Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008302.1 Hibiscus syriacus cultivar Beakdansim tig00110988_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3402722
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 14 of 17
Found at i:2646751 original size:26 final size:26
Alignment explanation
Indices: 2646715--2646767 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2646705 TCATACGAGT
* *
2646715 TCTTTAGACTATGAACTCCTTCTTCC
1 TCTTCAGACTATGAACTCATTCTTCC
2646741 TCTTCAGACTATGAACTCATTCTTCC
1 TCTTCAGACTATGAACTCATTCTTCC
2646767 T
1 T
2646768 TCATATGAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.21, C:0.30, G:0.08, T:0.42
Consensus pattern (26 bp):
TCTTCAGACTATGAACTCATTCTTCC
Found at i:2646787 original size:63 final size:65
Alignment explanation
Indices: 2646675--2646797 Score: 171
Period size: 63 Copynumber: 1.9 Consensus size: 65
2646665 TCAGACGAGT
* * * *
2646675 TCTTCAGATTATGAAACTCCTTCTTCCTCTTCATACGAGTTCTTTAGACTATGAACTCCTTCTTC
1 TCTTCAGACTATGAAACTCATTCTTCCTCTTCATACGAGTTATTCAGACTATGAA-TCCTTCTTC
2646740 C
65 C
*
2646741 TCTTCAGACTATG-AACTCATTCTT-C-CTTCATATGAGTTATTCAGACTATGAATCCTT
1 TCTTCAGACTATGAAACTCATTCTTCCTCTTCATACGAGTTATTCAGACTATGAATCCTT
2646798 TTGGAAATGT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
62 5 0.10
63 24 0.46
64 1 0.02
65 10 0.19
66 12 0.23
ACGTcount: A:0.24, C:0.26, G:0.10, T:0.41
Consensus pattern (65 bp):
TCTTCAGACTATGAAACTCATTCTTCCTCTTCATACGAGTTATTCAGACTATGAATCCTTCTTCC
Found at i:2646940 original size:72 final size:73
Alignment explanation
Indices: 2646805--2647063 Score: 302
Period size: 71 Copynumber: 3.6 Consensus size: 73
2646795 CTTTTGGAAA
* * * *
2646805 TGTTTTAAGAAAAACAATCTCAAGTAAGATAAATTGCAATTTCGAGTGAAA-TTTCTCCAGCGAG
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCAAGTGAAACTTTCTCAAGCGAG
2646869 AAATAATT
66 AAATAATT
* *
2646877 TGTTTTAAG-AAAATAATCTCGAGTGAGATAAATTGCTATTTCAAGTGAAACTTTCTCAAGCGAG
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCAAGTGAAACTTTCTCAAGCGAG
2646941 AACAT--TT
66 AA-ATAATT
*
2646948 TG-TTTAAGAAAAAAAAACAATCTCAAGTGAGATAAATT-ATA-TT-AAGTGAAAC-TTCTCAAG
1 TGTTTTAAG----AAAAACAATCTCAAGTGAGATAAATTGCTATTTCAAGTGAAACTTTCTCAAG
*
2647008 CGAGAGAAACAATT
62 C--GAGAAATAATT
**
2647022 TGTTTTAAGAAAAATGATCTCAAGTGAGATAAATTGCTATTT
1 TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTT
2647064 GAAAACCTCC
Statistics
Matches: 160, Mismatches: 13, Indels: 27
0.80 0.06 0.14
Matches are distributed among these distances:
70 6 0.04
71 73 0.46
72 35 0.22
73 11 0.07
74 6 0.04
75 29 0.18
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.31
Consensus pattern (73 bp):
TGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTGCTATTTCAAGTGAAACTTTCTCAAGCGAG
AAATAATT
Found at i:2650389 original size:2 final size:2
Alignment explanation
Indices: 2650382--2650415 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
2650372 ACAACAAAGG
2650382 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2650416 TTGAAAGGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2653345 original size:262 final size:261
Alignment explanation
Indices: 2652882--2653405 Score: 973
Period size: 262 Copynumber: 2.0 Consensus size: 261
2652872 GCTAGAGCTT
2652882 ATTTCTCATTTGTGTACACCTACGGAAAGGGTTTCAGCATTGTCTTAGATCGTGAATTTCTAGGG
1 ATTTCTCATTTGTGTACACCTACGGAAAGGGTTTCAGCATTGTCTTAGATCGTGAATTTCTAGGG
2652947 TTTATTATATGTATAGATTCATTCTATGAGTAAAGGTACTCGAATTGTCCTTGTTGTGACCCCTT
66 TTTATTATATG-ATAGATTCATTCTATGAGTAAAGGTACTCGAATTGTCCTTGTTGTGACCCCTT
2653012 GGGCTTCCAAACCCTCAATCCTAGTCCATTACAGACTTAAACAAATCGAGTTAAATTCGAGGGGA
130 GGGCTTCCAAACCCTCAATCCTAGTCCATTACAGACTTAAACAAATCGAGTTAAATTCGAGGGGA
2653077 CACATTTCTCTATGCCTGACACGGAG-A-AAATTCTCACGAAGACAAAGAGCATATGAACCTCGA
195 CACATTTCTCTATGCCTGACACGGAGAATAAATTCTCACGAAGACAAAGAGCATATGAACCTCGA
2653140 AA
260 AA
*
2653142 ATTTCTCATTTGTGTACACCTACGGACAGGGTTTCAGCATTGTCTTAGATCGTGTGAATTTCTAG
1 ATTTCTCATTTGTGTACACCTACGGAAAGGGTTTCAGCATTGTCTTAGATC--GTGAATTTCTAG
2653207 GGTTTATTATATG-TAGATTCAATTCTATGAGTAAAGGTACTCGAATTGTCCTTGTTGGTGACCC
64 GGTTTATTATATGATAGATTC-ATTCTATGAGTAAAGGTACTCGAATTGTCCTTGTT-GTGACCC
2653271 CTTGGGCTTCCAAACCCTCAATCCTAGTCCATTACAGACTTAAACAAATCGAGTTAAATTCGAGG
127 CTTGGGCTTCCAAACCCTCAATCCTAGTCCATTACAGACTTAAACAAATCGAGTTAAATTCGAGG
2653336 GGACACATTTCTCTATGCCTGACACGGAGAATAAATTCTCACGAAGACAAAGAGCATATGAACCT
192 GGACACATTTCTCTATGCCTGACACGGAGAATAAATTCTCACGAAGACAAAGAGCATATGAACCT
2653401 CGAAA
257 CGAAA
2653406 GCTACTTGCT
Statistics
Matches: 257, Mismatches: 1, Indels: 8
0.97 0.00 0.03
Matches are distributed among these distances:
260 57 0.22
261 35 0.14
262 126 0.49
263 1 0.00
264 38 0.15
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (261 bp):
ATTTCTCATTTGTGTACACCTACGGAAAGGGTTTCAGCATTGTCTTAGATCGTGAATTTCTAGGG
TTTATTATATGATAGATTCATTCTATGAGTAAAGGTACTCGAATTGTCCTTGTTGTGACCCCTTG
GGCTTCCAAACCCTCAATCCTAGTCCATTACAGACTTAAACAAATCGAGTTAAATTCGAGGGGAC
ACATTTCTCTATGCCTGACACGGAGAATAAATTCTCACGAAGACAAAGAGCATATGAACCTCGAA
A
Found at i:2654438 original size:161 final size:159
Alignment explanation
Indices: 2654147--2654445 Score: 365
Period size: 161 Copynumber: 1.9 Consensus size: 159
2654137 ATAAATAAAG
* * * *
2654147 TATTTATTTATTTAAAAATATTAGAAAATGACATCTAGTTGTTTTAAGACATCCCATTTCTTTAA
1 TATTTATTTATTTAAAAATATCAGAAAATAACATCTAGTTGCTTTAAGACAACCCATTTCTTTAA
* * **
2654212 TATTAATAAATAAATAAATATTAAAAATATGATAGTTTTTCCTAAAAATAATTTAAATAAAATAA
66 TATAAATAAATAAATAAATATTAAAAATATGATAGTTATT-CTAAAAATAAAATAAATAAAAT-A
2654277 AATAAAATATATATAAATTATAAAAGTAGGA
129 AATAAAATATATATAAATTATAAAAGTAGGA
* * *
2654308 TATTTATTTATTTATAAATATCAGAAAATAATATCTAGTTGCTTTAAGACAACCCCTTTC-TTAA
1 TATTTATTTATTTAAAAATATCAGAAAATAACATCTAGTTGCTTTAAGACAACCCATTTCTTTAA
* * *
2654372 TATAAAATAAATAAATAAATATTATTATTTAATAT-ATA-TATATT-TACAACTAAAATAAAT-A
66 TAT-AAATAAATAAATAAATATTA--A--AAATATGATAGT-TATTCTAAAAATAAAATAAATAA
2654433 AATAAATAAAATA
125 AATAAATAAAATA
2654446 ATTATTAAAT
Statistics
Matches: 118, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
160 17 0.14
161 76 0.64
162 12 0.10
163 2 0.02
164 6 0.05
165 5 0.04
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.39
Consensus pattern (159 bp):
TATTTATTTATTTAAAAATATCAGAAAATAACATCTAGTTGCTTTAAGACAACCCATTTCTTTAA
TATAAATAAATAAATAAATATTAAAAATATGATAGTTATTCTAAAAATAAAATAAATAAAATAAA
TAAAATATATATAAATTATAAAAGTAGGA
Found at i:2660068 original size:29 final size:30
Alignment explanation
Indices: 2660036--2660106 Score: 83
Period size: 32 Copynumber: 2.3 Consensus size: 30
2660026 TAAAAGTATA
2660036 CCCCTAATAACAAATA-AAAA-AAATATGAG
1 CCCCTAATAACAAATATAAAAGAAAT-TGAG
* *
2660065 CCCCAAATAACAAATATTGAAAAGAAATTGGG
1 CCCCTAATAACAAATA-T-AAAAGAAATTGAG
2660097 CCCCTAATAA
1 CCCCTAATAA
2660107 TAGGTATTAG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
29 15 0.43
32 16 0.46
33 4 0.11
ACGTcount: A:0.52, C:0.20, G:0.10, T:0.18
Consensus pattern (30 bp):
CCCCTAATAACAAATATAAAAGAAATTGAG
Found at i:2660252 original size:28 final size:31
Alignment explanation
Indices: 2660214--2660284 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 31
2660204 AAGAGTAGGC
2660214 CTCA-AATAATAAATATT-A-AAAAATTAAA
1 CTCATAATAATAAATATTGAGAAAAATTAAA
2660242 C-CATAATAATAAATATTGAGAAAAATTAAA
1 CTCATAATAATAAATATTGAGAAAAATTAAA
*
2660272 CTCTTAATAATAA
1 CTCATAATAATAA
2660285 GTTAAAAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
27 2 0.05
28 14 0.37
29 1 0.03
30 11 0.29
31 10 0.26
ACGTcount: A:0.59, C:0.08, G:0.03, T:0.30
Consensus pattern (31 bp):
CTCATAATAATAAATATTGAGAAAAATTAAA
Found at i:2666597 original size:23 final size:21
Alignment explanation
Indices: 2666546--2666600 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
2666536 CCACTACTGG
* *
2666546 GAGTATCGATACTCTACCCCT
1 GAGTATCGATACTCCACCCAT
2666567 -AGTATCGATACTCCCATCCCAT
1 GAGTATCGATACT-CCA-CCCAT
2666589 GAGTATCGATAC
1 GAGTATCGATAC
2666601 CATAATTACC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 12 0.41
21 2 0.07
22 4 0.14
23 11 0.38
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (21 bp):
GAGTATCGATACTCCACCCAT
Found at i:2668673 original size:46 final size:46
Alignment explanation
Indices: 2668562--2668673 Score: 113
Period size: 46 Copynumber: 2.4 Consensus size: 46
2668552 AACACATTGT
* * *
2668562 GGATGCTAAACTCTC-CCTTCAAAATTGACCTAGATAAAAGTGGTGA
1 GGATACTAAACTCTCACC-TCAAAATTAACCTAGATAAAAGAGGTGA
* * *
2668608 GGATAATCAAAAT-TTACCTCAAAATTAACCTAGATAAAAGAGGTGAA
1 GGATACT-AAACTCTCACCTCAAAATTAACCTAGATAAAAGAGGTG-A
*
2668655 TG-TACTAAACTCTCACCTC
1 GGATACTAAACTCTCACCTC
2668674 CTCAAAGTAA
Statistics
Matches: 52, Mismatches: 10, Indels: 8
0.74 0.14 0.11
Matches are distributed among these distances:
45 4 0.08
46 40 0.77
47 8 0.15
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (46 bp):
GGATACTAAACTCTCACCTCAAAATTAACCTAGATAAAAGAGGTGA
Found at i:2674084 original size:4 final size:4
Alignment explanation
Indices: 2674071--2674116 Score: 51
Period size: 4 Copynumber: 11.8 Consensus size: 4
2674061 ATTTTCTCAT
* *
2674071 TTTA -TTA TTTA TTTA -ATA TTTA TTTA TTTA TTTTA TTCA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTT
2674117 TCATTAATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
3 5 0.14
4 26 0.74
5 4 0.11
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:2674107 original size:13 final size:13
Alignment explanation
Indices: 2674075--2674117 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
2674065 TCTCATTTTA
2674075 TTATTTATTTAATAT
1 TTATTTATTT-AT-T
2674090 TTATTTATTTATT
1 TTATTTATTTATT
*
2674103 TTATTCATTTATT
1 TTATTTATTTATT
2674116 TT
1 TT
2674118 CATTAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 15 0.56
14 2 0.07
15 10 0.37
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (13 bp):
TTATTTATTTATT
Found at i:2680881 original size:23 final size:23
Alignment explanation
Indices: 2680837--2680881 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
2680827 ATAAACCTTT
*
2680837 TTATTTTAGGATTTTTAGTTTAA
1 TTATTTTAGGATTATTAGTTTAA
** *
2680860 TTATTTTATTATTATTATTTTA
1 TTATTTTAGGATTATTAGTTTA
2680882 TTTAAGAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (23 bp):
TTATTTTAGGATTATTAGTTTAA
Found at i:2681742 original size:14 final size:14
Alignment explanation
Indices: 2681711--2681750 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
2681701 CTCATTGTTA
2681711 TTATTTATTTCATAT
1 TTATTTATTT-ATAT
*
2681726 TTATTTATTTATTT
1 TTATTTATTTATAT
*
2681740 TTATTAATTTA
1 TTATTTATTTA
2681751 ATTCCTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATTTATTTATAT
Found at i:2686151 original size:13 final size:12
Alignment explanation
Indices: 2686119--2686153 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
2686109 AATTCCGTTA
*
2686119 TATTTTTATTTT
1 TATTTTTTTTTT
*
2686131 TATTTTTTCTTT
1 TATTTTTTTTTT
2686143 TATTTTTTTTT
1 TATTTTTTTTT
2686154 CGATTAAGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (12 bp):
TATTTTTTTTTT
Found at i:2686981 original size:19 final size:21
Alignment explanation
Indices: 2686957--2687007 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 21
2686947 ATTCTCCATC
*
2686957 GAAAAAAAAAAC-GTT-GAAT
1 GAAAAAAAAAACTGTTCGAAA
2686976 G-AAAAAAAAACTGTTCGAAA
1 GAAAAAAAAAACTGTTCGAAA
2686996 GAAAAAGAAAAA
1 GAAAAA-AAAAA
2687008 AACATGAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 10 0.37
19 4 0.15
20 4 0.15
21 4 0.15
22 5 0.19
ACGTcount: A:0.67, C:0.06, G:0.16, T:0.12
Consensus pattern (21 bp):
GAAAAAAAAAACTGTTCGAAA
Found at i:2691368 original size:3 final size:3
Alignment explanation
Indices: 2691362--2691409 Score: 71
Period size: 3 Copynumber: 15.7 Consensus size: 3
2691352 AAAAGAAAAA
2691362 AAT AAT AAGT AAT AAGT AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AA-T AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
2691408 AA
1 AA
2691410 ATAAGTACAA
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.05
3 34 0.81
4 6 0.14
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:2691622 original size:2 final size:2
Alignment explanation
Indices: 2691611--2691672 Score: 117
Period size: 2 Copynumber: 31.5 Consensus size: 2
2691601 TTTTAAAAAC
2691611 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2691652 TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
2691673 GCTTTCAAAC
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 58 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2691630 original size:75 final size:77
Alignment explanation
Indices: 2691455--2691626 Score: 234
Period size: 71 Copynumber: 2.3 Consensus size: 77
2691445 TAAAAAATAA
* * *
2691455 TTTTCAAAACTATAAA--ATATATATTTTCAAAAATTGTTTTAAAAACATATATATTACATATAT
1 TTTTAAAAACTATATATTATATATATTTTCAAAAATTGTTTTAAAAACATATATATTACACATAT
2691518 TTTTCAAAAACG
66 TTTTCAAAAACG
*
2691530 TTTTAAAAACTATATATTATATATATTTTC-AAAA-TGTTTT-AAAA-ATATATATTATACATA-
1 TTTTAAAAACTATATATTATATATATTTTCAAAAATTGTTTTAAAAACATATATATTACACATAT
*
2691590 TTTTC-AAAATG
66 TTTTCAAAAACG
*
2691601 TTTTAAAAACTATATAATATATATAT
1 TTTTAAAAACTATATATTATATATAT
2691627 ATATATATAT
Statistics
Matches: 89, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
71 30 0.34
72 5 0.06
73 14 0.16
74 4 0.04
75 20 0.22
76 4 0.04
77 12 0.13
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (77 bp):
TTTTAAAAACTATATATTATATATATTTTCAAAAATTGTTTTAAAAACATATATATTACACATAT
TTTTCAAAAACG
Found at i:2691649 original size:71 final size:72
Alignment explanation
Indices: 2691422--2691662 Score: 188
Period size: 71 Copynumber: 3.3 Consensus size: 72
2691412 AAGTACAATA
* * ** * *
2691422 AAAAAT-TATATAATATATATGTTTAAAAAATAATTTTCAAAACTATA-AA-ATATATATTTTCA
1 AAAAATATATATTATATATAT-TTTCAAAAA-CGTTTTAAAAACTATATAATATATATATTATC-
* *
2691484 AAAATTGTTTT
63 AAAA-TGATAT
* * *
2691495 AAAAACATATATATTACATATATTTTTCAAAAACGTTTTAAAAACTATATATTATATATATTTTC
1 -AAAA-ATATATATTATATATA-TTTTCAAAAACGTTTTAAAAACTATATAATATATATATTATC
* *
2691560 AAAATGTTTT
63 AAAATGATAT
* *
2691570 AAAAATATATATTATACATATTTTC-AAAATGTTTTAAAAACTATATAATATATATATATAT-AT
1 AAAAATATATATTATATATATTTTCAAAAACGTTTTAAAAACTATATAATATATATAT-TATCA-
*
2691633 ATAT-ATAT
64 AAATGATAT
* *
2691641 ATATATATATATATATATATAT
1 AAAAATATATAT-TATATATAT
2691663 ATATATATAT
Statistics
Matches: 141, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
71 43 0.30
72 18 0.13
73 14 0.10
74 8 0.06
75 21 0.15
76 24 0.17
77 13 0.09
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (72 bp):
AAAAATATATATTATATATATTTTCAAAAACGTTTTAAAAACTATATAATATATATATTATCAAA
ATGATAT
Found at i:2691700 original size:36 final size:35
Alignment explanation
Indices: 2691660--2691745 Score: 93
Period size: 36 Copynumber: 2.4 Consensus size: 35
2691650 TATATATATA
* * *
2691660 TATATATATATATGCTTTCAAACATGTTTTCAAAAC
1 TATATATAAATATGATTTCAAAAATGTTTTC-AAAC
*
2691696 TATATATTAAATAT-ATTTTAAAAATGTTTTCAAAC
1 TATATA-TAAATATGATTTCAAAAATGTTTTCAAAC
*
2691731 TATATAATACATATG
1 TATAT-ATAAATATG
2691746 TATATATATA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
35 15 0.36
36 21 0.50
37 6 0.14
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.43
Consensus pattern (35 bp):
TATATATAAATATGATTTCAAAAATGTTTTCAAAC
Found at i:2691755 original size:120 final size:116
Alignment explanation
Indices: 2691540--2691761 Score: 329
Period size: 120 Copynumber: 1.9 Consensus size: 116
2691530 TTTTAAAAAC
* *
2691540 TATATATTATATATATTTTCAAAATGTTTTAAAAATATATATTATACATATTTTCAAAATGTTTT
1 TATATATTATATATATTTTCAAAATGTTTTAAAAATATATATTAAACATATTTTAAAAATGTTTT
*
2691605 AAAAACTATATAATATATATATATATATATATATATATATATATATATATA
66 AAAAACTATATAATACATATATATATATATATATATATATATATATATATA
* *
2691656 TATATATATATATATATGCTTTCAAACATGTTTTCAAAACTATATATTAAATATATTTTAAAAAT
1 TATATAT-TATATATAT--TTTCAAA-ATGTTTT-AAAAATATATATTAAACATATTTTAAAAAT
* *
2691721 GTTTT-CAAACTATATAATACATATGTATATATATATATATA
61 GTTTTAAAAACTATATAATACATATATATATATATATATATA
2691762 AATGGGACAA
Statistics
Matches: 94, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
116 7 0.07
117 9 0.10
119 7 0.07
120 40 0.43
121 31 0.33
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (116 bp):
TATATATTATATATATTTTCAAAATGTTTTAAAAATATATATTAAACATATTTTAAAAATGTTTT
AAAAACTATATAATACATATATATATATATATATATATATATATATATATA
Found at i:2692696 original size:84 final size:84
Alignment explanation
Indices: 2692311--2693280 Score: 887
Period size: 84 Copynumber: 11.7 Consensus size: 84
2692301 GTCTCTGAGT
* * ** * * *
2692311 TGAGTGTAATCGAACTCGAAGGTCTTCAGTTGGCAGATAACCCTTCTGGACTTAAGCTATGCTAC
1 TGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGC
*
2692376 AAATGATGTGCCTTAGAGC
66 AAATGATGTGCCTTGGAGC
* * * * * *
2692395 TGAGCGTAGTCGAACTCGAAGGTCTTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTATACTGT
1 TGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGC
* *
2692459 AAATGATGTGTCTTAGAGC
66 AAATGATGTGCCTTGGAGC
* * * * * * *
2692478 TAAGCGTAGTCGAACTCGAAGGTCTTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTATGTTGT
1 TGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGC
* *
2692542 AAATGATGTGCCCTCGAAGC
66 AAATGATGTG-CCTTGGAGC
* * * *
2692562 TGAGTGTAATCGAACTCGAGGGTC-TT-G--GGCAGATAGCCCTTCTCGACTTAAGTTATGCTGC
1 TGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGC
* *
2692623 AAATGATATTCCTTGGAGC
66 AAATGATGTGCCTTGGAGC
2692642 TGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGC
1 TGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGC
* *
2692707 AAATGATATTCCTTGGAGC
66 AAATGATGTGCCTTGGAGC
* * * * * *
2692726 TAAGCATAGTCGAACTCGAAGGTCTTTTAG-TGACAGATAACCCTTC-CAGCCTTGAGTTATGCT
1 TGAGCGTAGTCGAACTCGAAGGTC-TTTGGTTGGCAGATAACCCTTCTC-GACTTAAGTTATGCT
* *
2692789 GTAAATGATGTGCCCTTGAAGC
64 GCAAATGATGTG-CCTTGGAGC
* * * * * * *
2692811 TGAGTGTAATGGAACTCGAGGGTC--T--TTGGCAGATATCCCTTATCGACTTAAGCTATGCTGC
1 TGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGC
* *
2692872 AAATGATATGCCTTAGAGC
66 AAATGATGTGCCTTGGAGC
* * *
2692891 TGAGCGTAGTCAAACTCGAAGGTCTTTGGTTGGAAGATAACCCTTTTCGACTTAAGTTATGCTGC
1 TGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGC
2692956 AAATGATGTGCCTTGGAGC
66 AAATGATGTGCCTTGGAGC
* * * * * * * *
2692975 TGAGCGTTGTCAAACTCGAAGGTCTTTTGG-TGACAGATAGCCCTTCTAGCCTTGAGTTATACTG
1 TGAGCGTAGTCGAACTCGAAGGTC-TTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTG
* * * *** *
2693039 TAAATGATATTCCCTCCAAGT
65 CAAATGAT-GTGCCTTGGAGC
* * * * * * * *
2693060 TGAGTGTAATCGAACTCGAGGGTC--T--TTGGCAGATAGCCCTTCTTGACCTAAGATATG-TCA
1 TGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCT-G
*
2693120 CAAATGATGTGCCTTTGAGC
65 CAAATGATGTGCCTTGGAGC
* * * * * * * * *
2693140 TGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGATTTATACTGC
1 TGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGC
* *
2693205 AAATGATGTGCCCTCGAAGC
66 AAATGATGTG-CCTTGGAGC
* ** * * * *
2693225 TGAGTGTAGTCGAACTTAAAAGTCTTTGGATGGAAGATAGCCCTTCTCGACTTAAG
1 TGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAG
2693281 CTATTCTGTA
Statistics
Matches: 723, Mismatches: 139, Indels: 47
0.80 0.15 0.05
Matches are distributed among these distances:
80 83 0.11
81 103 0.14
82 7 0.01
83 119 0.16
84 301 0.42
85 110 0.15
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31
Consensus pattern (84 bp):
TGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGC
AAATGATGTGCCTTGGAGC
Found at i:2692828 original size:249 final size:249
Alignment explanation
Indices: 2692311--2693240 Score: 1238
Period size: 249 Copynumber: 3.7 Consensus size: 249
2692301 GTCTCTGAGT
* * *
2692311 TGAGTGTAATCGAACTCGAAGGTCTTCAGTTGGCAGATAACCCTTCTGGACTTAAGCTATGCTAC
1 TGAGTGTAATCGAACTCGAGGGTCTT--G--GGCAGATAGCCCTTCTCGACTTAAGCTATGCTAC
* * *
2692376 AAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-TGACAGATAACCCTTC
62 AAATGATATGCCTTAGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTC
* * * *
2692440 TAGCCTTGAGTTATACTGTAAATGATGTGT-CTTAGAGCTAAGCGTAGTCGAACTCGAAGGTC-T
127 TAGACTTAAGTTATACTGCAAATGATGT-TCCTTGGAGCTAAGCGTAGTCGAACTCGAAGGTCTT
*
2692503 TTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATGTGCCCTCGAAGC
191 TTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGC
* *
2692562 TGAGTGTAATCGAACTCGAGGGTCTTGGGCAGATAGCCCTTCTCGACTTAAGTTATGCTGCAAAT
1 TGAGTGTAATCGAACTCGAGGGTCTTGGGCAGATAGCCCTTCTCGACTTAAGCTATGCTACAAAT
* * * *
2692627 GATATTCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGA
66 GATATGCCTTAGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGA
* * * *
2692692 CTTAAGTTATGCTGCAAATGATATTCCTTGGAGCTAAGCATAGTCGAACTCGAAGGTCTTTTAGT
131 CTTAAGTTATACTGCAAATGATGTTCCTTGGAGCTAAGCGTAGTCGAACTCGAAGGTCTTTTGGT
* *
2692757 GACAGATAACCCTTCCAGCCTTGAGTTATGCTGTAAATGATGTGCCCTTGAAGC
196 GACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGC
* * * * *
2692811 TGAGTGTAATGGAACTCGAGGGTCTTTGGCAGATATCCCTTATCGACTTAAGCTATGCTGCAAAT
1 TGAGTGTAATCGAACTCGAGGGTCTTGGGCAGATAGCCCTTCTCGACTTAAGCTATGCTACAAAT
* * *
2692876 GATATGCCTTAGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTGGTTGGAAGATAACCCTTTTCGA
66 GATATGCCTTAGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGA
* * * * *
2692941 CTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTTGTCAAACTCGAAGGTCTTTTGGT
131 CTTAAGTTATACTGCAAATGATGTTCCTTGGAGCTAAGCGTAGTCGAACTCGAAGGTCTTTTGGT
* * * * * *
2693006 GACAGATAGCCCTTCTAGCCTTGAGTTATACTGTAAATGATATTCCCTCCAAGT
196 GACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGC
* * * *
2693060 TGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTTGACCTAAGATATG-TCACAAA
1 TGAGTGTAATCGAACTCGAGGGTCTTGGGCAGATAGCCCTTCTCGACTTAAGCTATGCT-ACAAA
* * * * *
2693124 TGATGTGCCTTTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAG
65 TGATATGCCTTAGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAG
* * * * * * * *
2693189 CCTTGATTTATACTGCAAATGATGTGCCCTCGAAGCTGAGTGTAGTCGAACT
130 ACTTAAGTTATACTGCAAATGATGT-TCCTTGGAGCTAAGCGTAGTCGAACT
2693241 TAAAAGTCTT
Statistics
Matches: 603, Mismatches: 71, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
247 76 0.13
248 68 0.11
249 414 0.69
250 20 0.03
251 25 0.04
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (249 bp):
TGAGTGTAATCGAACTCGAGGGTCTTGGGCAGATAGCCCTTCTCGACTTAAGCTATGCTACAAAT
GATATGCCTTAGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGA
CTTAAGTTATACTGCAAATGATGTTCCTTGGAGCTAAGCGTAGTCGAACTCGAAGGTCTTTTGGT
GACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGC
Found at i:2692842 original size:165 final size:163
Alignment explanation
Indices: 2692311--2693280 Score: 823
Period size: 165 Copynumber: 5.8 Consensus size: 163
2692301 GTCTCTGAGT
* * * * *
2692311 TGAGTGTAATCGAACTCGAAGGTCTTCAGTTGGCAGATAACCCTTCTGGACTTAAGCTATGCTAC
1 TGAGCGTAGTCGAACTCGAAGGTCTT---TTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGC
*
2692376 AAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCT
63 AAATGATATGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAACCCTTC-
* * * * * *
2692441 AGCCTTGAGTTATACTGTAAATGATGTGTCTT-AGAGC
127 CGACTTAAGTTATGCTGCAAATGATGTGCCTTGA-AGC
* * * * * *
2692478 TAAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGTTGTA
1 TGAGCGTAGTCGAACTCGAAGGTCTTT--TGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCA
* * * * * * *
2692543 AATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTC-TTGG-G-CAGATAGCCCTTCT
64 AATGATATGCCTTAG-AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAACCCTTC-
* * *
2692605 CGACTTAAGTTATGCTGCAAATGATATTCCTTGGAGC
127 CGACTTAAGTTATGCTGCAAATGATGTGCCTTGAAGC
*
2692642 TGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGC
1 TGAGCGTAGTCGAACTCGAAGGTC-TT--TTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGC
* * * * *
2692707 AAATGATATTCCTTGGAGCTAAGCATAGTCGAACTCGAAGGTCTTTTAGTGACAGATAACCCTTC
63 AAATGATATGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTGACAGATAACCCTTC
* * *
2692772 CAGCCTTGAGTTATGCTGTAAATGATGTGCCCTTGAAGC
127 C-GACTTAAGTTATGCTGCAAATGATGTG-CCTTGAAGC
* * * * * * * *
2692811 TGAGTGTAATGGAACTCGAGGGTC-TTTGGCAGATATCCCTTATCGACTTAAGCTATGCTGCAAA
1 TGAGCGTAGTCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAA
* *
2692875 TGATATGCCTTAGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTGGTTGGA-AGATAACCCTTTTC
66 TGATATGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-T-GACAGATAACCC-TTCC
*
2692939 GACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGC
128 GACTTAAGTTATGCTGCAAATGATGTGCCTTGAAGC
* * * * * * *
2692975 TGAGCGTTGTCAAACTCGAAGGTCTTTTGGTGACAGATAGCCCTTCTAGCCTTGAGTTATACTGT
1 TGAGCGTAGTCGAACTCGAAGGTCTTTT-G-G-CAGATAACCCTTCTAGACTTAAGTTATGCTGC
* * * * * * *
2693040 AAATGATATTCCCTCCA-AGTTGAGTGTAATCGAACTCGAGGGTCTTT-G-G-CAGATAGCCCTT
63 AAATGATA-TGCCT-TAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAACCCTT
* * * *
2693101 CTTGACCTAAGATATG-TCACAAATGATGTGCCTTTG-AGC
126 C-CGACTTAAGTTATGCT-GCAAATGATGTGCC-TTGAAGC
* * * * * * *
2693140 TGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGATTTATACTGC
1 TGAGCGTAGTCGAACTCGAAGGTC--TT-TTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGC
* * * * ** * *
2693205 AAATGATGTGCCCTCGAAGCTGAGTGTAGTCGAACTTAAAAGTCTTTGGATGGA-AGATAGCCCT
63 AAATGATATGCCTTAG-AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-T-GACAGATAACCCT
2693269 TCTCGACTTAAG
125 TC-CGACTTAAG
2693281 CTATTCTGTA
Statistics
Matches: 653, Mismatches: 114, Indels: 70
0.78 0.14 0.08
Matches are distributed among these distances:
164 122 0.19
165 269 0.41
166 59 0.09
167 55 0.08
168 69 0.11
169 78 0.12
170 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31
Consensus pattern (163 bp):
TGAGCGTAGTCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAA
TGATATGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCCGAC
TTAAGTTATGCTGCAAATGATGTGCCTTGAAGC
Found at i:2698395 original size:34 final size:35
Alignment explanation
Indices: 2698319--2698396 Score: 90
Period size: 34 Copynumber: 2.3 Consensus size: 35
2698309 AAAAATAAAT
*
2698319 ATTAAATAACTCAAAGAGGAAAAAAAGAAAAAGAA
1 ATTAAATAAATCAAAGAGGAAAAAAAGAAAAAGAA
* * *
2698354 AAT-AATAAATCAAA-AGGAAAAAATGTATAAA-AA
1 ATTAAATAAATCAAAGAGGAAAAAAAG-AAAAAGAA
2698387 ATTAAATAAA
1 ATTAAATAAA
2698397 ATTAAATAGA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
33 14 0.39
34 20 0.56
35 2 0.06
ACGTcount: A:0.69, C:0.04, G:0.10, T:0.17
Consensus pattern (35 bp):
ATTAAATAAATCAAAGAGGAAAAAAAGAAAAAGAA
Found at i:2699698 original size:13 final size:14
Alignment explanation
Indices: 2699668--2699699 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
2699658 GAAAAAGAAA
2699668 AAATAATAAGTAAT
1 AAATAATAAGTAAT
2699682 -AATAATAA-TAAT
1 AAATAATAAGTAAT
2699694 AAATAA
1 AAATAA
2699700 GTACAATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (14 bp):
AAATAATAAGTAAT
Found at i:2699750 original size:37 final size:36
Alignment explanation
Indices: 2699709--2699984 Score: 308
Period size: 36 Copynumber: 7.6 Consensus size: 36
2699699 AGTACAATAG
* * * *
2699709 AAAACTATATAATATATATGTTTAAAAAATAATTTTC
1 AAAACTATATAATATATATATTTTAAAAAT-GTTTTA
2699746 AAAACTATA-AA-ATATATATTTTCAAAAATTGTTTT-
1 AAAACTATATAATATATATATTTT-AAAAA-TGTTTTA
* *
2699781 AAAACTTATATATTATATATACTTTTCAAAATCGTTTTA
1 AAAAC-TATATAATATATATA-TTTTAAAAAT-GTTTTA
* *
2699820 AAAACTATATATTATATATATTTTCAAAATGTTTTA
1 AAAACTATATAATATATATATTTTAAAAATGTTTTA
* * *
2699856 AAAACTATATATTATACATATTTTCAAAATGTTTTA
1 AAAACTATATAATATATATATTTTAAAAATGTTTTA
* * * *
2699892 AAAACTATATAATATATATGCTTTCAAACATGTTTTC
1 AAAACTATATAATATATAT-ATTTTAAAAATGTTTTA
*
2699929 AAAACTATATATTATATATATTTTAAAAATGTTTT-
1 AAAACTATATAATATATATATTTTAAAAATGTTTTA
*
2699964 CAAACTATATAATATATATAT
1 AAAACTATATAATATATATAT
2699985 ATATATAATG
Statistics
Matches: 211, Mismatches: 19, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
35 33 0.16
36 86 0.41
37 52 0.25
38 31 0.15
39 9 0.04
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.44
Consensus pattern (36 bp):
AAAACTATATAATATATATATTTTAAAAATGTTTTA
Found at i:2699828 original size:74 final size:71
Alignment explanation
Indices: 2699709--2699982 Score: 320
Period size: 73 Copynumber: 3.8 Consensus size: 71
2699699 AGTACAATAG
* * ** * *
2699709 AAAACTATATAATATATATGTTTAAAAAATAATTTTCAAAACTATAAAATATATATTTTCAAAAA
1 AAAACTATATATTATATATATTTTCAAAAT-GTTTTAAAAACTATAAAATATATATTTTCAAAAA
2699774 TTGTTTT-
65 -TGTTTTA
*
2699781 AAAACTTATATATTATATATACTTTTCAAAATCGTTTTAAAAACTATATATTATATATATTTTC-
1 AAAAC-TATATATTATATATA-TTTTCAAAAT-GTTTTAAAAACTATA-A-AATATATATTTTCA
2699845 AAAATGTTTTA
61 AAAATGTTTTA
* * *
2699856 AAAACTATATATTATACATATTTTCAAAATGTTTTAAAAACTATATAATATATATGCTTTCAAAC
1 AAAACTATATATTATATATATTTTCAAAATGTTTTAAAAACTATAAAATATATAT--TTTCAAAA
*
2699921 ATGTTTTC
64 ATGTTTTA
* * *
2699929 AAAACTATATATTATATATATTTTAAAAATGTTTT-CAAACTATATAATATATAT
1 AAAACTATATATTATATATATTTTCAAAATGTTTTAAAAACTATAAAATATATAT
2699983 ATATATATAA
Statistics
Matches: 178, Mismatches: 16, Indels: 16
0.85 0.08 0.08
Matches are distributed among these distances:
70 8 0.04
72 42 0.24
73 65 0.37
74 41 0.23
75 10 0.06
76 12 0.07
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.44
Consensus pattern (71 bp):
AAAACTATATATTATATATATTTTCAAAATGTTTTAAAAACTATAAAATATATATTTTCAAAAAT
GTTTTA
Found at i:2703155 original size:16 final size:17
Alignment explanation
Indices: 2703134--2703167 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
2703124 GTGCACAACC
2703134 TCTATAG-ACTCACATA
1 TCTATAGTACTCACATA
*
2703150 TCTATAGTTCTCACATA
1 TCTATAGTACTCACATA
2703167 T
1 T
2703168 GTTCATGGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (17 bp):
TCTATAGTACTCACATA
Found at i:2714354 original size:32 final size:32
Alignment explanation
Indices: 2714318--2714381 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
2714308 GATGGCTGAA
*
2714318 AATTTTCTTTCTCTTGATCATTCTAGTGTTAT
1 AATTTTCTTTCTATTGATCATTCTAGTGTTAT
2714350 AATTTTCTTTCTATTGATCATTCTAGTGTTAT
1 AATTTTCTTTCTATTGATCATTCTAGTGTTAT
2714382 CTTATTATGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.20, C:0.14, G:0.09, T:0.56
Consensus pattern (32 bp):
AATTTTCTTTCTATTGATCATTCTAGTGTTAT
Found at i:2716967 original size:19 final size:20
Alignment explanation
Indices: 2716945--2716998 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 20
2716935 GACCGGTTTC
2716945 GACCGGTTC-GAACCGATTT
1 GACCGGTTCTGAACCGATTT
*
2716964 GACCGG-TCTGAACCGGTTT
1 GACCGGTTCTGAACCGATTT
*
2716983 GACCGG-TCTGACCCGA
1 GACCGGTTCTGAACCGA
2716999 CCCGACTGAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
18 2 0.06
19 29 0.94
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.22
Consensus pattern (20 bp):
GACCGGTTCTGAACCGATTT
Found at i:2717007 original size:14 final size:14
Alignment explanation
Indices: 2716990--2717030 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
2716980 TTTGACCGGT
2716990 CTGACCCGACCCGA
1 CTGACCCGACCCGA
2717004 CTGACCCGA-CCG-
1 CTGACCCGACCCGA
*
2717016 TTGACCCGACCCGA
1 CTGACCCGACCCGA
2717030 C
1 C
2717031 CGTTGACCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 8 0.35
13 6 0.26
14 9 0.39
ACGTcount: A:0.20, C:0.49, G:0.22, T:0.10
Consensus pattern (14 bp):
CTGACCCGACCCGA
Found at i:2717028 original size:17 final size:17
Alignment explanation
Indices: 2717006--2717038 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
2716996 CGACCCGACT
2717006 GACCCGACCGTTGACCC
1 GACCCGACCGTTGACCC
2717023 GACCCGACCGTTGACC
1 GACCCGACCGTTGACC
2717039 GTTGATCGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.45, G:0.24, T:0.12
Consensus pattern (17 bp):
GACCCGACCGTTGACCC
Found at i:2717038 original size:7 final size:7
Alignment explanation
Indices: 2717028--2717064 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
2717018 GACCCGACCC
2717028 GACCGTT
1 GACCGTT
2717035 GACCGTT
1 GACCGTT
*
2717042 GATCG-T
1 GACCGTT
2717048 GACCGTT
1 GACCGTT
2717055 GACCGTT
1 GACCGTT
2717062 GAC
1 GAC
2717065 TTCCTTTGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
6 5 0.19
7 22 0.81
ACGTcount: A:0.16, C:0.27, G:0.30, T:0.27
Consensus pattern (7 bp):
GACCGTT
Found at i:2724119 original size:17 final size:17
Alignment explanation
Indices: 2724097--2724135 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
2724087 CCAACCCGAC
2724097 TGACCCGACCCGACCGT
1 TGACCCGACCCGACCGT
2724114 TGACCCGACCCGACCGT
1 TGACCCGACCCGACCGT
2724131 TGACC
1 TGACC
2724136 GTTAACTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.18, C:0.46, G:0.23, T:0.13
Consensus pattern (17 bp):
TGACCCGACCCGACCGT
Found at i:2728969 original size:134 final size:137
Alignment explanation
Indices: 2728722--2728998 Score: 497
Period size: 134 Copynumber: 2.0 Consensus size: 137
2728712 ACTTCCTAGT
2728722 GTGCATCCCTTGCCCTTAGATTTTGTCAACCAAATGAATAAGTTAAGAATACTTGACAAATCAAT
1 GTGCATCCCTTGCCCTTAGATTTTGT--ACCAAATGAATAAG-T-AGAATACTTGACAAATCAAT
2728787 TTATCCGAGATAGTATTAAATGGTTTATTTCCCTCCTTTTAAACATTTGCTAATCTTAAACCGGT
62 TTATCCGAGATAGTATTAAATGGTTTATTTCCCTCCTTTTAAACATTTGCTAATCTTAAACCGGT
2728852 CTTGTAATTTA
127 CTTGTAATTTA
2728863 GTGCATCCCTTGCCCTTAGATTTTGT-CCAAATGAATAA-T-GAATACTTGACAAATCAATTTAT
1 GTGCATCCCTTGCCCTTAGATTTTGTACCAAATGAATAAGTAGAATACTTGACAAATCAATTTAT
2728925 CCGAGATAGTATTAAATGGTTTATTTCCCTCCTTTTAAACATTTGCTAATCTTAAACCGGTCTTG
66 CCGAGATAGTATTAAATGGTTTATTTCCCTCCTTTTAAACATTTGCTAATCTTAAACCGGTCTTG
2728990 TAATTTA
131 TAATTTA
2728997 GT
1 GT
2728999 TTGTCCGTAA
Statistics
Matches: 136, Mismatches: 0, Indels: 7
0.95 0.00 0.05
Matches are distributed among these distances:
134 97 0.71
136 1 0.01
138 12 0.09
141 26 0.19
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.38
Consensus pattern (137 bp):
GTGCATCCCTTGCCCTTAGATTTTGTACCAAATGAATAAGTAGAATACTTGACAAATCAATTTAT
CCGAGATAGTATTAAATGGTTTATTTCCCTCCTTTTAAACATTTGCTAATCTTAAACCGGTCTTG
TAATTTA
Found at i:2736278 original size:121 final size:118
Alignment explanation
Indices: 2736133--2736372 Score: 380
Period size: 121 Copynumber: 2.0 Consensus size: 118
2736123 ATTTCCATTA
2736133 CTCTAATTCTAAAATATCTCTTCCTGCTTCCAAGTCTACCACTTCAATC-ATAGATTCTTTCCTC
1 CTCTAATTCTAAAATATCTCTTCCTGCTTCCAAGTCTACCACTTC-ATCAATAGATTCTTTCC-C
2736197 GATGTTGCTATCAGAA-TGACACCTCCT-CA-CCCAATTCTTGAAGAGCATTTTCTCCC
64 GATGTTGC--T-AGAATTGACACCTCCTACATCCCAATTCTTGAAGAGCA-TTTCTCCC
2736253 CTCTAATTCTAAAAATATCTCTTCCTGCTTCCAAGTCTACCACTTCATCAATAGATTCTTTCCCG
1 CTCTAATTCT-AAAATATCTCTTCCTGCTTCCAAGTCTACCACTTCATCAATAGATTCTTTCCCG
2736318 ATGTTGCTAGAATTGACACCTCCTCACATCCCAATTCTTGAAGAGCATTTCTCCC
65 ATGTTGCTAGAATTGACACCTCCT-ACATCCCAATTCTTGAAGAGCATTTCTCCC
2736373 AGTGCAAGGC
Statistics
Matches: 114, Mismatches: 0, Indels: 12
0.90 0.00 0.10
Matches are distributed among these distances:
117 4 0.04
118 12 0.11
120 32 0.28
121 66 0.58
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (118 bp):
CTCTAATTCTAAAATATCTCTTCCTGCTTCCAAGTCTACCACTTCATCAATAGATTCTTTCCCGA
TGTTGCTAGAATTGACACCTCCTACATCCCAATTCTTGAAGAGCATTTCTCCC
Found at i:2737240 original size:110 final size:107
Alignment explanation
Indices: 2737027--2737246 Score: 404
Period size: 110 Copynumber: 2.0 Consensus size: 107
2737017 TCTCAACCCA
2737027 CTCCAATGGAACTAGGTGGAATGTTTTGCACAAACAAAGATATTGTGGTATTAAATTATCATTCG
1 CTCCAATGGAACTAGGTGGAATGTTTTGCACAAACAAAGATATTGTGGTATTAAATTATCATTCG
*
2737092 GAGTCAGTTTTGATCGCCGTTTGAACTTTTCCATTTCTGAAT
66 GAGTCAGTTTAGATCGCCGTTTGAACTTTTCCATTTCTGAAT
2737134 CTCCAATGGAACCTAGGTGGAATGTTTTGCACAAACAAAGATATTGTGGTATTCAAATTATCATC
1 CTCCAATGGAA-CTAGGTGGAATGTTTTGCACAAACAAAGATATTGTGGTATT-AAATTATCAT-
2737199 TCGGAGTCAGTTTAGATCGCCGTTTGAACTTTTCCATTTCTGAAT
63 TCGGAGTCAGTTTAGATCGCCGTTTGAACTTTTCCATTTCTGAAT
2737244 CTC
1 CTC
2737247 ACCTTGGCAA
Statistics
Matches: 109, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
107 11 0.10
108 41 0.38
109 10 0.09
110 47 0.43
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (107 bp):
CTCCAATGGAACTAGGTGGAATGTTTTGCACAAACAAAGATATTGTGGTATTAAATTATCATTCG
GAGTCAGTTTAGATCGCCGTTTGAACTTTTCCATTTCTGAAT
Found at i:2737888 original size:15 final size:15
Alignment explanation
Indices: 2737871--2737905 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
2737861 TACCATATTA
2737871 AAAATT-TATATTTT
1 AAAATTATATATTTT
2737885 AAAATTATATATTTTT
1 AAAATTATATA-TTTT
2737901 AAAAT
1 AAAAT
2737906 GAAATTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.32
15 4 0.21
16 9 0.47
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
AAAATTATATATTTT
Found at i:2743292 original size:3 final size:3
Alignment explanation
Indices: 2743286--2743356 Score: 72
Period size: 3 Copynumber: 23.7 Consensus size: 3
2743276 ATTTTTTTAA
* * *
2743286 TAT TAT T-T ATAT TAT TAT TAT TAT TAT AAA TAT TAT TAT TAA TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
2743331 TCT TTT TAT TAA TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
2743357 CAAACAGGCC
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
2 1 0.02
3 53 0.96
4 1 0.02
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:2743306 original size:15 final size:15
Alignment explanation
Indices: 2743282--2743356 Score: 86
Period size: 15 Copynumber: 5.2 Consensus size: 15
2743272 CTTTATTTTT
2743282 TTAATATTATT-TATA
1 TTAATATTATTAT-TA
*
2743297 TTATTATTATTATTA
1 TTAATATTATTATTA
2743312 -TAA-A-TATTATTA
1 TTAATATTATTATTA
* *
2743324 TTAATATTCTTTTTA
1 TTAATATTATTATTA
2743339 TTAATATTATTATTA
1 TTAATATTATTATTA
2743354 TTA
1 TTA
2743357 CAAACAGGCC
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
12 8 0.16
13 4 0.08
14 3 0.06
15 34 0.68
16 1 0.02
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.61
Consensus pattern (15 bp):
TTAATATTATTATTA
Found at i:2744958 original size:17 final size:17
Alignment explanation
Indices: 2744926--2744960 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
2744916 ATTATAAAAA
**
2744926 AAATTATTATTTTATTT
1 AAATTATTATAATATTT
2744943 AAATTATTATAATATTT
1 AAATTATTATAATATTT
2744960 A
1 A
2744961 TTAATATCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
AAATTATTATAATATTT
Found at i:2756525 original size:19 final size:17
Alignment explanation
Indices: 2756483--2756531 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 17
2756473 TATTTTCTCT
2756483 AAATTCAATTTA-TTTG
1 AAATTCAATTTATTTTG
*
2756499 AGATTCAATTTATTTTCG
1 AAATTCAATTTATTTT-G
2756517 AAAATTCAATTTATT
1 -AAATTCAATTTATT
2756532 CTTTTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 11 0.39
17 3 0.11
18 1 0.04
19 13 0.46
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (17 bp):
AAATTCAATTTATTTTG
Found at i:2757031 original size:115 final size:114
Alignment explanation
Indices: 2756826--2757050 Score: 342
Period size: 115 Copynumber: 2.0 Consensus size: 114
2756816 GTACTACGTT
* *
2756826 CTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTTTTCTTTGAGTTATCTGATCTG
1 CTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGATATCTGATCTG
* * * * * *
2756891 ATTTGGTATGAACCCCAGAATCAATCATTGGATTTGAAAGATGAATTTG
66 ATTCGGTAGGAACCACAGAACCAATCATTGGAATTAAAAGATGAATTTG
* *
2756940 CTCATAGTAGAAATAAGGAGACCCAATAGCCCTCTTCTGGAAGTGTTCTTTGAGATATCTGATCT
1 CTCATAGTAGAAATAAGAAGACCCAATAG-CATCTTCTGGAAGTGTTCTTTGAGATATCTGATCT
*
2757005 GGTTCGGTAGGAACCACAGAACCAATCATTGGAATTAAAAGATGAA
65 GATTCGGTAGGAACCACAGAACCAATCATTGGAATTAAAAGATGAA
2757051 CTGCATGATC
Statistics
Matches: 99, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
114 28 0.28
115 71 0.72
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30
Consensus pattern (114 bp):
CTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGATATCTGATCTG
ATTCGGTAGGAACCACAGAACCAATCATTGGAATTAAAAGATGAATTTG
Found at i:2757927 original size:113 final size:113
Alignment explanation
Indices: 2757798--2758526 Score: 824
Period size: 113 Copynumber: 6.4 Consensus size: 113
2757788 AGTTCATAAT
* *
2757798 AAGAAGGAAGAAGAAGTTCATAATGATAAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTG
1 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTAAATCCATCACTTG
* * *
2757863 ATGGATCAGCTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTG
66 ATGGATCAACATTGCCAG-GTAAAGTTCATAATGAGAAGAACTCATCTG
* * * *
2757911 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTG
1 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTAAATCCATCACTTG
*
2757976 ATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTG
66 ATGGATCAACATTGCCAGGTAAAGTTCATAATGAGAAGAA--C-TCATCTG
* *
2758027 AAGAA-GAAG-A-AA-TTCATAATGAGAAGAATTTGTTCAACCTTTTACTCAAATCCATCACTTG
1 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTAAATCCATCACTTG
* * *
2758088 ATGGATCAGCTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTG
66 ATGGATCAACATTGCCAG-GTAAAGTTCATAATGAGAAGAACTCATCTG
* * * *
2758136 AAGAAGGAA-ATAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTT
1 AAGAAGGAAGA-AGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTAAATCCATCACTT
*
2758200 GATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTG
65 GATGGATCAACATTGCCAGGTAAAGTTCATAATGAGAAGAA--C-TCATCTG
* * * *
2758252 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTG
1 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTAAATCCATCACTTG
*
2758317 ATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCATCT-
66 ATGGATCAACATTGCCAGGTAAAGTTCATAATGAGAAGAACTCATCTG
* ** * * *
2758364 --GAA-GAAGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACCTTTTGCATAATTCTATCACAGA
1 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTAAATCCATCAC---
* * * * *
2758426 AGGAGATAGATTAGCATCAGCTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCT-
63 ------TTGA-T-GGATCAACATTGCCAG-GTAAAGTTCATAATGAGAAGAACTCATCTG
*
2758484 --GAA-GAAGAAGAAGTTCATAATGAGAAGAGTTTGTTCAACCTTT
1 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTT
2758527 CTAATGACTC
Statistics
Matches: 541, Mismatches: 48, Indels: 47
0.85 0.08 0.07
Matches are distributed among these distances:
109 58 0.11
110 7 0.01
111 1 0.00
112 81 0.15
113 179 0.33
114 2 0.00
115 6 0.01
116 122 0.23
117 1 0.00
118 3 0.01
119 1 0.00
120 79 0.15
121 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (113 bp):
AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTAAATCCATCACTTG
ATGGATCAACATTGCCAGGTAAAGTTCATAATGAGAAGAACTCATCTG
Found at i:2758195 original size:225 final size:224
Alignment explanation
Indices: 2757804--2758408 Score: 984
Period size: 225 Copynumber: 2.7 Consensus size: 224
2757794 TAATAAGAAG
* *
2757804 GAAGAAGAAGTTCATAATGATAAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGAT
1 GAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGAT
2757869 CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAA
66 CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA-AAGAAGTTCATAA
2757934 TGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGA
130 TGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGA
2757999 GTTCATAATGAGAAGAACTCGTCATCTGAA
195 GTTCATAATGAGAAGAACTCGTCATCTGAA
*
2758029 GAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTACTCAAATCCATCACTTGATGGAT
1 GAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGAT
2758094 CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAATAGAAGTTCATAA
66 CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAA-AGAAGTTCATAA
2758159 TGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGA
130 TGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGA
2758224 GTTCATAATGAGAAGAACTCGTCATCTGAA
195 GTTCATAATGAGAAGAACTCGTCATCTGAA
* ** * *
2758254 GAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGAT
1 GAA-GAAG-A-AA-TTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGAT
* * * *
2758319 GGATCAACATTGCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTGAAGAA-G--AAGAAGTTC
62 GGATCAGCTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAAAGAAGTTC
* **
2758380 ACAATGAGAAGAGCTTGTTCAACCTTTTG
126 ATAATGAGAAGAATTTGTTCAACCTTTTG
2758409 CATAATTCTA
Statistics
Matches: 358, Mismatches: 16, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
224 1 0.00
225 257 0.72
226 5 0.01
227 1 0.00
228 4 0.01
229 90 0.25
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (224 bp):
GAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGAT
CAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAAAGAAGTTCATAAT
GAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGAG
TTCATAATGAGAAGAACTCGTCATCTGAA
Found at i:2758333 original size:116 final size:113
Alignment explanation
Indices: 2757798--2758408 Score: 857
Period size: 113 Copynumber: 5.4 Consensus size: 113
2757788 AGTTCATAAT
* * ** * *
2757798 AAGAAGGAAGAAGAAGTTCATAATGATAAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTG
1 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTG
* * * *
2757863 ATGGATCAGCTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTG
66 ATGGATCAACATTGCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTG
2757911 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTG
1 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTG
2757976 ATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTG
66 ATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAA--C-TCATCTG
** ** * *
2758027 AAGAA-GAAG-A-AA-TTCATAATGAGAAGAATTTGTTCAACCTTTTACTCAAATCCATCACTTG
1 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTG
* * * *
2758088 ATGGATCAGCTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTG
66 ATGGATCAACATTGCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTG
2758136 AAGAAGGAA-ATAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTT
1 AAGAAGGAAGA-AGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTT
2758200 GATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCATCTG
65 GATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAA--C-TCATCTG
2758252 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTG
1 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTG
2758317 ATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCATCT-
66 ATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCATCTG
* **
2758364 --GAA-GAAGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACCTTTTG
1 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
2758409 CATAATTCTA
Statistics
Matches: 450, Mismatches: 33, Indels: 34
0.87 0.06 0.07
Matches are distributed among these distances:
109 51 0.11
110 7 0.02
111 1 0.00
112 81 0.18
113 179 0.40
114 2 0.00
115 6 0.01
116 122 0.27
117 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (113 bp):
AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTG
ATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCATCTG
Found at i:2758494 original size:120 final size:118
Alignment explanation
Indices: 2758339--2758607 Score: 362
Period size: 120 Copynumber: 2.3 Consensus size: 118
2758329 TGCCAGGTAG
2758339 AGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACC
* * * * * **
2758404 TTT-TGCATAATTCTATCACAGAAGGAGATAGATTAGCATCAGCTTTTCCAG-AGAA
66 TTTCT-AATAACTCTATCACAGAAGGAAATAGATCAACATCA---TCCCCAGCAGAA
* *
2758459 AGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCATAATGAGAAGAGTTTGTTCAACC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACC
* * * *
2758524 TTTCTAATGACTCTATCACATAAGGAAATAGGTCAACATCATCCCCAGCGGAA
66 TTTCTAATAACTCTATCACAGAAGGAAATAGATCAACATCATCCCCAGCAGAA
*
2758577 AGTTCATAATGAGAAGAACTCATATGAAGAA
1 AGTTCATAATGAGAAGAACTCATCTGAAGAA
2758608 AGAGAAGAAT
Statistics
Matches: 133, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
117 5 0.04
118 33 0.25
120 94 0.71
121 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (118 bp):
AGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACC
TTTCTAATAACTCTATCACAGAAGGAAATAGATCAACATCATCCCCAGCAGAA
Found at i:2758704 original size:15 final size:15
Alignment explanation
Indices: 2758684--2758715 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
2758674 TCTTTTCGTC
2758684 TTTGCTCTATTCTTG
1 TTTGCTCTATTCTTG
2758699 TTTGCTCTATTCTTG
1 TTTGCTCTATTCTTG
2758714 TT
1 TT
2758716 AACACAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.19, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTGCTCTATTCTTG
Found at i:2758784 original size:3 final size:3
Alignment explanation
Indices: 2758778--2758848 Score: 72
Period size: 3 Copynumber: 23.7 Consensus size: 3
2758768 TTTTTTTTAA
* * *
2758778 TAT TAT T-T ATAT TAT TAT TAT TAT TAT AAA TAT TAT TAT TAA TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
2758823 TCT TTT TAT TAA TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
2758849 CAAACAGGCC
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
2 1 0.02
3 53 0.96
4 1 0.02
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:2758785 original size:15 final size:15
Alignment explanation
Indices: 2758767--2758848 Score: 80
Period size: 15 Copynumber: 5.7 Consensus size: 15
2758757 TTTTTTCTTC
*
2758767 ATTTTTTTTAATATT
1 ATTTTTATTAATATT
* *
2758782 ATTTATATTATTATT
1 ATTTTTATTAATATT
*
2758797 ATTATTA-TAA-A-T
1 ATTTTTATTAATATT
*
2758809 ATTATTATTAATATT
1 ATTTTTATTAATATT
*
2758824 CTTTTTATTAATATT
1 ATTTTTATTAATATT
*
2758839 ATTATTATTA
1 ATTTTTATTA
2758849 CAAACAGGCC
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
12 8 0.15
13 4 0.07
14 3 0.06
15 39 0.72
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTTTTATTAATATT
Found at i:2760432 original size:17 final size:17
Alignment explanation
Indices: 2760400--2760434 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
2760390 TATTATAAAA
**
2760400 AAATTATTATTTTATTT
1 AAATTATTATAATATTT
2760417 AAATTATTATAATATTT
1 AAATTATTATAATATTT
2760434 A
1 A
2760435 TTAATATCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
AAATTATTATAATATTT
Found at i:2768114 original size:31 final size:31
Alignment explanation
Indices: 2768074--2768160 Score: 104
Period size: 31 Copynumber: 2.8 Consensus size: 31
2768064 TTCATCCTTT
*
2768074 AATTTTAGATAAATTATTAATTTAACT-TTA
1 AATTTTAGATAAAATATTAATTTAACTATTA
** *
2768104 AATTTTTAGATAAAATATTAATAAAATTATTA
1 AA-TTTTAGATAAAATATTAATTTAACTATTA
* *
2768136 AATTTTAAATAAAATATAAATTTAA
1 AATTTTAGATAAAATATTAATTTAA
2768161 TCATTCAATT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
30 2 0.04
31 40 0.85
32 5 0.11
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (31 bp):
AATTTTAGATAAAATATTAATTTAACTATTA
Found at i:2769477 original size:93 final size:93
Alignment explanation
Indices: 2769346--2769610 Score: 377
Period size: 93 Copynumber: 2.8 Consensus size: 93
2769336 AATGCCTTCA
* * * * *
2769346 GAATTGTTATTAATCATGGCATATTGATCAAATAACTGCTGTCTAATTTCATAGTTCAAACTGGG
1 GAATTGTTATTAAGCATCGCATCTTGATCAACTGACTGCTGTCTAATTTCATAGTTCAAACTGGG
*
2769411 AGACATTTGTGGAGCGTAAGAACCATCG
66 AGACATTTGAGGAGCGTAAGAACCATCG
* * *
2769439 GAATTGTTCTTAAGCATCACATCTTGATCAACTGACTGCTGCCTAATTTCATAGTTCAAACTGGG
1 GAATTGTTATTAAGCATCGCATCTTGATCAACTGACTGCTGTCTAATTTCATAGTTCAAACTGGG
* *
2769504 AGACATTTCAGGAGTGTAAGAACCATCG
66 AGACATTTGAGGAGCGTAAGAACCATCG
* * * *
2769532 GAATTGTTATTAAGCTTCGCATCTTGATCAACTGACTGCTTTCCAATTTCATAGCTCAAACTGGG
1 GAATTGTTATTAAGCATCGCATCTTGATCAACTGACTGCTGTCTAATTTCATAGTTCAAACTGGG
* *
2769597 GGACATTTGCGGAG
66 AGACATTTGAGGAG
2769611 TGCAAGTACC
Statistics
Matches: 151, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 151 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (93 bp):
GAATTGTTATTAAGCATCGCATCTTGATCAACTGACTGCTGTCTAATTTCATAGTTCAAACTGGG
AGACATTTGAGGAGCGTAAGAACCATCG
Found at i:2773367 original size:14 final size:14
Alignment explanation
Indices: 2773348--2773383 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
2773338 AATCCTTTCG
*
2773348 TTTATGTTCGTTCA
1 TTTATGTTCATTCA
*
2773362 TTTATGTTCATTTA
1 TTTATGTTCATTCA
2773376 TTTATGTT
1 TTTATGTT
2773384 TGTGTATGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.08, G:0.11, T:0.64
Consensus pattern (14 bp):
TTTATGTTCATTCA
Found at i:2773415 original size:24 final size:24
Alignment explanation
Indices: 2773348--2773438 Score: 112
Period size: 24 Copynumber: 3.8 Consensus size: 24
2773338 AATCCTTTCG
*
2773348 TTTATGTTCGTTCATTTATGTTCA
1 TTTATGTTCGTTCGTTTATGTTCA
* * *
2773372 TTTAT-TTATGTTTGTGTATGTTCA
1 TTTATGTT-CGTTCGTTTATGTTCA
*
2773396 TTTATGTTCGTTCGTTTATGTCCA
1 TTTATGTTCGTTCGTTTATGTTCA
*
2773420 TGTATGTTCGTTCGTTTAT
1 TTTATGTTCGTTCGTTTAT
2773439 ATTCGACCTA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
23 2 0.04
24 52 0.93
25 2 0.04
ACGTcount: A:0.14, C:0.11, G:0.16, T:0.58
Consensus pattern (24 bp):
TTTATGTTCGTTCGTTTATGTTCA
Found at i:2773424 original size:34 final size:34
Alignment explanation
Indices: 2773357--2773428 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
2773347 GTTTATGTTC
* ***
2773357 GTTCATTTATGTTCATTTATTTATGTTTGTGTAT
1 GTTCATTTATGTTCATTCATTTATGTCCATGTAT
* *
2773391 GTTCATTTATGTTCGTTCGTTTATGTCCATGTAT
1 GTTCATTTATGTTCATTCATTTATGTCCATGTAT
2773425 GTTC
1 GTTC
2773429 GTTCGTTTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.15, C:0.11, G:0.17, T:0.57
Consensus pattern (34 bp):
GTTCATTTATGTTCATTCATTTATGTCCATGTAT
Found at i:2775382 original size:19 final size:19
Alignment explanation
Indices: 2775355--2775463 Score: 71
Period size: 19 Copynumber: 5.7 Consensus size: 19
2775345 TTAACATTTT
* *
2775355 AGAATTTATTTTCTGAATC
1 AGAACTTATTTTCAGAATC
* *
2775374 AGAACTTATTTCCAGATTC
1 AGAACTTATTTTCAGAATC
*
2775393 ATAACTTATTTTCA-AACTC
1 AGAACTTATTTTCAGAA-TC
* * *
2775412 ATAACTTACTGTCA-AATTC
1 AGAACTTATTTTCAGAA-TC
*
2775431 ATAACTTATTTTCA-AATTC
1 AGAACTTATTTTCAGAA-TC
* *
2775450 ATAGCTTATTTTCA
1 AGAACTTATTTTCA
2775464 AATTCATAGT
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
18 1 0.01
19 75 0.99
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (19 bp):
AGAACTTATTTTCAGAATC
Found at i:2775472 original size:19 final size:19
Alignment explanation
Indices: 2775376--2775471 Score: 138
Period size: 19 Copynumber: 5.1 Consensus size: 19
2775366 TCTGAATCAG
* *
2775376 AACTTATTTCCAGATTCAT
1 AACTTATTTTCAAATTCAT
*
2775395 AACTTATTTTCAAACTCAT
1 AACTTATTTTCAAATTCAT
* *
2775414 AACTTACTGTCAAATTCAT
1 AACTTATTTTCAAATTCAT
2775433 AACTTATTTTCAAATTCAT
1 AACTTATTTTCAAATTCAT
*
2775452 AGCTTATTTTCAAATTCAT
1 AACTTATTTTCAAATTCAT
2775471 A
1 A
2775472 GTCCAATGCA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 68 1.00
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.43
Consensus pattern (19 bp):
AACTTATTTTCAAATTCAT
Found at i:2777346 original size:14 final size:14
Alignment explanation
Indices: 2777327--2777354 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
2777317 TTGACTTTTG
2777327 CTTTTCGTTTTCTA
1 CTTTTCGTTTTCTA
2777341 CTTTTCGTTTTCTA
1 CTTTTCGTTTTCTA
2777355 AATGCATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.21, G:0.07, T:0.64
Consensus pattern (14 bp):
CTTTTCGTTTTCTA
Found at i:2780343 original size:36 final size:36
Alignment explanation
Indices: 2780295--2780365 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
2780285 TTACCTTCTG
* *
2780295 TTTCAGATGCAACAGGATTCGAATCTAGTTCTTGGT
1 TTTCAGAGGCAACAGGATCCGAATCTAGTTCTTGGT
* *
2780331 TTTCAGAGGCAACTGGATCCGAATCTGGTTCTTGG
1 TTTCAGAGGCAACAGGATCCGAATCTAGTTCTTGG
2780366 CGAATGCTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (36 bp):
TTTCAGAGGCAACAGGATCCGAATCTAGTTCTTGGT
Found at i:2782477 original size:19 final size:19
Alignment explanation
Indices: 2782434--2782511 Score: 77
Period size: 23 Copynumber: 3.9 Consensus size: 19
2782424 CTGATACCAT
*
2782434 GTAGAAAAACAGACTGTAGA
1 GTAG-AAAACAGACTGTATA
*
2782454 -AAGAAAACAGACTGTATA
1 GTAGAAAACAGACTGTATA
2782472 GTAGAAAGAAAACAGACTGTATA
1 GT----AGAAAACAGACTGTATA
*
2782495 GTAGAAAACAAACTGTA
1 GTAGAAAACAGACTGTA
2782512 GGAAACAAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
18 14 0.29
19 16 0.33
23 19 0.39
ACGTcount: A:0.53, C:0.10, G:0.21, T:0.17
Consensus pattern (19 bp):
GTAGAAAACAGACTGTATA
Found at i:2782507 original size:23 final size:23
Alignment explanation
Indices: 2782449--2782501 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
2782439 AAAACAGACT
2782449 GTAGAAAGAAAACAGACTGTATA
1 GTAGAAAGAAAACAGACTGTATA
2782472 GTAGAAAGAAAACAGACTGTATA
1 GTAGAAAGAAAACAGACTGTATA
2782495 GTAGAAA
1 GTAGAAA
2782502 ACAAACTGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.53, C:0.08, G:0.23, T:0.17
Consensus pattern (23 bp):
GTAGAAAGAAAACAGACTGTATA
Found at i:2790503 original size:3 final size:3
Alignment explanation
Indices: 2790495--2790596 Score: 100
Period size: 3 Copynumber: 34.0 Consensus size: 3
2790485 AATTACTTTT
2790495 TAA TAA TAA TAA TAA T-A TATA TAA TAA T-A TATA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA-A TAA TAA TAA TAA
* * * * * * * *
2790540 TTA TTA TAA TAA TAA TAA TAA TAA TTA TTA TTA TTA TTA TTA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
2790588 TAA TAA TAA
1 TAA TAA TAA
2790597 ATAAATAAAT
Statistics
Matches: 91, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
2 4 0.04
3 81 0.89
4 6 0.07
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (3 bp):
TAA
Found at i:2790533 original size:30 final size:28
Alignment explanation
Indices: 2790497--2790594 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
2790487 TTACTTTTTA
2790497 ATAATAATAATAATATATATAATAATATAT
1 ATAATAATAATAAT-TAT-TAATAATATAT
2790527 ATAATAATAATAATTATT-ATAATA-AT
1 ATAATAATAATAATTATTAATAATATAT
* * *
2790553 AATAATAATAATTATTATTATTATTAT-T
1 -ATAATAATAATAATTATTAATAATATAT
2790581 ATAATAATAATAAT
1 ATAATAATAATAAT
2790595 AAATAAATAA
Statistics
Matches: 61, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
26 2 0.03
27 36 0.59
28 6 0.10
29 3 0.05
30 14 0.23
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (28 bp):
ATAATAATAATAATTATTAATAATATAT
Found at i:2790876 original size:17 final size:17
Alignment explanation
Indices: 2790854--2790912 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
2790844 TTGAACAAAC
2790854 TCTTCTCATTGTGAACT
1 TCTTCTCATTGTGAACT
*
2790871 TCTTCTTC-TTCAGATG-AGT
1 TCTTC-TCATT--G-TGAACT
2790890 TCTTCTCATTGTGAACT
1 TCTTCTCATTGTGAACT
2790907 TCTTCT
1 TCTTCT
2790913 GGAAATGCTG
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
16 2 0.06
17 16 0.47
18 4 0.12
19 10 0.29
20 2 0.06
ACGTcount: A:0.15, C:0.24, G:0.12, T:0.49
Consensus pattern (17 bp):
TCTTCTCATTGTGAACT
Found at i:2790999 original size:120 final size:121
Alignment explanation
Indices: 2790813--2791041 Score: 315
Period size: 124 Copynumber: 1.9 Consensus size: 121
2790803 GATGACAATT
* * *
2790813 TATCTCCTTCTGTGATGTAATCTAGCAAATGTTGAACAAACTCTTCTCATTGTGAA-CTTCTTC-
1 TATCTCCTTCTGTGATGTAATCTAGCAAAGGTCGAACAAACTCTTCTCATTATGAATCTTCTTCT
*
2790876 TTCTTCAGATGAGTTCTTCTCATTGTGAACT-TCTTCTGGAAATGCTGATGATGATA
66 TTCTTCAGATGAGTTCTTCTCATTATGAACTCTC-TCTGGAAATGCTGATGATGATA
* *
2790932 TATCTCCTTCTGTGATAG-AGTC-ATGCAAAAGGTCGAACAAGCTCTTCTCATTATGAACTTCTT
1 TATCTCCTTCTGTGAT-GTAATCTA-GC-AAAGGTCGAACAAACTCTTCTCATTATGAA--TCTT
2790995 CTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGAAA
61 CTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGAAA
2791042 AGTTGATCCA
Statistics
Matches: 96, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
118 1 0.01
119 21 0.22
120 27 0.28
123 7 0.07
124 38 0.40
125 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.39
Consensus pattern (121 bp):
TATCTCCTTCTGTGATGTAATCTAGCAAAGGTCGAACAAACTCTTCTCATTATGAATCTTCTTCT
TTCTTCAGATGAGTTCTTCTCATTATGAACTCTCTCTGGAAATGCTGATGATGATA
Found at i:2791101 original size:113 final size:113
Alignment explanation
Indices: 2790956--2791629 Score: 1017
Period size: 113 Copynumber: 5.9 Consensus size: 113
2790946 ATAGAGTCAT
* ** *
2790956 GCAAAAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * * *
2791021 ATTATGAACTCTCTCTGGAAAAGTTGATCCATCGAGTGATGAATTCAA
66 ATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGAATTCAA
* *
2791069 GTGAAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 G-CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* ** * *
2791133 CATTATGAACTCTTTCACTGGGGATGCTGATCCATCAAATGATGAAATCAA
65 CATTATGAACT-TTT-TCTGGAAAAGCTGATCCATCAAATGATGAATTCAA
* *
2791184 ACAAAAGGTTTAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * *
2791249 ATTATGAACTTTTTCTGGAAAAGTTGATCTATCAAGTGATGAATTCAA
66 ATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGAATTCAA
* *
2791297 ACAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* **
2791362 ATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
66 ATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGAATTCAA
*
2791410 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* **
2791475 ATTATGAACTTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGA
66 ATTATGAAC-TTTTTCTGGAAAAGCTGATCCATCAAATGATGAATTCAA
*
2791524 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
*
2791589 ATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAGTGATG
66 ATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATG
2791630 GATTTGAATC
Statistics
Matches: 520, Mismatches: 36, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
113 302 0.58
114 125 0.24
115 93 0.18
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (113 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGAATTCAA
Found at i:2791234 original size:228 final size:226
Alignment explanation
Indices: 2790957--2791629 Score: 1042
Period size: 228 Copynumber: 3.0 Consensus size: 226
2790947 TAGAGTCATG
* ** *
2790957 CAAAAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * * *
2791022 TTATGAACTCTCTCTGGAAAAGTTGATCCATCGAGTGATGAATTCAAGTGAAAA-GTTGAACAAG
66 TTATGAACTTTTTCTGGAAAAGTTGATCCATCAAGTGATGAATTCAAG-CAAAAGGTTGAACAAA
* *
2791086 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTTCAC
130 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT-TTT-TC
** *
2791151 TGGGGATGCTGATCCATCAAATGATGAAATCAAA
193 TGGAAAAGCTGATCCATCAAATGATGAAATCAAA
*
2791185 CAAAAGGTTTAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* *
2791250 TTATGAACTTTTTCTGGAAAAGTTGATCTATCAAGTGATGAATTCAAACAAAAGGTTGAACAAAT
66 TTATGAACTTTTTCTGGAAAAGTTGATCCATCAAGTGATGAATTCAAGCAAAAGGTTGAACAAAT
2791315 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
131 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
* * ** *
2791380 AAAAGCTGATCCATCAAATGATGGATTTGAG
196 AAAAGCTGATCCATCAAATGATGAAATCAAA
*
2791411 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * **
2791476 TTATGAACTTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAA
66 TTATGAAC-TTTTTCTGGAAAAGTTGATCCATCAAGTGATGAATTCAAGCAAAAGGTTGAACAAA
2791541 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTG
130 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTG
*
2791606 GAAAAGCTGATCCATCAAGTGATG
195 GAAAAGCTGATCCATCAAATGATG
2791630 GATTTGAATC
Statistics
Matches: 411, Mismatches: 32, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
226 98 0.24
227 144 0.35
228 169 0.41
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (226 bp):
CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTTTTTCTGGAAAAGTTGATCCATCAAGTGATGAATTCAAGCAAAAGGTTGAACAAAT
TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
AAAAGCTGATCCATCAAATGATGAAATCAAA
Found at i:2791423 original size:341 final size:340
Alignment explanation
Indices: 2790957--2791629 Score: 1051
Period size: 341 Copynumber: 2.0 Consensus size: 340
2790947 TAGAGTCATG
* *
2790957 CAAAAGGTCGAACAAGCTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTCGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * * *
2791022 TTATGAACTCTCTCTGGAAAAGTTGATCCATCGAGTGATGAATTCAAGTGAAAAGTTGAACAAGT
66 TTATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAGTCAAAAGTTGAACAAAT
2791087 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTTCACT
131 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT-TTTCACT
** * *
2791152 GGGGATGCTGATCCATCAAATGATGAAATCAAACAAAAGGTTTAACAAATTCTTCTCATTATGAA
195 GGAAAAGCTGATCCATCAAATGATGAAATCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAA
* *
2791217 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGTTGATCTATC
260 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATC
2791282 AAGTGATGAATTCAAA
325 AAGTGATGAATTCAAA
* * *
2791298 CAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTCGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * **
2791363 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAAATGATGGATTTGAG-CAAAAGGTTGAACAAA
66 TTATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAGTCAAAA-GTTGAACAAA
* **
2791427 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTTCT
130 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTCACT
* * ** *
2791492 GGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAA
195 GGAAAAGCTGATCCATCAAATGATGAAATCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAA
*
2791557 TTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATC
260 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATC
2791622 AAGTGATG
325 AAGTGATG
2791630 GATTTGAATC
Statistics
Matches: 301, Mismatches: 30, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
340 135 0.45
341 166 0.55
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (340 bp):
CAAAAGGTCGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAGTCAAAAGTTGAACAAAT
TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTCACTG
GAAAAGCTGATCCATCAAATGATGAAATCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAAC
TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCATCA
AGTGATGAATTCAAA
Found at i:2792500 original size:54 final size:53
Alignment explanation
Indices: 2792392--2792525 Score: 148
Period size: 54 Copynumber: 2.6 Consensus size: 53
2792382 TGAATAGCAG
* * * * * *
2792392 GTTCGTAAAACATTTGACAGCACATTCATCCTTTCCTTTGGCTTCTGCTCAGA
1 GTTCGTAAAACATTTGACAACACATTCATCATCTCATGTGGCTTCAGCTCAGA
* * *
2792445 TGTTCGTAAAACATTTGACAACACATTCTTCATCTCATGTGGTTTCAGCTTAGA
1 -GTTCGTAAAACATTTGACAACACATTCATCATCTCATGTGGCTTCAGCTCAGA
*
2792499 --T-GTAAAACACTTGACAACACATTCATC
1 GTTCGTAAAACATTTGACAACACATTCATC
2792526 CTTTTCTGTG
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
50 24 0.35
51 1 0.01
54 44 0.64
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.34
Consensus pattern (53 bp):
GTTCGTAAAACATTTGACAACACATTCATCATCTCATGTGGCTTCAGCTCAGA
Found at i:2792541 original size:40 final size:40
Alignment explanation
Indices: 2792497--2792576 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
2792487 TTTCAGCTTA
2792497 GATGTAAAACACTTGACAACACATTCATCCTTTTCTGTGG
1 GATGTAAAACACTTGACAACACATTCATCCTTTTCTGTGG
* *
2792537 GATGTAAAACTCTTGACAACATATTCATCCTTTTCTGTGG
1 GATGTAAAACACTTGACAACACATTCATCCTTTTCTGTGG
2792577 CTTCTGCTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (40 bp):
GATGTAAAACACTTGACAACACATTCATCCTTTTCTGTGG
Found at i:2796946 original size:16 final size:16
Alignment explanation
Indices: 2796920--2796970 Score: 59
Period size: 17 Copynumber: 3.2 Consensus size: 16
2796910 ATTCAATTTC
2796920 TCCCC-TTTTTCTTTT
1 TCCCCTTTTTTCTTTT
2796935 TCCCCTTTTTTCTTTTT
1 TCCCCTTTTTTC-TTTT
* * *
2796952 TCTCATTTTTCCTTTT
1 TCCCCTTTTTTCTTTT
2796968 TCC
1 TCC
2796971 TTTTTCATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 5 0.17
16 12 0.40
17 13 0.43
ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67
Consensus pattern (16 bp):
TCCCCTTTTTTCTTTT
Found at i:2796949 original size:7 final size:7
Alignment explanation
Indices: 2796925--2797023 Score: 67
Period size: 7 Copynumber: 13.3 Consensus size: 7
2796915 ATTTCTCCCC
2796925 TTTTTCT
1 TTTTTCT
*
2796932 TTTTCCCCT
1 TTTT--TCT
2796941 TTTTTCT
1 TTTTTCT
2796948 TTTTTCT
1 TTTTTCT
*
2796955 CATTTTTCC
1 --TTTTTCT
*
2796964 TTTTTCC
1 TTTTTCT
2796971 TTTTTCAT
1 TTTTTC-T
2796979 TTTTT-T
1 TTTTTCT
2796985 TCTTTTCT
1 T-TTTTCT
2796993 TTTCTT-T
1 TTT-TTCT
*
2797000 TTTTCCTT
1 TTTTTC-T
2797008 TTTTTCT
1 TTTTTCT
*
2797015 TCTTTCT
1 TTTTTCT
2797022 TT
1 TT
2797024 GCTGGATGAG
Statistics
Matches: 74, Mismatches: 8, Indels: 20
0.73 0.08 0.20
Matches are distributed among these distances:
6 3 0.04
7 44 0.59
8 15 0.20
9 12 0.16
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTCT
Found at i:2796952 original size:9 final size:9
Alignment explanation
Indices: 2796940--2797012 Score: 58
Period size: 9 Copynumber: 7.6 Consensus size: 9
2796930 CTTTTTCCCC
2796940 TTTTTTCTT
1 TTTTTTCTT
*
2796949 TTTTCTCATT
1 TTTTTTC-TT
2796959 TTTCCTTT-TT
1 TTT--TTTCTT
*
2796969 CCTTTTTCATT
1 -TTTTTTC-TT
2796980 TTTTTTCTT
1 TTTTTTCTT
2796989 TTCTTTTCTT
1 TT-TTTTCTT
*
2796999 TTTTTCCTT
1 TTTTTTCTT
2797008 TTTTT
1 TTTTT
2797013 CTTCTTTCTT
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
9 24 0.46
10 22 0.42
11 4 0.08
12 2 0.04
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:2799806 original size:6 final size:6
Alignment explanation
Indices: 2799797--2799837 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
2799787 AACGTAAAAA
* *
2799797 AAATGC AAATGT AAATGC AAAATGC AAATGC AAATGT AAAT
1 AAATGC AAATGC AAATGC -AAATGC AAATGC AAATGC AAAT
2799838 ATGTGAATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.54, C:0.10, G:0.15, T:0.22
Consensus pattern (6 bp):
AAATGC
Found at i:2799825 original size:13 final size:13
Alignment explanation
Indices: 2799797--2799830 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
2799787 AACGTAAAAA
*
2799797 AAATGC-AAATGT
1 AAATGCAAAATGC
2799809 AAATGCAAAATGC
1 AAATGCAAAATGC
2799822 AAATGCAAA
1 AAATGCAAA
2799831 TGTAAATATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.56, C:0.12, G:0.15, T:0.18
Consensus pattern (13 bp):
AAATGCAAAATGC
Found at i:2803520 original size:3 final size:3
Alignment explanation
Indices: 2803512--2803553 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
2803502 AATTATTTTT
* *
2803512 TAA TAA TAA TAA TAA TAA TAA TTA TTA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
2803554 ATAAATAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:2803564 original size:21 final size:22
Alignment explanation
Indices: 2803517--2803575 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
2803507 TTTTTTAATA
* *
2803517 ATAATAATAATAAT-AATTATT
1 ATAATAATAATAATAAATAAAT
2803538 ATAATAATAATAATAAATAAAT
1 ATAATAATAATAATAAATAAAT
2803560 A-AATAA-AATAAGTAAA
1 ATAATAATAATAA-TAAA
2803576 AAAAATTAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.15
21 23 0.68
22 6 0.18
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (22 bp):
ATAATAATAATAATAAATAAAT
Found at i:2805240 original size:3 final size:3
Alignment explanation
Indices: 2805234--2805260 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
2805224 AATAATAATA
2805234 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
2805261 TAAAAAGGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:2805580 original size:23 final size:23
Alignment explanation
Indices: 2805554--2805604 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
2805544 AATAACATAT
* **
2805554 TAGGTACCGCTTATATAATGTAA
1 TAGGTACCGATTATATAATAAAA
*
2805577 TAGGTAGCGATTATATAATAAAA
1 TAGGTACCGATTATATAATAAAA
2805600 TAGGT
1 TAGGT
2805605 TAATTACTGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (23 bp):
TAGGTACCGATTATATAATAAAA
Found at i:2805643 original size:87 final size:87
Alignment explanation
Indices: 2805522--2805784 Score: 409
Period size: 87 Copynumber: 3.0 Consensus size: 87
2805512 ATATCATTTA
* * *
2805522 ACTGGAAAATATTATCAAACACAATAACATATTAGGTACCGCTTATATAATGTAATAGGTAGCGA
1 ACTGG-AAACATTATCAAGCACAATAACATATTAGGTACCGCTTATATAATGTAATAGGTAGCGC
2805587 TTATATAATAAAATAGGTTAATT
65 TTATATAATAAAATAGGTTAATT
* *
2805610 ACTGGAAACATTATCAAGCACTATAACATATTAGATACCGCTTATATAATGTAATAGGTAGCGCT
1 ACTGGAAACATTATCAAGCACAATAACATATTAGGTACCGCTTATATAATGTAATAGGTAGCGCT
2805675 TATATAATAAAATAGGTTAATT
66 TATATAATAAAATAGGTTAATT
* * * * *
2805697 ACTGAAAACATTATCAAGCACAATAACATATTAGGTACCGCTTATATAACGCAATATGTAACGCT
1 ACTGGAAACATTATCAAGCACAATAACATATTAGGTACCGCTTATATAATGTAATAGGTAGCGCT
**
2805762 TATATAATAAAATATATTAATT
66 TATATAATAAAATAGGTTAATT
2805784 A
1 A
2805785 TTTAATTTGT
Statistics
Matches: 161, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
87 156 0.97
88 5 0.03
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.32
Consensus pattern (87 bp):
ACTGGAAACATTATCAAGCACAATAACATATTAGGTACCGCTTATATAATGTAATAGGTAGCGCT
TATATAATAAAATAGGTTAATT
Found at i:2805657 original size:23 final size:23
Alignment explanation
Indices: 2805631--2805681 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
2805621 TATCAAGCAC
*
2805631 TATAACATATTAGATACCGCTTA
1 TATAACATAATAGATACCGCTTA
** * *
2805654 TATAATGTAATAGGTAGCGCTTA
1 TATAACATAATAGATACCGCTTA
2805677 TATAA
1 TATAA
2805682 TAAAATAGGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (23 bp):
TATAACATAATAGATACCGCTTA
Found at i:2805682 original size:23 final size:23
Alignment explanation
Indices: 2805648--2805691 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
2805638 TATTAGATAC
**
2805648 CGCTTATATAATGTAATAGGTAG
1 CGCTTATATAATAAAATAGGTAG
2805671 CGCTTATATAATAAAATAGGT
1 CGCTTATATAATAAAATAGGT
2805692 TAATTACTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (23 bp):
CGCTTATATAATAAAATAGGTAG
Found at i:2806233 original size:114 final size:113
Alignment explanation
Indices: 2806025--2806241 Score: 326
Period size: 114 Copynumber: 1.9 Consensus size: 113
2806015 GTATCGTTAC
* * * *
2806025 TTTATAAAAATGTATTAATACTTTACAATATAACAGGTAAAACTATGACAAAATCAGTTTCATTA
1 TTTATAAAAATGTATCAATACTTTACAATAAAACAGGTAAAAATATGACAAAACCAGTTTCATTA
* *
2806090 TGACAAAACCGATAAAATTTACCGGATATGTTGAAAGTGTTAATCCTT
66 TGACAAAACCGAGAAAATTTACCGAATATGTTGAAAGTGTTAATCCTT
*
2806138 TTTATAAAAATGTATCGATACTTTACAATAAAACAGGTAAAAAATATGACAAAACCAGTTTCATT
1 TTTATAAAAATGTATCAATACTTTACAATAAAACAGGT-AAAAATATGACAAAACCAGTTTCATT
* * * *
2806203 ATGATAAAATCGGGAAAATTTACCTAATATGTTGAAAGT
65 ATGACAAAACCGAGAAAATTTACCGAATATGTTGAAAGT
2806242 ATCGATCCTT
Statistics
Matches: 92, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
113 35 0.38
114 57 0.62
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (113 bp):
TTTATAAAAATGTATCAATACTTTACAATAAAACAGGTAAAAATATGACAAAACCAGTTTCATTA
TGACAAAACCGAGAAAATTTACCGAATATGTTGAAAGTGTTAATCCTT
Found at i:2806279 original size:94 final size:95
Alignment explanation
Indices: 2806159--2806348 Score: 319
Period size: 94 Copynumber: 2.0 Consensus size: 95
2806149 GTATCGATAC
* *
2806159 TTTACAATAAAACAGGTAAAAAATATGACAAAACCAGTTTCATTATGATAAAATCGGGAAAATTT
1 TTTACAATAAAACAGGTAAAAAATATGACAAAACCAGTTTCATTATGAAAAAACCGGGAAAATTT
2806224 ACCTAATATGTTGAAAGTATCGATCCTTTT
66 ACCTAATATGTTGAAAGTATCGATCCTTTT
* * *
2806254 TTTACAATATAACAGGT-AAAAATATGACAAAATCAGTTTCATTATGAAAAAACCGGTAAAATTT
1 TTTACAATAAAACAGGTAAAAAATATGACAAAACCAGTTTCATTATGAAAAAACCGGGAAAATTT
*
2806318 ACCTGATATGTTGAAAGTATCGATCCTTTT
66 ACCTAATATGTTGAAAGTATCGATCCTTTT
2806348 T
1 T
2806349 ATAAAAAGGA
Statistics
Matches: 89, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
94 73 0.82
95 16 0.18
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.33
Consensus pattern (95 bp):
TTTACAATAAAACAGGTAAAAAATATGACAAAACCAGTTTCATTATGAAAAAACCGGGAAAATTT
ACCTAATATGTTGAAAGTATCGATCCTTTT
Found at i:2806388 original size:112 final size:112
Alignment explanation
Indices: 2806253--2806579 Score: 537
Period size: 112 Copynumber: 2.9 Consensus size: 112
2806243 TCGATCCTTT
*
2806253 TTTTACAATATAACAGGTAAAAATATGACAAAATCAGTTTCATTATGAAAAAACCGGTAAAATTT
1 TTTTACAATATAACATGTAAAAATATGACAAAATCAGTTTCATTATGAAAAAACCGGTAAAATTT
*
2806318 ACCTGATATGTTGAAAGTATCGATCCTTTTTATAAAAAGGATCGATA
66 ACCTAATATGTTGAAAGTATCGATCCTTTTTATAAAAAGGATCGATA
* * * * *
2806365 TTTTACAATATAACATGTAAAAATATGATAAAACCAGTTTCATTATGAGAAAATCGGTAAGATTT
1 TTTTACAATATAACATGTAAAAATATGACAAAATCAGTTTCATTATGAAAAAACCGGTAAAATTT
*
2806430 ACCTAATATGTTGAAAGTATCGATCATTTTTATAAAAAGGATCGATA
66 ACCTAATATGTTGAAAGTATCGATCCTTTTTATAAAAAGGATCGATA
* * *
2806477 CTTTATAATATAACATGTAAAAATATGACAAAATCAGTTTCATTATGAAAAAACCCGTAAAATTT
1 TTTTACAATATAACATGTAAAAATATGACAAAATCAGTTTCATTATGAAAAAACCGGTAAAATTT
* *
2806542 ACCTAATATGTTGAAAGTATCAATTCTTTTTATAAAAA
66 ACCTAATATGTTGAAAGTATCGATCCTTTTTATAAAAA
2806580 TATACCGATA
Statistics
Matches: 196, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
112 196 1.00
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.34
Consensus pattern (112 bp):
TTTTACAATATAACATGTAAAAATATGACAAAATCAGTTTCATTATGAAAAAACCGGTAAAATTT
ACCTAATATGTTGAAAGTATCGATCCTTTTTATAAAAAGGATCGATA
Found at i:2812857 original size:2 final size:2
Alignment explanation
Indices: 2812850--2812885 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
2812840 AAAAGAGTGT
2812850 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2812886 TACTTTTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2820304 original size:18 final size:18
Alignment explanation
Indices: 2820281--2820316 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
2820271 CGTAGAAATT
*
2820281 TGTCCCGTAGGACCACTG
1 TGTCCCGAAGGACCACTG
2820299 TGTCCCGAAGGACCACTG
1 TGTCCCGAAGGACCACTG
2820317 ATAATCCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.19
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTG
Found at i:2825346 original size:24 final size:21
Alignment explanation
Indices: 2825316--2825375 Score: 68
Period size: 20 Copynumber: 2.8 Consensus size: 21
2825306 AATGCATGAG
2825316 GAATGCATCGATGCACATGTTAA
1 GAATGCATCGATGCACATG-T-A
* *
2825339 GGGATGCATCGATACA-ATGTA
1 -GAATGCATCGATGCACATGTA
2825360 GAATGCATCGATGCAC
1 GAATGCATCGATGCAC
2825376 TTCAAGGGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
20 13 0.42
21 1 0.03
22 1 0.03
23 3 0.10
24 13 0.42
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.23
Consensus pattern (21 bp):
GAATGCATCGATGCACATGTA
Found at i:2826941 original size:23 final size:23
Alignment explanation
Indices: 2826911--2826964 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
2826901 ACATTTTATA
2826911 TGGCACTTCGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
* *
2826934 TGGCACTTCGTTGTAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
2826957 TGGCACTT
1 TGGCACTT
2826965 AAGTGCATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:2827162 original size:21 final size:19
Alignment explanation
Indices: 2827134--2827172 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
2827124 ATGTAATGTC
*
2827134 GAATATATTATTTGTTAAAT
1 GAATATATGA-TTGTTAAAT
2827154 GAATGATATGATTGTTAAA
1 GAAT-ATATGATTGTTAAA
2827173 AAGTTAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (19 bp):
GAATATATGATTGTTAAAT
Found at i:2830288 original size:43 final size:39
Alignment explanation
Indices: 2830233--2830328 Score: 104
Period size: 43 Copynumber: 2.4 Consensus size: 39
2830223 GAATGTAATT
*
2830233 AATGCATTGATGCAT-AAGGAATGCATCAATGCACATGTTAAGG
1 AATGCATCGATGCATGAA-GAATGCATCAATGCAC-TG-T-A-G
* * *
2830276 GATGCATCGATGCATGTAGAATGCATCGATGCACTGTAG
1 AATGCATCGATGCATGAAGAATGCATCAATGCACTGTAG
2830315 AATGCATCGATGCA
1 AATGCATCGATGCA
2830329 CTTCAAGGGG
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
39 14 0.30
40 1 0.02
41 1 0.02
42 2 0.04
43 28 0.60
44 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (39 bp):
AATGCATCGATGCATGAAGAATGCATCAATGCACTGTAG
Found at i:2830315 original size:20 final size:20
Alignment explanation
Indices: 2830277--2830330 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
2830267 ATGTTAAGGG
2830277 ATGCATCGATGCA-TGTAGA
1 ATGCATCGATGCACTGTAGA
2830296 ATGCATCGATGCACTGTAGA
1 ATGCATCGATGCACTGTAGA
2830316 ATGCATCGATGCACT
1 ATGCATCGATGCACT
2830331 TCAAGGGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 13 0.38
20 21 0.62
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (20 bp):
ATGCATCGATGCACTGTAGA
Found at i:2831896 original size:23 final size:23
Alignment explanation
Indices: 2831870--2831926 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
2831860 TTTATACGGA
* *
2831870 ACTTCAGTGCAATTCTACGCGGC
1 ACTTCGGTGCAATTCTAAGCGGC
* *
2831893 ACTTTGGTGCAATTCTAAGTGGC
1 ACTTCGGTGCAATTCTAAGCGGC
2831916 ACTTCGGTGCA
1 ACTTCGGTGCA
2831927 TTTATACGAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.30
Consensus pattern (23 bp):
ACTTCGGTGCAATTCTAAGCGGC
Found at i:2834572 original size:23 final size:23
Alignment explanation
Indices: 2834519--2834623 Score: 133
Period size: 23 Copynumber: 4.7 Consensus size: 23
2834509 CCATATAAAA
* *
2834519 TGTCCTGAAGGACCACATA-TA-
1 TGTCCCGAAGGACCACATAGAAT
* *
2834540 TGTCCCGAAGGACCTCGTAGAAT
1 TGTCCCGAAGGACCACATAGAAT
* *
2834563 TGTCCTGAAGGACCACGTAGAAT
1 TGTCCCGAAGGACCACATAGAAT
*
2834586 TGTCCCAAAGGACCACATAGAAT
1 TGTCCCGAAGGACCACATAGAAT
2834609 TGTCCCGAAGGACCA
1 TGTCCCGAAGGACCA
2834624 TATATATGTC
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
21 16 0.22
22 1 0.01
23 55 0.76
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.20
Consensus pattern (23 bp):
TGTCCCGAAGGACCACATAGAAT
Found at i:2834607 original size:46 final size:44
Alignment explanation
Indices: 2834519--2834643 Score: 142
Period size: 46 Copynumber: 2.8 Consensus size: 44
2834509 CCATATAAAA
* * * *
2834519 TGTCCTGAAGGACCACATATATGTCCCGAAGGACCTCGTAGAAT
1 TGTCCTGAAGGACCACATAAATGTCCCAAAGGACCACATAGAAT
*
2834563 TGTCCTGAAGGACCACGTAGAATTGTCCCAAAGGACCACATAGAAT
1 TGTCCTGAAGGACCACATA-AA-TGTCCCAAAGGACCACATAGAAT
* * * * *
2834609 TGTCCCGAAGGACCATATATATGTCTCGAAGGACC
1 TGTCCTGAAGGACCACATAAATGTCCCAAAGGACC
2834644 GTGTAGAACC
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 30 0.44
45 2 0.03
46 36 0.53
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (44 bp):
TGTCCTGAAGGACCACATAAATGTCCCAAAGGACCACATAGAAT
Found at i:2837325 original size:20 final size:20
Alignment explanation
Indices: 2837300--2837369 Score: 56
Period size: 20 Copynumber: 3.5 Consensus size: 20
2837290 AATGAATTTG
2837300 GTATCGATACCACTCTATGA
1 GTATCGATACCACTCTATGA
*
2837320 GTATCGGTACCTTAC-CTAT-A
1 GTATCGATACC--ACTCTATGA
* * *
2837340 ATATCGATACCCATTGTATG-
1 GTATCGATA-CCACTCTATGA
2837360 GTATCGATAC
1 GTATCGATAC
2837370 GTCTAGCCTA
Statistics
Matches: 39, Mismatches: 6, Indels: 11
0.70 0.11 0.20
Matches are distributed among these distances:
19 2 0.05
20 29 0.74
21 6 0.15
22 2 0.05
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.33
Consensus pattern (20 bp):
GTATCGATACCACTCTATGA
Found at i:2840717 original size:32 final size:32
Alignment explanation
Indices: 2840696--2840781 Score: 136
Period size: 32 Copynumber: 2.7 Consensus size: 32
2840686 AACACTCTTA
2840696 TGCATTATCTAAATGCAACACTGACTCTACTG
1 TGCATTATCTAAATGCAACACTGACTCTACTG
* * *
2840728 TGCATTATCTAGATGCAACATTGACTCTGCTG
1 TGCATTATCTAAATGCAACACTGACTCTACTG
*
2840760 TGTATTATCTAAATGCAACACT
1 TGCATTATCTAAATGCAACACT
2840782 TCTAGTATCT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 48 1.00
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (32 bp):
TGCATTATCTAAATGCAACACTGACTCTACTG
Found at i:2844546 original size:65 final size:65
Alignment explanation
Indices: 2844442--2844627 Score: 291
Period size: 65 Copynumber: 2.9 Consensus size: 65
2844432 TATTTTCTCA
* * *
2844442 ATGTTCAAAATAAAAATATTACATAAAAGTATCAAGTCTCAATAACACAATAAAATCAACAAAAG
1 ATGTTCAAAATAAAAATACTACACAAAAGTATCAAGTCTCAATAACATAATAAAATCAACAAAAG
* * * * *
2844507 ATGTTCGAAATAAAAATACCACACAAGAGTATCAAGTCTCAATGACATAATAAAATCAACACAAG
1 ATGTTCAAAATAAAAATACTACACAAAAGTATCAAGTCTCAATAACATAATAAAATCAACAAAAG
*
2844572 ATGTTCAAAATAAAAATACTACACAAAAGTATCAAGTCTCAACAACATAATAAAAT
1 ATGTTCAAAATAAAAATACTACACAAAAGTATCAAGTCTCAATAACATAATAAAAT
2844628 AGATTGTAAG
Statistics
Matches: 108, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 108 1.00
ACGTcount: A:0.54, C:0.16, G:0.08, T:0.22
Consensus pattern (65 bp):
ATGTTCAAAATAAAAATACTACACAAAAGTATCAAGTCTCAATAACATAATAAAATCAACAAAAG
Found at i:2845293 original size:18 final size:18
Alignment explanation
Indices: 2845272--2845306 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
2845262 CTTTAAGTGA
*
2845272 AAGTGGATAAAGAAATAG
1 AAGTGGAGAAAGAAATAG
*
2845290 AAGTGGAGGAAGAAATA
1 AAGTGGAGAAAGAAATA
2845307 TCACTTGTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.31, T:0.14
Consensus pattern (18 bp):
AAGTGGAGAAAGAAATAG
Found at i:2847928 original size:41 final size:41
Alignment explanation
Indices: 2847871--2847962 Score: 184
Period size: 41 Copynumber: 2.2 Consensus size: 41
2847861 GAACGAATTT
2847871 ATAAAATTTTAAAAATAAAAATATATTATTAATAAATAATA
1 ATAAAATTTTAAAAATAAAAATATATTATTAATAAATAATA
2847912 ATAAAATTTTAAAAATAAAAATATATTATTAATAAATAATA
1 ATAAAATTTTAAAAATAAAAATATATTATTAATAAATAATA
2847953 ATAAAATTTT
1 ATAAAATTTT
2847963 GAAAGTAGTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (41 bp):
ATAAAATTTTAAAAATAAAAATATATTATTAATAAATAATA
Found at i:2847952 original size:24 final size:23
Alignment explanation
Indices: 2847880--2847953 Score: 79
Period size: 24 Copynumber: 3.4 Consensus size: 23
2847870 TATAAAATTT
2847880 TAAAAATAAAAATATATTATTAA
1 TAAAAATAAAAATATATTATTAA
*
2847903 TAAATAATAATAA-A-A-T-TT--
1 TAAA-AATAAAAATATATTATTAA
2847921 TAAAAATAAAAATATATTATTAA
1 TAAAAATAAAAATATATTATTAA
2847944 TAAATAATAA
1 TAAA-AATAA
2847954 TAAAATTTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 15
0.71 0.03 0.26
Matches are distributed among these distances:
17 7 0.17
18 5 0.12
19 1 0.02
20 3 0.07
21 3 0.07
22 1 0.02
23 9 0.22
24 12 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (23 bp):
TAAAAATAAAAATATATTATTAA
Found at i:2855737 original size:20 final size:19
Alignment explanation
Indices: 2855714--2855759 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 19
2855704 CGATATAACA
2855714 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
2855734 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
2855754 GGTAAA
1 GGTAAA
2855760 GCGCTACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 1 0.04
20 19 0.83
21 3 0.13
ACGTcount: A:0.52, C:0.11, G:0.17, T:0.20
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:2859555 original size:21 final size:21
Alignment explanation
Indices: 2859529--2859568 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
2859519 CAGAACCCTA
*
2859529 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
2859550 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
2859569 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:2859597 original size:20 final size:21
Alignment explanation
Indices: 2859551--2859611 Score: 79
Period size: 20 Copynumber: 2.9 Consensus size: 21
2859541 TTCCCCTGTG
2859551 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
2859574 GGGGGAATCGGTTCCCTC-AA
1 GGGGGAATCGGTTCCCTCAAA
* *
2859594 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
2859612 TGCACCAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 18 0.50
21 2 0.06
22 3 0.08
23 13 0.36
ACGTcount: A:0.18, C:0.26, G:0.34, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:2867384 original size:21 final size:21
Alignment explanation
Indices: 2867358--2867403 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
2867348 TCATGATTCA
2867358 AAGAGAAACTTGAGAGAGTCG
1 AAGAGAAACTTGAGAGAGTCG
2867379 AAGAGAAACTTGAGAGAGTCG
1 AAGAGAAACTTGAGAGAGTCG
2867400 AAGA
1 AAGA
2867404 TACAATTCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.46, C:0.09, G:0.33, T:0.13
Consensus pattern (21 bp):
AAGAGAAACTTGAGAGAGTCG
Found at i:2867486 original size:33 final size:33
Alignment explanation
Indices: 2867449--2867514 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
2867439 AAATAGATGG
* *
2867449 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGAGGTGA
* *
2867482 AGTGGTGAAATAAGTTGAGGTGTTAAGAGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGAGGTGA
2867515 TCTTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.32, C:0.00, G:0.44, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGAGGTGA
Found at i:2869971 original size:201 final size:201
Alignment explanation
Indices: 2869619--2870336 Score: 1186
Period size: 201 Copynumber: 3.6 Consensus size: 201
2869609 AAATATGCAT
* *
2869619 CCATAAGTATAATGTAATAGGTAAATTTTCAATGTAACCGGTATAAATATACC-AGTTTTATGAG
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGA-TTTTATGAG
* * *
2869683 AGAATAGGTCTACAACATGTATCAACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATG
65 AGAATAGGTCTACAACATGTATCGACACGTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATA
* * *
2869748 GATGCAAAAAAAGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCGAGAAACA
130 GATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACA
2869813 TCGAAAC
195 TCGAAAC
2869820 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
* * *
2869885 AAATAGGTGTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATAG
66 GAATAGGTCTACAACATGTATCGACACGTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATAG
* * *
2869950 ATACCAAAAAGGGTGAACGCATAAAGTGTTGATACATTTTCAAAAAGTGTCGATCCTAGAAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACAT
*
2870015 TGAAAC
196 CGAAAC
*
2870021 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACTGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
* * *
2870086 GAATAGGTCTATAACATGTATCGACACGTTTTTAATTTTGTGTCAATACTTTTGGTCCAGAATTG
66 GAATAGGTCTACAACATGTATCGACACGTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATAG
* *
2870151 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATAAATTTTCAAAAAGTGTCGATCCCAAAAACAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACAT
2870216 CGAAAC
196 CGAAAC
* * **
2870222 CCATAATTATAATGTAATAGGTAAATTTTCAATTTAATTGGTATAAATATACCGATTTTATGAGA
1 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
*
2870287 GAATAGGTTTACAACATGTATCGACACGTTTTTAATTTTGTGTCGATACT
66 GAATAGGTCTACAACATGTATCGACACGTTTTTAATTTTGTGTCGATACT
2870337 AATTTAAATA
Statistics
Matches: 483, Mismatches: 33, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
201 482 1.00
202 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (201 bp):
CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATACCGATTTTATGAGA
GAATAGGTCTACAACATGTATCGACACGTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATAG
ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAGAAACAT
CGAAAC
Found at i:2871838 original size:3 final size:3
Alignment explanation
Indices: 2871807--2871850 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
2871797 CAAGGTGTCA
* * * *
2871807 ATG AAG ATG AAG ATG ACG ATG ATG CTG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
2871851 CCAAATAAGT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.36, C:0.05, G:0.32, T:0.27
Consensus pattern (3 bp):
ATG
Found at i:2873515 original size:230 final size:229
Alignment explanation
Indices: 2873154--2873585 Score: 598
Period size: 230 Copynumber: 1.9 Consensus size: 229
2873144 TAACGACCCA
* * * *
2873154 AAAAATATCGAAACCCATAATTATAATGTAATGGGTAATTTTTCAAAATAACCGGTATAAATATA
1 AAAAACATCAAAACCCATAATTATAATGTAATAGGTAATTTTTCAAAATAACCAGTATAAATATA
* * ** * * *
2873219 CGGTTTTATGAAAAATATGTCTACAATATTTATCGACACTTATTAGTATTGTGTCGATACTTTTT
66 CAGTTTTATGAAAAATAGGTCTACAATATGAATCGACACTTATTAATATCGTGTCGATAATTTTT
* * *
2873284 GTCCAGAATGGATTCCAAAAAGGGTGAAC-CTACAAAGTGTCAATACATTTTCATAGAGTGTCGA
131 GTCCAGAATGGATGCCAAAAAGGGTGAACGC-ACAAAGTGTCAATACATTTTCAAAAAGTGTCGA
2873348 T-CCAAAAGGGTTGCACGCATAAAGTGTCGATCCC
195 TCCCAAAAGGGTTGCACGCATAAAGTGTCGATCCC
* * * *
2873382 AAAAACATCAAAACCCATAATTATACTGTAATAGGTAATTTTTTAATATAACCAGTATACATATT
1 AAAAACATCAAAACCCATAATTATAATGTAATAGGTAATTTTTCAAAATAACCAGTATAAATA-T
* * *
2873447 CCAGTTTTATGAGAGAATAGGTCTATAATATGAATCGACACTTATTAATATCGTGTCGATAATTT
65 ACAGTTTTATGA-AAAATAGGTCTACAATATGAATCGACACTTATTAATATCGTGTCGATAATTT
* * * *
2873512 TTGTCCATAATGGATGCCAAAACGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCG
129 TTGTCCAGAATGGATGCCAAAAAGGGTGAACGCACAAAGTGTCAATACATTTTCAAAAAGTGTCG
2873577 ATCCCAAAA
194 ATCCCAAAA
2873586 ACATCGAAAC
Statistics
Matches: 175, Mismatches: 25, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
228 55 0.31
229 11 0.06
230 102 0.58
231 7 0.04
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (229 bp):
AAAAACATCAAAACCCATAATTATAATGTAATAGGTAATTTTTCAAAATAACCAGTATAAATATA
CAGTTTTATGAAAAATAGGTCTACAATATGAATCGACACTTATTAATATCGTGTCGATAATTTTT
GTCCAGAATGGATGCCAAAAAGGGTGAACGCACAAAGTGTCAATACATTTTCAAAAAGTGTCGAT
CCCAAAAGGGTTGCACGCATAAAGTGTCGATCCC
Found at i:2876595 original size:200 final size:196
Alignment explanation
Indices: 2876191--2876919 Score: 675
Period size: 200 Copynumber: 3.6 Consensus size: 196
2876181 ACCTAAATAT
* * * *
2876191 GTGTCGATATATTTTATACAAGAATCGA-CCCAAAAACATCAAAACCAATAATTATAATGTAATA
1 GTGTCGATACA-TTTATAAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAATA
* * * * * * *
2876255 GGTAAA-TTAAAATGTAACCAATATAAATATACC-GATTAATTAGAAAACATGTCAATATAATGT
65 GGTAAATTTACAATGTAACCGATATAAATATACCGGTTTTATGAGAAAATAGGTCAA-ATAATGT
* * * *
2876318 ATCGACACTTGTGTAATTTGTGTCGATACTTATTGTCTAGGATGAATGCACA-AACGAGGTGC-A
129 ATCGACACTTGT-TAATTTGTGTCGATACTT-TTGTCCAGAATGAATAC-CATAAAG-GGTGCAA
2876381 CGCATAAA
190 C-CATAAA
* * *
2876389 GTGTCGATACATTTATTAAAAGTATTGATCCCAAAAACATCGAAACCGATAATTATAATGTATTA
1 GTGTCGATACATTTA-TAAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAATA
* * *
2876454 GGTAAATTTACAATGTAACCGATATAAATATACCGGTTTTATGATAAAATAGGTCAGCATAAAGT
65 GGTAAATTTACAATGTAACCGATATAAATATACCGGTTTTATGAGAAAATAGGTCA-AATAATGT
* *
2876519 ATCGACACTTGATAAATTTGAGTCGATACTTTTGGTCCAGAATGAATACCATAAAGGGTGCAACC
129 ATCGACACTTG-TTAATTTGTGTCGATACTTTT-GTCCAGAATGAATACCATAAAGGGTGCAACC
2876584 ATAAA
192 ATAAA
** * * *
2876589 GTGTCGATACATTTATAAAAAGTATCGATCCCGGAAACATCGAAACCCATAAGTATAATATAATA
1 GTGTCGATACATTTAT-AAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAATA
* * * * * * *
2876654 GGTAAATTTTCAATGTAACTGGTATAAATATATCAGTTTTATGAGATAATAGATCTAAATAATGT
65 GGTAAATTTACAATGTAACCGATATAAATATACCGGTTTTATGAGAAAATAGGTC-AAATAATGT
* * **
2876719 ATCGACACGTTGTTAGTTTGTGTCGATACTTTTTTCCAGAATGAAATATGAATGCCCAATCA-GG
129 ATCGACAC-TTGTTAATTTGTGTCGATACTTTTGTCCAGAATG-AATA-CCAT----AA--AGGG
*
2876783 TGCAAGCATAAA
185 TGCAACCATAAA
* ** *** * *
2876795 GTGTCGATACATTTA-AAATTGTATCGATCTAAAAAACATTTTAACCTATAATAATAATGT-ATA
1 GTGTCGATACATTTATAAA-AGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAATA
* ** * * **
2876858 GGTAAATTTGCAATGTTCCCGGTATAAATATACC-GATTTACTTCGAAAATAGGTCAATATAA
65 GGTAAATTTACAATGTAACCGATATAAATATACCGGTTTTA-TGAGAAAATAGGTCAA-ATAA
2876920 GCGCTACCTA
Statistics
Matches: 439, Mismatches: 69, Indels: 40
0.80 0.13 0.07
Matches are distributed among these distances:
197 4 0.01
198 19 0.04
199 49 0.11
200 179 0.41
201 71 0.16
202 1 0.00
203 7 0.02
204 49 0.11
205 31 0.07
206 28 0.06
207 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (196 bp):
GTGTCGATACATTTATAAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAATAG
GTAAATTTACAATGTAACCGATATAAATATACCGGTTTTATGAGAAAATAGGTCAAATAATGTAT
CGACACTTGTTAATTTGTGTCGATACTTTTGTCCAGAATGAATACCATAAAGGGTGCAACCATAA
A
Found at i:2877016 original size:87 final size:87
Alignment explanation
Indices: 2876914--2877076 Score: 317
Period size: 87 Copynumber: 1.9 Consensus size: 87
2876904 AAATAGGTCA
2876914 ATATAAGCGCTACCTATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTT
2876979 CCGGTTAAATGCCTATTTTATT
66 CCGGTTAAATGCCTATTTTATT
*
2877001 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTT
2877066 CCGGTTAAATG
66 CCGGTTAAATG
2877077 ATATAACATT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 75 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTT
CCGGTTAAATGCCTATTTTATT
Found at i:2877048 original size:23 final size:23
Alignment explanation
Indices: 2876998--2877042 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
2876988 TGCCTATTTT
*
2876998 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAGCGCTACCTAATAC
2877021 ATTATATAAGCGCTACCTAATA
1 ATTATATAAGCGCTACCTAATA
2877043 TGTTATTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:2879296 original size:15 final size:16
Alignment explanation
Indices: 2879267--2879300 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
2879257 CTTAAGCCTT
2879267 CTCAAAACATTTTTTA
1 CTCAAAACATTTTTTA
*
2879283 CTCAAAACTTTTTTTA
1 CTCAAAACATTTTTTA
2879299 CT
1 CT
2879301 TGTATGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47
Consensus pattern (16 bp):
CTCAAAACATTTTTTA
Found at i:2885886 original size:28 final size:28
Alignment explanation
Indices: 2885803--2885874 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
2885793 GACCACGTAG
*
2885803 ATGTCCCGAAGGACCACATATAACACAT
1 ATGTCCCGAAGGACCACATATAACAAAT
2885831 ATGTCCCGAAGGACCACATATAACAAAT
1 ATGTCCCGAAGGACCACATATAACAAAT
2885859 ATGTCCCGAA-GACCAC
1 ATGTCCCGAAGGACCAC
2885875 TATGTCCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
27 6 0.14
28 37 0.86
ACGTcount: A:0.39, C:0.29, G:0.15, T:0.17
Consensus pattern (28 bp):
ATGTCCCGAAGGACCACATATAACAAAT
Found at i:2889762 original size:20 final size:21
Alignment explanation
Indices: 2889732--2889770 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
2889722 GCGTAGAATT
2889732 TATCTCGAAGGACCACATAGA
1 TATCTCGAAGGACCACATAGA
2889753 TATC-CGAAGGACCACATA
1 TATCTCGAAGGACCACATA
2889771 TAACACATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.18
Consensus pattern (21 bp):
TATCTCGAAGGACCACATAGA
Found at i:2890768 original size:63 final size:64
Alignment explanation
Indices: 2890701--2890856 Score: 192
Period size: 63 Copynumber: 2.5 Consensus size: 64
2890691 CCTTTAACAT
* * *
2890701 GTGCATCGATGCACTACCCATGCATCGATACACAAATCACCTTCGATGTTT-TAATATT-AAGGG
1 GTGCATCGATGCACTACCTATGCATCGATACACAAATCACATTCGATGTTTGT-ATATTAAACGG
* * * * * *
2890764 GTGCATCGATGAACTACTTGTGCATCGATACACTAATGACATTCGATGTTTGTATTTTAAACGG
1 GTGCATCGATGCACTACCTATGCATCGATACACAAATCACATTCGATGTTTGTATATTAAACGG
2890828 GTGCATCGATGCACT-CCTTATGCATCGAT
1 GTGCATCGATGCACTACC-TATGCATCGAT
2890857 GCACTATTGG
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
63 49 0.63
64 29 0.37
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (64 bp):
GTGCATCGATGCACTACCTATGCATCGATACACAAATCACATTCGATGTTTGTATATTAAACGG
Found at i:2890862 original size:64 final size:63
Alignment explanation
Indices: 2890701--2890877 Score: 196
Period size: 64 Copynumber: 2.8 Consensus size: 63
2890691 CCTTTAACAT
* * * * *
2890701 GTGCATCGATGCACTACC-CATGCATCGATACACAAATCACCTTCGATGTTTTAATATTAAGGG
1 GTGCATCGATGCACT-CCTTATGCATCGATACACTAATGACATTCGATGTTTTAATATTAACGG
* * * *
2890764 GTGCATCGATGAACTACTTGTGCATCGATACACTAATGACATTCGATGTTTGT-ATTTTAAACGG
1 GTGCATCGATGCACTCCTTATGCATCGATACACTAATGACATTCGATGTTT-TAATATT-AACGG
* * * *
2890828 GTGCATCGATGCACTCCTTATGCATCGATGCACTATTGGCATTCGTTGTT
1 GTGCATCGATGCACTCCTTATGCATCGATACACTAATGACATTCGATGTT
2890878 CAATATTTGA
Statistics
Matches: 95, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
62 1 0.01
63 46 0.48
64 48 0.51
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (63 bp):
GTGCATCGATGCACTCCTTATGCATCGATACACTAATGACATTCGATGTTTTAATATTAACGG
Done.