genome.fa.s8313.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008313.1 Hibiscus syriacus cultivar Beakdansim tig00111007_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115678

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2200--2353	31	5.0	31	93	1	256	22	20	20	37	1.95
11062--11121	28	2.1	28	90	0	93	45	21	10	23	1.82
11368--11400	16	2.0	17	88	5	50	42	9	15	33	1.78
18518--18569	15	3.2	17	72	22	58	36	21	0	42	1.53
20890--20940	24	2.1	24	89	7	77	54	1	1	41	1.22
21511--22581	84	13.0	83	79	7	1046	24	20	25	29	1.99
21736--22581	249	3.4	249	95	0	1469	24	20	25	29	1.99
21511--22581	333	3.3	327	82	5	1247	24	20	25	29	1.99
25981--26025	19	2.4	19	92	3	74	66	8	13	11	1.44
29005--29055	24	2.1	24	89	7	77	54	1	1	41	1.22
29608--29719	53	2.1	53	96	0	206	47	6	15	31	1.70
30700--30880	60	3.0	59	79	10	172	33	20	3	41	1.71
31917--32000	41	2.1	39	82	4	96	28	15	20	35	1.93
31997--32089	31	3.2	30	88	10	131	24	29	26	19	1.98
32004--32089	26	3.1	26	86	9	109	24	29	26	19	1.99
32893--32941	2	24.5	2	100	0	98	48	0	0	51	1.00
34303--34347	23	2.0	21	87	8	63	20	2	2	75	1.01
34702--34749	23	2.1	23	88	0	69	35	12	18	33	1.89
35166--35238	23	3.2	23	88	0	110	39	21	5	32	1.77
34816--36302	431	3.5	430	96	0	2742	38	12	7	41	1.72
35607--35669	23	2.7	23	92	0	99	38	20	4	36	1.74
36038--36100	23	2.7	23	92	0	99	38	20	4	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36521--36607	39	2.2	39	93	0	147	17	12	20	49	1.79
36877--36913	18	2.1	18	89	0	56	51	10	5	32	1.60
37707--37772	25	2.6	25	78	0	78	43	13	9	33	1.76
40240--40732	183	2.7	182	94	0	860	33	17	14	34	1.91
41123--41185	23	2.7	23	92	0	99	38	20	4	36	1.74
41551--41613	23	2.7	23	92	0	99	38	20	4	36	1.74
41986--42044	23	2.6	23	88	0	82	40	16	5	37	1.71
40769--42673	431	4.4	431	96	1	3463	39	12	7	40	1.72
42409--42471	23	2.7	23	92	0	99	38	20	4	36	1.74
42974--42998	2	12.5	2	100	0	50	48	0	0	52	1.00
44690--44737	23	2.1	23	88	0	69	35	12	18	33	1.89
45153--45225	23	3.2	23	88	0	110	39	21	5	32	1.77
44804--46290	431	3.5	430	96	0	2699	39	12	7	41	1.71
45584--45656	23	3.2	23	82	7	94	39	21	4	34	1.73
46025--46087	23	2.7	23	92	0	99	38	20	4	36	1.74
47675--47737	6	10.0	6	80	10	54	22	33	4	39	1.75
47679--47722	3	14.7	3	85	0	61	25	34	2	38	1.68
49203--49974	199	3.9	199	97	0	1458	30	17	15	36	1.91
50093--50141	19	2.6	19	93	0	80	57	10	2	30	1.43
51850--51915	33	2.0	33	90	0	105	22	48	0	28	1.51
51949--51992	21	2.1	21	91	0	70	18	31	9	40	1.81
54223--54265	20	2.3	18	85	14	61	20	16	11	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54251--54553	161	1.9	162	91	0	500	29	16	13	40	1.87
54718--55208	229	2.1	228	95	1	894	39	8	7	44	1.63
55455--55479	11	2.3	11	100	0	50	36	24	8	32	1.84
56172--56246	37	2.0	37	82	10	91	49	4	1	45	1.29
55961--57261	656	2.0	656	90	1	2027	37	11	15	35	1.84
57599--57639	20	2.0	20	85	0	55	29	4	0	65	1.13
61419--61462	22	2.0	22	82	8	54	38	2	0	59	1.10
62085--62167	22	3.7	22	78	9	71	39	1	3	55	1.25
75164--75253	45	2.0	45	97	0	171	43	16	13	26	1.85
77022--77460	224	2.0	218	87	4	639	34	17	18	28	1.94
81549--81618	29	2.4	30	77	15	74	58	2	12	25	1.48
96347--96371	13	1.9	13	100	0	50	48	12	8	32	1.69
99321--99422	51	2.0	51	100	0	204	39	17	19	23	1.92
102334--102384	27	1.9	27	84	11	70	52	5	1	39	1.37
102399--102734	37	8.8	38	69	23	158	44	6	4	44	1.49
102499--102575	25	3.0	25	72	7	73	46	5	2	45	1.39
102518--102547	15	1.9	16	93	6	53	53	6	0	40	1.27
102481--102582	27	3.8	26	71	21	86	45	3	3	47	1.40
102552--102703	36	4.1	36	78	7	117	44	6	3	45	1.46
102534--102734	37	5.4	36	80	9	178	44	6	3	44	1.49
102595--102757	74	2.2	71	81	7	175	47	7	3	41	1.50
102632--102758	37	3.5	34	77	11	101	47	8	3	40	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103146--104073	248	3.7	250	90	3	1239	25	20	24	30	1.99
103146--104064	334	2.8	333	91	2	1431	25	20	24	30	1.99
110490--110540	27	1.9	27	84	11	70	52	5	1	39	1.37
110555--110885	37	8.8	38	67	25	113	44	6	4	45	1.49
110655--110731	25	3.0	25	72	7	73	46	5	2	45	1.39
110674--110703	15	1.9	16	93	6	53	53	6	0	40	1.27
110637--110738	27	3.8	26	71	21	86	45	3	3	47	1.40
110690--110872	34	5.2	35	73	18	130	44	7	3	44	1.49
110785--110908	37	3.4	36	79	11	112	47	8	3	40	1.51

Tables:   1

The End!