genome.fa.s8306.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008306.1 Hibiscus syriacus cultivar Beakdansim tig00110996_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149393

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9182--9215	16	2.1	16	100	0	68	17	17	20	44	1.87
15490--15586	46	2.1	46	94	0	167	23	20	18	37	1.94
17888--17981	11	8.7	11	81	4	120	15	4	20	59	1.53
17888--17981	21	4.4	22	85	5	129	15	4	20	59	1.53
17888--17989	32	3.2	32	92	0	168	14	3	22	58	1.52
19317--19781	36	12.9	36	84	4	537	33	23	24	18	1.97
19886--19968	11	7.7	11	79	5	98	15	4	20	59	1.55
19886--19968	32	2.6	32	92	0	139	15	4	20	59	1.55
19886--19968	21	3.9	22	85	4	116	15	4	20	59	1.55
19931--19976	21	2.2	21	92	0	74	13	2	26	58	1.46
20313--20439	60	2.1	60	84	7	161	45	2	12	39	1.55
31266--31290	13	1.9	13	100	0	50	20	0	0	80	0.72
32469--32508	17	2.4	17	100	0	80	40	10	25	25	1.86
33755--33837	31	2.7	29	83	9	85	59	9	13	18	1.61
34479--34510	13	2.6	12	90	9	55	75	3	0	21	0.95
35800--35850	22	2.6	18	75	24	57	33	11	3	50	1.57
35807--35866	22	2.7	22	97	0	111	33	13	5	48	1.64
38892--38921	15	1.9	16	93	6	53	6	50	16	26	1.70
53168--53237	35	2.0	35	94	0	122	31	0	24	44	1.54
54493--54737	51	4.9	51	86	4	345	23	13	15	46	1.82
69132--69172	21	1.9	22	90	5	66	26	19	17	36	1.94
69914--69945	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73180--73226	24	1.9	25	83	12	62	29	6	17	46	1.72
73536--73633	30	3.7	29	70	24	97	52	5	6	36	1.49
73560--73636	25	3.1	25	78	10	95	50	3	6	38	1.47
73558--73615	11	4.8	12	77	14	57	55	1	6	36	1.37
73556--73621	24	2.7	23	81	9	78	56	1	7	34	1.37
80763--80813	21	2.5	21	90	3	77	21	5	43	29	1.76
80774--80826	21	2.5	21	87	3	70	16	11	43	28	1.83
80935--81041	20	5.3	20	80	0	133	17	14	26	42	1.87
80931--81062	40	3.3	40	90	4	196	18	15	25	40	1.91
80930--81106	80	2.2	80	81	8	200	19	14	27	38	1.91
81049--81102	20	2.7	19	75	8	63	24	14	33	27	1.94
88946--88999	21	2.3	24	75	21	69	29	11	12	46	1.77
88952--88996	21	2.1	21	95	0	81	28	11	11	48	1.73
89389--89434	20	2.3	20	88	0	65	39	21	17	21	1.93
89397--89435	20	2.0	20	94	0	69	38	23	17	20	1.93
89429--89494	20	3.3	20	97	0	123	45	25	13	15	1.83
90010--90073	20	3.2	20	93	0	110	54	20	15	9	1.68
91761--91810	21	2.4	21	75	0	55	22	10	32	36	1.87
92189--92286	21	4.6	22	77	8	105	22	33	19	24	1.97
92190--92308	42	2.8	42	84	0	130	22	34	19	23	1.96
92196--92308	21	5.4	21	73	8	86	22	34	20	23	1.97
93665--93773	50	2.2	50	88	3	157	26	3	14	55	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93707--93732	13	2.0	13	100	0	52	23	0	15	61	1.33
93847--93952	20	5.2	20	82	2	122	38	22	17	20	1.93
93847--93960	61	1.9	60	92	1	192	36	21	19	21	1.95
93948--93982	14	2.6	14	86	4	54	8	22	25	42	1.82
93948--93990	14	3.1	14	80	6	52	11	20	23	44	1.84
94637--94683	18	2.5	20	86	6	62	38	8	21	31	1.83
94676--94849	20	8.6	20	78	8	131	31	14	23	30	1.95
94778--94927	40	3.8	40	76	11	110	25	14	26	34	1.93
94669--94928	60	4.3	59	71	10	170	28	14	24	32	1.94
98377--98412	18	1.9	19	94	5	65	44	0	0	55	0.99
100431--100462	12	2.7	12	95	0	55	34	3	25	37	1.72
100443--100495	23	2.2	26	90	10	85	39	5	24	30	1.78
100607--100639	15	2.2	15	94	0	57	18	18	30	33	1.94
105562--105681	64	1.9	62	81	3	141	35	20	18	25	1.95
105988--106023	12	3.0	12	91	0	63	33	5	25	36	1.79
105988--106056	24	2.8	26	83	12	85	37	5	24	31	1.79
106168--106199	15	2.1	15	100	0	64	15	18	31	34	1.93
112625--112697	20	3.7	19	76	10	67	26	17	26	30	1.98
116937--116997	21	2.9	21	100	0	122	24	22	27	24	2.00
117526--117576	18	2.7	19	80	14	61	29	0	3	66	1.09
117533--117589	24	2.4	23	73	21	55	28	1	3	66	1.18
118132--118178	19	2.5	19	92	0	76	40	12	19	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119992--120038	19	2.5	19	92	0	76	40	12	19	27	1.88
120943--121162	101	2.2	102	79	2	228	26	18	23	31	1.98
137135--137201	31	2.2	30	84	12	84	49	4	2	43	1.38
143858--143897	21	1.9	21	100	0	80	37	12	0	50	1.41
145261--145300	15	2.7	15	96	3	73	32	10	0	57	1.32
145240--145310	27	2.7	26	76	12	81	36	9	0	53	1.34
145312--145356	19	2.3	20	85	7	58	15	13	0	71	1.15
147127--147595	218	2.1	220	91	4	779	45	7	7	39	1.62
148053--148094	19	2.3	18	88	8	59	47	11	19	21	1.81
147659--148119	179	2.6	175	82	8	558	42	14	17	26	1.87

Tables:   1

The End!