AGAT-TG-AATCGAACATGAT-TTGCTT
* * * ** * * * * * * *
140633 CGCTACTCTTTCGGGGAGGTCAGA-CT-CAAGAA-AA-ACTTTGATTCACTTCTATGCTCTTCAG
59 CGCTGCTC-TTCAGGAAGACCAAATCTGAAAGAAGAAGAATATG-CTC-C-ACTA--CTCTTTAG
* * * * * ** * * * * *
140694 GGAAGAT-TGAATC--G--AAC-ATGATTTGCTTTGCTGCTCCTCAAGAAGACCAAATCTGAA-A
118 GGGAGGTCAGACTCAAGAAAACTTTGATTCACTTCGCTGCTCTTC-AG-GGA--AGAT-TGAATC
* * * * * ** * * * * * * * *
140752 GAAGAAGAATCTGC-TCTACTACTGTTTAGGGGAGGCCAGAGT-TG--AG-A-AA-ATTTTGATC
178 GAACATG-ATTTGCTTC-GCTGCTCCTCA-AGAAGACCA-AATCTGAAAGAAGAAGAATATGCTC
* * * * * * ** *
140810 CACTTCGCTGCTCTTCGGGGAAGAT-TGAATC--G--AAC-ATGATTTGCTTCGCTGCTCTTCAG
239 CAC-T-ACT-CT-TTAGGGG-AGGTCAGACTCGAGAAAACTTTGATTCACTTCACTGCTCTTCAG
* ** ** * *
140869 GGAAGATTGAATAGAATGTGATTTGCTTCGCTATTCTTTAGGAAGACCAAATCTAAAAGAAGAAG
299 GGAAGATTGAATCGAACATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAG
* * *
140934 AATCTGTTCCACTACTGTTTAGGGGAGGTCAGATTCGAG-
364 AATCTGCTCCACTACTTTTTAGGGGAGGTCAGACTCGAGA
* * * *
140973 AAAATTTTGATTCACTTTACTGCTCTTTAGGGAATATTGAATCGAACATGATTTGCTTCGCTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * * * *
141038 CTTCAGGAAGACCAAATCTAAAAGAAGAATAATATGCTCCACTATTTTTTAGGGGAGGTGAGACT
66 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGAC-
* * * * **
141103 TGAGAAAAAACTTTGATTCACTTCGTTGCACTTCAGGGAAGATTGAATCGAATGTGATTTGCTTC
130 TCA-AGAAAACTTTGATTCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTC
* * * * * *
141168 ACTGCTCTTCAGGAAGACCAAATCTGAAAGGAGAAGAATATGTTCCACTACTTTTTAGGGGAGGT
194 GCTGCTCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGT
* * * * **
141233 CAGACTCTAGAAAACTTTGATTCACTTCACTGCTCTTAAGGTAAGATTGATTCGAACACAATTTG
259 CAGACTCGAGAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTG
*
141298 CTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTCTTTAGGGG
324 CTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGG
141363 AGGTCAGACTCGAG-
389 AGGTCAGACTCGAGA
* * * * *
141377 AAAATTTTGA-TCTACTTCGCTGCTCTTCAGGGAAGACTGAATCGAACATAATTTGCTTCGTTGC
1 AAAACTTTGATTC-ACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGC
* * *
141441 TCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCTACTACTATTTAGGGGAGGTTAGAC
65 TCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGAC
* * * * **
141506 TCAAGAAAATTTTGATCCACTTTGCTTCTCTTCAGGGAATTTTGAATCGAACATGATTTGCTTCG
130 TCAAGAAAACTTTGATTCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCG
* * *
141571 CTGCTCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCAACTACTATTTAGGGGAGGTC
195 CTGCTCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTC
*
141636 AGACTCGAGAAAATTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGC
260 AGACTCGAGAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGC
* * * * * *
141701 TTCGCTGCTTTTCAGGAAGACCAAATTTGAAAAAAAGAAAAATTTGCTCCACTAATTTTTAGGGG
325 TTCGCTGCTCTTCAGGAAGACCAAATCTG-AAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGG
* *
141766 AGGTGAGGCTCGAGA
389 AGGTCAGACTCGAGA
*** * ** * *
141781 AAACACTTTGATTCACTTTGTTGCTCTTGAGGGAAGATTGAATCGAATGTGATTTGCTTCACTAC
1 AAA-ACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGC
* * * * * *
141846 TCTTCAGGAAGACCAAATATGAAAGGAGAAGAATATGTTCCGCTCCTCTTTAGGGTAGGAT-AGA
65 TCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGG-TCAGA
** ** * * *
141910 CTTGAGAAAAACTTAAATTCACTTCGATGCTCTTC-GGAGAAGATTGAGTCGAACATGATTTTCT
129 CTCAAG-AAAACTTTGATTCACTTCGCTGCTCTTCAGG-GAAGATTGAATCGAACATGATTTGCT
* * *
141974 TCGCTGATCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCATTACTGTTTAGGGGAG
192 TCGCTGCTCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAG
* * * * *
142039 GTCAGACTCGAGAAAATTTTGATCCACTTCGCTGCTCTTCAAGGATGATTGAATCGAACATGATT
257 GTCAGACTCGAGAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATT
* * * * *
142104 TGCTTCGTTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGTTCCACTAATGTTTAGG
322 TGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGG
* *
142169 GGATGTCAGACTCTAG-
387 GGAGGTCAGACTCGAGA
* * *
142185 AAAATTTTGATTCTCTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTCCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * * * * *
142250 CTTCAAGAAGACCAAATCTGAAAGAAGAAGAATCTACTCCACTAATTTTTAGGGGAGGTGAGACT
66 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
* * **
142315 CGAGAAAAAACTTTGATTCAC-TCAGTTGCTCTTCAGGGAAGATTGAATCGAATGTGATTTGCTT
131 C-A-AGAAAACTTTGATTCACTTC-GCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTT
* * * * * *
142379 CAG-TGCTCTTCAGGAAGACCAAATATGGAAAG-AGAAGAATATGTTCCGCTACTCTTTAAGGGA
193 C-GCTGCTCCTCAAGAAGACCAAATCT-GAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGA
* *
142442 GATCAGACTCGAGAAAAACATTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGA
256 GGTCAGACTCGAG-AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGA
* * *
142507 TTTGCTTCGCTTCTCTTCAGGAAGACCAAATCTGAAAAAAAAAATAAGAATCTGCTCCACTACTT
320 TTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG----AAAGAAGAAGAATCTGCTCCACTACTT
*
142572 TTTAGGGGAGGTCAGACTCAAG-
381 TTTAGGGGAGGTCAGACTCGAGA
* ** * *
142594 AAAATTTTGAACCACTTTACTGCTCTTCAGGGAATATTGAATCGAACATGATTTGCTTCGCTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * *
142659 CTTCAGGAAGA-CAAATATGAAAGAAGAAGAATCTGCTCCACTAATCTTTAGGGGAGGTCAGACT
66 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
* *
142723 CTAA-AAAATTTTGATCCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTTC
131 C-AAGAAAACTTTGATTCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGC-TTC
* * * ** ** * *
142787 -CTGCTCCTTAAGAAGACCAAATCTGAAAGAAGAAGAATCTACTTTACTGTTGTTTAGGGGATGT
194 GCTGCTCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGT
* * * *
142851 TAGACTCGATAAAATTTTGATTCACTTCACTGCTCTTCAGGGAAGATTAAATCGAACATGATTTG
259 CAGACTCGAGAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTG
* *
142916 CTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAATAATCTGCTCCACTATTTTTTAGGGG
324 CTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGG
* * *
142981 AGCTGAGATTCGAGAA
389 AGGTCAGACTCGAG-A
* ** * ** *
142997 AAAACTTTAATTCACTTCGTTGCTCTTTAGGGAAGATTGAATCGAATGTGATTTGCTTCACTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * * * * *
143062 CTTCAGGACA-ACCAAATATGAAAGGAGAAGAATATGTTCCGCTACTCTTTAGGGGATGTCAGTC
66 CTTCAGGA-AGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGAC
* ** * *
143126 TCGAGAAAAACTTTGATTCACTTCAATGCTCTTC-GTAGAAGATTGAGTCGAACATGATTTGCTT
130 TCAAG-AAAACTTTGATTCACTTCGCTGCTCTTCAG-GGAAGATTGAATCGAACATGATTTGCTT
* * *
143190 CAG-TGCTCCTCAAGATGACCAAATCTGAAAAAAGAAGAATATGCTCCACTACTTTTTAGGGGAG
193 C-GCTGCTCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAG
* * ** * * * *
143254 GTCAGACTCGAGAAAATTTTGATCCACTTCGTTGCTCTTCAAGGATGATTGAATCGAATATTATT
257 GTCAGACTCGAGAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATT
* * * * * *
143319 TGCATCGCTCCTCTTCAGGAAGACTAAATCTGAAAGAAGAAGAATATGTTCCACTACTGTTTAGG
322 TGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGG
143384 GGAGGTCAGACTCGAG-
387 GGAGGTCAGACTCGAGA
* *
143400 AAAATTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTTGCTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * * *
143465 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTATTTTTTAGGGGAGGTGAGACT
66 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
* * * **
143530 CGAGGAAAAACTTTGATTCACTTAGTTGCTCTTCAGGGAAGATTGAATCGAATGTGATTTGCTTC
131 C-AAG-AAAACTTTGATTCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTC
* * * * ** * *
143595 ACTGCTCTTCAGGAAGACCGAATAAGGAAAG-AGAAGAATATGTTCCGCTACTCTTTAGGGGAGG
194 GCTGCTCCTCAAGAAGACCAAAT-CTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGG
*
143659 TCAGACTCAAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATT
258 TCAGACTCGAG-AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATT
* * * *
143724 TGCTTTGCTTCTCTTCAGGAAGACCAAATCTGAAAAAAAAAATAAGAATCTGCTCCACTACTTTT
322 TGCTTCGCTGCTCTTCAGGAAGACCAAATCTG----AAAGAAGAAGAATCTGCTCCACTACTTTT
143789 TAGGGGAGGTCAGACTCGAG-
383 TAGGGGAGGTCAGACTCGAGA
* ** * * *
143809 AAAATTTTGAACCACTTTACTGCTCTTCAGTGAATATTGAATCGAACATGATTTGCTTCGCTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * *
143874 CTTTAGGAAGACCAAATCTGAAAGAAGAAGAATTTGCTCCACTAATCTTTAGGGGAGGTCAGACT
66 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
** * * *
143939 CTTGAAAATTTTGATCCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCCC
131 CAAGAAAACTTTGATTCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGC
* * ** * * *
144004 TGCTCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATCTACTTTACTGCTGTTTAGGGGAGGTTA
196 TGCTCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCA
* * *
144069 GACTCGAGAAAATTTTGATTCACTTCACTGCTATTCAGGGAAGATTAAATCGAACATGATTTGCT
261 GACTCGAGAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCT
* * *
144134 TCGCTGCTCTTCAGGAAGACCAAATTTGAAATAAGAATAATCTGCTCCACTA-TTGTTTAGGGGA
326 TCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTT-TTTAGGGGA
* *
144198 GGTGAGATTCGAGAA
390 GGTCAGACTCGAG-A
** ** *
144213 AAAACTTTGATTCACTTCGTTGCTCTTCAGGGAAGATTGAATCGAATGTGATTTGCTTCACTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * * * * * * *
144278 CTTAAGGACGACCAAATATGAAAGGAGAAGAATATGTTTCGCTACTCTTTAGGGGAGGTTAGACT
66 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
* * * * *
144343 CGAGAAAAACTTTGATTCACTTCGATGCTCTTC-GTAGAATATTGAGTCGAACATGATTTGCTTC
131 CAAG-AAAACTTTGATTCACTTCGCTGCTCTTCAG-GGAAGATTGAATCGAACATGATTTGCTTC
* * * * *
144407 GCTGCTCCTCAAGATGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTGTTTATGAGAGGT
194 GCTGCTCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGT
* * * * * *
144472 TAGACTCGAGAAAATTTTGA-TCAACTTCGCTACTCTTCAAGGATGATTGAATCGAACATGATTT
259 CAGACTCGAGAAAACTTTGATTC-ACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTT
* * * *
144536 GCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAATAATATGTTCCACTACTGTTTAGGG
323 GCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGG
144601 GAGGTCAGACTCGAG-
388 GAGGTCAGACTCGAGA
* *
144616 AAAATTTTGATTCACTTTACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * * *
144681 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTATTTTTTAGGGGAGGTGAGACT
66 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGAC-
* * * * * * * ** *
144746 TGAGAAAAAACTTTGATTCACTTAGTTACTCTTTAAGGAAGATTGAATCGAATGTTATTTGCTTC
130 TCA-AGAAAACTTTGATTCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTC
* * * * * * *
144811 ACTGCTCTTCAGGAAGACCAAATATAGAAAG-AGAAGAATATGTTCCGCTACTCTTTAGGGAAGG
194 GCTGCTCCTCAAGAAGACCAAATCT-GAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGG
* * * *
144875 TGAGACTCAAGAAAAACTTTGATTCACTTCACTACTCTTCAGGGAAGATTGAATCGAACGTGATT
258 TCAGACTCGAG-AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATT
* * * * *
144940 TGTTTCGCTTCTCTTCAGGAAGA-CAAATTTGAAAAAAATAAGAATCTGCTCCACTACTTTTTAG
322 TGCTTCGCTGCTCTTCAGGAAGACCAAATCTG-AAAGAAGAAGAATCTGCTCCACTACTTTTTAG
*
145004 GGGAGGTCAGACTTGAGA
386 GGGAGGTCAGACTCGAGA
* ** * *
145022 AAAA-ATTGAACCACTTTACTGCTCTTCAGGGAATATTGAATCGAACATGATTTGCTTCGCTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
** * * *
145086 CTTCAGGAAGATTAAATCTGAAAGAAGAAGAATTTGCTCCACTAATCTTTAGGGGAGGTAAGACT
66 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
* * * * * * *
145151 CCAA-AAAAGTTTGATCCACTTCGCTACTCTTCAGGAAATATTTAATCGAACATGACTTGCTTTC
131 -CAAGAAAACTTTGATTCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGC-TTC
* * * ** ** *
145215 -CTGCTCCTCAAGAAGACCAAATCTGAAAGAAGAATAATCTACTTTACTGTTATTTAGGGGAGGT
194 GCTGCTCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGT
* * * * * * *
145279 TAGACTCGAGAAAATTTTGATTCACTTTATTGCTCTTCAGGGAAGATTAAATCAAACATTATTTG
259 CAGACTCGAGAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTG
145344 CTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTA-TTTTTAGGGG
324 CTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGG
* *
145408 AGGTGAGATTCGAGAAA
389 AGGTCAGACTCGAG--A
* ** * ** * *
145425 AAAACTTTGATTCACGTCGTTGCTCTTCATGGAAGATTGAATCGAATGTGATTTGCTTCACTACT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * * * *
145490 CTTCAGGAAGACCAAATCTGAATGTAGAAGAATATGCTCCACTACTCTTTAGGGGATGTTAGATT
66 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
* * * * *
145555 CGAGAAAAACTTTGATTCACTTCGATGCTCTTCAGGGAAGATTGAATCGAATATGATTTTCTTCA
131 CAAG-AAAACTTTGATTCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCG
* * * * * * *
145620 CTGCT-ATCCAGGAAGACAAAATATGAAA-AATTAAGAATTTGCTCCGCTACTCTTTAGGGGAGG
195 CTGCTCCT-CAAGAAGACCAAATCTGAAAGAA-GAAGAATATGCTCCACTACTCTTTAGGGGAGG
* * **
145683 TCAGACTCGAGAAAAACTTTGATTCACTTCGA-TGCTCTTCAGGAAAGATTGAATCAAATGTGAT
258 TCAGACTCGAG-AAAACTTTGATTCACTTC-ACTGCTCTTCAGGGAAGATTGAATCGAACATGAT
** * ** ** *
145747 TTGCTTCATTGCTCTTCCGGAAGACCAAATCTGAAAGAAGAAGAATCTATTCTGCTACTCTTTAG
321 TTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAG
* * *
145812 GGGATGTTAGACTAGAGA
386 GGGAGGTCAGACTCGAGA
* * * * ** * * *
145830 AAAACTATGATTCACTTCCCTGCTCTTCAGGGATGATTTAATCGAATGTGATTTACTGCACTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * * * * * * *
145895 ATTTAGGTAGACCAAATCTGAAAGAAGAAGAATATGCTCCTCTATTCTTTAAGGGTGGTCATACT
66 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
* * * * * * * ** * * *
145960 CGAGAAAAAATTTGATTCACTTCACTTCTCTTCAGGAAAGATTAAATTGAATGTTATTTACTTCA
131 CAAG-AAAACTTTGATTCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCG
* * * * * **
146025 CTGCTCTTCAGGAGGACCAAATCTG--A-AAGAAGAATCTACTCTGCTACTCTTTAGGGGAGGTC
195 CTGCTCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTC
* * * * * *
146087 ATACTCGAGAAAAACTTTGATT-ACTTCGCTACTCTTCAGAGAAGATTGAATCGAATATAATTTG
260 AGACTCGAG-AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTG
** * * * * * * * *
146151 CTTAACTACTCTTCTGGAATACCAAATATGAAAGAAGAAGAATCTTCTCCGCTACTCTTTACGGG
324 CTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGG
146216 AGGTCAGACTCGAGA
389 AGGTCAGACTCGAGA
* * ** * * *
146231 AAAACTTTAATTCACTTCACTGTTCTTCAGGGAAGATTGAATCGAATGTGATTTTCTTCACTTCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * * * *
146296 CTTCAGGAAGACCAAATCTGAAA-AGGAAGAATCTGCTCCGCTACTATTTAGGGGAGGTCAGAAT
66 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
* * * **
146360 CGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTAAATCGAATGTGATTTGCTT-G
131 CAAG-AAAACTTTGATTCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCG
* * ** * * * **
146424 ACTACTCTTCCGGGAA-ACCAAATCTAAAAGATGAAGAAT-TAGCTCTC-TTTTTCTTTAGGGGA
195 -CTGCTCCT-CAAGAAGACCAAATCTGAAAGAAGAAGAATAT-GCTC-CACTACTCTTTAGGGGA
* * * * * ** **
146486 GGTCAGAATCGAGAAAAACTTTGATTCACTTCGCTTCTCTTCAGGGAATATTTAATTAAATGTGA
256 GGTCAGACTCGAG-AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGA
* * * * ** *
146551 TTTACTTCACTGATCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCGTTACTCTTTA
320 TTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTA
146616 GGGGAGGTCAGACTCGAGA
385 GGGGAGGTCAGACTCGAGA
** * ** * * * *
146635 AAAACTTTGATTCACTTTGCTGCTCTTCAAGGAAGATTGAATCGAATGTAATTTGGTTCACAGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * * *
146700 CTTCAGGAAGACCAAATCTGAAAGAAGAAAAATATGCTCCGCTACTCTTTAAGGGAGGTCAGTCT
66 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
* *
146765 CGAGAAAATTTTGATTCA
131 CAAGAAAACTTTGATTCA
146783 TTCTACCACT
Statistics
Matches: 5785, Mismatches: 1049, Indels: 368
0.80 0.15 0.05
Matches are distributed among these distances:
395 2 0.00
396 26 0.00
397 20 0.00
398 35 0.01
399 53 0.01
400 139 0.02
401 267 0.05
402 892 0.15
403 636 0.11
404 1185 0.20
405 1430 0.25
406 515 0.09
407 175 0.03
408 90 0.02
409 290 0.05
410 28 0.00
411 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (403 bp):
AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
CAAGAAAACTTTGATTCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGC
TGCTCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCA
GACTCGAGAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCT
TCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGGAG
GTCAGACTCGAGA
Found at i:142685 original size:539 final size:538
Alignment explanation
Indices: 139362--146782 Score: 6469
Period size: 539 Copynumber: 13.8 Consensus size: 538
139352 ATCAGATATC
* * * * * * * *
139362 AAAACTTTTGATTCACTTTATTGCTCTTCAGGGAAGGTTAAACCAAACTTGATTTGCTTCGTTGC
1 AAAAC-TTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGC
* * * * * *
139427 TCTTCAGGAATACCAAGTTTGAAAATAGAAGAATCTGCTCCACTACTCTTTAGGGGAGATTAGAC
65 TCTTCAGGAAGACCAAATCTG-AAA-AGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGAC
* * * * * * ** *
139492 TTC-CG-AAAACTTTAATCCACTCCGCTGCTCTTCAGAGAAGATTGAATCGAATGTGATTTGATT
128 -TCGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTT
* * *
139555 CGCTGCTCTTCAGGAAGACCAAATATTAAAGAAG--GCATATC-GACTCCACTACTCTTTAGGGG
192 CGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAG-A-ATCTG-CTCCACTACTTTTTAGGGG
* * * *
139617 AGATTAGACTCGAG-AAAACTTTGATTCACTT-TGCTACTCTTCAGGGAAGATTGAATCGAACAT
254 AGGTCAGACTCGAGAAAAACTTTGATTCACTTCAGCTGCTCTTCAGGGAAGATTGAATCGAACAT
* * * * **
139680 GATTTGCTTC-GTTGCTCTTCAGGAATACCAAATCTGAAAAAAGAAGAATTTGTTCCACTACAAT
319 GATTTGCTTCAG-TGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTCT
**** * * * * **
139744 TTAGGGGAGGTCAGACTC-A-AATTTTTTTTGATCCACTTCGCTGATCTTCAGCGAAGATAAAAT
383 TTAGGGGAGGTCAGACTCGAGAA-AAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAAT
* * * * * * *
139807 CGAAAATAATTTGTTTCGCTACTCTTCAAGAAGAACAAATATGAAAGAAGAAGAATCTGCTCCAC
447 CGAACATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCAC
** * ***
139872 TACACTTTAGGGGAGGTTAGACTTGGG
512 TACTTTTTAGGGGAGGTCAGACTCAAG
* * * * * * *
139899 AAAATTTTGATTTACTTCGCTGCTCTTCAGGTAAGATTGAATCGAATATGATTTACTTTAG-TGC
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGC-TTCGCTGC
* * * * *
139963 TTTTTAGGAAGACCAAATCTG-AAAGAAGAATAATCTGCTCTACTACTGTTTAGGGGAGGTCATA
65 TCTTCAGGAAGACCAAATCTGAAAAGAAGAAT-A--TGCTCCACTACTCTTTAGGGGAGGTCAGA
* * * * **
140027 CTCAAG-AATATTTTGATTCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAATGTGATTTGCTT
127 CTCGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTT
* * *
140091 TGTTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAGTTTTTAGGGGAGG
192 CGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGGAGG
* * * *
140156 TCAGACTCGAG-AAAATTTTGATCCACTTC-GTTGCTCTTAAGGGAAGATTGAATCGAACATGAT
257 TCAGACTCGAGAAAAACTTTGATTCACTTCAGCTGCTCTTCAGGGAAGATTGAATCGAACATGAT
* * * *
140219 TTGCTTC-GCTGCTCCTCAAGAAGACCAAATCTAAAAGAAGAAGAATTTGCTCCACTACTCTTTA
322 TTGCTTCAG-TGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTCTTTA
* * * * *
140283 GGGGAGGTAAAACTTGAG-AAAATTTTGATTCACTTCACTGCTCTTCAGGAAGACCAAATCTGAA
386 GGGGAGGTCAGACTCGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGG--GA--AGAT-TGAA
* * * * * * * * ** * *
140347 -AGAAGAAGAATCTGCTTCACTAG-TGTTTATGGGAGGTCAGA-CTCGAGAA-AA-AATTGATTC
446 TCGAACATG-ATTTGCTTCGCT-GCTCTTCA-GGAAGACCAAATCT-GA-AAGAAGAA--GAATC
* * * * * * * * *
140407 -ACTTCACTGCTCTTCA-GGGA----ACATTAAAT
504 TGCTCCACTACTTTTTAGGGGAGGTCAGACTCAAG
* * ** * * ** * * * *
140436 CAAA-TATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCT-AAAAGAAGAAGAATATGCTCC
1 AAAACTTTGATTCACTTCACTGCTCTTCAGG--GA--AGAT-TGAATCGAACATG-ATTTGCTTC
* ** * * * *** * * * * * * *
140499 ACTATTTTTTATGGGAGGTGAGA-CTCAAGAA-AA-AACTTTGATTCACTTCGTTGCTCATCAGG
60 GCTGCTCTTCA-GGAAGACCAAATCTGAA-AAGAAGAA-TATGCTCCACTAC--T-CT--TTAGG
* ** * * * ** * * *
140561 GAATAT-TGAATC--G---AA-TGTGATTTTCTTCACTACTCTTCAGGAAGACCAAATCTGAAAG
117 GGAGGTCAGACTCGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGG--GA--AGAT-TG-AAT
* * ** * * * ** * * * * * *
140619 AGAAGAAAATATT-C--CGCTACTCTTTCGGGGAGGTCAGA-CT-CAAGAA-AA-ACTTTGATTC
176 CGAACATGAT-TTGCTTCGCTGCTC-TTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCC
* * * * * * ** * *
140677 ACTTCTATGCTCTTCAGGGAAGAT-TGAATC--G---AAC-ATGATTTGCTT-TGCTGCTCCTCA
239 ACTACT-T--T-TT-AGGGGAGGTCAGACTCGAGAAAAACTTTGATTCACTTCAGCTGCTCTTC-
* * * * * * * * * * * * *
140734 AGAAGACCAAATCTGAA-AGAAGAAGAATCTGC-TCTACTACTGTTTAGGGGAGGCCAGAGT-TG
298 AG-GGA--AGAT-TGAATCGAACATG-ATTTGCTTC-AGTGCTCTTCA-GGAAGACCA-AATCTG
* * * * * * ** *
140796 --AG-A-AA-ATTTTGATCCACTTCGCTGCTCTTCGGGGA----AGA-TTGA-ATCGAAC-ATGA
355 AAAGAAGAAGAATCTGCTCCAC-T-ACT-CT-TTAGGGGAGGTCAGACTCGAGA-AAAACTTTGA
** * * ** ** *
140849 TTTGCTTCGCTGCTCTTCAGGGAAGATTGAATAGAATGTGATTTGCTTCGCTATTCTTTAGGAAG
415 TTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCTCTTCAGGAAG
* * * * *
140914 ACCAAATCTAAAAGAAGAAGAATCTGTTCCACTACTGTTTAGGGGAGGTCAGATTCGAG
480 ACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGGAGGTCAGACTCAAG
* * * *
140973 AAAATTTTGATTCACTTTACTGCTCTTTAGGGAATATTGAATCGAACATGATTTGCTTCGCTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * *
141038 CTTCAGGAAGACCAAATCT-AAAAGAAGAATAATATGCTCCACTATTTTTTAGGGGAGGTGAGAC
66 CTTCAGGAAGACCAAATCTGAAAAGAAG---AATATGCTCCACTACTCTTTAGGGGAGGTCAGAC
* ** * **
141102 TTGAGAAAAAACTTTGATTCACTTCGTTGCACTTCAGGGAAGATTGAATCGAATGTGATTTGCTT
128 TCGAG-AAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTT
* * * *
141167 CACTGCTCTTCAGGAAGACCAAATCTGAAAGGAGAAGAATATGTTCCACTACTTTTTAGGGGAGG
192 CGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGGAGG
* * * * **
141232 TCAGACTCTAG-AAAACTTTGATTCACTTCA-CTGCTCTTAAGGTAAGATTGATTCGAACACAAT
257 TCAGACTCGAGAAAAACTTTGATTCACTTCAGCTGCTCTTCAGGGAAGATTGAATCGAACATGAT
141295 TTGCTTC-GCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTCTTTA
322 TTGCTTCAG-TGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTCTTTA
* * *
141359 GGGGAGGTCAGACTCGAG-AAAATTTTGA-TCTACTTCGCTGCTCTTCAGGGAAGACTGAATCGA
386 GGGGAGGTCAGACTCGAGAAAAACTTTGATTC-ACTTCACTGCTCTTCAGGGAAGATTGAATCGA
* * * *
141422 ACATAATTTGCTTCGTTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCTACTAC
450 ACATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAC
* *
141487 TATTTAGGGGAGGTTAGACTCAAG
515 TTTTTAGGGGAGGTCAGACTCAAG
* * ** * **
141511 AAAATTTTGATCCACTTTGCTTCTCTTCAGGGAATTTTGAATCGAACATGATTTGCTTCGCTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * * * *
141576 CCTCAAGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCAACTACTATTTAGGGGAGGTCAGACT
66 CTTCAGGAAGACCAAATCTG-AA-AAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
*
141641 CGAG-AAAATTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCG
129 CGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCG
* * * * * *
141705 CTGCTTTTCAGGAAGACCAAATTTGAAAAAAAGAAAAATTTGCTCCACTAATTTTTAGGGGAGGT
194 CTGCTCTTCAGGAAGACCAAATCTG-AAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGGAGGT
* * * * * **
141770 GAGGCTCGAGAAAACACTTTGATTCACTT-TGTTGCTCTTGAGGGAAGATTGAATCGAATGTGAT
258 CAGACTCGAGAAAA-ACTTTGATTCACTTCAGCTGCTCTTCAGGGAAGATTGAATCGAACATGAT
* * * * * * * *
141834 TTGCTTCACTACTCTTCAGGAAGACCAAATATGAAAGGAGAAGAATATGTTCCGCTCCTCTTTAG
322 TTGCTTCAGTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTCTTTAG
* * ** *
141899 GGTAGGAT-AGACTTGAGAAAAACTTAAATTCACTTCGA-TGCTCTTC-GGAGAAGATTGAGTCG
387 GGGAGG-TCAGACTCGAGAAAAACTTTGATTCACTTC-ACTGCTCTTCAGG-GAAGATTGAATCG
* * * * * *
141961 AACATGATTTTCTTCGCTGATCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCATTA
449 AACATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTA
* *
142026 CTGTTTAGGGGAGGTCAGACTCGAG
514 CTTTTTAGGGGAGGTCAGACTCAAG
* * * * * *
142051 AAAATTTTGATCCACTTCGCTGCTCTTCAAGGATGATTGAATCGAACATGATTTGCTTCGTTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * * *
142116 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGTTCCACTAATGTTTAGGGGATGTCAGACT
66 CTTCAGGAAGACCAAATCTG-AA-AAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
* * *
142181 CTAG-AAAATTTTGATTCTCTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCG
129 CGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCG
* * * * *
142245 CTCCTCTTCAAGAAGACCAAATCTGAAAGAAGAAGAATCTACTCCACTAATTTTTAGGGGAGGTG
194 CTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGGAGGTC
* **
142310 AGACTCGAGAAAAAACTTTGATTCAC-TCAGTTGCTCTTCAGGGAAGATTGAATCGAATGTGATT
259 AGACTCGAG-AAAAACTTTGATTCACTTCAGCTGCTCTTCAGGGAAGATTGAATCGAACATGATT
* * * * *
142374 TGCTTCAGTGCTCTTCAGGAAGACCAAATATGGAAAG-AGAAGAATATGTTCCGCTACTCTTTAA
323 TGCTTCAGTGCTCTTCAGGAAGACCAAATCT-GAAAGAAGAAGAATCTGCTCCACTACTCTTTAG
* *
142438 GGGAGATCAGACTCGAGAAAAACATTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAAC
387 GGGAGGTCAGACTCGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAAC
* * *
142503 ATGATTTGCTTCGCTTCTCTTCAGGAAGACCAAATCTGAAAAAAAAAATAAGAATCTGCTCCACT
452 ATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTG----AAAGAAGAAGAATCTGCTCCACT
142568 ACTTTTTAGGGGAGGTCAGACTCAAG
513 ACTTTTTAGGGGAGGTCAGACTCAAG
* ** * *
142594 AAAATTTTGAACCACTTTACTGCTCTTCAGGGAATATTGAATCGAACATGATTTGCTTCGCTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * *
142659 CTTCAGGAAGA-CAAATATGAAAGAAGAAGAATCTGCTCCACTAATCTTTAGGGGAGGTCAGACT
66 CTTCAGGAAGACCAAATCTG-AA-AAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
* * * *
142723 CTA-AAAAATTTTGATCCACTTCGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTTC
129 CGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGC-TTC
* * ** * *
142787 -CTGCTCCTT-AAGAAGACCAAATCTGAAAGAAGAAGAATCTACTTTACT-GTTGTTTAGGGGAT
193 GCTGCT-CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTT-TTTAGGGGAG
* * * *
142849 GTTAGACTCGA-TAAAATTTTGATTCACTTCA-CTGCTCTTCAGGGAAGATTAAATCGAACATGA
256 GTCAGACTCGAGAAAAACTTTGATTCACTTCAGCTGCTCTTCAGGGAAGATTGAATCGAACATGA
* * *
142912 TTTGCTTC-GCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAATAATCTGCTCCACTATTTTTT
321 TTTGCTTCAG-TGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTCTTT
* * * * ** *
142976 AGGGGAGCTGAGATTCGAGAAAAAACTTTAATTCACTTCGTTGCTCTTTAGGGAAGATTGAATCG
385 AGGGGAGGTCAGACTCGAG-AAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCG
** * * * * * *
143041 AATGTGATTTGCTTCACTGCTCTTCAGGACA-ACCAAATATGAAAGGAGAAGAATATGTTCCGCT
449 AACATGATTTGCTTCGCTGCTCTTCAGGA-AGACCAAATCTGAAAGAAGAAGAATCTGCTCCACT
* * * *
143105 ACTCTTTAGGGGATGTCAGTCTCGAG
513 ACTTTTTAGGGGAGGTCAGACTCAAG
* * *
143131 AAAAACTTTGATTCACTTCAATGCTCTTC-GTAGAAGATTGAGTCGAACATGATTTGCTTCAG-T
1 -AAAACTTTGATTCACTTCACTGCTCTTCAG-GGAAGATTGAATCGAACATGATTTGCTTC-GCT
* * * *
143194 GCTCCTCAAGATGACCAAATCTGAAAAAAGAAGAATATGCTCCACTACTTTTTAGGGGAGGTCAG
63 GCTCTTCAGGAAGACCAAATCTG--AAAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAG
* * ** * * * * *
143259 ACTCGAG-AAAATTTTGATCCACTTCGTTGCTCTTCAAGGATGATTGAATCGAATATTATTTGCA
126 ACTCGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCT
* * * * *
143323 TCGCTCCTCTTCAGGAAGACTAAATCTGAAAGAAGAAGAATATGTTCCACTACTGTTTAGGGGAG
191 TCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGGAG
*
143388 GTCAGACTCGAG-AAAATTTTGATTCACTTCA-CTGCTCTTCAGGGAAGATTGAATCGAACATGA
256 GTCAGACTCGAGAAAAACTTTGATTCACTTCAGCTGCTCTTCAGGGAAGATTGAATCGAACATGA
* * *
143451 TTTGCTT-TGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTATTTTTT
321 TTTGCTTCAG-TGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTCTTT
* *
143515 AGGGGAGGTGAGACTCGAGGAAAAACTTTGATTCACTT-AGTTGCTCTTCAGGGAAGATTGAATC
385 AGGGGAGGTCAGACTCGA-GAAAAACTTTGATTCACTTCA-CTGCTCTTCAGGGAAGATTGAATC
** * * ** * * *
143579 GAATGTGATTTGCTTCACTGCTCTTCAGGAAGACCGAATAAGGAAAG-AGAAGAATATGTTCCGC
448 GAACATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAAT-CTGAAAGAAGAAGAATCTGCTCCAC
*
143643 TACTCTTTAGGGGAGGTCAGACTCAAG
512 TACTTTTTAGGGGAGGTCAGACTCAAG
* *
143670 AAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTTGCTTC
1 -AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGC
* * *
143735 TCTTCAGGAAGACCAAATCTGAAAAAAAAAATAAGAATCTGCTCCACTACTTTTTAGGGGAGGTC
65 TCTTCAGGAAGACCAAATCTG------AAAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTC
* ** * * *
143800 AGACTCGAG-AAAATTTTGAACCACTTTACTGCTCTTCAGTGAATATTGAATCGAACATGATTTG
124 AGACTCGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTG
* * * *
143864 CTTCGCTGCTCTTTAGGAAGACCAAATCTGAAAGAAGAAGAATTTGCTCCACTAATCTTTAGGGG
189 CTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGG
** * *
143929 AGGTCAGACTCTTG-AAAATTTTGATCCACTTC-GCTGCTCTTCAGGGAAGATTGAATCGAACAT
254 AGGTCAGACTCGAGAAAAACTTTGATTCACTTCAGCTGCTCTTCAGGGAAGATTGAATCGAACAT
** * * * ** * *
143992 GATTTGCTTCCCTGCTCCTCAAGAAGACCAAATCTGAAAGAAGAAGAATCTACTTTACTGCTGTT
319 GATTTGCTTCAGTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTCTT
* * * *
144057 TAGGGGAGGTTAGACTCGAG-AAAATTTTGATTCACTTCACTGCTATTCAGGGAAGATTAAATCG
384 TAGGGGAGGTCAGACTCGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCG
* * *
144121 AACATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATTTGAAATAAGAATAATCTGCTCCACTA
449 AACATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTA
* * *
144186 -TTGTTTAGGGGAGGTGAGATTCGAGAA
514 CTT-TTTAGGGGAGGTCAGACTC-A-AG
** ** *
144213 AAAACTTTGATTCACTTCGTTGCTCTTCAGGGAAGATTGAATCGAATGTGATTTGCTTCACTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * * * * * *
144278 CTTAAGGACGACCAAATATGAAAGGAGAAGAATATGTTTCGCTACTCTTTAGGGGAGGTTAGACT
66 CTTCAGGAAGACCAAATCTGAAA--AGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
* * *
144343 CGAGAAAAACTTTGATTCACTTCGA-TGCTCTTC-GTAGAATATTGAGTCGAACATGATTTGCTT
129 CGAGAAAAACTTTGATTCACTTC-ACTGCTCTTCAG-GGAAGATTGAATCGAACATGATTTGCTT
* * * * * *
144406 CGCTGCTCCTCAAGATGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTGTTTATGAGAGG
192 CGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGGAGG
* * * * *
144471 TTAGACTCGAG-AAAATTTTGA-TCAACTTC-GCTACTCTTCAAGGATGATTGAATCGAACATGA
257 TCAGACTCGAGAAAAACTTTGATTC-ACTTCAGCTGCTCTTCAGGGAAGATTGAATCGAACATGA
* * * *
144533 TTTGCTTC-GCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAATAATATGTTCCACTACTGTTT
321 TTTGCTTCAG-TGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTCTTT
* *
144597 AGGGGAGGTCAGACTCGAG-AAAATTTTGATTCACTTTACTGCTCTTCAGGGAAGATTGAATCGA
385 AGGGGAGGTCAGACTCGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGA
*
144661 ACATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAT
450 ACATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAC
* * *
144726 TTTTTAGGGGAGGTGAGACTTGAGAA
515 TTTTTAGGGGAGGTCAGAC-TCA-AG
* * * * ** * *
144752 AAAACTTTGATTCACTT-AGTTACTCTTTAAGGAAGATTGAATCGAATGTTATTTGCTTCACTGC
1 AAAACTTTGATTCACTTCA-CTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGC
* * * * *
144816 TCTTCAGGAAGACCAAATATAGAAAGAGAAGAATATGTTCCGCTACTCTTTAGGGAAGGTGAGAC
65 TCTTCAGGAAGACCAAATCT-GAAA-AGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGAC
* * * *
144881 TCAAGAAAAACTTTGATTCACTTCACTACTCTTCAGGGAAGATTGAATCGAACGTGATTTGTTTC
128 TCGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTC
* * * *
144946 GCTTCTCTTCAGGAAGA-CAAATTTGAAAAAAATAAGAATCTGCTCCACTACTTTTTAGGGGAGG
193 GCTGCTCTTCAGGAAGACCAAATCTG-AAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGGAGG
* * ** * *
145010 TCAGACTTGAGAAAAA-ATTGAACCACTTTA-CTGCTCTTCAGGGAATATTGAATCGAACATGAT
257 TCAGACTCGAGAAAAACTTTGATTCACTTCAGCTGCTCTTCAGGGAAGATTGAATCGAACATGAT
** * *
145073 TTGCTTC-GCTGCTCTTCAGGAAGATTAAATCTGAAAGAAGAAGAATTTGCTCCACTAATCTTTA
322 TTGCTTCAG-TGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTCTTTA
* * * * * * * * *
145137 GGGGAGGTAAGACTCCA-AAAAAGTTTGATCCACTTCGCTACTCTTCAGGAAATATTTAATCGAA
386 GGGGAGGTCAGACTCGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAA
* * * * * ** *
145201 CATGACTTGCTTTC-CTGCTCCTCAAGAAGACCAAATCTGAAAGAAGAATAATCTACTTTACT-G
451 CATGATTTGC-TTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAC
* *
145264 TTATTTAGGGGAGGTTAGACTCGAG
515 TT-TTTAGGGGAGGTCAGACTCAAG
* * * * * *
145289 AAAATTTTGATTCACTTTATTGCTCTTCAGGGAAGATTAAATCAAACATTATTTGCTTCGCTGCT
1 AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
* * * *
145354 CTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTA-TTTTTAGGGGAGGTGAGATT
66 CTTCAGGAAGACCAAATCTG-AA-AAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACT
* ** * **
145418 CGAGAAAAAAACTTTGATTCACGTCGTTGCTCTTCATGGAAGATTGAATCGAATGTGATTTGCTT
129 CGAG--AAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTT
* * * * * * *
145483 CACTACTCTTCAGGAAGACCAAATCTGAATGTAGAAGAATATGCTCCACTACTCTTTAGGGGATG
192 CGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGGAGG
* * * *
145548 TTAGATTCGAGAAAAACTTTGATTCACTTC-GATGCTCTTCAGGGAAGATTGAATCGAATATGAT
257 TCAGACTCGAGAAAAACTTTGATTCACTTCAGCTGCTCTTCAGGGAAGATTGAATCGAACATGAT
* * * * * * * * *
145612 TTTCTTCACTGCTATCCAGGAAGACAAAATATGAAA-AATTAAGAATTTGCTCCGCTACTCTTTA
322 TTGCTTCAGTGCTCTTCAGGAAGACCAAATCTGAAAGAA-GAAGAATCTGCTCCACTACTCTTTA
* *
145676 GGGGAGGTCAGACTCGAGAAAAACTTTGATTCACTTCGA-TGCTCTTCAGGAAAGATTGAATCAA
386 GGGGAGGTCAGACTCGAGAAAAACTTTGATTCACTTC-ACTGCTCTTCAGGGAAGATTGAATCGA
** ** * ** **
145740 ATGTGATTTGCTTCATTGCTCTTCCGGAAGACCAAATCTGAAAGAAGAAGAATCTATTCTGCTAC
450 ACATGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTAC
* * *
145805 TCTTTAGGGGATGTTAGACT-AGAG
515 TTTTTAGGGGAGGTCAGACTCA-AG
* * * * ** * * *
145829 AAAAACTATGATTCACTTCCCTGCTCTTCAGGGATGATTTAATCGAATGTGATTTACTGCACTGC
1 -AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGC
* * * * * * * *
145894 TATTTAGGTAGACCAAATCTGAAAGAAGAAGAATATGCTCCTCTATTCTTTAAGGGTGGTCATAC
65 TCTTCAGGAAGACCAAATCTG-AA-AAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGAC
* * * * * ** * *
145959 TCGAGAAAAAATTTGATTCACTTCACTTCTCTTCAGGAAAGATTAAATTGAATGTTATTTACTTC
128 TCGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTC
* * * ** *
146024 ACTGCTCTTCAGGAGGACCAAATCTG--A-AAGAAGAATCTACTCTGCTACTCTTTAGGGGAGGT
193 GCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGGAGGT
* * * * *
146086 CATACTCGAGAAAAACTTTGATT-ACTTC-GCTACTCTTCAGAGAAGATTGAATCGAATATAATT
258 CAGACTCGAGAAAAACTTTGATTCACTTCAGCTGCTCTTCAGGGAAGATTGAATCGAACATGATT
* * * * * * * * *
146149 TGCTTAACTACTCTTCTGGAATACCAAATATGAAAGAAGAAGAATCTTCTCCGCTACTCTTTACG
323 TGCTTCAGTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTCTTTAGG
* * **
146214 GGAGGTCAGACTCGAGAAAAACTTTAATTCACTTCACTGTTCTTCAGGGAAGATTGAATCGAATG
388 GGAGGTCAGACTCGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACA
* * * * * *
146279 TGATTTTCTTCACTTCTCTTCAGGAAGACCAAATCTGAAA-AGGAAGAATCTGCTCCGCTACTAT
453 TGATTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTT
* *
146343 TTAGGGGAGGTCAGAATCGAG
518 TTAGGGGAGGTCAGACTCAAG
* ** *
146364 AAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTAAATCGAATGTGATTTGCTT-GACTA
1 -AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCG-CTG
* * * **
146428 CTCTTCCGGGAA-ACCAAATCTAAAAGATGAAGAAT-TAGCTCTC-TTTTTCTTTAGGGGAGGTC
64 CTCTT-CAGGAAGACCAAATCTGAAA-A-GAAGAATAT-GCTC-CACTACTCTTTAGGGGAGGTC
* * * * * ** ** *
146490 AGAATCGAGAAAAACTTTGATTCACTTCGCTTCTCTTCAGGGAATATTTAATTAAATGTGATTTA
124 AGACTCGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTG
* * * ** *
146555 CTTCACTGATCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATATGCTCCGTTACTCTTTAGGGG
189 CTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGG
* * **
146620 AGGTCAGACTCGAGAAAAACTTTGATTCACTT-TGCTGCTCTTCAAGGAAGATTGAATCGAATGT
254 AGGTCAGACTCGAGAAAAACTTTGATTCACTTCAGCTGCTCTTCAGGGAAGATTGAATCGAACAT
* * ** * * *
146684 AATTTGGTTCACAGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAAAATATGCTCCGCTACTCTT
319 GATTTGCTTCAGTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTCTT
* * *
146749 TAAGGGAGGTCAGTCTCGAG-AAAATTTTGATTCA
384 TAGGGGAGGTCAGACTCGAGAAAAACTTTGATTCA
146783 TTCTACCACT
Statistics
Matches: 5688, Mismatches: 958, Indels: 475
0.80 0.13 0.07
Matches are distributed among these distances:
530 7 0.00
531 15 0.00
532 55 0.01
533 93 0.02
534 49 0.01
535 232 0.04
536 657 0.12
537 281 0.05
538 642 0.11
539 1858 0.33
540 668 0.12
541 331 0.06
542 318 0.06
543 449 0.08
544 29 0.01
545 4 0.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (538 bp):
AAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCTGCT
CTTCAGGAAGACCAAATCTGAAAAGAAGAATATGCTCCACTACTCTTTAGGGGAGGTCAGACTCG
AGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGCTTCGCT
GCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTAGGGGAGGTCAG
ACTCGAGAAAAACTTTGATTCACTTCAGCTGCTCTTCAGGGAAGATTGAATCGAACATGATTTGC
TTCAGTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTCTTTAGGGGA
GGTCAGACTCGAGAAAAACTTTGATTCACTTCACTGCTCTTCAGGGAAGATTGAATCGAACATGA
TTTGCTTCGCTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTACTTTTTA
GGGGAGGTCAGACTCAAG
Found at i:147513 original size:45 final size:45
Alignment explanation
Indices: 147462--147576 Score: 167
Period size: 45 Copynumber: 2.6 Consensus size: 45
147452 CGAGAAATTC
** *
147462 AAGTTAAGAATGACATCACTAAAAGGTTGACTTCTCTTCACGAGA
1 AAGTTAAGAAAAACACCACTAAAAGGTTGACTTCTCTTCACGAGA
147507 AAGTTAAGAAAAACACCACTAAAAGGTTGACTTCTCTTCACGAGA
1 AAGTTAAGAAAAACACCACTAAAAGGTTGACTTCTCTTCACGAGA
* * **
147552 AAGTCAAGTAAAACAATACTAAAAG
1 AAGTTAAGAAAAACACCACTAAAAG
147577 ATCGACTCTT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.23
Consensus pattern (45 bp):
AAGTTAAGAAAAACACCACTAAAAGGTTGACTTCTCTTCACGAGA
Found at i:147787 original size:45 final size:45
Alignment explanation
Indices: 147710--147847 Score: 163
Period size: 45 Copynumber: 3.1 Consensus size: 45
147700 AAATCAATTT
* * * *
147710 CTCTTCGCGAGAAAGTTAAGAACA-ACACCACTAAAAGGTTGACTT
1 CTCTTCGCGAGAAAGTCAAGAA-AGACAACACTAAAAGATTGACTC
* * * * *
147755 CTCTTCACGAGAAAGTCAAGTAGGACAACACTAAAAGATCGAATC
1 CTCTTCGCGAGAAAGTCAAGAAAGACAACACTAAAAGATTGACTC
*
147800 CTCTTCGTGAGAAAGTCAAGAAAGACAACACT-AAAGATTGACTC
1 CTCTTCGCGAGAAAGTCAAGAAAGACAACACTAAAAGATTGACTC
147844 CTCT
1 CTCT
147848 ATCAATCTAT
Statistics
Matches: 77, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
44 14 0.18
45 63 0.82
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.21
Consensus pattern (45 bp):
CTCTTCGCGAGAAAGTCAAGAAAGACAACACTAAAAGATTGACTC
Found at i:149656 original size:2 final size:2
Alignment explanation
Indices: 149649--149694 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
149639 TCAACTTTAT
149649 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
149691 TA TA
1 TA TA
149695 ATCACCTTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:152036 original size:15 final size:17
Alignment explanation
Indices: 152018--152053 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
152008 ATAAAGAAAA
152018 TAAAAA-TGCATAAA-T
1 TAAAAAGTGCATAAAGT
152033 TAAAAAGTGCATAAAGT
1 TAAAAAGTGCATAAAGT
152050 TAAA
1 TAAA
152054 TAGAAGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 8 0.42
17 5 0.26
ACGTcount: A:0.58, C:0.06, G:0.11, T:0.25
Consensus pattern (17 bp):
TAAAAAGTGCATAAAGT
Found at i:152397 original size:127 final size:129
Alignment explanation
Indices: 152266--152509 Score: 341
Period size: 127 Copynumber: 1.9 Consensus size: 129
152256 AATAGAGACG
* * *
152266 GAACCATAATAATGTGGATCATACTATGGATCGGGTCACCACAAGGTCG-ATTCAAATATTAGAA
1 GAACCATAATAATGTGGATCATACCACGAATCGGGTCACCACAAGGTCGAATT-AAATATTAGAA
* * *
152330 ATAATAAATAAAT-A-AACAATGGTTAGAGTGCAATAAAATAAAAGTTAGTAGTTAGCATAGTTC
65 ACAATAAATAAATAATAACAATGGATAAAGTGCAATAAAATAAAAGTTAGTAGTTAGCATAGTTC
* * *
152393 GAACCATAATAATGTGGATCATACCCCGAATCTGGTCACCACAAGGTCGAATTGAATATTAGAAA
1 GAACCATAATAATGTGGATCATACCACGAATCGGGTCACCACAAGGTCGAATTAAATATTAGAAA
* * *
152458 CAATAAATAAATAAATAACAGTGGATAAAGTGTAATAAAATAAATGTTAGTA
66 CAATAAATAAAT-AATAACAATGGATAAAGTGCAATAAAATAAAAGTTAGTA
152510 ATTAACTTGA
Statistics
Matches: 101, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
127 66 0.65
128 3 0.03
129 1 0.01
130 31 0.31
ACGTcount: A:0.45, C:0.12, G:0.17, T:0.26
Consensus pattern (129 bp):
GAACCATAATAATGTGGATCATACCACGAATCGGGTCACCACAAGGTCGAATTAAATATTAGAAA
CAATAAATAAATAATAACAATGGATAAAGTGCAATAAAATAAAAGTTAGTAGTTAGCATAGTTC
Found at i:153905 original size:139 final size:139
Alignment explanation
Indices: 153582--154284 Score: 895
Period size: 139 Copynumber: 5.1 Consensus size: 139
153572 TCAATTTGAA
* * * *
153582 GATAACTTGGTGACAACACGGTTCCTACATGATGAGGAAGTCTGATTATCTGAGGATGACACTGC
1 GATAATTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTCTGGTTATCTGAGGATGACACTGC
* * * * * * *
153647 TCCTACGCGTTGAGGAGATCTGATCGGTGGACGACA-TGTTCCTACATGATGAGGACATCTAGCT
66 TCCTACGTGATGAGGAGATCTGGTCAGTGGACGACATTGTTCCTACGTGATGAGGACGTCTAGCC
153711 GTCTTTAGG
131 GTCTTTAGG
* * * * *
153720 GATATTTTGGAGACAATACAGTTCCTACATGATGAGGAAGTCTGGTTATCTGAGGATAACACTGC
1 GATAATTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTCTGGTTATCTGAGGATGACACTGC
* * * *
153785 TCCTACGTGTTGAGGAGATCTGGTCAGTGGACGACATTGCTCCTACGCGATGAGGACGTCTATCC
66 TCCTACGTGATGAGGAGATCTGGTCAGTGGACGACATTGTTCCTACGTGATGAGGACGTCTAGCC
153850 GTCTTTAGG
131 GTCTTTAGG
* * * * * *
153859 GATAATTTGGAGATAACATGGTTCCTATGTGATGAGGAAATATGGTTATTTGAGGATGACACTGC
1 GATAATTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTCTGGTTATCTGAGGATGACACTGC
* * *
153924 TCCTACGTGATGAGAAGATCTGGTCAGTGAATGACATTGTTCCTACGTGATGAGGACGTCTAGCC
66 TCCTACGTGATGAGGAGATCTGGTCAGTGGACGACATTGTTCCTACGTGATGAGGACGTCTAGCC
*
153989 TTCTTTAGG
131 GTCTTTAGG
* * * *
153998 GATAATTTGAAGACAACACGATTCCTACGTGATGAGGAAGTCTGGTTATCTGAGGATGAAATTGC
1 GATAATTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTCTGGTTATCTGAGGATGACACTGC
* * * * *
154063 TCCTACATGATGAGGAGATTTGGTCAGTGGACGACATTGTTCATACGTGATAAGGACGTCTAGCT
66 TCCTACGTGATGAGGAGATCTGGTCAGTGGACGACATTGTTCCTACGTGATGAGGACGTCTAGCC
* *
154128 GTCTTCAAG
131 GTCTTTAGG
* * * ** *
154137 AATAATTTGGAGACAACACGGTTCCTACGTGATGAGGAAATCCGGTTATCTGAGGATGACGTTGG
1 GATAATTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTCTGGTTATCTGAGGATGACACTGC
* * * * * * *
154202 TCCTACGAGATGAGGAGATCTGGTCAGTGGATGACATTGTTCCTACGTGATAAAGATGTTTAGCT
66 TCCTACGTGATGAGGAGATCTGGTCAGTGGACGACATTGTTCCTACGTGATGAGGACGTCTAGCC
*
154267 ATCTTTAGG
131 GTCTTTAGG
*
154276 GATCATTTG
1 GATAATTTG
154285 TTTCAAGAGA
Statistics
Matches: 487, Mismatches: 77, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
138 91 0.19
139 396 0.81
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (139 bp):
GATAATTTGGAGACAACACGGTTCCTACGTGATGAGGAAGTCTGGTTATCTGAGGATGACACTGC
TCCTACGTGATGAGGAGATCTGGTCAGTGGACGACATTGTTCCTACGTGATGAGGACGTCTAGCC
GTCTTTAGG
Found at i:153934 original size:43 final size:41
Alignment explanation
Indices: 153881--153979 Score: 103
Period size: 40 Copynumber: 2.4 Consensus size: 41
153871 ATAACATGGT
* * *
153881 TCCTATGTGATGAGGAA-ATATGGTTATTTGAGGATGACACTGC
1 TCCTACGTGATGAGGAAGATATGGTCA-GTGA--ATGACACTGC
* * *
153924 TCCTACGTGATGA-GAAGATCTGGTCAGTGAATGACATTGT
1 TCCTACGTGATGAGGAAGATATGGTCAGTGAATGACACTGC
153964 TCCTACGTGATGAGGA
1 TCCTACGTGATGAGGA
153980 CGTCTAGCCT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
40 21 0.44
41 2 0.04
42 6 0.12
43 19 0.40
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (41 bp):
TCCTACGTGATGAGGAAGATATGGTCAGTGAATGACACTGC
Found at i:154437 original size:103 final size:104
Alignment explanation
Indices: 154330--154530 Score: 269
Period size: 103 Copynumber: 1.9 Consensus size: 104
154320 GTTTCGAGAC
* * * ** * *
154330 AAACAATCTCAAAGGTTTATGTTTCAAAAGAAACTGTCTCATGCGAAATGAAACTTTGTTTCGAG
1 AAACAATCTCAAAGATTTATGTTTCAAAAGAAACTGTCTCAAGAGAAACAAAACTTTCTTTCAAG
*
154395 AAAAACTGTCTCAAGCGAGAC-AAATTTTGTTTCAAGGG
66 AAAAACTGTCTCAAGCGAGACGAAACTTTGTTTCAAGGG
** ** *
154433 AAACAATCTCAATTATTTATGTTTCAAGCGAAACTGTCTCAAGAGAGACAAAACTTTCTTTCAAG
1 AAACAATCTCAAAGATTTATGTTTCAAAAGAAACTGTCTCAAGAGAAACAAAACTTTCTTTCAAG
*
154498 AGAAACTGTCTCAAGCGAGACGAAACTTTGTTT
66 AAAAACTGTCTCAAGCGAGACGAAACTTTGTTT
154531 TGAGAGAAGC
Statistics
Matches: 83, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
103 73 0.88
104 10 0.12
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (104 bp):
AAACAATCTCAAAGATTTATGTTTCAAAAGAAACTGTCTCAAGAGAAACAAAACTTTCTTTCAAG
AAAAACTGTCTCAAGCGAGACGAAACTTTGTTTCAAGGG
Found at i:154524 original size:20 final size:20
Alignment explanation
Indices: 154461--154524 Score: 53
Period size: 20 Copynumber: 3.4 Consensus size: 20
154451 ATGTTTCAAG
*
154461 CGAAACTGTCTCAAGAGAGA
1 CGAAACTGTCTCAAGCGAGA
* *** *
154481 CAAAACT-T-TCTTTCAAGA
1 CGAAACTGTCTCAAGCGAGA
154499 -GAAACTGTCTCAAGCGAGA
1 CGAAACTGTCTCAAGCGAGA
154518 CGAAACT
1 CGAAACT
154525 TTGTTTTGAG
Statistics
Matches: 30, Mismatches: 11, Indels: 6
0.64 0.23 0.13
Matches are distributed among these distances:
17 5 0.17
18 6 0.20
19 7 0.23
20 12 0.40
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (20 bp):
CGAAACTGTCTCAAGCGAGA
Found at i:154573 original size:74 final size:74
Alignment explanation
Indices: 154452--154612 Score: 268
Period size: 74 Copynumber: 2.2 Consensus size: 74
154442 CAATTATTTA
* * *
154452 TGTTTCAAGCGAAACTGTCTCAAGAGAGACAAAACTTTCTTTCAAGAGAAACTGTCTCAAGCGAG
1 TGTTTCGAGAGAAGCTGTCTCAAGAGAGACAAAACTTTCTTTCAAGAGAAACTGTCTCAAGCGAG
154517 ACGAAACTT
66 ACGAAACTT
* * *
154526 TGTTTTGAGAGAAGCTGTCTCAAGAGAGACAAAACTTTGTTTCAAGAGAAACTGTCTCAAGTGAG
1 TGTTTCGAGAGAAGCTGTCTCAAGAGAGACAAAACTTTCTTTCAAGAGAAACTGTCTCAAGCGAG
154591 ACGAAACTT
66 ACGAAACTT
154600 TGTTTCGAGAGAA
1 TGTTTCGAGAGAA
154613 ACAATCTCAA
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 80 1.00
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (74 bp):
TGTTTCGAGAGAAGCTGTCTCAAGAGAGACAAAACTTTCTTTCAAGAGAAACTGTCTCAAGCGAG
ACGAAACTT
Found at i:154622 original size:37 final size:37
Alignment explanation
Indices: 154452--154614 Score: 236
Period size: 37 Copynumber: 4.4 Consensus size: 37
154442 CAATTATTTA
*
154452 TGTTTCAAGCGAAACTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
* * *
154489 TCTTTCAAGAGAAACTGTCTCAAGCGAGACGAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
** *
154526 TGTTTTGAGAGAAGCTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
* *
154563 TGTTTCAAGAGAAACTGTCTCAAGTGAGACGAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
*
154600 TGTTTCGAGAGAAAC
1 TGTTTCAAGAGAAAC
154615 AATCTCAATG
Statistics
Matches: 110, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 110 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (37 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
Done.