genome.fa.s8309.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008309.1 Hibiscus syriacus cultivar Beakdansim tig00110999_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111767

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5344--5403	21	2.8	21	84	2	66	21	38	25	15	1.92
7942--8143	75	2.8	74	83	4	232	23	31	23	21	1.98
9088--9537	147	3.0	148	94	0	778	26	15	21	36	1.93
9747--9807	21	2.9	21	80	4	61	49	1	18	31	1.57
10422--10463	16	2.6	17	85	7	52	40	0	2	57	1.12
13218--13353	30	4.5	30	86	0	173	52	8	14	24	1.70
13193--13353	60	2.7	60	84	0	196	50	9	15	24	1.74
13193--13360	15	11.2	15	77	0	147	49	10	15	24	1.76
13335--13391	30	1.9	30	85	0	78	38	14	19	28	1.90
13883--13913	14	2.2	14	94	0	53	12	3	12	70	1.27
14638--14690	22	2.4	22	93	0	88	41	0	9	49	1.35
14714--14803	31	2.9	31	96	0	162	43	8	6	41	1.62
14812--14871	22	2.7	22	94	0	111	36	0	10	53	1.35
14877--14935	31	1.9	31	92	0	100	42	10	6	40	1.65
15080--15138	31	1.9	31	89	0	91	44	10	5	40	1.60
16624--16706	29	2.8	29	90	1	130	42	9	15	32	1.80
21387--21469	29	2.8	29	90	1	130	42	9	15	32	1.80
24430--24547	58	2.0	58	98	0	227	32	9	6	51	1.60
24454--24550	29	3.4	29	67	22	87	32	8	6	52	1.56
24515--25368	423	2.0	422	94	0	1512	39	10	12	37	1.78
26327--26385	14	4.1	14	80	4	64	38	5	18	37	1.73
26329--26387	29	2.0	29	90	0	91	40	6	18	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26591--26762	92	1.9	86	80	11	195	45	0	2	51	1.20
26770--26899	30	4.4	30	77	15	121	51	0	1	46	1.15
26794--26874	28	3.0	26	80	18	78	54	1	0	44	1.08
26770--26899	59	2.2	59	82	10	151	51	0	1	46	1.15
26873--26919	18	2.6	18	89	0	67	40	0	6	53	1.27
26952--27002	25	2.1	25	89	7	79	47	0	0	52	1.00
27183--27264	42	2.0	42	90	0	128	46	17	17	19	1.85
28033--28088	23	2.4	23	100	0	112	26	10	25	37	1.88
39100--39154	19	2.8	20	91	5	78	32	20	12	34	1.90
39107--39154	19	2.5	19	96	0	87	29	20	14	35	1.93
39519--39589	31	2.2	33	80	7	83	38	5	9	46	1.61
39640--39941	97	3.2	95	71	14	268	38	4	9	47	1.59
39733--39817	32	2.7	32	81	7	109	41	4	7	47	1.52
39598--39941	184	1.9	183	84	7	464	38	5	9	45	1.61
41828--41853	3	8.7	3	100	0	52	65	0	0	34	0.93
49400--49441	19	2.1	20	86	8	59	47	0	2	50	1.14
49400--49433	2	17.5	2	93	6	61	50	0	0	50	1.00
52280--52361	24	3.4	23	75	8	56	40	9	2	47	1.50
52338--52382	21	2.1	22	87	4	65	51	8	4	35	1.54
52398--52426	15	1.9	15	100	0	58	55	10	0	34	1.34
52488--52530	21	2.0	22	86	4	61	55	4	9	30	1.52
57199--57231	9	3.7	9	95	0	57	27	0	72	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59626--59682	28	2.1	27	83	3	69	35	10	10	43	1.74
59764--59895	29	4.5	29	89	4	194	37	12	12	37	1.81
61026--61186	79	2.0	81	83	9	206	34	15	11	39	1.83
65186--65243	28	2.1	27	84	9	73	37	8	8	44	1.66
65300--65366	29	2.3	30	94	2	118	41	2	16	38	1.64
68732--68762	15	2.0	16	93	6	55	58	0	0	41	0.98
73557--73612	29	1.9	29	92	0	94	19	26	41	12	1.87
73709--73757	10	4.6	11	76	14	50	26	32	28	12	1.92
73744--73789	14	3.3	14	87	0	74	23	41	28	6	1.79
73858--73942	29	2.9	29	87	0	134	21	29	34	15	1.94
86900--86961	26	2.4	26	97	0	115	19	22	25	32	1.97
91069--91100	2	16.0	2	100	0	64	50	0	0	50	1.00
109764--109822	15	4.2	14	75	12	59	25	3	0	71	1.02

Tables:   1

The End!