genome.fa.s8307.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008307.1 Hibiscus syriacus cultivar Beakdansim tig00110997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148309

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3783--3848	29	2.3	29	76	5	71	48	4	16	30	1.66
4964--5002	20	1.9	21	89	5	62	35	5	23	35	1.77
6245--6275	2	15.5	2	100	0	62	48	0	0	51	1.00
17829--17880	27	1.9	27	100	0	104	32	21	23	23	1.98
17830--17887	27	2.1	27	93	0	98	32	24	24	18	1.97
28944--29043	29	3.4	29	69	16	73	45	7	16	32	1.74
28996--29060	29	2.2	29	81	5	78	46	4	16	32	1.68
30188--30226	20	1.9	21	89	5	62	35	5	23	35	1.77
42957--43008	27	1.9	27	100	0	104	32	21	23	23	1.98
42958--43015	27	2.1	27	93	0	98	32	24	24	18	1.97
53802--53876	28	2.7	27	86	12	98	76	4	12	8	1.15
56014--56212	47	4.3	47	79	1	175	29	17	20	33	1.95
76037--76109	36	2.0	36	97	0	137	34	17	19	28	1.95
88111--88143	17	1.9	17	93	0	57	39	9	6	45	1.61
95297--95331	18	1.9	18	94	0	61	22	28	20	28	1.98
104299--104339	21	2.0	21	85	0	55	29	14	17	39	1.89
104376--104523	21	6.9	21	83	5	147	25	14	27	33	1.94
104376--104514	44	3.2	43	88	4	192	25	14	26	33	1.94
115053--115099	23	2.0	23	100	0	94	29	21	0	48	1.50
125461--125587	60	2.1	59	85	1	164	29	17	21	31	1.96
125641--125693	20	2.6	20	84	3	70	18	5	24	50	1.68
125690--125842	45	3.4	45	85	7	213	37	6	22	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126515--126581	32	2.1	32	82	0	80	35	14	13	35	1.86
127583--127659	6	12.8	6	75	5	75	29	2	23	44	1.67
127583--127659	24	3.2	24	88	0	118	29	2	23	44	1.67
127594--127693	24	4.2	24	82	5	112	30	6	21	43	1.76
127594--127693	12	8.3	12	70	15	55	30	6	21	43	1.76
136844--136969	60	2.1	59	85	1	162	29	19	23	28	1.98
137037--137075	20	2.0	20	89	0	60	12	5	25	56	1.57
137074--137227	45	3.4	45	86	6	222	37	7	24	30	1.82
137512--137560	22	2.2	22	100	0	98	36	4	10	48	1.56
145352--145387	14	2.6	14	86	0	54	25	5	27	41	1.77
145795--145924	60	2.2	59	90	1	197	29	17	24	28	1.97
146024--146177	45	3.4	45	87	2	229	38	7	24	30	1.82

Tables:   1

The End!