genome.fa.s831.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000831.1 Hibiscus syriacus cultivar Beakdansim tig00001607_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136111

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3171--3235	21	3.2	21	82	4	80	49	0	3	47	1.17
3172--3245	21	3.5	21	79	5	78	50	0	2	47	1.15
14295--14354	21	2.9	21	97	0	111	16	11	40	31	1.85
14402--14436	17	1.9	17	88	11	52	68	8	11	11	1.39
17713--17750	17	2.3	16	83	16	51	73	0	2	23	0.95
18481--18519	14	2.8	14	88	7	53	74	0	0	25	0.82
18487--18696	12	18.6	11	68	19	57	55	5	1	37	1.33
18511--18780	2	141.5	2	67	27	92	51	7	1	38	1.40
18483--18627	5	27.8	5	73	19	61	57	2	2	37	1.25
18506--18790	7	38.9	7	68	20	129	52	7	1	38	1.39
18519--18591	38	1.9	37	89	8	112	49	2	4	43	1.36
18509--18790	20	14.5	19	68	23	130	52	7	1	38	1.39
18511--18805	15	18.7	15	72	18	142	51	7	2	38	1.42
18515--18787	13	20.5	13	69	17	82	52	8	1	38	1.40
20443--20503	24	2.5	24	86	2	86	44	4	0	50	1.23
20444--20521	28	3.0	25	83	10	88	42	3	0	53	1.19
20451--20555	28	3.9	27	77	9	83	40	2	0	55	1.21
20454--20543	27	3.3	29	77	14	86	42	3	0	54	1.17
20526--20759	116	2.0	116	95	0	423	44	8	9	36	1.68
21303--21420	60	2.0	61	89	1	184	31	17	6	44	1.75
50394--50460	33	2.0	33	88	0	98	17	11	17	52	1.74
53310--53435	63	2.0	62	85	1	171	29	20	7	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57465--57520	22	2.6	21	91	2	85	33	16	26	23	1.95
57467--57520	21	2.5	22	90	3	83	35	16	24	24	1.95
63236--63289	20	2.7	20	94	0	90	20	18	35	25	1.95
63879--63919	17	2.3	17	87	8	55	36	4	2	56	1.34
64007--64037	16	1.9	16	93	0	53	0	9	35	54	1.33
64377--64422	22	2.1	21	84	4	56	41	15	21	21	1.90
66920--66957	3	12.3	3	94	5	67	65	0	34	0	0.93
69723--69762	18	2.3	18	87	8	57	45	5	10	40	1.60
77127--77173	3	16.0	3	88	4	69	68	0	2	29	1.02
77508--77582	39	1.9	38	81	2	87	24	20	36	20	1.95
77369--77807	133	3.3	133	85	4	541	24	18	30	26	1.98
85889--85951	30	2.1	30	84	0	81	31	6	20	41	1.77
92101--92149	3	16.0	3	91	4	80	65	0	2	32	1.04
92101--92149	22	2.3	22	92	3	82	65	0	2	32	1.04
97620--97661	20	2.1	20	86	0	57	23	28	16	30	1.96
115564--115635	20	3.5	20	75	15	65	31	18	25	25	1.97
116550--116578	15	2.0	15	93	6	51	34	0	24	41	1.55
117011--117113	32	3.2	32	81	9	122	27	19	21	32	1.97
117012--117138	32	4.0	30	79	7	110	25	18	22	33	1.97
120586--120643	20	2.7	20	81	10	62	32	18	22	25	1.97
122021--122123	32	3.2	32	81	9	122	28	19	20	32	1.97
123492--123531	16	2.5	16	95	0	71	42	0	27	30	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125636--125673	20	1.9	20	94	0	67	36	18	18	26	1.94
127040--127114	32	2.3	32	88	4	116	28	17	21	33	1.96
128063--128152	27	3.4	27	81	7	112	31	5	21	42	1.75
128159--128241	25	3.3	25	81	0	85	36	8	14	40	1.76
128399--128444	20	2.3	20	96	3	85	30	6	17	45	1.73
129039--129111	23	3.2	23	94	0	128	31	5	26	36	1.79
131735--131798	31	2.0	32	84	3	85	32	43	1	21	1.62
132902--132967	29	2.2	29	86	7	89	50	0	1	48	1.10
133015--133118	31	3.4	32	81	9	101	41	0	5	51	1.32
133046--133127	31	2.7	32	83	9	100	45	1	2	51	1.22
134814--134858	18	2.5	18	81	0	54	77	0	4	17	0.92
135994--136103	38	2.9	38	79	2	105	39	10	6	44	1.63

Tables:   1

The End!