Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008304.1 Hibiscus syriacus cultivar Beakdansim tig00110990_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 283871
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:5181 original size:64 final size:64
Alignment explanation
Indices: 5113--5288 Score: 214
Period size: 64 Copynumber: 2.8 Consensus size: 64
5103 AAAATAAAGG
* ** *
5113 CATCGAATGCAATTCGTGCATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAGTGA-AA
1 CATCGAATACAATTCGTGCATCGATGCATAAGTAGTGCATCGATGCATCCCAACAATAAT-ACAA
* *
5177 CATCGAATACAA-TCGGTGCATCGATGCATAAGGAGTGCATCGATGCATCCCAACAATAATACTA
1 CATCGAATACAATTC-GTGCATCGATGCATAAGTAGTGCATCGATGCATCCCAACAATAATACAA
* * * *
5241 CATCGAATAC-CTTTGATGCACCGATGCATCAGTAGTGCATCGATGCAT
1 CATCGAATACAATTCG-TGCATCGATGCATAAGTAGTGCATCGATGCAT
5289 ACCTTCATTA
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
63 4 0.04
64 93 0.96
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (64 bp):
CATCGAATACAATTCGTGCATCGATGCATAAGTAGTGCATCGATGCATCCCAACAATAATACAA
Found at i:5611 original size:12 final size:12
Alignment explanation
Indices: 5594--5640 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
5584 ATATATGTTC
5594 ATGTGATATGAT
1 ATGTGATATGAT
5606 ATGTGATATGAT
1 ATGTGATATGAT
*
5618 ATGTGATATGAC
1 ATGTGATATGAT
*
5630 ATGTAATATGA
1 ATGTGATATGA
5641 GAACATGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.36, C:0.02, G:0.23, T:0.38
Consensus pattern (12 bp):
ATGTGATATGAT
Found at i:5804 original size:15 final size:15
Alignment explanation
Indices: 5784--5830 Score: 94
Period size: 15 Copynumber: 3.1 Consensus size: 15
5774 CGAGGTATAA
5784 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
5799 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
5814 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
5829 TA
1 TA
5831 ATGGTCCTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.15, C:0.19, G:0.32, T:0.34
Consensus pattern (15 bp):
TAGTCCTTCGGGATG
Found at i:8971 original size:14 final size:14
Alignment explanation
Indices: 8954--8980 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8944 TATATCTTTT
8954 AAAATAATTTTAAG
1 AAAATAATTTTAAG
8968 AAAATAATTTTAA
1 AAAATAATTTTAA
8981 AAGATAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (14 bp):
AAAATAATTTTAAG
Found at i:10017 original size:32 final size:32
Alignment explanation
Indices: 9943--10076 Score: 209
Period size: 32 Copynumber: 4.2 Consensus size: 32
9933 AAGTTAGCGG
* *
9943 GTTAGTTTGAACAATAAAATAAAATGTTAGTAA
1 GTTAGTATGAACAATAAAATAAAA-GTTAGTAT
*
9976 GTTAGTATGAACAATAAAATAAAAGTGAGTAT
1 GTTAGTATGAACAATAAAATAAAAGTTAGTAT
10008 GTTAGTATGAACAATAAAATAAAAGTTAGTAT
1 GTTAGTATGAACAATAAAATAAAAGTTAGTAT
*
10040 GTTAGTATGAAC-A-AGAATAAAAGTTAGTAT
1 GTTAGTATGAACAATAAAATAAAAGTTAGTAT
10070 GTTAGTA
1 GTTAGTA
10077 GTTAATATAA
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
30 23 0.24
31 1 0.01
32 49 0.51
33 23 0.24
ACGTcount: A:0.48, C:0.03, G:0.18, T:0.31
Consensus pattern (32 bp):
GTTAGTATGAACAATAAAATAAAAGTTAGTAT
Found at i:11452 original size:3 final size:3
Alignment explanation
Indices: 11444--11500 Score: 60
Period size: 3 Copynumber: 18.3 Consensus size: 3
11434 TAAAAACATA
* * *
11444 AAT AAT AAT AAT ATT AAAT AAA AAT AAC AAT AAT AAT AAT AAT AAAT
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
*
11491 ATT AAT AAT A
1 AAT AAT AAT A
11501 TATATAAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
3 39 0.89
4 5 0.11
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:11475 original size:22 final size:21
Alignment explanation
Indices: 11429--11515 Score: 68
Period size: 22 Copynumber: 3.9 Consensus size: 21
11419 CCTGTAAAAT
* *
11429 TAATATAAAAACATAAATAATAA
1 TAATATAAATA-A-AAATAACAA
11452 TAATATTAAATAAAAATAACAA
1 TAATA-TAAATAAAAATAACAA
**
11474 TAATA-ATAATAATAAATATTAA
1 TAATATA-AATAA-AAATAACAA
*
11496 TAATATATATAAAAAATAAC
1 TAATATAAAT-AAAAATAAC
11516 CTAGACAAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
20 1 0.02
21 5 0.10
22 32 0.62
23 9 0.17
24 5 0.10
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (21 bp):
TAATATAAATAAAAATAACAA
Found at i:11475 original size:28 final size:28
Alignment explanation
Indices: 11427--11491 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
11417 GACCTGTAAA
11427 ATTAATATAAAAACATAAATAATAATAAT
1 ATTAA-ATAAAAACATAAATAATAATAAT
*
11456 ATTAAATAAAAATA-ACAATAATAATAAT
1 ATTAAATAAAAACATA-AATAATAATAAT
*
11484 AATAAATA
1 ATTAAATA
11492 TTAATAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
27 1 0.03
28 27 0.82
29 5 0.15
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (28 bp):
ATTAAATAAAAACATAAATAATAATAAT
Found at i:16969 original size:34 final size:33
Alignment explanation
Indices: 16893--16969 Score: 84
Period size: 34 Copynumber: 2.2 Consensus size: 33
16883 GTGGTAAGAA
* * *
16893 ATTTATTTTTATGTTAGTATTTTTTTAAATAGTT
1 ATTT-TTTTTATATTAATATTTTTGTAAATAGTT
16927 ATTATTTTTTATATTAATATATTTATGTAAATA-TT
1 ATT-TTTTTTATATTAATAT-TTT-TGTAAATAGTT
16962 ATTTTTTT
1 ATTTTTTT
16970 ATTAAAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
34 21 0.57
35 9 0.24
36 7 0.19
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (33 bp):
ATTTTTTTTATATTAATATTTTTGTAAATAGTT
Found at i:16995 original size:33 final size:31
Alignment explanation
Indices: 16916--17003 Score: 95
Period size: 32 Copynumber: 2.7 Consensus size: 31
16906 TTAGTATTTT
* * *
16916 TTTAAATAGTTATTATTTTTTATATTAATATA
1 TTTATATAATTATTATTTTTT-TATTAAAATA
* *
16948 TTTATGTAAATATTATTTTTTTATTAAAATAA
1 TTTATATAATTATTATTTTTTTATTAAAAT-A
*
16980 TATTATATAATTATTATTTATTTA
1 T-TTATATAATTATTATTTTTTTA
17004 GAATTATTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
31 8 0.17
32 19 0.41
33 19 0.41
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (31 bp):
TTTATATAATTATTATTTTTTTATTAAAATA
Found at i:17164 original size:17 final size:17
Alignment explanation
Indices: 17142--17195 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
17132 AATGTTAATA
17142 TTTAAATTTATTTTTAT
1 TTTAAATTTATTTTTAT
* * * *
17159 TTTAAAGTTATTATGAA
1 TTTAAATTTATTTTTAT
* *
17176 TTTATATTAATTTTTAT
1 TTTAAATTTATTTTTAT
17193 TTT
1 TTT
17196 TTATAATATA
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (17 bp):
TTTAAATTTATTTTTAT
Found at i:18753 original size:21 final size:21
Alignment explanation
Indices: 18723--18770 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
18713 GCAGGGGTAC
* *
18723 ATGCCCAGCCCTCCACTTCAT
1 ATGCCAAGCCCACCACTTCAT
* *
18744 ATGCCAAGCCCACCAGTTTAT
1 ATGCCAAGCCCACCACTTCAT
18765 ATGCCA
1 ATGCCA
18771 TCTCCGCAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.40, G:0.12, T:0.23
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTCAT
Found at i:18846 original size:21 final size:21
Alignment explanation
Indices: 18780--18838 Score: 109
Period size: 21 Copynumber: 2.8 Consensus size: 21
18770 ATCTCCGCAG
*
18780 GGTTACATTCCTAGCCCGCCA
1 GGTTACATGCCTAGCCCGCCA
18801 GGTTACATGCCTAGCCCGCCA
1 GGTTACATGCCTAGCCCGCCA
18822 GGTTACATGCCTAGCCC
1 GGTTACATGCCTAGCCC
18839 ACAGGGTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.19, C:0.37, G:0.22, T:0.22
Consensus pattern (21 bp):
GGTTACATGCCTAGCCCGCCA
Found at i:19428 original size:33 final size:34
Alignment explanation
Indices: 19369--19465 Score: 124
Period size: 33 Copynumber: 2.9 Consensus size: 34
19359 AAATGTTTTT
*
19369 AAAATACAAATTATATTATTCGAAATTTAAAATA
1 AAAATAAAAATTATATTATTCGAAATTTAAAATA
* * * *
19403 AAAATAAAAATAACATTATTC-AAATTTAAATTT
1 AAAATAAAAATTATATTATTCGAAATTTAAAATA
* *
19436 AAAATATAAATTATAGTATTCGAAATTTAA
1 AAAATAAAAATTATATTATTCGAAATTTAA
19466 CATTAAATTT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
33 27 0.51
34 26 0.49
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (34 bp):
AAAATAAAAATTATATTATTCGAAATTTAAAATA
Found at i:19472 original size:34 final size:33
Alignment explanation
Indices: 19367--19472 Score: 124
Period size: 34 Copynumber: 3.2 Consensus size: 33
19357 ATAAATGTTT
*
19367 TTAAAATACAAATTATATTATTCGAAATTTAAAA
1 TTAAAATAAAAATTATATTATTCGAAATTT-AAA
* * *
19401 TAAAAATAAAAATAACATTATTC-AAATTTAAA
1 TTAAAATAAAAATTATATTATTCGAAATTTAAA
* *
19433 TTTAAAATATAAATTATAGTATTCGAAATTTAACA
1 -TTAAAATAAAAATTATATTATTCGAAATTTAA-A
19468 TTAAA
1 TTAAA
19473 TTTCAACTTA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
32 3 0.05
33 24 0.40
34 32 0.53
35 1 0.02
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.37
Consensus pattern (33 bp):
TTAAAATAAAAATTATATTATTCGAAATTTAAA
Found at i:19600 original size:14 final size:14
Alignment explanation
Indices: 19581--19610 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
19571 TTTTATTATT
*
19581 AACATATATATTAA
1 AACATATACATTAA
19595 AACATATACATTAA
1 AACATATACATTAA
19609 AA
1 AA
19611 TCAACTTATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.30
Consensus pattern (14 bp):
AACATATACATTAA
Found at i:20098 original size:128 final size:128
Alignment explanation
Indices: 19870--20499 Score: 1228
Period size: 128 Copynumber: 4.9 Consensus size: 128
19860 TTACCTGATT
19870 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
19935 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATATG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
19998 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
20063 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
*
20126 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTCACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
20191 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
20254 TACTGATATATCTAGTGT-CCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
20318 TGACGAAATAATGGAAGGCGCG-CCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
20380 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
20445 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAA
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAA
20500 CCGATTATAG
Statistics
Matches: 497, Mismatches: 3, Indels: 4
0.99 0.01 0.01
Matches are distributed among these distances:
126 58 0.12
127 135 0.27
128 304 0.61
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.23
Consensus pattern (128 bp):
TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
Found at i:20452 original size:254 final size:256
Alignment explanation
Indices: 19870--20499 Score: 1228
Period size: 254 Copynumber: 2.5 Consensus size: 256
19860 TTACCTGATT
19870 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
*
19935 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATATGTA
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTA
20000 CTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTG
131 CTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTG
20065 ACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
196 ACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
*
20126 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTCACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
20191 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTA
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTA
20256 CTGATATATCTAGTGT-CCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTG
131 CTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTG
20320 ACGAAATAATGGAAGGCGCG-CCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
196 ACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
20380 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
1 TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
20445 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAA
66 TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAA
20500 CCGATTATAG
Statistics
Matches: 371, Mismatches: 3, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
254 159 0.43
255 68 0.18
256 144 0.39
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.23
Consensus pattern (256 bp):
TACTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTC
TGACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTA
CTGATATATCTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTG
ACGAAATAATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGG
Found at i:20580 original size:8 final size:8
Alignment explanation
Indices: 20567--20607 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
20557 TCACAATCTT
20567 TCAAATTC
1 TCAAATTC
20575 TCAAATTC
1 TCAAATTC
* *
20583 CCAAACTC
1 TCAAATTC
20591 T-AAATTC
1 TCAAATTC
20598 TCAAATTC
1 TCAAATTC
20606 TC
1 TC
20608 TGAAAATGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (8 bp):
TCAAATTC
Found at i:25322 original size:19 final size:19
Alignment explanation
Indices: 25298--25334 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
25288 GGTCCATGTA
25298 TTATTTTTAATTTATTTCT
1 TTATTTTTAATTTATTTCT
*
25317 TTATTTTTAATTTTTTTC
1 TTATTTTTAATTTATTTC
25335 CTTTTTTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (19 bp):
TTATTTTTAATTTATTTCT
Found at i:27282 original size:27 final size:22
Alignment explanation
Indices: 27229--27273 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
27219 AGATTAAGAG
*
27229 AATACTTTAGTTAGGTGAAATT
1 AATACTTCAGTTAGGTGAAATT
27251 AATACTTCAGTTAGGTGAAATT
1 AATACTTCAGTTAGGTGAAATT
27273 A
1 A
27274 TAAAAATACC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (22 bp):
AATACTTCAGTTAGGTGAAATT
Found at i:29891 original size:17 final size:17
Alignment explanation
Indices: 29869--29909 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
29859 CCATGTATTA
29869 TTTTTAATTTATTTC-T
1 TTTTTAATTTATTTCAT
*
29885 CTTTTTAATTTTTTTCAT
1 -TTTTTAATTTATTTCAT
29903 TTTTTAA
1 TTTTTAA
29910 GATATGCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 21 0.95
18 1 0.05
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTTAATTTATTTCAT
Found at i:31775 original size:22 final size:22
Alignment explanation
Indices: 31749--31793 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
31739 AGATTAAGAG
31749 AATACTTCAGTTAGGTGAAATT
1 AATACTTCAGTTAGGTGAAATT
31771 AATACTTCAGTTAGGTGAAATT
1 AATACTTCAGTTAGGTGAAATT
31793 A
1 A
31794 TAAAAATACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (22 bp):
AATACTTCAGTTAGGTGAAATT
Found at i:33429 original size:24 final size:24
Alignment explanation
Indices: 33402--33464 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
33392 ATTTGAATTA
*
33402 TGTTATGATACCTGAAATGGATTC
1 TGTTATGATATCTGAAATGGATTC
* ** *
33426 TGTTCTGATATCTGATCTGGATTT
1 TGTTATGATATCTGAAATGGATTC
33450 TGTTATGATATCTGA
1 TGTTATGATATCTGA
33465 CCTGAATTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.24, C:0.11, G:0.21, T:0.44
Consensus pattern (24 bp):
TGTTATGATATCTGAAATGGATTC
Found at i:33482 original size:24 final size:24
Alignment explanation
Indices: 33395--33482 Score: 59
Period size: 24 Copynumber: 3.7 Consensus size: 24
33385 TGTTCCGATT
* * **
33395 TGAATTATGTTATGATACCTGAAA
1 TGAATTATATTATGATATCTGACC
* * * * *
33419 TGGATTCTGTTCTGATATCTGATC
1 TGAATTATATTATGATATCTGACC
* * *
33443 TGGATTTTGTTATGATATCTGACC
1 TGAATTATATTATGATATCTGACC
*
33467 TGAATTATATTTTGAT
1 TGAATTATATTATGAT
33483 TTTTGATATA
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.26, C:0.10, G:0.18, T:0.45
Consensus pattern (24 bp):
TGAATTATATTATGATATCTGACC
Found at i:33813 original size:157 final size:155
Alignment explanation
Indices: 33509--33815 Score: 501
Period size: 157 Copynumber: 2.0 Consensus size: 155
33499 TACGGATGGA
*
33509 AAATGTTTTATTTGGGGGTATTGTTGGAGGAATAATACTTGTAGGCTCCTCGACTTTGTGCTCAG
1 AAATGTTTTATTTGGGGGTATTGTTGGAGGAATAATACTTGCAGGCTCCTCGACTTTGTGCTCAG
* *
33574 GGCCTTACTGGATGTGAGAGTGGGTGTATGGTTATGGGGAACCTACACATTATGACGTGTTTGGT
66 GGCCTTACTCGATGTGAGAGTGGGTGTATGGTTATGGGGAACCTACACATTATGACGTGTTTGGC
33639 TGGAGGGATTACTATGGTTTTTGAT
131 TGGAGGGATTACTATGGTTTTTGAT
*
33664 AAATGTTTTATTTGAGGGGCTATTGTTGGAGGAAGT-ATACTTGCAGGCTCCTCGGCTTTGTGCT
1 AAATGTTTTATTTG-GGGG-TATTGTTGGAGGAA-TAATACTTGCAGGCTCCTCGACTTTGTGCT
* * *
33728 CAGGGCCTTACTCGATGTGATAGTGGGTGTATGGTTCTGGGGAACCTACACATTATGATGTG-TT
63 CAGGGCCTTACTCGATGTGAGAGTGGGTGTATGGTTATGGGGAACCTACACATTATGACGTGTTT
33792 GAGCTGGAGGGATTACTATGGTTT
128 G-GCTGGAGGGATTACTATGGTTT
33816 CTGAATTTTA
Statistics
Matches: 141, Mismatches: 7, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
155 14 0.10
156 7 0.05
157 119 0.84
158 1 0.01
ACGTcount: A:0.20, C:0.12, G:0.32, T:0.36
Consensus pattern (155 bp):
AAATGTTTTATTTGGGGGTATTGTTGGAGGAATAATACTTGCAGGCTCCTCGACTTTGTGCTCAG
GGCCTTACTCGATGTGAGAGTGGGTGTATGGTTATGGGGAACCTACACATTATGACGTGTTTGGC
TGGAGGGATTACTATGGTTTTTGAT
Found at i:37958 original size:24 final size:25
Alignment explanation
Indices: 37931--37998 Score: 104
Period size: 24 Copynumber: 2.8 Consensus size: 25
37921 TCCGATTTGA
*
37931 ATTCTGTTATGATACCTGACA-TGG
1 ATTCTGTTATGATATCTGACACTGG
37955 ATTCTGTTATGATATCTGA-ACTGG
1 ATTCTGTTATGATATCTGACACTGG
*
37979 ATTTTGTTATGATATCTGAC
1 ATTCTGTTATGATATCTGAC
37999 CTAAATTATG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
23 1 0.03
24 39 0.98
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (25 bp):
ATTCTGTTATGATATCTGACACTGG
Found at i:38010 original size:24 final size:24
Alignment explanation
Indices: 37928--38015 Score: 95
Period size: 24 Copynumber: 3.7 Consensus size: 24
37918 TGTTCCGATT
* *
37928 TGAATTCTGTTATGATACCTGACA
1 TGAATTCTGTTATGATATCTGACC
* *
37952 TGGATTCTGTTATGATATCTGAAC
1 TGAATTCTGTTATGATATCTGACC
* *
37976 TGGATTTTGTTATGATATCTGACC
1 TGAATTCTGTTATGATATCTGACC
* * *
38000 TAAATTATGTTTTGAT
1 TGAATTCTGTTATGAT
38016 TTTTGATATA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.26, C:0.11, G:0.18, T:0.44
Consensus pattern (24 bp):
TGAATTCTGTTATGATATCTGACC
Found at i:39834 original size:17 final size:17
Alignment explanation
Indices: 39794--39828 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
39784 AGACTGATCA
39794 AAGTCAATGATTTGGTC
1 AAGTCAATGATTTGGTC
39811 AAGTCAATGATTTGGTC
1 AAGTCAATGATTTGGTC
39828 A
1 A
39829 GCTCAACGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.34
Consensus pattern (17 bp):
AAGTCAATGATTTGGTC
Found at i:41933 original size:30 final size:31
Alignment explanation
Indices: 41862--41937 Score: 84
Period size: 32 Copynumber: 2.5 Consensus size: 31
41852 TTGGGGCCCG
* *
41862 AGAGCCTACCCAAGAAAGTTATTTGGGGTCAT
1 AGAGCCTACCCAAGAAAG-TATTCGGGATCAT
* *
41894 GGGGCCTACCCAAGAAAG-ATCTCGGGATC-T
1 AGAGCCTACCCAAGAAAGTAT-TCGGGATCAT
41924 AGAGCCTACCCAAG
1 AGAGCCTACCCAAG
41938 GGTCACCTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
30 15 0.41
31 6 0.16
32 16 0.43
ACGTcount: A:0.30, C:0.25, G:0.26, T:0.18
Consensus pattern (31 bp):
AGAGCCTACCCAAGAAAGTATTCGGGATCAT
Found at i:42857 original size:57 final size:57
Alignment explanation
Indices: 42769--42896 Score: 229
Period size: 57 Copynumber: 2.2 Consensus size: 57
42759 TCAACAATAA
*
42769 GAGGTATTCAAGATTATGAATTAAATTATTAGGATTTTAAGTCCAATTGAACCAAAT
1 GAGGTATTCAGGATTATGAATTAAATTATTAGGATTTTAAGTCCAATTGAACCAAAT
*
42826 GAGGTATTCAGGATTATGAATTGAATTATTAGGATTTTAAGTCCAATTGAACCAAAT
1 GAGGTATTCAGGATTATGAATTAAATTATTAGGATTTTAAGTCCAATTGAACCAAAT
*
42883 GAGGTATTAAGGAT
1 GAGGTATTCAGGAT
42897 CTTTTGCATA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 68 1.00
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (57 bp):
GAGGTATTCAGGATTATGAATTAAATTATTAGGATTTTAAGTCCAATTGAACCAAAT
Found at i:43567 original size:27 final size:28
Alignment explanation
Indices: 43518--43582 Score: 87
Period size: 27 Copynumber: 2.3 Consensus size: 28
43508 AGGGTTTAGA
* * *
43518 GGTACTTTAGGTCATTTTTCACTTCAGG
1 GGTATTTTAGGTCATTTTACACTTCAAG
43546 GGTATTTTA-GTCATTTTACACTTCAAG
1 GGTATTTTAGGTCATTTTACACTTCAAG
43573 GGTAGTTTTA
1 GGTA-TTTTA
43583 TAATTCCAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 20 0.61
28 13 0.39
ACGTcount: A:0.22, C:0.14, G:0.20, T:0.45
Consensus pattern (28 bp):
GGTATTTTAGGTCATTTTACACTTCAAG
Found at i:44406 original size:17 final size:18
Alignment explanation
Indices: 44374--44407 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
44364 CGAATTTACA
*
44374 TTAGAAACTGAACTTAAT
1 TTAGAAACTCAACTTAAT
44392 TTAGAAAC-CAACTTAA
1 TTAGAAACTCAACTTAA
44408 ATCCGAAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.29
Consensus pattern (18 bp):
TTAGAAACTCAACTTAAT
Found at i:47106 original size:20 final size:20
Alignment explanation
Indices: 47076--47113 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
47066 CAGTAAGAAA
47076 AAAATAAAAAAAGACAAGAGC
1 AAAATAAAAAAAGA-AAGAGC
47097 AAAA-AAAAAAAGAAAGA
1 AAAATAAAAAAAGAAAGA
47114 AAAAGATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.79, C:0.05, G:0.13, T:0.03
Consensus pattern (20 bp):
AAAATAAAAAAAGAAAGAGC
Found at i:49124 original size:78 final size:80
Alignment explanation
Indices: 49033--49379 Score: 302
Period size: 78 Copynumber: 4.4 Consensus size: 80
49023 ATCATTTCGT
* * * * * *
49033 TCGATTCTATCACAAAAGAG-TGGATCAACCTTTCTGA-AGAAGAAATTCATAATGAGAAAAACT
1 TCGAGTCTATCACAAAAGAGTTGGATCAACATTTCCGATAAAACAAGTTCATAATGAGAAAAACT
*
49096 TATTCACCATTTTGC
66 TGTTCACCATTTTGC
* ** *
49111 TCGAGTCTATCACAGAAGGAGTTGGATCAGTATTTCCGATAAAACAAGTTCATAATGAAAAAAAC
1 TCGAGTCTATCACA-AAAGAGTTGGATCAACATTTCCGATAAAACAAGTTCATAATGAGAAAAAC
*
49176 TTGTTCACTATTTTGC
65 TTGTTCACCATTTTGC
* * * * * *
49192 TCTAGTCCATCACAAAAAGAGTTGGATCAACAATTCTGAT-AAACAGGTTCATAATGAGAAGAAC
1 TCGAGTCTATCAC-AAAAGAGTTGGATCAACATTTCCGATAAAACAAGTTCATAATGAGAAAAAC
*
49256 TTGTTCAACC--CTTGC
65 TTGTTC-ACCATTTTGC
* * * * * **
49271 TCGATTC-ATCACAAAATGAGATGGATCAATATTTCC-AAAAAAGAAGTTCATAATGAGATGAAC
1 TCGAGTCTATCACAAAA-GAGTTGGATCAACATTTCCGATAAAACAAGTTCATAATGAGAAAAAC
49334 TTGTTCAACC--TTTGC
65 TTGTTC-ACCATTTTGC
* * *
49349 T--TGTCCATCACATAAAGAGTTGGATTAACAT
1 TCGAGTCTATCACA-AAAGAGTTGGATCAACAT
49380 CACGCTTGAT
Statistics
Matches: 220, Mismatches: 40, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
76 2 0.01
77 23 0.10
78 72 0.33
79 14 0.06
80 40 0.18
81 68 0.31
82 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (80 bp):
TCGAGTCTATCACAAAAGAGTTGGATCAACATTTCCGATAAAACAAGTTCATAATGAGAAAAACT
TGTTCACCATTTTGC
Found at i:49174 original size:81 final size:80
Alignment explanation
Indices: 49078--49373 Score: 293
Period size: 81 Copynumber: 3.7 Consensus size: 80
49068 GAAGAAGAAA
* * * *
49078 TTCATAATGAGAAAAACTTATTCACCATTTTGCTCGAGTCTATCACAGAAGGAGTTGGATCAGTA
1 TTCATAATGAGAAAAACTTGTTCACCATTTTGCTCGAGTC-ATCACAAAAAGAGTTGGATCAATA
49143 TTTCCGATAAAACAAG
65 TTTCCGATAAAACAAG
* * * *
49159 TTCATAATGAAAAAAACTTGTTCACTATTTTGCTCTAGTCCATCACAAAAAGAGTTGGATCAACA
1 TTCATAATGAGAAAAACTTGTTCACCATTTTGCTCGAGT-CATCACAAAAAGAGTTGGATCAATA
* * *
49224 ATTCTGAT-AAACAGG
65 TTTCCGATAAAACAAG
* * * * *
49239 TTCATAATGAGAAGAACTTGTTCAACC--CTTGCTCGATTCATCACAAAATGAGATGGATCAATA
1 TTCATAATGAGAAAAACTTGTTC-ACCATTTTGCTCGAGTCATCACAAAAAGAGTTGGATCAATA
* *
49302 TTTCC-AAAAAAGAAG
65 TTTCCGATAAAACAAG
** * *
49317 TTCATAATGAGATGAACTTGTTCAACC--TTTGCT--TGTCCATCACATAAAGAGTTGGAT
1 TTCATAATGAGAAAAACTTGTTC-ACCATTTTGCTCGAGT-CATCACAAAAAGAGTTGGAT
49374 TAACATCACG
Statistics
Matches: 179, Mismatches: 32, Indels: 12
0.80 0.14 0.05
Matches are distributed among these distances:
76 1 0.01
77 18 0.10
78 61 0.34
79 8 0.04
80 27 0.15
81 63 0.35
82 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (80 bp):
TTCATAATGAGAAAAACTTGTTCACCATTTTGCTCGAGTCATCACAAAAAGAGTTGGATCAATAT
TTCCGATAAAACAAG
Found at i:55579 original size:2 final size:2
Alignment explanation
Indices: 55572--55596 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
55562 CATATGATAG
55572 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
55597 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:55992 original size:39 final size:39
Alignment explanation
Indices: 55932--56010 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 39
55922 TGTACACCCA
* *
55932 GTAAGGGCTTACCTTGTGCACAAAGCAGAGGAGTCTGTG
1 GTAAGGGCTTACCTTGCGCACAAAGCAAAGGAGTCTGTG
* *
55971 GTAAGGTCTTATCC-TGCGCACAAAGCAAAGGAGTTTGTG
1 GTAAGGGCTTA-CCTTGCGCACAAAGCAAAGGAGTCTGTG
56010 G
1 G
56011 AAAGCGGTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.94
40 2 0.06
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.24
Consensus pattern (39 bp):
GTAAGGGCTTACCTTGCGCACAAAGCAAAGGAGTCTGTG
Found at i:56639 original size:21 final size:21
Alignment explanation
Indices: 56615--56656 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
56605 TTTAATAATC
*
56615 AAATCCTAAAAAAATTAAGCA
1 AAATCCTAAAAAAACTAAGCA
* *
56636 AAATGCTAAAATAACTAAGCA
1 AAATCCTAAAAAAACTAAGCA
56657 TTTTCGAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.14, G:0.07, T:0.19
Consensus pattern (21 bp):
AAATCCTAAAAAAACTAAGCA
Found at i:60530 original size:30 final size:30
Alignment explanation
Indices: 60494--60558 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
60484 GAATCTGGAT
* * *
60494 TCAAATTCAATCAAAACTTCACTTTGGTCC
1 TCAAATTAAATCAAAACTTCAATTTAGTCC
* * *
60524 TCAAATTAAATTACAATTTCAATTTAGTCC
1 TCAAATTAAATCAAAACTTCAATTTAGTCC
60554 TCAAA
1 TCAAA
60559 AAAATTTGAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.35
Consensus pattern (30 bp):
TCAAATTAAATCAAAACTTCAATTTAGTCC
Found at i:62624 original size:15 final size:15
Alignment explanation
Indices: 62586--62627 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
62576 TAATTTTGAG
62586 AATT-TTAAAAAATA
1 AATTATTAAAAAATA
** *
62600 AAAAAATAAAAAATA
1 AATTATTAAAAAATA
62615 AATTATTAAAAAA
1 AATTATTAAAAAA
62628 ACCCAACAAC
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
14 2 0.10
15 19 0.90
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AATTATTAAAAAATA
Found at i:67330 original size:31 final size:31
Alignment explanation
Indices: 67261--67336 Score: 107
Period size: 31 Copynumber: 2.5 Consensus size: 31
67251 TTGGGGTCTG
* *
67261 AGAGCCTACCCGAGAAAGTCCTCGGGGCATC
1 AGAGCCTACCCAAGAAAGTCCTCGGGACATC
* * *
67292 GGGGCCTACCCAAGAAAGTCCTCGGGACCTC
1 AGAGCCTACCCAAGAAAGTCCTCGGGACATC
67323 AGAGCCTACCCAAG
1 AGAGCCTACCCAAG
67337 GGTCGTCTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.26, C:0.34, G:0.28, T:0.12
Consensus pattern (31 bp):
AGAGCCTACCCAAGAAAGTCCTCGGGACATC
Found at i:72364 original size:43 final size:42
Alignment explanation
Indices: 72294--72414 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 42
72284 GCTAAAGTTC
72294 GCGGCGTTTGTTAACGAAAAACGCCGCAATAGGTGACGATATATA
1 GCGGCGTTTGTT-A--AAAAACGCCGCAATAGGTGACGATATATA
** * *
72339 GCGGCGTTTGTTGAAAAAACGCCGCAATAGGTGTTGTTATTTA
1 GCGGCGTTTGTT-AAAAAACGCCGCAATAGGTGACGATATATA
*
72382 GCGGCGTTTGTCTTAAAAACGCCGCAATAGGTG
1 GCGGCGTTTGT-TAAAAAACGCCGCAATAGGTG
72415 TTGTCGTTTA
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
43 55 0.80
44 1 0.01
45 13 0.19
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (42 bp):
GCGGCGTTTGTTAAAAAACGCCGCAATAGGTGACGATATATA
Found at i:72415 original size:43 final size:43
Alignment explanation
Indices: 72310--72627 Score: 221
Period size: 43 Copynumber: 7.3 Consensus size: 43
72300 TTTGTTAACG
** * *
72310 AAAAACGCCGCAATAGGTGACGATATATAGCGGCGTTTGT-TGA
1 AAAAACGCCGCAATAGGTGTTGTTATTTAGCGGCGTTTGTCT-A
*
72353 AAAAACGCCGCAATAGGTGTTGTTATTTAGCGGCGTTTGTCTT
1 AAAAACGCCGCAATAGGTGTTGTTATTTAGCGGCGTTTGTCTA
** * **
72396 AAAAACGCCGCAATAGGTGTTGTCGTTTAGCGGCATTT-TCCC
1 AAAAACGCCGCAATAGGTGTTGTTATTTAGCGGCGTTTGTCTA
** * * * * * * * *
72438 CCAAACGTCGCAGTAGTTATCGTTGTTTAGCGGCGTTTTTCCCA
1 AAAAACGCCGCAATAGGTGTTGTTATTTAGCGGCGTTTGT-CTA
* * *
72482 AAAAATGCCGCAATAGGTGTTGTTGTTTAGCGGCGTTTTTC-A
1 AAAAACGCCGCAATAGGTGTTGTTATTTAGCGGCGTTTGTCTA
* * * ** * * *
72524 AACAAGCGCCGCAATAAGCGTTGAGATTTAGCGGCGTTTTTATC
1 AA-AAACGCCGCAATAGGTGTTGTTATTTAGCGGCGTTTGTCTA
* * * * * *
72568 GAAAACGCCGCTACATGT-TATGATATTTAGCGGCGTTTGTGGTA
1 AAAAACGCCGCAATAGGTGT-TGTTATTTAGCGGCGTTTGT-CTA
72612 AAAAACGCCGCTAATA
1 AAAAACGCCGC-AATA
72628 ACTATGTATA
Statistics
Matches: 217, Mismatches: 50, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
42 35 0.16
43 133 0.61
44 47 0.22
45 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
AAAAACGCCGCAATAGGTGTTGTTATTTAGCGGCGTTTGTCTA
Found at i:74405 original size:111 final size:111
Alignment explanation
Indices: 74211--74434 Score: 448
Period size: 111 Copynumber: 2.0 Consensus size: 111
74201 CGAGCATTTT
74211 AACTGTTATTTCTTCTTCGTTTTGAATATACTCGATCAGTATCAATATTCTTTACTTGAAACAAG
1 AACTGTTATTTCTTCTTCGTTTTGAATATACTCGATCAGTATCAATATTCTTTACTTGAAACAAG
74276 GTACATAGACAAATGTTGTTAGATCTAATTAGTTTAAATATATTGC
66 GTACATAGACAAATGTTGTTAGATCTAATTAGTTTAAATATATTGC
74322 AACTGTTATTTCTTCTTCGTTTTGAATATACTCGATCAGTATCAATATTCTTTACTTGAAACAAG
1 AACTGTTATTTCTTCTTCGTTTTGAATATACTCGATCAGTATCAATATTCTTTACTTGAAACAAG
74387 GTACATAGACAAATGTTGTTAGATCTAATTAGTTTAAATATATTGC
66 GTACATAGACAAATGTTGTTAGATCTAATTAGTTTAAATATATTGC
74433 AA
1 AA
74435 TGGCTTTACA
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 113 1.00
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.41
Consensus pattern (111 bp):
AACTGTTATTTCTTCTTCGTTTTGAATATACTCGATCAGTATCAATATTCTTTACTTGAAACAAG
GTACATAGACAAATGTTGTTAGATCTAATTAGTTTAAATATATTGC
Found at i:74475 original size:22 final size:22
Alignment explanation
Indices: 74447--74493 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
74437 GCTTTACAAA
*
74447 AAGTAAACATTCAAGGATCATG
1 AAGTAAACATTCAAGGATCAAG
74469 AAGTAAACATTCAAGGATCAAG
1 AAGTAAACATTCAAGGATCAAG
74491 AAG
1 AAG
74494 GCTTTACAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (22 bp):
AAGTAAACATTCAAGGATCAAG
Found at i:77381 original size:41 final size:41
Alignment explanation
Indices: 77316--77509 Score: 169
Period size: 41 Copynumber: 4.7 Consensus size: 41
77306 TATCCAAAAC
* * * * * *
77316 TTGCAGCGTTTGTATTTAAAACGCCACTACTTCACTAACTTA
1 TTGCGGCGTTTGT-TTAAAAACGCCGCTAATTCACTGATTTA
** * *
77358 TTGCGGCGTTTGTTTAAAAACGCCGCTAATGGACCGATTTC
1 TTGCGGCGTTTGTTTAAAAACGCCGCTAATTCACTGATTTA
* * *
77399 TTGCTGCGTTTTTTTAAAAACGCCGCTAATATTACT-A-TT-
1 TTGCGGCGTTTGTTTAAAAACGCCGCTAAT-TCACTGATTTA
* *
77438 TTGTGGCGTTTGTATTTAAAAACGCTGCTAATTCACTGATTTA
1 TTGCGGCGTTTG--TTTAAAAACGCCGCTAATTCACTGATTTA
* **
77481 TTGCGGCATTTGTAGAAAAACGCCGCTAA
1 TTGCGGCGTTTGTTTAAAAACGCCGCTAA
77510 AGTACTACGT
Statistics
Matches: 121, Mismatches: 25, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
39 9 0.07
40 6 0.05
41 80 0.66
42 16 0.13
43 10 0.08
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (41 bp):
TTGCGGCGTTTGTTTAAAAACGCCGCTAATTCACTGATTTA
Found at i:77695 original size:41 final size:41
Alignment explanation
Indices: 77650--77800 Score: 139
Period size: 42 Copynumber: 3.6 Consensus size: 41
77640 CTATTGCGAT
* * *
77650 GTTTGTATAAAAACACTGCTAAAGTACTAATCTATCGCGGC
1 GTTTGTATAAAAACGCCGCTAAAGTACTAATCTATAGCGGC
* * *
77691 GTTTGTTAGAAAAACGCCACTATAA--AC-GATCCCTATTA-CGGC
1 GTTTG-TATAAAAACGCCGCTA-AAGTACTAAT--CTA-TAGCGGC
* *
77733 ATTTATATAAAAACGCCGCTAAAGTACTAATCTATAGCGGC
1 GTTTGTATAAAAACGCCGCTAAAGTACTAATCTATAGCGGC
*
77774 GTTTGTTTAAGAAACGCCGCTAAAGTA
1 GTTTGTATAA-AAACGCCGCTAAAGTA
77801 TCGTTTTGTG
Statistics
Matches: 86, Mismatches: 14, Indels: 19
0.72 0.12 0.16
Matches are distributed among these distances:
40 6 0.07
41 35 0.41
42 40 0.47
43 5 0.06
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (41 bp):
GTTTGTATAAAAACGCCGCTAAAGTACTAATCTATAGCGGC
Found at i:77726 original size:83 final size:83
Alignment explanation
Indices: 77554--77780 Score: 276
Period size: 83 Copynumber: 2.7 Consensus size: 83
77544 GCCGATAAAG
* * * * * * *
77554 AACCCTATTACGGCGTTTATATAAAAACGCTACTAAAGTACT-CTTTATTGCGACGTTTGTTGGA
1 AACCCTATTACGACGTTTATATAAAAACGCTGCTAAAGTACTAATCTATAGCGGCGTTTGTTAGA
* *
77618 AAAATGCCACTATGAACA
66 AAAACGCCACTATAAACA
* * * * *
77636 AACCCTATTGCGATGTTTGTATAAAAACACTGCTAAAGTACTAATCTATCGCGGCGTTTGTTAGA
1 AACCCTATTACGACGTTTATATAAAAACGCTGCTAAAGTACTAATCTATAGCGGCGTTTGTTAGA
*
77701 AAAACGCCACTATAAACG
66 AAAACGCCACTATAAACA
* * * *
77719 ATCCCTATTACGGCATTTATATAAAAACGCCGCTAAAGTACTAATCTATAGCGGCGTTTGTT
1 AACCCTATTACGACGTTTATATAAAAACGCTGCTAAAGTACTAATCTATAGCGGCGTTTGTT
77781 TAAGAAACGC
Statistics
Matches: 121, Mismatches: 23, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
82 36 0.30
83 85 0.70
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (83 bp):
AACCCTATTACGACGTTTATATAAAAACGCTGCTAAAGTACTAATCTATAGCGGCGTTTGTTAGA
AAAACGCCACTATAAACA
Found at i:81040 original size:80 final size:80
Alignment explanation
Indices: 80899--81051 Score: 243
Period size: 80 Copynumber: 1.9 Consensus size: 80
80889 TGTATTGCAG
*
80899 TTATCTTCTTCCAATTATCTTCTTCATCTTCTTTTATATCTCCCACTGACCTTCTTGTCCATCAT
1 TTATCTTCTTCCAATTATCATCTTCATCTTCTTTTATATCTCCCACTGACCTTCTTGTCCATCAT
80964 CGTCAATAATTGTAT
66 CGTCAATAATTGTAT
* * ** * *
80979 TTATCTTCTTCCAATTATCATCTTCATCTTCTTTTATGTCTTCCACTGTGCTTGTTTTCCATCAT
1 TTATCTTCTTCCAATTATCATCTTCATCTTCTTTTATATCTCCCACTGACCTTCTTGTCCATCAT
81044 CGTCAATA
66 CGTCAATA
81052 CCACTAGCCG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 66 1.00
ACGTcount: A:0.19, C:0.27, G:0.06, T:0.48
Consensus pattern (80 bp):
TTATCTTCTTCCAATTATCATCTTCATCTTCTTTTATATCTCCCACTGACCTTCTTGTCCATCAT
CGTCAATAATTGTAT
Found at i:82651 original size:228 final size:228
Alignment explanation
Indices: 82331--82811 Score: 690
Period size: 228 Copynumber: 2.1 Consensus size: 228
82321 CAATTCAGCA
* *
82331 ATATTTATG-CTTCTTTTTCTATTTTAAGTAATGAAAAAAAAAGTAAGTGATTGGATGGAGGGCT
1 ATATTTATGACTTTTTTTTCTATTTTAAGTAATG-AAAAAAAAG--AGTGATTGGATGGAGGACT
* * * * * * **
82395 CAGGAAGATACGAAAAGAAGGTGTTTAATATACAAGTTATATTAGTTCAAGGGTGTTGGATAACT
63 CAGGAAGATACAAAAAAAAGGTGTTTAATATAAAAGCTAGATTAGTCCAAGGGTGTTCAATAACT
82460 AAGAACACAAGTGGAAGAAGCAAGATTTGGTGCAAAAGTTAAACTTCCGTACAATTGGCCAACCC
128 AAGAACACAAGTGGAAGAAGCAAGATTTGGTGCAAAAGTTAAACTT-CGTACAATTGGCCAACCC
82525 ATTTTTTA-AATATTGCCGCAAATTAAACATCATTCGT
192 A-TTTTTACAATATTGCCGCAAATTAAACATCATTCGT
82562 ATATTTATGACCTTTTTTATTCTATTTTAAGTAATG-AAAAAAAG-G-GATTGG-TCGGAGGACT
1 ATATTTATGA-CTTTTTT-TTCTATTTTAAGTAATGAAAAAAAAGAGTGATTGGAT-GGAGGACT
*
82623 TAGGAAGATACAAAAATAAAGG-GTTTAATATAAAAGCTAGATTAGTCCAAGGGTGTTCAATAAC
63 CAGGAAGATACAAAAA-AAAGGTGTTTAATATAAAAGCTAGATTAGTCCAAGGGTGTTCAATAAC
* *
82687 TAAGAACACAAGTGGAAGAAGCAGGATTTGGTGCAAAAGTTGAACTTCGTACAATTGGCCAACCC
127 TAAGAACACAAGTGGAAGAAGCAAGATTTGGTGCAAAAGTTAAACTTCGTACAATTGGCCAACCC
* *
82752 ATTTTTACAATATTGCCGCAAATTAATCATCATTGGT
192 ATTTTTACAATATTGCCGCAAATTAAACATCATTCGT
82789 ATATTTATGA-TTTTTTTTCTATT
1 ATATTTATGACTTTTTTTTCTATT
82812 CTTGTCACAC
Statistics
Matches: 229, Mismatches: 15, Indels: 19
0.87 0.06 0.07
Matches are distributed among these distances:
224 7 0.03
225 6 0.03
226 6 0.03
227 57 0.25
228 108 0.47
229 5 0.02
231 9 0.04
232 8 0.03
233 6 0.03
234 17 0.07
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (228 bp):
ATATTTATGACTTTTTTTTCTATTTTAAGTAATGAAAAAAAAGAGTGATTGGATGGAGGACTCAG
GAAGATACAAAAAAAAGGTGTTTAATATAAAAGCTAGATTAGTCCAAGGGTGTTCAATAACTAAG
AACACAAGTGGAAGAAGCAAGATTTGGTGCAAAAGTTAAACTTCGTACAATTGGCCAACCCATTT
TTACAATATTGCCGCAAATTAAACATCATTCGT
Found at i:83789 original size:3 final size:3
Alignment explanation
Indices: 83781--83809 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
83771 TAAATATGGG
83781 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
83810 CATATTAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:84260 original size:39 final size:39
Alignment explanation
Indices: 84206--84305 Score: 168
Period size: 39 Copynumber: 2.6 Consensus size: 39
84196 TTTATGACTT
84206 GTAAGTCCTTACCGCAGGCTCCTC-GACTTTGTGCTCAGG
1 GTAAGTCCTTACCGCAGGCTCCTCAG-CTTTGTGCTCAGG
*
84245 GTAAGTCCTTACCGCAAGCTCCTCAGCTTTGTGCTCAGG
1 GTAAGTCCTTACCGCAGGCTCCTCAGCTTTGTGCTCAGG
84284 GTAAGTCCTTACCGCAGG-TCCT
1 GTAAGTCCTTACCGCAGGCTCCT
84306 TATGCTATGT
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
38 4 0.07
39 53 0.91
40 1 0.02
ACGTcount: A:0.17, C:0.31, G:0.24, T:0.28
Consensus pattern (39 bp):
GTAAGTCCTTACCGCAGGCTCCTCAGCTTTGTGCTCAGG
Found at i:85289 original size:235 final size:234
Alignment explanation
Indices: 84875--85346 Score: 757
Period size: 235 Copynumber: 2.0 Consensus size: 234
84865 TGGGGTAACA
* * * * **
84875 ATTCTATTTTAACTAATGAAAAAAAACGTAAGGGATTGGATGGAGGGCATAGGAAGATATGGCAA
1 ATTCTATTTTAACTAATGAAAAAAAAAGTAAGAGATTGGACGGAGGGCATAGGAAGATACGAAAA
* *
84940 TAAAGTGTTTAATATAAAAGCAAGATTAGTTCAAGGGTGTTGGATAACTAAGAACACATGTGGAA
66 TAAAGTGTTTAATATAAAAGCAAGATTAGTTCAAGGGTGTTGGATAACTAAGAACACAAGTGCAA
* *
85005 GAAGCAAGACTTGGTGCAAAAGTTGAACTTTCGTACAATTGGACAACCCATTTTT-ACAATATTG
131 GAAACAAGACTTCGTGCAAAAGTTGAACTTTCGTACAATTGGACAACCCATTTTTGA-AATATTG
* *
85069 CCGCAAATTAATCATCATTGGTATATTTATGACCTTTTTT
195 CCGCAAATTAAACATCATTGGTATATTTATGACCTTTTCT
*
85109 ATTCTATTTTAACTAATGAAAAAAAAGAGTAAGAGATTGGACGGAGGGCTTAGGAAGATACGAAA
1 ATTCTATTTTAACTAATGAAAAAAAA-AGTAAGAGATTGGACGGAGGGCATAGGAAGATACGAAA
*
85174 ATAAAGTGTTTAATATAAAAGCTAGATTAGTTCAAGGGTGTTGGATAACTAAGAACACAAGTGCA
65 ATAAAGTGTTTAATATAAAAGCAAGATTAGTTCAAGGGTGTTGGATAACTAAGAACACAAGTGCA
* * * *
85239 ATAAACTAGATTTCGTGCAAAAGTTGAACTTTCGTACAATTGGCCAACCCATTTTTGAAATATTG
130 AGAAACAAGACTTCGTGCAAAAGTTGAACTTTCGTACAATTGGACAACCCATTTTTGAAATATTG
85304 CCGCAAATTAAACATCATTGGTATATTTATGACCTTTTCT
195 CCGCAAATTAAACATCATTGGTATATTTATGACCTTTTCT
85344 ATT
1 ATT
85347 TTTTAAATAT
Statistics
Matches: 218, Mismatches: 18, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
234 26 0.12
235 191 0.88
236 1 0.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (234 bp):
ATTCTATTTTAACTAATGAAAAAAAAAGTAAGAGATTGGACGGAGGGCATAGGAAGATACGAAAA
TAAAGTGTTTAATATAAAAGCAAGATTAGTTCAAGGGTGTTGGATAACTAAGAACACAAGTGCAA
GAAACAAGACTTCGTGCAAAAGTTGAACTTTCGTACAATTGGACAACCCATTTTTGAAATATTGC
CGCAAATTAAACATCATTGGTATATTTATGACCTTTTCT
Found at i:89266 original size:3 final size:3
Alignment explanation
Indices: 89258--89301 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
89248 CTTCTGGTAA
89258 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
89302 AGTGATAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:89777 original size:10 final size:10
Alignment explanation
Indices: 89758--89808 Score: 61
Period size: 10 Copynumber: 5.2 Consensus size: 10
89748 AATTAAAGGG
89758 AAAATA-AAA
1 AAAATATAAA
*
89767 AAAAAATAAA
1 AAAATATAAA
*
89777 AAAATATTAA
1 AAAATATAAA
89787 AAAATATTAAA
1 AAAATA-TAAA
89798 AAAATA-AAA
1 AAAATATAAA
89807 AA
1 AA
89809 TGAATAAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
9 10 0.28
10 17 0.47
11 9 0.25
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (10 bp):
AAAATATAAA
Found at i:89788 original size:18 final size:17
Alignment explanation
Indices: 89763--89809 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
89753 AAGGGAAAAT
89763 AAAA-AAAAAATA-AAA
1 AAAATAAAAAATATAAA
89778 AAATATTAAAAAATATTAAA
1 AAA-A-TAAAAAATA-TAAA
89798 AAAATAAAAAAT
1 AAAATAAAAAAT
89810 GAATAAAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 3 0.11
16 1 0.04
18 16 0.59
19 1 0.04
20 6 0.22
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (17 bp):
AAAATAAAAAATATAAA
Found at i:89790 original size:21 final size:21
Alignment explanation
Indices: 89764--89803 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
89754 AGGGAAAATA
89764 AAAAAAAAATAAAAAAATATT
1 AAAAAAAAATAAAAAAATATT
* *
89785 AAAAAATATTAAAAAAATA
1 AAAAAAAAATAAAAAAATA
89804 AAAAATGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (21 bp):
AAAAAAAAATAAAAAAATATT
Found at i:91018 original size:3 final size:3
Alignment explanation
Indices: 91000--91037 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
90990 GGCCTACAAA
*
91000 AAT AAA AAT AAAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT A
91038 TAAATAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:92105 original size:106 final size:107
Alignment explanation
Indices: 91976--92418 Score: 687
Period size: 106 Copynumber: 4.2 Consensus size: 107
91966 GTATTGTTCC
* * **
91976 GAGTCCAATATCCTCCG-TCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTATTGACA
1 GAGTCCAATATCCTTCGCTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACA
* * * * * *
92040 AACAGCCGTCCTTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
66 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
92082 GAGTCCAATATCTTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACA
1 GAGTCCAATATCCTTCGCTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACA
*
92146 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTCCGTTGTCTG
66 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
92188 GAGTCCAATATCCTTCG-TCGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACA
1 GAGTCCAATATCCTTCGCTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACA
92252 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
92294 GAGTCCAATATCATTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACA
1 GAGTCCAATATCCTTCGCTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACA
92358 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
92400 GAGTCCAATATCCTTCGCT
1 GAGTCCAATATCCTTCGCT
92419 ATAAAATTGG
Statistics
Matches: 311, Mismatches: 23, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
105 1 0.00
106 308 0.99
107 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (107 bp):
GAGTCCAATATCCTTCGCTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACA
ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:92343 original size:212 final size:212
Alignment explanation
Indices: 91976--92628 Score: 919
Period size: 212 Copynumber: 3.2 Consensus size: 212
91966 GTATTGTTCC
** ** *
91976 GAGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTAAAATTGGGAAGTTGTTTATTGACAA
* * * * * *
92041 ACAGCCGTCCTTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCTTTCGCTGTGAA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAGTCCAATATCATTCGCTGTGAA
* *
92106 GTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
131 GTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGT
*
92171 TGAACTTCCGTTGTCTG
196 TGAACTTGCGTTGTCTG
* * *
92188 GAGTCCAATATCCTTCGTCGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTAAAATTGGGAAGTTGTTTATTGACAA
*
92253 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCATTCGCTGTGAA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAGTCCAATATCATTCGCTGTGAA
92318 GTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGT
131 GTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGT
92383 TGAACTTGCGTTGTCTG
196 TGAACTTGCGTTGTCTG
*
92400 GAGTCCAATATCCT---TC---------------GCTATAAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTAAAATTGGGAAGTTGTTTATTGACAA
* *
92447 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCCTTCGCTGTGAA
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAGTCCAATATCATTCGCTGTGAA
* *
92512 GTTGAAATTGGCTCTGCAATTGGGAAGTTATTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGT
131 GTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGT
*
92577 TGAACTTGCGTTGTCTA
196 TGAACTTGCGTTGTCTG
* *
92594 GAGTGGCACGATATCCTCCGTCGTGGAGTTGAAAT
1 GAGT--C-CAATATCCTCCGTCGTGAAGTTGAAAT
92629 CGCGGATGGC
Statistics
Matches: 395, Mismatches: 27, Indels: 37
0.86 0.06 0.08
Matches are distributed among these distances:
194 174 0.44
196 1 0.00
197 8 0.02
200 2 0.01
209 2 0.01
212 208 0.53
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (212 bp):
GAGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTAAAATTGGGAAGTTGTTTATTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAGTCCAATATCATTCGCTGTGAA
GTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGT
TGAACTTGCGTTGTCTG
Found at i:92483 original size:88 final size:88
Alignment explanation
Indices: 92334--92506 Score: 337
Period size: 88 Copynumber: 2.0 Consensus size: 88
92324 ATTGGCTCTG
92334 AAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
1 AAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
92399 GGAGTCCAATATCCTTCGCTATA
66 GGAGTCCAATATCCTTCGCTATA
92422 AAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
1 AAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
*
92487 TGAGTCCAATATCCTTCGCT
66 GGAGTCCAATATCCTTCGCT
92507 GTGAAGTTGA
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.34
Consensus pattern (88 bp):
AAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
GGAGTCCAATATCCTTCGCTATA
Found at i:92555 original size:194 final size:194
Alignment explanation
Indices: 92226--92597 Score: 681
Period size: 194 Copynumber: 1.9 Consensus size: 194
92216 AAATTGGCTC
*
92226 TAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
1 TAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
*
92291 CTGGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGA
66 CTGGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTATTTATTGA
*
92356 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTA
131 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTAGAGTCCAATATCCTTCGCTA
*
92420 TAAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
1 TAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
* * *
92485 CTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGCAATTGGGAAGTTATTTATTGA
66 CTGGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTATTTATTGA
92550 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTAGAGT
131 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTAGAGT
92598 GGCACGATAT
Statistics
Matches: 171, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
194 171 1.00
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (194 bp):
TAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
CTGGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTATTTATTGA
CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTAGAGTCCAATATCCTTCGCTA
Found at i:94147 original size:22 final size:22
Alignment explanation
Indices: 94121--94176 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
94111 TTGTGTTTGG
94121 TCAAAGGTTTGACATTTGATGC
1 TCAAAGGTTTGACATTTGATGC
**
94143 TCAAAGGTTTGGTATTTGATGC
1 TCAAAGGTTTGACATTTGATGC
*
94165 TCAAAGGATTGA
1 TCAAAGGTTTGA
94177 TGGGGTAGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.36
Consensus pattern (22 bp):
TCAAAGGTTTGACATTTGATGC
Found at i:94795 original size:21 final size:20
Alignment explanation
Indices: 94770--94846 Score: 70
Period size: 21 Copynumber: 3.8 Consensus size: 20
94760 TTTGTCCCCT
94770 TTTCTTTTTTGATCTTTGTTC
1 TTTCTTTTTTG-TCTTTGTTC
* * *
94791 TTTCTTTTTTCTTTTTGTTTT
1 TTTCTTTTTTGTCTTTG-TTC
94812 TTTCCTTTTTTGTCTTT-TTC
1 TTT-CTTTTTTGTCTTTGTTC
94832 TTT-TTTCTTT-TCTTT
1 TTTCTTT-TTTGTCTTT
94847 TTTCCTTTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
18 8 0.17
19 3 0.06
20 10 0.21
21 15 0.32
22 11 0.23
ACGTcount: A:0.01, C:0.14, G:0.05, T:0.79
Consensus pattern (20 bp):
TTTCTTTTTTGTCTTTGTTC
Found at i:94801 original size:7 final size:7
Alignment explanation
Indices: 94791--94857 Score: 68
Period size: 7 Copynumber: 9.4 Consensus size: 7
94781 ATCTTTGTTC
94791 TTTCTTT
1 TTTCTTT
94798 TTTCTTT
1 TTTCTTT
94805 TTGT-TTT
1 TT-TCTTT
94812 TTTCCTTT
1 TTT-CTTT
*
94820 TTTGTCTT
1 TTTCT-TT
94828 TTTCTTT
1 TTTCTTT
94835 TTTC--T
1 TTTCTTT
94840 TTTCTTT
1 TTTCTTT
94847 TTTCCTTT
1 TTT-CTTT
94855 TTT
1 TTT
94858 GCTTCTTATT
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
5 5 0.10
6 1 0.02
7 25 0.49
8 20 0.39
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (7 bp):
TTTCTTT
Found at i:94803 original size:44 final size:42
Alignment explanation
Indices: 94755--94855 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 42
94745 TCTTTGCATG
94755 TTCTTTTTGTCCCCTTTT-CTTTTTTGATCTTTGTTCTTTCTT-TT
1 TTCTTTTTGT--CCTTTTCCTTTTTTG-TCTTT-TTCTTTCTTCTT
** *
94799 TTCTTTTTGTTTTTTTCCTTTTTTGTCTTTTTCTTTTTTCTT
1 TTCTTTTTGTCCTTTTCCTTTTTTGTCTTTTTCTTTCTTCTT
94841 TTCTTTTT-TCCTTTT
1 TTCTTTTTGTCCTTTT
94856 TTGCTTCTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
41 13 0.26
42 19 0.38
43 8 0.16
44 10 0.20
ACGTcount: A:0.01, C:0.18, G:0.05, T:0.76
Consensus pattern (42 bp):
TTCTTTTTGTCCTTTTCCTTTTTTGTCTTTTTCTTTCTTCTT
Found at i:94813 original size:8 final size:8
Alignment explanation
Indices: 94791--94857 Score: 57
Period size: 8 Copynumber: 8.2 Consensus size: 8
94781 ATCTTTGTTC
94791 TTTC-TTT
1 TTTCTTTT
94798 TTTCTTTT
1 TTTCTTTT
*
94806 TGT-TTTT
1 TTTCTTTT
*
94813 TTCCTTTT
1 TTTCTTTT
94821 TTGTCTTTT
1 TT-TCTTTT
*
94830 TCTTTTTTCT
1 T-TTCTTT-T
94840 TTTCTTTT
1 TTTCTTTT
*
94848 TTCCTTTT
1 TTTCTTTT
94856 TT
1 TT
94858 GCTTCTTATT
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
7 9 0.19
8 21 0.44
9 15 0.31
10 3 0.06
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (8 bp):
TTTCTTTT
Found at i:94828 original size:35 final size:35
Alignment explanation
Indices: 94784--94864 Score: 103
Period size: 35 Copynumber: 2.3 Consensus size: 35
94774 TTTTTTGATC
*
94784 TTTGTTC-TTTCTTTTTTCTTTTTGTTTTTTTCCTTT
1 TTTGTTCTTTTCTTTTTTC-TTTT-CTTTTTTCCTTT
94820 TTTG-TCTTTTTCTTTTTTCTTTTCTTTTTTCCTTT
1 TTTGTTC-TTTTCTTTTTTCTTTTCTTTTTTCCTTT
94855 TTTGCTTCTT
1 TTTG-TTCTT
94865 ATTGAATATT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
35 17 0.43
36 10 0.25
37 13 0.32
ACGTcount: A:0.00, C:0.16, G:0.05, T:0.79
Consensus pattern (35 bp):
TTTGTTCTTTTCTTTTTTCTTTTCTTTTTTCCTTT
Found at i:94828 original size:42 final size:42
Alignment explanation
Indices: 94769--94848 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
94759 TTTTGTCCCC
94769 TTTTCTTTTTTGATCTTTGTTCTTTCTT-TTTTCTTTTTGTTT
1 TTTTCTTTTTTGATCTTT-TTCTTTCTTCTTTTCTTTTTGTTT
*
94811 TTTTCCTTTTTTG-TCTTTTTCTTTTTTCTTTTCTTTTT
1 TTTT-CTTTTTTGATCTTTTTCTTTCTTCTTTTCTTTTT
94849 TCCTTTTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
41 8 0.23
42 19 0.54
43 8 0.23
ACGTcount: A:0.01, C:0.14, G:0.05, T:0.80
Consensus pattern (42 bp):
TTTTCTTTTTTGATCTTTTTCTTTCTTCTTTTCTTTTTGTTT
Found at i:97884 original size:10 final size:10
Alignment explanation
Indices: 97861--97905 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
97851 AAAGGGAAAA
97861 TAAAAAA-AT
1 TAAAAAATAT
*
97870 AAAAAAATAT
1 TAAAAAATAT
97880 TAAAAAATAT
1 TAAAAAATAT
97890 TAAAAAA-A-
1 TAAAAAATAT
97898 TAAAAAAT
1 TAAAAAAT
97906 GAATAAAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
8 7 0.22
9 7 0.22
10 18 0.56
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (10 bp):
TAAAAAATAT
Found at i:97905 original size:18 final size:18
Alignment explanation
Indices: 97857--97905 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
97847 AATTAAAGGG
97857 AAAATAAAAAA-ATAAAA
1 AAAATAAAAAATATAAAA
*
97874 AAATATTAAAAAATATTAAA
1 AAA-A-TAAAAAATATAAAA
97894 AAAATAAAAAAT
1 AAAATAAAAAAT
97906 GAATAAAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 3 0.11
18 9 0.32
19 8 0.29
20 8 0.29
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAATAAAAAATATAAAA
Found at i:99116 original size:16 final size:16
Alignment explanation
Indices: 99091--99133 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
99081 GGCCTACAAA
99091 AATAAAAATAAAAAAT
1 AATAAAAATAAAAAAT
* *
99107 AATAATAATAATAAAT
1 AATAAAAATAAAAAAT
*
99123 AA-ATAAATAAA
1 AATAAAAATAAA
99134 CAACAATATA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AATAAAAATAAAAAAT
Found at i:99297 original size:20 final size:19
Alignment explanation
Indices: 99264--99302 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
99254 TAAGCCCTTT
*
99264 AGTATCGATTCCAACTCTTG
1 AGTATCGATACCAA-TCTTG
*
99284 AGTATCGGTACCAATCTTG
1 AGTATCGATACCAATCTTG
99303 GGTAAGAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (19 bp):
AGTATCGATACCAATCTTG
Found at i:101255 original size:10 final size:10
Alignment explanation
Indices: 101227--101259 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
101217 TATATTAAGC
101227 ATTATATTTT
1 ATTATATTTT
101237 A-TATATTTT
1 ATTATATTTT
*
101246 ATTTTATTTT
1 ATTATATTTT
101256 ATTA
1 ATTA
101260 CAAATTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
ATTATATTTT
Found at i:103254 original size:18 final size:18
Alignment explanation
Indices: 103228--103272 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
103218 GTCACAACCC
103228 GACCCGACCCGA-CCTGTT
1 GACCCGACCCGATCC-GTT
*
103246 GACCTGACCCGATCCGTT
1 GACCCGACCCGATCCGTT
103264 GACCCGACC
1 GACCCGACC
103273 GGTTGGCCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 22 0.92
19 2 0.08
ACGTcount: A:0.18, C:0.44, G:0.22, T:0.16
Consensus pattern (18 bp):
GACCCGACCCGATCCGTT
Found at i:106365 original size:20 final size:20
Alignment explanation
Indices: 106340--106390 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
106330 CACTTAGGGA
106340 ACCGATTCCCCATAGGGGGT
1 ACCGATTCCCCATAGGGGGT
*
106360 ACCGATTCCTCATAGGGGGT
1 ACCGATTCCCCATAGGGGGT
*
106380 ATCGATTCCCC
1 ACCGATTCCCC
106391 CCACGCTCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.20, C:0.31, G:0.25, T:0.24
Consensus pattern (20 bp):
ACCGATTCCCCATAGGGGGT
Found at i:111758 original size:23 final size:21
Alignment explanation
Indices: 111706--111767 Score: 81
Period size: 23 Copynumber: 2.9 Consensus size: 21
111696 TTTTGGTGCA
*
111706 GAGGGAATCGA-TCCCCCCTT
1 GAGGGAACCGATTCCCCCCTT
*
111726 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCCTT
111747 GAAGGGGAACCGATTCCCCCC
1 G-A-GGGAACCGATTCCCCCC
111768 CACAGGGGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.28
21 9 0.25
22 1 0.03
23 16 0.44
ACGTcount: A:0.21, C:0.35, G:0.26, T:0.18
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCCTT
Found at i:113888 original size:13 final size:13
Alignment explanation
Indices: 113870--113894 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
113860 GCCATTTCAC
113870 ATTAATTATGAAT
1 ATTAATTATGAAT
113883 ATTAATTATGAA
1 ATTAATTATGAA
113895 ACTCATGGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
ATTAATTATGAAT
Found at i:115415 original size:32 final size:31
Alignment explanation
Indices: 115344--115418 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
115334 AATGTGACTT
* * *
115344 TTAGGTAGGCTCTGCGGCCCTGAGATCATTC
1 TTAGGTAGGCCCTGCGACCCTAAGATCATTC
* **
115375 TCAGGTAGGCCCTGCGACCCTAAGATGTGTTC
1 TTAGGTAGGCCCTGCGACCCTAAGAT-CATTC
115407 TTAGGTAGGCCC
1 TTAGGTAGGCCC
115419 CACATCCCTA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 22 0.61
32 14 0.39
ACGTcount: A:0.17, C:0.27, G:0.29, T:0.27
Consensus pattern (31 bp):
TTAGGTAGGCCCTGCGACCCTAAGATCATTC
Found at i:124382 original size:111 final size:111
Alignment explanation
Indices: 124190--124520 Score: 590
Period size: 111 Copynumber: 3.0 Consensus size: 111
124180 AAAATCATAT
*
124190 ATCTCTACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATA
1 ATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATA
* * *
124255 TTTAGTTGATTTATTTAATGCATGATTATTAGATGAAGAATTAAAT
66 ATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAAAC
* *
124301 ATCTCGATATTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATA
1 ATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATA
*
124366 ATTAGTTGATTTATTTAATCCATGATTATTAGATTAAGAATTAAAC
66 ATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAAAC
*
124412 ATCTCGACACTTTGCTAATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATA
1 ATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATA
124477 ATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 ATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
124521 TTTTTGTAAT
Statistics
Matches: 209, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 209 1.00
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.45
Consensus pattern (111 bp):
ATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAATA
ATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAAAC
Found at i:127460 original size:6 final size:6
Alignment explanation
Indices: 127449--127513 Score: 55
Period size: 6 Copynumber: 11.3 Consensus size: 6
127439 ACATGCTTAG
** * *
127449 GATGAC GATGAC GATGGT GATGAC G--G-C GACGAC GATGAT GATGAC
1 GATGAC GATGAC GATGAC GATGAC GATGAC GATGAC GATGAC GATGAC
* *
127494 GACGAC GACGAC GATGAC GA
1 GATGAC GATGAC GATGAC GA
127514 CAGCGAGGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
3 2 0.04
4 1 0.02
5 1 0.02
6 43 0.91
ACGTcount: A:0.31, C:0.18, G:0.37, T:0.14
Consensus pattern (6 bp):
GATGAC
Found at i:127472 original size:18 final size:18
Alignment explanation
Indices: 127449--127514 Score: 69
Period size: 18 Copynumber: 3.5 Consensus size: 18
127439 ACATGCTTAG
* *
127449 GATGACGATGACGATGGT
1 GATGACGACGACGATGAT
127467 GATGACGGCGACGACGATGAT
1 GATGA---CGACGACGATGAT
* *
127488 GATGACGACGACGACGAC
1 GATGACGACGACGATGAT
127506 GATGACGAC
1 GATGACGAC
127515 AGCGAGGAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
18 25 0.61
21 16 0.39
ACGTcount: A:0.30, C:0.20, G:0.36, T:0.14
Consensus pattern (18 bp):
GATGACGACGACGATGAT
Found at i:127484 original size:21 final size:21
Alignment explanation
Indices: 127452--127510 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
127442 TGCTTAGGAT
* *
127452 GACGATGACGATGGTGATGAC
1 GACGACGACGATGATGATGAC
*
127473 GGCGACGACGATGATGATGAC
1 GACGACGACGATGATGATGAC
*
127494 GACGACGACGACGATGA
1 GACGACGACGATGATGA
127511 CGACAGCGAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.31, C:0.19, G:0.37, T:0.14
Consensus pattern (21 bp):
GACGACGACGATGATGATGAC
Found at i:127820 original size:38 final size:37
Alignment explanation
Indices: 127740--127820 Score: 85
Period size: 38 Copynumber: 2.1 Consensus size: 37
127730 TTTTGTTTAT
**
127740 TACCATTTAATATCAGTTATTGTAATTTGTTTATCATT
1 TACCATTTAATATCA-TTATTGTAATTTGTTTATCAAA
*
127778 TACCATTTAAT-TC-TTATTGTAAGTTTGTTGTATTTAAA
1 TACCATTTAATATCATTATTGTAA-TTTGTT-TA-TCAAA
127816 TACCA
1 TACCA
127821 AATTGTTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
35 9 0.24
36 6 0.16
37 4 0.11
38 18 0.49
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.51
Consensus pattern (37 bp):
TACCATTTAATATCATTATTGTAATTTGTTTATCAAA
Found at i:135236 original size:27 final size:28
Alignment explanation
Indices: 135205--135258 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 28
135195 AAATTTTAAA
135205 ATCATTTGATTCTCAA-AATTCAACATC
1 ATCATTTGATTCTCAATAATTCAACATC
*
135232 ATCATTTGATTCTCAATGATTCAACAT
1 ATCATTTGATTCTCAATAATTCAACAT
135259 GATGATGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 16 0.64
28 9 0.36
ACGTcount: A:0.35, C:0.20, G:0.06, T:0.39
Consensus pattern (28 bp):
ATCATTTGATTCTCAATAATTCAACATC
Found at i:139207 original size:23 final size:23
Alignment explanation
Indices: 139181--139231 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
139171 TGAGGTTAGG
139181 TGATGAAACATAGATGAAATATA
1 TGATGAAACATAGATGAAATATA
*
139204 TGATGATACATAGATGAAATATA
1 TGATGAAACATAGATGAAATATA
139227 T-ATGA
1 TGATGA
139232 TATAAGAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 4 0.15
23 23 0.85
ACGTcount: A:0.49, C:0.04, G:0.18, T:0.29
Consensus pattern (23 bp):
TGATGAAACATAGATGAAATATA
Found at i:139231 original size:11 final size:11
Alignment explanation
Indices: 139182--139222 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
139172 GAGGTTAGGT
139182 GATGAAACATA
1 GATGAAACATA
*
139193 GATGAAATATA
1 GATGAAACATA
*
139204 TGATGATACATA
1 -GATGAAACATA
139216 GATGAAA
1 GATGAAA
139223 TATATATGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.51, C:0.05, G:0.20, T:0.24
Consensus pattern (11 bp):
GATGAAACATA
Found at i:139668 original size:23 final size:23
Alignment explanation
Indices: 139648--139729 Score: 69
Period size: 23 Copynumber: 3.5 Consensus size: 23
139638 TATATGGCCA
139648 TACGGTGCAATTCTATGTGGCAC
1 TACGGTGCAATTCTATGTGGCAC
* * * *
139671 TTCGGTGCATTTCTACGCGGTC-C
1 TACGGTGCAATTCTATGTGG-CAC
*
139694 TTCGG-GACAATTTCTATGTGGCAC
1 TACGGTG-CAA-TTCTATGTGGCAC
*
139718 TTCGGTGCAATT
1 TACGGTGCAATT
139730 TATACGAGCT
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
22 1 0.02
23 27 0.57
24 18 0.38
25 1 0.02
ACGTcount: A:0.17, C:0.23, G:0.26, T:0.34
Consensus pattern (23 bp):
TACGGTGCAATTCTATGTGGCAC
Found at i:139720 original size:24 final size:24
Alignment explanation
Indices: 139650--139730 Score: 98
Period size: 24 Copynumber: 3.5 Consensus size: 24
139640 TATGGCCATA
139650 CGGTGCAA-TTCTATGTGGCACTT
1 CGGTGCAATTTCTATGTGGCACTT
* *
139673 CGGTGC-ATTTCTACGCGGTC-CTT
1 CGGTGCAATTTCTATGTGG-CACTT
139696 CGG-GACAATTTCTATGTGGCACTT
1 CGGTG-CAATTTCTATGTGGCACTT
139720 CGGTGCAATTT
1 CGGTGCAATTT
139731 ATACGAGCTG
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
22 2 0.04
23 22 0.46
24 23 0.48
25 1 0.02
ACGTcount: A:0.16, C:0.23, G:0.26, T:0.35
Consensus pattern (24 bp):
CGGTGCAATTTCTATGTGGCACTT
Found at i:140461 original size:21 final size:22
Alignment explanation
Indices: 140435--140478 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
140425 TGTAACAGTA
*
140435 CTGTAGCA-GGGTATCGGTTCC
1 CTGTAGCAGGGGAATCGGTTCC
140456 CTGTAGCAGGGGAATCGGTTCC
1 CTGTAGCAGGGGAATCGGTTCC
140478 C
1 C
140479 CTCTTTGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.16, C:0.25, G:0.34, T:0.25
Consensus pattern (22 bp):
CTGTAGCAGGGGAATCGGTTCC
Found at i:145759 original size:14 final size:14
Alignment explanation
Indices: 145717--145760 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
145707 ATGAAACATA
145717 GATGAAATATATAT
1 GATGAAATATATAT
*
145731 GATG--ATACATA-
1 GATGAAATATATAT
145742 GATGAAATATATAT
1 GATGAAATATATAT
145756 GATGA
1 GATGA
145761 TATAAGAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 4 0.16
12 6 0.24
13 6 0.24
14 9 0.36
ACGTcount: A:0.48, C:0.02, G:0.18, T:0.32
Consensus pattern (14 bp):
GATGAAATATATAT
Found at i:145776 original size:25 final size:25
Alignment explanation
Indices: 145705--145762 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
145695 TGAGGTTAGG
*
145705 TGATGAAACATAGATGAAATATATA
1 TGATGATACATAGATGAAATATATA
145730 TGATGATACATAGATGAAATATATA
1 TGATGATACATAGATGAAATATATA
145755 TGATGATA
1 TGATGATA
145763 TAAGAATAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.48, C:0.03, G:0.17, T:0.31
Consensus pattern (25 bp):
TGATGATACATAGATGAAATATATA
Found at i:146197 original size:23 final size:23
Alignment explanation
Indices: 146177--146258 Score: 69
Period size: 23 Copynumber: 3.5 Consensus size: 23
146167 TATATGGCCA
146177 TACGGTGCAATTCTATGTGGCAC
1 TACGGTGCAATTCTATGTGGCAC
* * *
146200 TTCGGTGCATTTCTATGCGGTC-C
1 TACGGTGCAATTCTATGTGG-CAC
* *
146223 TTCGG-GATAATTTCTATGTGGCAC
1 TACGGTG-CAA-TTCTATGTGGCAC
*
146247 TTCGGTGCAATT
1 TACGGTGCAATT
146259 TATACGAGCT
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
22 1 0.02
23 27 0.57
24 18 0.38
25 1 0.02
ACGTcount: A:0.17, C:0.21, G:0.26, T:0.37
Consensus pattern (23 bp):
TACGGTGCAATTCTATGTGGCAC
Found at i:146249 original size:24 final size:24
Alignment explanation
Indices: 146187--146259 Score: 73
Period size: 24 Copynumber: 3.1 Consensus size: 24
146177 TACGGTGCAA
*
146187 TTCTATGTGGCACTTC-GGTGCAT
1 TTCTATGTGGCACTTCGGGTGAAT
*
146210 TTCTATGCGGTC-CTTCGGGAT-AAT
1 TTCTATGTGG-CACTTCGGG-TGAAT
146234 TTCTATGTGGCACTTC-GGTGCAAT
1 TTCTATGTGGCACTTCGGGTG-AAT
146258 TT
1 TT
146260 ATACGAGCTG
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
22 1 0.02
23 16 0.39
24 23 0.56
25 1 0.02
ACGTcount: A:0.15, C:0.21, G:0.25, T:0.40
Consensus pattern (24 bp):
TTCTATGTGGCACTTCGGGTGAAT
Found at i:147003 original size:21 final size:22
Alignment explanation
Indices: 146977--147017 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
146967 AACAGTACTG
*
146977 TAGCA-GGGTATCGGTTCCCTA
1 TAGCAGGGGAATCGGTTCCCTA
146998 TAGCAGGGGAATCGGTTCCC
1 TAGCAGGGGAATCGGTTCCC
147018 CTCTTTGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.24
Consensus pattern (22 bp):
TAGCAGGGGAATCGGTTCCCTA
Found at i:149351 original size:49 final size:49
Alignment explanation
Indices: 149290--149385 Score: 147
Period size: 49 Copynumber: 2.0 Consensus size: 49
149280 GGACTTAATA
* *
149290 ATGCACCGAAAGTTGAATTAATAAGTTGGCAACAATAGTTGAAAGTTTG
1 ATGCACCAAAAGTTGAATTAATAAGTTGGCAACAATAATTGAAAGTTTG
* * *
149339 ATGCACCAAAAGTTGCATTAATAAGTTGGCAGCCATAATTGAAAGTT
1 ATGCACCAAAAGTTGAATTAATAAGTTGGCAACAATAATTGAAAGTT
149386 GGAAGCATGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (49 bp):
ATGCACCAAAAGTTGAATTAATAAGTTGGCAACAATAATTGAAAGTTTG
Found at i:161957 original size:21 final size:19
Alignment explanation
Indices: 161911--161959 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
161901 TACCCGCGAT
161911 GGCCGCAATAGCGTCCGAC
1 GGCCGCAATAGCGTCCGAC
*
161930 AGCCGCAATAGC-TCCCGTGAC
1 GGCCGCAATAGCGT-CC--GAC
161951 GGCCGCAAT
1 GGCCGCAAT
161960 CACGGTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 1 0.04
19 13 0.52
21 11 0.44
ACGTcount: A:0.22, C:0.37, G:0.29, T:0.12
Consensus pattern (19 bp):
GGCCGCAATAGCGTCCGAC
Found at i:163964 original size:5 final size:5
Alignment explanation
Indices: 163954--164032 Score: 77
Period size: 5 Copynumber: 14.6 Consensus size: 5
163944 TATAAAGTTC
* * *
163954 TTTAT TTTAT TTTAT TTTCT TTTAT TTTAT TTTCT TTTCT TTTCAGGT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT-A--T
164002 TTTCAT TTTAT TTTAT TTTAAGT TTTAT TTT
1 TTT-AT TTTAT TTTAT TTT-A-T TTTAT TTT
164033 TAAATATGCT
Statistics
Matches: 65, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
5 49 0.75
6 6 0.09
7 4 0.06
8 6 0.09
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.75
Consensus pattern (5 bp):
TTTAT
Found at i:172506 original size:18 final size:17
Alignment explanation
Indices: 172479--172512 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
172469 TTCTGCTATA
172479 TTTTTATTTTGTTTTTG
1 TTTTTATTTTGTTTTTG
172496 TTTTTATTTTTGTTTTT
1 TTTTTA-TTTTGTTTTT
172513 TATTTCGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.85
Consensus pattern (17 bp):
TTTTTATTTTGTTTTTG
Found at i:174277 original size:18 final size:17
Alignment explanation
Indices: 174256--174300 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
174246 ATGTTGAATG
174256 CGAAAAAAAACAGCA-GTT
1 CGAAAAAAAA-AG-ATGTT
*
174274 CGAAAAAAAATGATGTT
1 CGAAAAAAAAAGATGTT
174291 CGAAAAAAAA
1 CGAAAAAAAA
174301 GAAAAAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 1 0.04
17 14 0.56
18 10 0.40
ACGTcount: A:0.60, C:0.11, G:0.16, T:0.13
Consensus pattern (17 bp):
CGAAAAAAAAAGATGTT
Found at i:174334 original size:23 final size:21
Alignment explanation
Indices: 174292--174334 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
174282 AATGATGTTC
174292 GAAAAAAAAGAAAAAAAACAT
1 GAAAAAAAAGAAAAAAAACAT
*
174313 GAAAAAAATGGAAAACAAAACA
1 GAAAAAAA-AGAAAA-AAAACA
174335 ACAAAAGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 5 0.26
23 6 0.32
ACGTcount: A:0.77, C:0.07, G:0.12, T:0.05
Consensus pattern (21 bp):
GAAAAAAAAGAAAAAAAACAT
Found at i:174340 original size:23 final size:21
Alignment explanation
Indices: 174293--174340 Score: 51
Period size: 23 Copynumber: 2.2 Consensus size: 21
174283 ATGATGTTCG
**
174293 AAAAAAAAGAAAAAAAACATG
1 AAAAAAAAGAAAAAAAACAAC
*
174314 AAAAAAATGGAAAACAAAACAAC
1 AAAAAAA-AGAAAA-AAAACAAC
174337 AAAA
1 AAAA
174341 GTTTGAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 7 0.32
22 5 0.23
23 10 0.45
ACGTcount: A:0.79, C:0.08, G:0.08, T:0.04
Consensus pattern (21 bp):
AAAAAAAAGAAAAAAAACAAC
Found at i:184377 original size:53 final size:54
Alignment explanation
Indices: 184264--184547 Score: 233
Period size: 53 Copynumber: 5.3 Consensus size: 54
184254 TGAGACTTGA
* * ** * * * * *
184264 AAAATCCTTGGAAAACATGTTCACTCCCTATTCCTTCATGGAGTAGA-AACTCG
1 AAAATCTTTTGAAAACGGGTTCGCTCCCTCTTTCTTCAGGGAGTATAGAACTCG
* *** *
184317 TACAATCTTTTGCCTACGGGTTCGCT-CCTCTTTCTTCAGGGAGTATAGAACTTG
1 -AAAATCTTTTGAAAACGGGTTCGCTCCCTCTTTCTTCAGGGAGTATAGAACTCG
* * *
184371 AAAATCTTCTGCAAACGGGTTCTCTCCCTCTTTCTTCA-GGAGTATAGAACTCG
1 AAAATCTTTTGAAAACGGGTTCGCTCCCTCTTTCTTCAGGGAGTATAGAACTCG
* * * * *
184424 AAAATCTTTTGAAAACGTGTT-GCT-CTTATTCCTTCAGAGAGTAT-GAGACTCG
1 AAAATCTTTTGAAAACGGGTTCGCTCCCTCTTTCTTCAGGGAGTATAGA-ACTCG
* ** *
184476 AACAATC--TTCAACAATCGGGTTCATTCCCTCTTTCTCCAGGGAGTATAGAACTCG
1 AA-AATCTTTTGAA-AA-CGGGTTCGCTCCCTCTTTCTTCAGGGAGTATAGAACTCG
184531 AAAATCTTTTGAAAACG
1 AAAATCTTTTGAAAACG
184548 TGTATGCTCC
Statistics
Matches: 180, Mismatches: 38, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
51 15 0.08
52 17 0.09
53 78 0.43
54 40 0.22
55 24 0.13
56 6 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.32
Consensus pattern (54 bp):
AAAATCTTTTGAAAACGGGTTCGCTCCCTCTTTCTTCAGGGAGTATAGAACTCG
Found at i:184483 original size:106 final size:106
Alignment explanation
Indices: 184350--184595 Score: 340
Period size: 106 Copynumber: 2.3 Consensus size: 106
184340 GCTCCTCTTT
* * ** *
184350 CTTCAGGGAGTAT-AGAACTTGAA-AATCTTCTGCAAACGGGTTC-TCTCCCTCTTTCTTCA-GG
1 CTTCAGAGAGTATGAG-ACTCGAACAATCTTCAACAAACGGGTTCAT-TCCCTCTTTCTCCAGGG
*
184411 AGTATAGAACTCGAAAATCTTTTGAAAACGTGT-TGCTCTTATTC
64 AGTATAGAACTCGAAAATCTTTTGAAAACGTGTATGCTCCTA--C
*
184455 CTTCAGAGAGTATGAGACTCGAACAATCTTCAACAATCGGGTTCATTCCCTCTTTCTCCAGGGAG
1 CTTCAGAGAGTATGAGACTCGAACAATCTTCAACAAACGGGTTCATTCCCTCTTTCTCCAGGGAG
184520 TATAGAACTCGAAAATCTTTTGAAAACGTGTATGCTCCTAC
66 TATAGAACTCGAAAATCTTTTGAAAACGTGTATGCTCCTAC
184561 CTTCAGAGAGAGTATGAGACTCGAACAATCTTCAA
1 CTTC--AGAGAGTATGAGACTCGAACAATCTTCAA
184596 AAATCGTCTC
Statistics
Matches: 127, Mismatches: 7, Indels: 11
0.88 0.05 0.08
Matches are distributed among these distances:
105 18 0.14
106 37 0.29
107 36 0.28
108 36 0.28
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (106 bp):
CTTCAGAGAGTATGAGACTCGAACAATCTTCAACAAACGGGTTCATTCCCTCTTTCTCCAGGGAG
TATAGAACTCGAAAATCTTTTGAAAACGTGTATGCTCCTAC
Found at i:184583 original size:53 final size:52
Alignment explanation
Indices: 184404--184592 Score: 142
Period size: 51 Copynumber: 3.6 Consensus size: 52
184394 CTCCCTCTTT
*
184404 CTTCAG-GAGTATAGAACTCGAA-AATCTTTTGAAAACGTGT-TGCTCTTATTC
1 CTTCAGAGAGTATAGAACTCGAACAATCTTTTGAAAACGTGTATGCTCCTA--C
* * * * **
184455 CTTCAGAGAGTAT-GAGACTCGAACAATC--TTCAACAATCGGGTTCATTCCCTCTTT
1 CTTCAGAGAGTATAGA-ACTCGAACAATCTTTTGAA-AA-CGTG-T-ATGCTC-CTAC
* *
184510 CTCCAGGGAGTATAGAACTCGAA-AATCTTTTGAAAACGTGTATGCTCCTAC
1 CTTCAGAGAGTATAGAACTCGAACAATCTTTTGAAAACGTGTATGCTCCTAC
184561 CTTCAGAGAG-AGTATGAGACTCGAACAATCTT
1 CTTCAGAGAGTA-TA-GA-ACTCGAACAATCTT
184593 CAAAAATCGT
Statistics
Matches: 105, Mismatches: 17, Indels: 29
0.70 0.11 0.19
Matches are distributed among these distances:
50 1 0.01
51 24 0.23
52 21 0.20
53 15 0.14
54 14 0.13
55 20 0.19
56 9 0.09
57 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (52 bp):
CTTCAGAGAGTATAGAACTCGAACAATCTTTTGAAAACGTGTATGCTCCTAC
Found at i:184601 original size:108 final size:105
Alignment explanation
Indices: 184386--184601 Score: 337
Period size: 108 Copynumber: 2.0 Consensus size: 105
184376 CTTCTGCAAA
* *
184386 CGGGTTCTCTCCCTCTTTCTTCAGGAGTATAGAACTCGAAAATCTTTTGAAAACGTGTTGCTCTT
1 CGGGTTCTCTCCCTCTTTCTCCAGGAGTATAGAACTCGAAAATCTTTTGAAAACGTGTTGCTCCT
*
184451 ATTCCTTCAGAGAGTATGAGACTCGAACAATCTTCAACAAT
66 A-TCCTTCAGAGAGTATGAGACTCGAACAATCTTCAAAAAT
184492 CGGGTTCAT-TCCCTCTTTCTCCAGGGAGTATAGAACTCGAAAATCTTTTGAAAACGTGTATGCT
1 CGGGTTC-TCTCCCTCTTTCTCCA-GGAGTATAGAACTCGAAAATCTTTTGAAAACGTGT-TGCT
184556 CCTA-CCTTCAGAGAGAGTATGAGACTCGAACAATCTTCAAAAAT
63 CCTATCCTTC--AGAGAGTATGAGACTCGAACAATCTTCAAAAAT
184600 CG
1 CG
184602 TCTCCCTATC
Statistics
Matches: 102, Mismatches: 3, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
106 25 0.25
107 36 0.35
108 41 0.40
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (105 bp):
CGGGTTCTCTCCCTCTTTCTCCAGGAGTATAGAACTCGAAAATCTTTTGAAAACGTGTTGCTCCT
ATCCTTCAGAGAGTATGAGACTCGAACAATCTTCAAAAAT
Found at i:185774 original size:199 final size:198
Alignment explanation
Indices: 185435--185829 Score: 781
Period size: 199 Copynumber: 2.0 Consensus size: 198
185425 ATGTTGCCAG
185435 TCTGTCTTTCATCTATTCTGATCTCTTGGACCTTCTACTTCAAGGTCGCGAAATGCTTCATATTA
1 TCTGTCTTTCATCTATTCTGATCTCTTGGACCTTCTACTTCAAGGTCGCGAAATGCTTCATATTA
185500 TGGCGCGCTTATTCTCTTTCTTCCAATGGAGGCATAATGAGCCTCTCCAGCTGCAAGGACTTTTC
66 TGGCGCGCTTATTCTCTTTCTTCCAATGGAGGCATAATGAGCCTCTCCAGCTGCAAGGACTTTTC
185565 ACATTTGAAACTTGTCCTGTTTGAAAATGTTTTTATCCCTTCTCTTATTTTAGGGAATGTGAAAA
131 ACATTTGAAACTTGTCCTGTTTGAAAATGTTTTTATCCCTTCTCTTATTTTAGGGAATGTGAAAA
185630 AGT
196 AGT
185633 TCTGTCTTTCATCTATTCTGATCTCTTGGACCTTCTACTTCAAGGTCGCGAAATGCTTCATATTA
1 TCTGTCTTTCATCTATTCTGATCTCTTGGACCTTCTACTTCAAGGTCGCGAAATGCTTCATATTA
185698 TGGCGCCGCTTATTCTCTTTCTTCCAATGGAGGCATAATGAGCCTCTCCAGCTGCAAGGACTTTT
66 TGGCG-CGCTTATTCTCTTTCTTCCAATGGAGGCATAATGAGCCTCTCCAGCTGCAAGGACTTTT
185763 CACATTTGAAACTTGTCCTGTTTGAAAATGTTTTTATCCCTTCTCTTATTTTAGGGAATGTGAAA
130 CACATTTGAAACTTGTCCTGTTTGAAAATGTTTTTATCCCTTCTCTTATTTTAGGGAATGTGAAA
185828 AA
195 AA
185830 AATTATGAAA
Statistics
Matches: 196, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
198 70 0.36
199 126 0.64
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (198 bp):
TCTGTCTTTCATCTATTCTGATCTCTTGGACCTTCTACTTCAAGGTCGCGAAATGCTTCATATTA
TGGCGCGCTTATTCTCTTTCTTCCAATGGAGGCATAATGAGCCTCTCCAGCTGCAAGGACTTTTC
ACATTTGAAACTTGTCCTGTTTGAAAATGTTTTTATCCCTTCTCTTATTTTAGGGAATGTGAAAA
AGT
Found at i:186630 original size:16 final size:15
Alignment explanation
Indices: 186606--186635 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
186596 TTTCATTCTT
186606 TTTTCATTTTTCTCA
1 TTTTCATTTTTCTCA
186621 TTTTCAATTTTTCTC
1 TTTTC-ATTTTTCTC
186636 TTTCTTTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.13, C:0.20, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTCATTTTTCTCA
Found at i:186655 original size:23 final size:22
Alignment explanation
Indices: 186629--186712 Score: 71
Period size: 23 Copynumber: 3.6 Consensus size: 22
186619 CATTTTCAAT
186629 TTTTCTCTTTCTTTTCCTTTTTA
1 TTTTCTC-TTCTTTTCCTTTTTA
* * *
186652 TTTTCTTTTTCATTTCATTTTT-
1 TTTTC-TCTTCTTTTCCTTTTTA
*
186674 TTTATCTCTTCTTTTTCTCTTTCTA
1 TTT-TCTCTTC-TTTTC-CTTTTTA
186699 TATTTCTCTTCTTT
1 T-TTTCTCTTCTTT
186713 CTCTTTATGA
Statistics
Matches: 48, Mismatches: 7, Indels: 11
0.73 0.11 0.17
Matches are distributed among these distances:
22 7 0.15
23 23 0.48
24 8 0.17
25 8 0.17
26 2 0.04
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTTCTCTTCTTTTCCTTTTTA
Found at i:189290 original size:20 final size:21
Alignment explanation
Indices: 189265--189319 Score: 85
Period size: 20 Copynumber: 2.7 Consensus size: 21
189255 CATGTGATGT
189265 GGTCTTCTCGTCTTTACG-AA
1 GGTCTTCTCGTCTTTACGAAA
* *
189285 GGTCTTCTCGTCGTTATGAAA
1 GGTCTTCTCGTCTTTACGAAA
189306 GGTCTTCTCGTCTT
1 GGTCTTCTCGTCTT
189320 GATGAATAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 16 0.52
21 15 0.48
ACGTcount: A:0.13, C:0.24, G:0.22, T:0.42
Consensus pattern (21 bp):
GGTCTTCTCGTCTTTACGAAA
Found at i:189309 original size:21 final size:21
Alignment explanation
Indices: 189265--189380 Score: 114
Period size: 21 Copynumber: 5.6 Consensus size: 21
189255 CATGTGATGT
* *
189265 GGTCTTCTCGTCTTTACG-AA
1 GGTCTTCTCGTCTTGATGAAA
189285 GGTCTTCTCGTCGTT-ATGAAA
1 GGTCTTCTCGTC-TTGATGAAA
189306 GGTCTTCTCGTCTTGATGAATA
1 GGTCTTCTCGTCTTGATGAA-A
*
189328 -GTATTCTCGTCTTGATG-AA
1 GGTCTTCTCGTCTTGATGAAA
* * *
189347 TGACATTCTCGTCTTGATGAAT
1 GGTC-TTCTCGTCTTGATGAAA
*
189369 GCTCTTCTCGTC
1 GGTCTTCTCGTC
189381 CTTGGTACGA
Statistics
Matches: 81, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
19 1 0.01
20 18 0.22
21 59 0.73
22 3 0.04
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.41
Consensus pattern (21 bp):
GGTCTTCTCGTCTTGATGAAA
Found at i:202908 original size:3 final size:3
Alignment explanation
Indices: 202900--202948 Score: 82
Period size: 3 Copynumber: 16.7 Consensus size: 3
202890 TTGTCCGGGA
*
202900 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT TAA TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
202947 TA
1 TA
202949 ATACTATTTA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:206936 original size:125 final size:125
Alignment explanation
Indices: 206706--207002 Score: 443
Period size: 125 Copynumber: 2.4 Consensus size: 125
206696 GGCCAAGATG
* * * * * *
206706 TTTGGGGTGATGGGGCATTTTGAAGGCCCGTACCAGTATAAGATAACATTGGGGCACGACTGAGC
1 TTTGAGGTGATGGGGCATTTTGAAGGCTCGTACCAGTATAAGATAATATTGGGGAACGACTAAAC
* * * *
206771 CCACATCATGTTGAGATGACAAAATTCATACCAAGGAGGCA-TGAAGAATGAGCCTTACAA
66 CCACATCATGTTGAGATGACAAAATTCAGAACAAGAAGGCATTG-AGAATAAGCCTTACAA
206831 TTTGAGGTGATGGGGCATTTTGAAGGCTCGTACCAGTATAAGATAATATTGGGGAACGACTAAAC
1 TTTGAGGTGATGGGGCATTTTGAAGGCTCGTACCAGTATAAGATAATATTGGGGAACGACTAAAC
* * *
206896 CCACATCATGTTGATATGGCAAGATTCAGAACAAGAAGGCATTGAGAATAAGCCTTACAA
66 CCACATCATGTTGAGATGACAAAATTCAGAACAAGAAGGCATTGAGAATAAGCCTTACAA
* *
206956 TTTGAGGTGTTGGGGCATTTTGAAGGCTCGTACCAATATAAGATAAT
1 TTTGAGGTGATGGGGCATTTTGAAGGCTCGTACCAGTATAAGATAAT
207003 GTTGTGGCAC
Statistics
Matches: 156, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
125 154 0.99
126 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (125 bp):
TTTGAGGTGATGGGGCATTTTGAAGGCTCGTACCAGTATAAGATAATATTGGGGAACGACTAAAC
CCACATCATGTTGAGATGACAAAATTCAGAACAAGAAGGCATTGAGAATAAGCCTTACAA
Found at i:207992 original size:22 final size:22
Alignment explanation
Indices: 207952--207993 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
207942 GCATATATAT
*
207952 ATATATATATATATTTCATGAC
1 ATATATATATATATGTCATGAC
207974 ATATATATA-ATCATGTCATG
1 ATATATATATAT-ATGTCATG
207994 CACACATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (22 bp):
ATATATATATATATGTCATGAC
Found at i:208225 original size:15 final size:15
Alignment explanation
Indices: 208205--208254 Score: 91
Period size: 15 Copynumber: 3.3 Consensus size: 15
208195 CCGTAGGACC
208205 ACTACGTCCCGAAGG
1 ACTACGTCCCGAAGG
208220 ACTACGTCCCGAAGG
1 ACTACGTCCCGAAGG
*
208235 ACTACATCCCGAAGG
1 ACTACGTCCCGAAGG
208250 ACTAC
1 ACTAC
208255 AATACCCTCG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.30, C:0.34, G:0.22, T:0.14
Consensus pattern (15 bp):
ACTACGTCCCGAAGG
Found at i:208939 original size:19 final size:20
Alignment explanation
Indices: 208903--208940 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
208893 TTTCATTTAG
208903 GGGGGAATCGATACCCCCCA
1 GGGGGAATCGATACCCCCCA
208923 GGGGGAATCGATACCCCC
1 GGGGGAATCGATACCCCC
208941 TGGACATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.24, C:0.34, G:0.32, T:0.11
Consensus pattern (20 bp):
GGGGGAATCGATACCCCCCA
Found at i:210683 original size:42 final size:42
Alignment explanation
Indices: 210611--210707 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
210601 ACTTAGTAGG
* * *
210611 TCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAA
1 TCCTTAGGGCCATCAGTAAGCCTTTCGAGCAAGATGATTAAA
* * * *
210653 TCCTTAGGGTCATCTGTAAGCCTTTTGAGCAAGATGA-TAAG
1 TCCTTAGGGCCATCAGTAAGCCTTTCGAGCAAGATGATTAAA
* *
210694 TACTTCGGGCCATC
1 TCCTTAGGGCCATC
210708 CATAAGACCT
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
41 14 0.31
42 31 0.69
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (42 bp):
TCCTTAGGGCCATCAGTAAGCCTTTCGAGCAAGATGATTAAA
Found at i:210786 original size:215 final size:215
Alignment explanation
Indices: 210392--211327 Score: 1083
Period size: 215 Copynumber: 4.3 Consensus size: 215
210382 CCAAAATTTA
* * *
210392 TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGTATGATGCTTAAATCCTTAGGGTCATCTGTAA
1 TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTGTAA
* * * *
210457 GCCTTTTGAGCAAGACGATAAGTCATTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCAA
66 GCCTTTTGAGCAAGATGATAAGTCCTTCGGGACATCCATAAGACCTTCGGGTAGGATGTTTTCAA
* * *
210522 AGGAATTTG-AAAATGAGAAAATGATGTTTTAAAGAGACGAAATTTTTGAAAACTAAGAATGCGA
131 AAGAATTTGAAAAATGAGAAAATGATGTTTTAAA-AGATGAAAATTTTGAAAACTAAGAATGCGA
210586 TTTCCAAAATTTCACACTTAG
195 TTTCCAAAATTTCACACTTAG
* * *
210607 TAGGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTAGGGTCATCTGTAA
1 TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTGTAA
* * *
210672 GCCTTTTGAGCAAGATGATAAGTACTTCGGGCCATCCATAAGACCTTCAGGTAGGATGTTTTCAA
66 GCCTTTTGAGCAAGATGATAAGTCCTTCGGGACATCCATAAGACCTTCGGGTAGGATGTTTTCAA
*
210737 AAGAATTTG-AAAATGAGAAAATGATGTTTTAAGAAGATGAAAATTTTGAAAACTATGAATGCGA
131 AAGAATTTGAAAAATGAGAAAATGATGTTTTAA-AAGATGAAAATTTTGAAAACTAAGAATGCGA
*
210801 TTTCCAAAATTTCACATTTAG
195 TTTCCAAAATTTCACACTTAG
* * * *
210822 TAAGTCCTTCGGGCCATCAATAAGTCTTTTGAACATGATGCTTAAATCCTTCGGGTCATCTGTAA
1 TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTGTAA
** * * * *
210887 GCCTTTTGAGCAAGATGATAAGTCCTTTAGGACATCCATAAGACCTTTGGGCATGATGTTTTCAC
66 GCCTTTTGAGCAAGATGATAAGTCCTTCGGGACATCCATAAGACCTTCGGGTAGGATGTTTTCAA
** * * ** * * **
210952 AAGTCTATCGAAAAATGAG-AAA-GATTTCTCATTAAAATCTGAAGA-TTTGAAAAGTAAGAAAA
131 AAGAAT-TTGAAAAATGAGAAAATGATGT-T--TTAAAAGATGAAAATTTTGAAAACTAAGAATG
*** * * *
211014 ATTTCTTACCTAGTAAATTATTTCCAAAATTGG
192 CGAT-TT-CC----AAA--ATTT-CACACTTAG
* * * * *
211047 TATGTCATTCGGGCCATCAGTAAGTCTTTCGAGTATGATGTTTAAACCCTTCGGGTCATCTGTAA
1 TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTGTAA
* * * *
211112 ACCTTTTGAGCAAGGTGATAAGTCCTTCTGGACATCCATAAGACCTTCGGGTAGGATGTTTTCAC
66 GCCTTTTGAGCAAGATGATAAGTCCTTCGGGACATCCATAAGACCTTCGGGTAGGATGTTTTCAA
* * ** * * *
211177 AATAAGTTGAAAAATGAGAAAGCGATGTTTTAAGAAAATG-AAATATTTGAAAACTACGAAGGCG
131 AAGAATTTGAAAAATGAGAAAATGATGTTTTAA-AAGATGAAAAT-TTTGAAAACTAAGAATGCG
* **
211241 ATTTCCAAATTTTTGCACTTAG
194 ATTTCCAAAATTTCACACTTAG
* * *
211263 TAAGTCCTTCGGGCCATCAGCAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTAATTTGTAA
1 TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTGTAA
211328 CTTCACGAAA
Statistics
Matches: 608, Mismatches: 93, Indels: 39
0.82 0.13 0.05
Matches are distributed among these distances:
215 321 0.53
216 82 0.13
217 20 0.03
218 6 0.01
219 3 0.00
222 3 0.00
223 8 0.01
224 21 0.03
225 140 0.23
226 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (215 bp):
TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCTGTAA
GCCTTTTGAGCAAGATGATAAGTCCTTCGGGACATCCATAAGACCTTCGGGTAGGATGTTTTCAA
AAGAATTTGAAAAATGAGAAAATGATGTTTTAAAAGATGAAAATTTTGAAAACTAAGAATGCGAT
TTCCAAAATTTCACACTTAG
Found at i:211436 original size:42 final size:42
Alignment explanation
Indices: 211355--211442 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 42
211345 GAAGTAAATC
* * *
211355 CATCAGTAAGTTTTTCGAGTATGATGATGAAATCCTTCGGGA
1 CATCAGTAAGTCTTTCGAGCATGATGATGAAATCATTCGGGA
* * *
211397 CATCAGTAAGTCTTTCGAGCATGATGATTAAATTATTCGGGT
1 CATCAGTAAGTCTTTCGAGCATGATGATGAAATCATTCGGGA
211439 CATC
1 CATC
211443 TATAAGCGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (42 bp):
CATCAGTAAGTCTTTCGAGCATGATGATGAAATCATTCGGGA
Done.