genome.fa.s8305.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008305.1 Hibiscus syriacus cultivar Beakdansim tig00110991_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75669

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104--189	42	2.0	41	84	4	109	43	13	13	29	1.83
13090--13143	20	2.7	21	86	11	69	31	27	7	33	1.84
17931--17997	20	3.7	20	73	22	83	50	23	11	13	1.75
19750--19914	21	8.0	20	73	9	127	19	13	34	32	1.90
19752--19912	63	2.6	61	82	6	191	19	13	35	31	1.90
20199--20331	21	6.3	21	78	3	90	21	35	15	27	1.93
21846--21888	20	2.2	20	95	0	77	16	11	18	53	1.72
22141--22176	6	5.8	6	87	6	54	16	0	19	63	1.30
24406--24472	24	2.8	23	82	6	80	40	17	16	25	1.90
25383--25551	20	8.5	20	66	14	91	36	11	21	30	1.89
25384--25590	40	5.2	39	80	6	220	36	12	22	28	1.90
25367--25652	60	4.8	60	72	10	194	34	11	23	30	1.90
25408--25590	79	2.3	80	80	4	210	37	12	22	27	1.90
25523--25814	20	14.6	20	73	8	121	30	13	25	30	1.94
25523--25755	40	5.8	40	76	6	161	32	14	24	29	1.94
25395--25610	119	1.8	119	83	6	285	36	12	22	28	1.91
25624--25740	61	1.9	60	85	1	162	34	16	20	29	1.94
25623--25755	61	2.2	60	81	5	160	32	15	22	30	1.94
25623--25771	40	3.7	40	81	5	165	32	14	22	30	1.93
30920--30987	23	3.0	23	84	4	84	19	25	25	30	1.98
32499--32540	17	2.4	18	84	4	59	71	2	7	19	1.20
34420--34488	23	3.0	23	82	0	93	30	24	26	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35253--35329	20	3.8	20	75	20	70	25	25	19	28	1.99
43250--43328	26	3.0	26	92	0	140	46	10	17	25	1.79
44867--44905	18	2.2	18	100	0	78	30	41	5	23	1.76
50127--50178	20	2.6	20	96	0	95	38	26	13	21	1.90
50168--50266	21	4.8	20	72	6	72	36	23	19	21	1.95
50233--50426	20	9.6	20	81	5	221	35	25	19	19	1.95
50233--50426	60	3.2	60	83	0	253	35	25	19	19	1.95
50808--50878	33	2.2	33	92	0	115	11	22	18	47	1.80
50999--51053	14	3.6	14	73	21	56	40	23	27	9	1.85
50999--51069	33	2.2	33	92	0	115	42	25	23	8	1.82
51065--51162	19	5.7	19	70	22	81	10	24	22	42	1.84
51087--51176	14	5.7	14	74	23	81	8	25	23	42	1.83
51070--51184	33	3.5	33	95	0	212	9	24	20	45	1.81
52882--53262	184	2.1	186	97	1	739	22	12	18	46	1.83
52882--53260	93	4.1	93	98	1	735	22	12	18	46	1.83
53304--53432	19	7.3	19	72	17	107	44	27	17	10	1.81
53340--53432	33	2.8	32	87	4	132	45	26	18	9	1.80
53304--53432	52	2.5	52	71	12	120	44	27	17	10	1.81
53428--53561	19	7.6	19	76	15	119	11	19	23	45	1.82
53450--53505	14	3.7	14	80	17	67	10	21	23	44	1.83
53433--53524	32	2.8	33	91	3	159	10	20	21	46	1.81
55378--55450	38	1.9	38	97	0	137	28	1	16	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55373--55437	19	3.4	19	64	8	51	24	1	15	58	1.46
55432--55467	14	2.6	14	95	0	63	33	0	22	44	1.53
55574--55675	19	5.6	19	84	13	151	44	17	23	14	1.86
55704--56029	19	18.4	19	80	15	405	14	20	17	47	1.82
55682--56001	52	6.0	52	94	4	550	14	21	16	46	1.83
55704--56029	71	4.6	72	82	13	389	14	20	17	47	1.82
55682--56001	161	2.0	157	93	3	552	14	21	16	46	1.83
55723--56029	33	8.8	33	80	12	280	14	20	17	47	1.82
58334--58358	12	2.1	12	100	0	50	0	28	0	72	0.86
58533--58579	24	2.0	24	87	8	69	38	21	14	25	1.92
59252--59620	20	18.5	20	86	4	458	20	18	26	34	1.96
60955--61011	28	2.1	28	83	3	71	43	10	8	36	1.70
61105--61173	31	2.3	31	85	5	88	37	13	7	42	1.71
74220--74258	19	2.1	19	95	0	69	30	25	10	33	1.89

Tables:   1

The End!