Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008314.1 Hibiscus syriacus cultivar Beakdansim tig00111008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2414839
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 10
Found at i:804 original size:31 final size:31
Alignment explanation
Indices: 768--827 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
758 AACTTAAAAG
* *
768 AGTTTTGCAATACTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
799 AGTTTTACAATACTGAAATTTAAATAATT
1 AGTTTTACAATACTGAAATTTAAATAATT
828 CATACAACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:1335 original size:19 final size:19
Alignment explanation
Indices: 1288--1348 Score: 65
Period size: 17 Copynumber: 3.3 Consensus size: 19
1278 AACTTAAATC
* *
1288 AAAATAATTAAAATAAATAT
1 AAAATAATT-TAATATATAT
1308 AAAAT--TTTAATATATAT
1 AAAATAATTTAATATATAT
1325 AAAATAATTT-ATATGATAT
1 AAAATAATTTAATAT-ATAT
1344 AAAAT
1 AAAAT
1349 TAAATATCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
17 13 0.36
18 6 0.17
19 12 0.33
20 5 0.14
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAATAATTTAATATATAT
Found at i:1381 original size:14 final size:14
Alignment explanation
Indices: 1364--1452 Score: 75
Period size: 14 Copynumber: 6.8 Consensus size: 14
1354 ATCTATAATA
1364 TAATATTAAAAAAT
1 TAATATTAAAAAAT
*
1378 TAATATT---TAAT
1 TAATATTAAAAAAT
*
1389 TTAT-TTAAAAAAT
1 TAATATTAAAAAAT
1402 TAATATT--AAAAT
1 TAATATTAAAAAAT
* *
1414 TAATATCTATAATA-
1 TAATAT-TAAAAAAT
1428 TAATATTAAAAAAT
1 TAATATTAAAAAAT
*
1442 TAAAATTAAAA
1 TAATATTAAAA
1453 TTAAAATCAA
Statistics
Matches: 59, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
10 2 0.03
11 6 0.10
12 11 0.19
13 12 0.20
14 25 0.42
15 3 0.05
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.40
Consensus pattern (14 bp):
TAATATTAAAAAAT
Found at i:1415 original size:6 final size:6
Alignment explanation
Indices: 1397--1480 Score: 55
Period size: 6 Copynumber: 13.5 Consensus size: 6
1387 ATTTATTTAA
* * * *
1397 AAAATT AATATT AAAATT AATATCT ATAATAT AATATT AAAAAATT AAAATT
1 AAAATT AAAATT AAAATT AAAAT-T AAAAT-T AAAATT --AAAATT AAAATT
* *
1449 AAAATT AAAA-T CAAA-T ATAATAT AAAATT AAA
1 AAAATT AAAATT AAAATT AAAAT-T AAAATT AAA
1481 TATAAAACCT
Statistics
Matches: 60, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
5 7 0.12
6 35 0.58
7 13 0.22
8 5 0.08
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (6 bp):
AAAATT
Found at i:1443 original size:40 final size:40
Alignment explanation
Indices: 1364--1475 Score: 130
Period size: 40 Copynumber: 2.9 Consensus size: 40
1354 ATCTATAATA
*
1364 TAATATTAAAAAATTAATAT-T-TAAT-TTAT-TTAAAAAAT
1 TAATATT--AAAATTAATATCTATAATATAATATTAAAAAAT
1402 TAATATTAAAATTAATATCTATAATATAATATTAAAAAAT
1 TAATATTAAAATTAATATCTATAATATAATATTAAAAAAT
* *
1442 TAAAATTAAAATTAAAATC-A-AATATAATA-TAAAA
1 TAATATTAAAATTAATATCTATAATATAATATTAAAA
1476 TTAAATATAA
Statistics
Matches: 67, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
36 11 0.16
37 6 0.09
38 20 0.30
39 4 0.06
40 26 0.39
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (40 bp):
TAATATTAAAATTAATATCTATAATATAATATTAAAAAAT
Found at i:1483 original size:64 final size:64
Alignment explanation
Indices: 1335--1483 Score: 198
Period size: 64 Copynumber: 2.3 Consensus size: 64
1325 AAAATAATTT
* * * *
1335 ATATGATATAAAATTAAATATCTATAATATAATATTAAAAAATTAATATTTAATTTATTTAAAAA
1 ATATAATATAAAATTAAATATCTATAATATAATATTAAAAAATTAATAATTAA-TAATTAAAAAA
1400 AT-TAATATTAAAATT-AATATCTATAATATAATATTAAAAAATTAA-AATTAA-AATTAAAATC
1 ATATAATA-TAAAATTAAATATCTATAATATAATATTAAAAAATTAATAATTAATAATTAAAA--
1461 AA
63 AA
1463 ATATAATATAAAATTAAATAT
1 ATATAATATAAAATTAAATAT
1484 AAAACCTCTT
Statistics
Matches: 75, Mismatches: 4, Indels: 11
0.83 0.04 0.12
Matches are distributed among these distances:
61 6 0.08
63 16 0.21
64 44 0.59
65 9 0.12
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.39
Consensus pattern (64 bp):
ATATAATATAAAATTAAATATCTATAATATAATATTAAAAAATTAATAATTAATAATTAAAAAA
Found at i:5239 original size:12 final size:12
Alignment explanation
Indices: 5222--5246 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
5212 AAATCTCGTC
5222 CCCTCCCCTCCT
1 CCCTCCCCTCCT
5234 CCCTCCCCTCCT
1 CCCTCCCCTCCT
5246 C
1 C
5247 ATCATATGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.76, G:0.00, T:0.24
Consensus pattern (12 bp):
CCCTCCCCTCCT
Found at i:5426 original size:19 final size:21
Alignment explanation
Indices: 5404--5445 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 21
5394 TTTTTTAAGA
5404 TTTTAAAAA-AAATTA-ATTT
1 TTTTAAAAATAAATTATATTT
5423 TTTTAAAAATAAATTATATTT
1 TTTTAAAAATAAATTATATTT
5444 TT
1 TT
5446 AAGTTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 9 0.43
20 6 0.29
21 6 0.29
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TTTTAAAAATAAATTATATTT
Found at i:9482 original size:6 final size:6
Alignment explanation
Indices: 9471--9497 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
9461 ATGTATACTG
9471 AAAGGA AAAGGA AAAGGA AAAGGA AAA
1 AAAGGA AAAGGA AAAGGA AAAGGA AAA
9498 AAAATTCCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (6 bp):
AAAGGA
Found at i:13428 original size:22 final size:21
Alignment explanation
Indices: 13373--13429 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 21
13363 CTTAAACTCT
13373 AATATATTAAT-AAATCAAAAA
1 AATATA-TAATAAAATCAAAAA
* *
13394 AATATTCAAAATAAAATTAATAAA
1 AATA-T-ATAATAAAATCAA-AAA
13418 AATATATAATAA
1 AATATATAATAA
13430 CTTAAGGACT
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
21 4 0.14
22 10 0.34
23 8 0.28
24 7 0.24
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (21 bp):
AATATATAATAAAATCAAAAA
Found at i:14091 original size:35 final size:35
Alignment explanation
Indices: 14045--14156 Score: 145
Period size: 35 Copynumber: 3.2 Consensus size: 35
14035 TAAACAATCC
* *
14045 TCAATTTCATTCTAAACCCTAATTTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
14080 TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
** * * *
14115 TCAATTAAAATT-TAAACCCCAAATTCTAAAATACT
1 TCAATT-TCATTCTAAACCCTAAATTCCAAAATAAT
14150 TCAATTT
1 TCAATTT
14157 AAGGTTTAGA
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
35 65 0.96
36 3 0.04
ACGTcount: A:0.42, C:0.21, G:0.01, T:0.36
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
Found at i:14863 original size:3 final size:3
Alignment explanation
Indices: 14855--14897 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
14845 TACTTTACCC
*
14855 TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
14898 CTTTCCATCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:17582 original size:114 final size:114
Alignment explanation
Indices: 17382--17610 Score: 406
Period size: 114 Copynumber: 2.0 Consensus size: 114
17372 TCATAGTTTT
*
17382 ATATTTTGAGAGTTAATCCCCATGAAAGTATTGGTGAGTGGTGAATTTCTGGCTTTGCAAAATCT
1 ATATTTTGAGAGTTAATCCCCATGAAAGTATTGGTGAGTGGTGAATTTCTAGCTTTGCAAAATCT
* *
17447 ACATTGCGTGAGATGTATGTTCCATGGTTTATTAGGTTCAAATGTTAAC
66 ACATTGCATGAGATGTATGTTCCATGGTTTATCAGGTTCAAATGTTAAC
*
17496 ATATTTTGGGAGTTAATCCCCATGAAAGTATTGGTGAGTGGTGAATTTCTAGCTTTGCAAAATCT
1 ATATTTTGAGAGTTAATCCCCATGAAAGTATTGGTGAGTGGTGAATTTCTAGCTTTGCAAAATC-
17561 TA-ATTGCATGAGATGTATGTTCCATGGTTTATCAGGTTCAAATGTTAAC
65 TACATTGCATGAGATGTATGTTCCATGGTTTATCAGGTTCAAATGTTAAC
17610 A
1 A
17611 GTTGCTTCAT
Statistics
Matches: 110, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
114 108 0.98
115 2 0.02
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (114 bp):
ATATTTTGAGAGTTAATCCCCATGAAAGTATTGGTGAGTGGTGAATTTCTAGCTTTGCAAAATCT
ACATTGCATGAGATGTATGTTCCATGGTTTATCAGGTTCAAATGTTAAC
Found at i:23560 original size:39 final size:38
Alignment explanation
Indices: 23504--23604 Score: 120
Period size: 39 Copynumber: 2.6 Consensus size: 38
23494 ATAATTTAGA
*
23504 AATTATTTCAC-TCTAACATTCTAAGTT-TCTAATTTCTT
1 AATTATTTCACAT-TAACATTCTAAATTCT-TAATTTCTT
23542 AAATT-TTGTCATCA-TAACATTCTAAATTCTTAATTTCTT
1 -AATTATT-TCA-CATTAACATTCTAAATTCTTAATTTCTT
23581 AATTATTTCACATTAACATTCTAA
1 AATTATTTCACATTAACATTCTAA
23605 TTTTTTTAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 13
0.80 0.01 0.19
Matches are distributed among these distances:
37 2 0.04
38 20 0.36
39 31 0.56
40 2 0.04
ACGTcount: A:0.34, C:0.17, G:0.02, T:0.48
Consensus pattern (38 bp):
AATTATTTCACATTAACATTCTAAATTCTTAATTTCTT
Found at i:23796 original size:2 final size:2
Alignment explanation
Indices: 23789--23822 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
23779 AAAAGTTTCC
23789 TA TA TA TA TA TA TA TA TA TA TA T- TA -A TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23823 ATTCAAAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:25746 original size:57 final size:57
Alignment explanation
Indices: 25655--25817 Score: 245
Period size: 57 Copynumber: 2.9 Consensus size: 57
25645 TTGATCTCAA
* *
25655 ACTTTGTCTTCTTGAACTGCTTACTCTGTCTGCATTTAACCCATTGCTCAATACAAG
1 ACTTTGACTTCTTGAACTGCTTACACTGTCTGCATTTAACCCATTGCTCAATACAAG
* * * *
25712 ACTTTGACTTCTTGAACTGCTTACACTGTTTGCATTTAACACATTGCGCGATACAAG
1 ACTTTGACTTCTTGAACTGCTTACACTGTCTGCATTTAACCCATTGCTCAATACAAG
* * *
25769 ACTTTGCCTTCTTGAACTGCTAACACTGTCTACATTTAACCCATTGCTC
1 ACTTTGACTTCTTGAACTGCTTACACTGTCTGCATTTAACCCATTGCTC
25818 GACGCAAGCT
Statistics
Matches: 94, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 94 1.00
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (57 bp):
ACTTTGACTTCTTGAACTGCTTACACTGTCTGCATTTAACCCATTGCTCAATACAAG
Found at i:32797 original size:964 final size:962
Alignment explanation
Indices: 30870--32799 Score: 3443
Period size: 964 Copynumber: 2.0 Consensus size: 962
30860 TTTATTTAAA
30870 TTTATTAAGACTTAATACAAAGATCATTAAGTCACGTTTCAATGTTACTTTTTAACTGCCTAAGT
1 TTTATTAAGACTTAATACAAAGATCATTAAGTCACGTTTCAATGTTACTTTTTAACTGCCTAAGT
30935 CATAATTTCAATGCTACTCTTTTGGCTATGTTACGTTTATATTTTTTTATTAAAAAATCTAATTT
66 CATAATTTCAATGCTACTCTTTTGGCTATGTTACGTTTATATTTTTTTATTAAAAAATCTAATTT
31000 CTAAAATTAACATAATACCAAAAAACCTAAATTCCTCTTGCTACCGTTGTTGTTGGTGCCAATGC
131 CTAAAATTAACATAATACCAAAAAACCTAAATTCCTCTTGCTACCGTTGTTGTTGGTGCCAATGC
31065 ACTAAGAGTATAACTCTCTGGTCGTTTCAAGTAGCGTGGGATTAAATGCCAAATGGCCACTCAAA
196 ACTAAGAGTATAACTCTCTGGTCGTTTCAAGTAGCGTGGGATTAAATGCCAAATGGCCACTCAAA
*
31130 TCATTACGGTTTTTATTAATAGTCGTTGCAGTGTAGACACTTAAAAGAGTAAAGTTGTAAGTGTT
261 TCATTACGGTTTTTATTAATAGTCGTTGCAGTGTAGACACTTAAAAGAGTAAAGTTGGAAGTGTT
31195 AGACACTTACTTTGATAAAAAAAAATCTTTAGATACTTAAAATTAATTAGGATAAATTTGGATAT
326 AGACACTTA--TTGATAAAAAAAAATCTTTAGATACTTAAAATTAATTAGGATAAATTTGGATAT
31260 TTACTTTTCTATTAAGCCTGTTTGTTTTTGGCTCAGCCGTTGTTGTGTTATATATATATATAACT
389 TTACTTTTCTATTAAGCC-GTTTGTTTTTGGCTCAGCCGTTGTTGTGTTATATATATATATAACT
31325 TTGATTGCATGAAAGTGAGCCAATTTGTAGCGTTCGAATAATCTTTCTTATCTTTGATTTTCCTT
453 TTGATTGCATGAAAGTGAGCCAATTTGTAGCGTTCGAATAATCTTTCTTATCTTTGATTTTCCTT
*
31390 CAGTCATCGTATAATTGTTCTATACTATTAAATTGAGTAAGACTCATTTGATTAAGTTCATTGAC
518 CAGTCATCGTATAATTGTTCTATACTATTAAATTGAGTAAGACTCATTCGATTAAGTTCATTGAC
*
31455 AAACTGTTACTTGTTTTTTTTTTGTTGTTGGCTTACCCATTGGTTACTCTGATATTGTTTCTGGT
583 AAACTGTTACTTGTTTTTTTTTGGTTGTTGGCTTACCCATTGGTTACTCTGATATTGTTTCTGGT
31520 CGGTTATGGTGGCCGAATACAGTGCAAGGTTTGCATGCAAACATTCATGTGTACCACAACAGAAG
648 CGGTTATGGTGGCCGAATACAGTGCAAGGTTTGCATGCAAACATTCATGTGTACCACAACAGAAG
31585 GAAGTGCCGGGAGCATGCCGAGGCAAGGCATCCTAAATCCGATCTATACGCATGTTTTCCTCATC
713 GAAGTGCCGGGAGCATGCCGAGGCAAGGCATCCTAAATCCGATCTATACGCATGTTTTCCTCATC
31650 TTAGAAAGTAGCACATCGAACTGGGGAAGTTGATACAGCTTGTAGCATGCGTATATCTTGTACCT
778 TTAGAAAGTAGCACATCGAACTGGGGAAGTTGATACAGCTTGTAGCATGCGTATATCTTGTACCT
31715 TGGTTATGTGTGAATTAGTTCCTTAAAATTTCTTTCACACTGTAAGCTCGATGATTTTAATGTTG
843 TGGTTA-GTGTGAATTAGTTCCTTAAAATTTCTTTCACACTGTAAGCTCGATGATTTTAATGTTG
31780 CAATTGTCATGATGTTTGGTCACGGTGTCGGTTGAATCGACTCGAACTGCTACTTG
907 CAATTGTCATGATGTTTGGTCACGGTGTCGGTTGAATCGACTCGAACTGCTACTTG
31836 TTTATTAAGACTTAATACAAAGATCATTAAGTCACGTTTTCAATGTTACTTTTTAACTGCCTAAG
1 TTTATTAAGACTTAATACAAAGATCATTAAGTCACG-TTTCAATGTTACTTTTTAACTGCCTAAG
31901 TCAT-ATTTCAATGCTACTC-TTTGGCTATGTTACGTTTATATTTTTTTATTAAAAAATCTAATT
65 TCATAATTTCAATGCTACTCTTTTGGCTATGTTACGTTTATATTTTTTTATTAAAAAATCTAATT
31964 TCTAAAATTAACATAATACC-AAAAACCTAAATTCCTCTTGCTACCGTTGTTGTGTTGGTGCCAA
130 TCTAAAATTAACATAATACCAAAAAACCTAAATTCCTCTTGCTACCGTTG-T-TGTTGGTGCCAA
32028 TGCACTAAATAGAGTATAACTCTTCT-GTCGTTTCAAGTAGCGTTGGGATTAAATGCCAAATGGC
193 TGCACT--A-AGAGTATAACTC-TCTGGTCGTTTCAAGTAGCG-TGGGATTAAATGCCAAATGGC
32092 CACTCAAATCATTACGGTTTTTATTAATAGTCGTTGCAGTGTAGACACTTAAAAGAGTAAAGTTG
253 CACTCAAATCATTACGGTTTTTATTAATAGTCGTTGCAGTGTAGACACTTAAAAGAGTAAAGTTG
32157 GAAGTGTTAGACAC---TTGATAAAAAAAAAATCTTTAGATACTTAAAATTAATTTAGGATAAAA
318 GAAGTGTTAGACACTTATTGAT-AAAAAAAAATCTTTAGATACTTAAAATTAA-TTAGGAT-AAA
32219 TTTGGATATTTACTTTTCTATTTAAGCC-TTTGTTTTTGGCTCAGCCGTTGTTGTG-T-TATATA
380 TTTGGATATTTACTTTTCTA-TTAAGCCGTTTGTTTTTGGCTCAGCCGTTGTTGTGTTATATATA
32281 TATATAACTTTGA-TGCATGAAAGTGAAGCCAATTTGTAGCGTTCGAATAATCTTTCTTATCTTT
444 TATATAACTTTGATTGCATGAAAGTG-AGCCAATTTGTAGCGTTCGAATAATCTTTCTTATCTTT
32345 GATTTT-CTTCAGTCATCGTATAATTAGTTCTATAC-ATTAAATTGAGTTAAGACTCATTCGATT
508 GATTTTCCTTCAGTCATCGTATAATT-GTTCTATACTATTAAATTGAG-TAAGACTCATTCGATT
32408 AAGTTCATTGACAGAAC-GTTACTTG-TTTTTTTTGGTTGTTGGCTTACCCATTGGTTACTCTGA
571 AAGTTCATTGACA-AACTGTTACTTGTTTTTTTTTGGTTGTTGGCTTACCCATTGGTTACTCTGA
32471 TATTGTTTTCTGGTCGGTTATGGTGGCCG-ATACAGTGCAAGGTTTGCATGCAAACATTCATGTG
635 TATTG-TTTCTGGTCGGTTATGGTGGCCGAATACAGTGCAAGGTTTGCATGCAAACATTCATGTG
32535 TACCACAACAGAAGTGAAGTGCCGGGAGCATG-CGAGGCAAGGCATCCTAAATCCGATCTATACG
699 TACCACAACAGAAG-GAAGTGCCGGGAGCATGCCGAGGCAAGGCATCCTAAATCCGATCTATACG
32599 CATGTTTTCCTCATCTTAGAAAGTAGCACATCGAACT-GGGAAGTTGATACAGCTTGTAGCATGC
763 CATGTTTTCCTCATCTTAGAAAGTAGCACATCGAACTGGGGAAGTTGATACAGCTTGTAGCATGC
32663 GTATATCTTGT-CCTTGGTTA-TGTGAATTAGTTCCTTAAAATTTCTTTCACAAGCCTGTAAGCT
828 GTATATCTTGTACCTTGGTTAGTGTGAATTAGTTCCTTAAAATTTCTTTCAC-A--CTGTAAGCT
32726 CGATGA-TTTAATGTTGCAATTGTCATGATGTTTGGTCACGGATGTCGGTTGAATCGACTCGAAC
890 CGATGATTTTAATGTTGCAATTGTCATGATGTTTGGTCACGG-TGTCGGTTGAATCGACTCGAAC
32790 TTGCTACTTG
954 -TGCTACTTG
32800 ATTGGGGTTA
Statistics
Matches: 938, Mismatches: 3, Indels: 48
0.95 0.00 0.05
Matches are distributed among these distances:
960 30 0.03
961 1 0.00
962 44 0.05
963 75 0.08
964 240 0.26
965 218 0.23
966 103 0.11
967 66 0.07
968 24 0.03
969 35 0.04
970 102 0.11
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (962 bp):
TTTATTAAGACTTAATACAAAGATCATTAAGTCACGTTTCAATGTTACTTTTTAACTGCCTAAGT
CATAATTTCAATGCTACTCTTTTGGCTATGTTACGTTTATATTTTTTTATTAAAAAATCTAATTT
CTAAAATTAACATAATACCAAAAAACCTAAATTCCTCTTGCTACCGTTGTTGTTGGTGCCAATGC
ACTAAGAGTATAACTCTCTGGTCGTTTCAAGTAGCGTGGGATTAAATGCCAAATGGCCACTCAAA
TCATTACGGTTTTTATTAATAGTCGTTGCAGTGTAGACACTTAAAAGAGTAAAGTTGGAAGTGTT
AGACACTTATTGATAAAAAAAAATCTTTAGATACTTAAAATTAATTAGGATAAATTTGGATATTT
ACTTTTCTATTAAGCCGTTTGTTTTTGGCTCAGCCGTTGTTGTGTTATATATATATATAACTTTG
ATTGCATGAAAGTGAGCCAATTTGTAGCGTTCGAATAATCTTTCTTATCTTTGATTTTCCTTCAG
TCATCGTATAATTGTTCTATACTATTAAATTGAGTAAGACTCATTCGATTAAGTTCATTGACAAA
CTGTTACTTGTTTTTTTTTGGTTGTTGGCTTACCCATTGGTTACTCTGATATTGTTTCTGGTCGG
TTATGGTGGCCGAATACAGTGCAAGGTTTGCATGCAAACATTCATGTGTACCACAACAGAAGGAA
GTGCCGGGAGCATGCCGAGGCAAGGCATCCTAAATCCGATCTATACGCATGTTTTCCTCATCTTA
GAAAGTAGCACATCGAACTGGGGAAGTTGATACAGCTTGTAGCATGCGTATATCTTGTACCTTGG
TTAGTGTGAATTAGTTCCTTAAAATTTCTTTCACACTGTAAGCTCGATGATTTTAATGTTGCAAT
TGTCATGATGTTTGGTCACGGTGTCGGTTGAATCGACTCGAACTGCTACTTG
Found at i:42251 original size:31 final size:30
Alignment explanation
Indices: 42207--42265 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
42197 GTGATGAATA
* * *
42207 TAATAATCGATAACATAAGTGACCAAAATT
1 TAATAATAGATAACATAAATAACCAAAATT
42237 TAATAAATAGATAACATAAATAACCAAAA
1 TAAT-AATAGATAACATAAATAACCAAAA
42266 CGTAATATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 4 0.16
31 21 0.84
ACGTcount: A:0.58, C:0.12, G:0.07, T:0.24
Consensus pattern (30 bp):
TAATAATAGATAACATAAATAACCAAAATT
Found at i:42272 original size:31 final size:31
Alignment explanation
Indices: 42207--42272 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
42197 GTGATGAATA
* * * **
42207 TAAT-AATCGATAACATAAGTGACCAAAATT
1 TAATAAATAGATAACATAAATAACCAAAACG
42237 TAATAAATAGATAACATAAATAACCAAAACG
1 TAATAAATAGATAACATAAATAACCAAAACG
42268 TAATA
1 TAATA
42273 TTTTTAAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 4 0.13
31 26 0.87
ACGTcount: A:0.56, C:0.12, G:0.08, T:0.24
Consensus pattern (31 bp):
TAATAAATAGATAACATAAATAACCAAAACG
Found at i:45101 original size:2 final size:2
Alignment explanation
Indices: 45094--45118 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
45084 GCTGTTTCAG
45094 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
45119 TACGCACTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:57221 original size:20 final size:20
Alignment explanation
Indices: 57176--57221 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
57166 TTAATATATT
*
57176 ATTTA-TTATTCATTGTATA
1 ATTTATTTATTCATTGTAAA
57195 ATATTATTTATT-ATTGTAAAA
1 AT-TTATTTATTCATTGT-AAA
57216 ATTTAT
1 ATTTAT
57222 ATGTGGAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 2 0.09
20 12 0.52
21 9 0.39
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (20 bp):
ATTTATTTATTCATTGTAAA
Found at i:59433 original size:7 final size:7
Alignment explanation
Indices: 59421--59448 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
59411 CACCCCCTCT
59421 CTCAACC
1 CTCAACC
59428 CTCAACC
1 CTCAACC
59435 CTCAACC
1 CTCAACC
59442 CTCAACC
1 CTCAACC
59449 GGTAATCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.57, G:0.00, T:0.14
Consensus pattern (7 bp):
CTCAACC
Found at i:61417 original size:21 final size:22
Alignment explanation
Indices: 61384--61426 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
61374 GTACAAAATG
*
61384 GTATTGATAA-TTTAAAGTTTA
1 GTATAGATAATTTTAAAGTTTA
*
61405 GTATAGATTATTTTAAAGTTTA
1 GTATAGATAATTTTAAAGTTTA
61427 AGAGCTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (22 bp):
GTATAGATAATTTTAAAGTTTA
Found at i:66358 original size:26 final size:27
Alignment explanation
Indices: 66310--66360 Score: 95
Period size: 26 Copynumber: 1.9 Consensus size: 27
66300 TATGATGCGA
66310 GTCCTTGTGATCTTATATCAAAGTTAG
1 GTCCTTGTGATCTTATATCAAAGTTAG
66337 GTCCTTGTGAT-TTATATCAAAGTT
1 GTCCTTGTGATCTTATATCAAAGTT
66361 GTGCATGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.43
Consensus pattern (27 bp):
GTCCTTGTGATCTTATATCAAAGTTAG
Found at i:66474 original size:27 final size:27
Alignment explanation
Indices: 66436--66489 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
66426 TGTTTATAGC
*
66436 GAGTCGTTAGTTAGTTGAATTGTGCTT
1 GAGTCGTTAGTTAGTTGAATCGTGCTT
*
66463 GAGTCGTTAGTTAGTTGAGTCGTGCTT
1 GAGTCGTTAGTTAGTTGAATCGTGCTT
66490 AACTTGTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.09, G:0.31, T:0.43
Consensus pattern (27 bp):
GAGTCGTTAGTTAGTTGAATCGTGCTT
Found at i:66596 original size:15 final size:15
Alignment explanation
Indices: 66576--66610 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
66566 TCATTGAATC
66576 TAATTTTTATATAAA
1 TAATTTTTATATAAA
*
66591 TAATTTTTATTTAAA
1 TAATTTTTATATAAA
66606 TAATT
1 TAATT
66611 AGAATCTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TAATTTTTATATAAA
Found at i:80266 original size:16 final size:14
Alignment explanation
Indices: 80230--80258 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
80220 CTATCAATAT
80230 TCTTATAATTTATA
1 TCTTATAATTTATA
80244 TCTTATAATTT-TA
1 TCTTATAATTTATA
80257 TC
1 TC
80259 CTCTTATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.27
14 11 0.73
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.59
Consensus pattern (14 bp):
TCTTATAATTTATA
Found at i:80518 original size:23 final size:23
Alignment explanation
Indices: 80492--80552 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
80482 CTCGTATAAA
*
80492 TGCACCGAAGTGCTACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
80515 TGCACCGAAGTGCCGCGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
80538 TGCACCGAATTGCCA
1 TGCACCGAAGTGCCA
80553 TATAAAATGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.20
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:91943 original size:22 final size:20
Alignment explanation
Indices: 91905--91947 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
91895 CATAATTATT
91905 TAAAAAATTAAATAAAAATA
1 TAAAAAATTAAATAAAAATA
*
91925 TAAAAATATTTAATAAAAA-A
1 TAAAAA-ATTAAATAAAAATA
91945 TAA
1 TAA
91948 TTTTTTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
TAAAAAATTAAATAAAAATA
Found at i:93966 original size:17 final size:17
Alignment explanation
Indices: 93944--93977 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
93934 AAGAGAAAGC
*
93944 AGTAAAACGTTTATTGA
1 AGTAAAACATTTATTGA
93961 AGTAAAACATTTATTGA
1 AGTAAAACATTTATTGA
93978 TACTCTGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (17 bp):
AGTAAAACATTTATTGA
Found at i:94211 original size:36 final size:36
Alignment explanation
Indices: 94155--94298 Score: 146
Period size: 36 Copynumber: 3.8 Consensus size: 36
94145 AGATGAACAA
*
94155 TTGAGTCGAAAGTGCTGATGCTTCCTTCCGTTCACT
1 TTGAATCGAAAGTGCTGATGCTTCCTTCCGTTCACT
*
94191 TTGAATCGAAAGTG-TCGATGCTTTCGATGCTTCCTTTCATTCTT
1 TTGAATCGAAAGTGCT-GATGC-TTC----CTTCCGTTCA--C-T
* *
94235 CTTGAACCGAAAGTGCCGATGCTTCCTTCCGTTCACT
1 -TTGAATCGAAAGTGCTGATGCTTCCTTCCGTTCACT
*
94272 TTGAATCGAAAGTGCTTATGCTTCCTT
1 TTGAATCGAAAGTGCTGATGCTTCCTT
94299 TCGTACTTCT
Statistics
Matches: 89, Mismatches: 8, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
35 1 0.01
36 42 0.47
37 4 0.04
38 1 0.01
40 9 0.10
41 9 0.10
43 1 0.01
44 4 0.04
45 18 0.20
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (36 bp):
TTGAATCGAAAGTGCTGATGCTTCCTTCCGTTCACT
Found at i:95503 original size:17 final size:17
Alignment explanation
Indices: 95481--95514 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
95471 AAGAGAAAGC
*
95481 AGTAAAACGTTTATTGA
1 AGTAAAACATTTATTGA
95498 AGTAAAACATTTATTGA
1 AGTAAAACATTTATTGA
95515 TACTCTGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (17 bp):
AGTAAAACATTTATTGA
Found at i:96208 original size:12 final size:12
Alignment explanation
Indices: 96191--96215 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
96181 GCCTTCGGAT
96191 CCTTCCATTTGA
1 CCTTCCATTTGA
96203 CCTTCCATTTGA
1 CCTTCCATTTGA
96215 C
1 C
96216 TCCATAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.36, G:0.08, T:0.40
Consensus pattern (12 bp):
CCTTCCATTTGA
Found at i:96525 original size:17 final size:17
Alignment explanation
Indices: 96503--96542 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
96493 TATTTGTGTA
96503 TTAAATTCATAAAT-AAT
1 TTAAATTCA-AAATGAAT
*
96520 TTAAATTTAAAATGAAT
1 TTAAATTCAAAATGAAT
96537 TTAAAT
1 TTAAAT
96543 AAAGTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (17 bp):
TTAAATTCAAAATGAAT
Found at i:100103 original size:30 final size:30
Alignment explanation
Indices: 100020--100138 Score: 98
Period size: 31 Copynumber: 3.9 Consensus size: 30
100010 TAACCTAAGG
100020 GAACATCTTAGGGCCTG-AGAGCCTACCCAA
1 GAACATCTTAGGGCC-GCAGAGCCTACCCAA
* * ** * *
100050 GATAGAT-TTCGGGGCCGTGGGGCCTACCTAA
1 GA-ACATCTT-AGGGCCGCAGAGCCTACCCAA
* *
100081 GAACATCTTAGGGCCGCAGGGCCTACCCGA
1 GAACATCTTAGGGCCGCAGAGCCTACCCAA
* *
100111 GAATGATCTCAGGGCCGCAGAGCCTACC
1 GAA-CATCTTAGGGCCGCAGAGCCTACC
100139 TAAGTGTCAC
Statistics
Matches: 70, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
30 27 0.39
31 43 0.61
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.17
Consensus pattern (30 bp):
GAACATCTTAGGGCCGCAGAGCCTACCCAA
Found at i:100126 original size:61 final size:61
Alignment explanation
Indices: 100020--100142 Score: 151
Period size: 61 Copynumber: 2.0 Consensus size: 61
100010 TAACCTAAGG
* * ** *
100020 GAACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCGGGGCCGTGGGGCCTACCTAA
1 GAACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAA
* *
100081 GAACATCTTAGGGCC-GCAGGGCCTACCCGAGA-ATGATCTCAGGGCCGCAGAGCCTACCTAA
1 GAACATCTTAGGGCCTG-AGAGCCTACCCAAGATA-GATCTCAGGGCCGCAGAGCCTACCTAA
100142 G
1 G
100143 TGTCACATTA
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
60 2 0.04
61 51 0.96
ACGTcount: A:0.25, C:0.28, G:0.29, T:0.17
Consensus pattern (61 bp):
GAACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAA
Found at i:101677 original size:18 final size:18
Alignment explanation
Indices: 101654--101688 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
101644 TTCCATCCGG
*
101654 TCTTATTATTTAATTCAA
1 TCTTATCATTTAATTCAA
*
101672 TCTTATCATTTACTTCA
1 TCTTATCATTTAATTCA
101689 GTCCTTTCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (18 bp):
TCTTATCATTTAATTCAA
Found at i:103061 original size:14 final size:14
Alignment explanation
Indices: 103062--103109 Score: 87
Period size: 14 Copynumber: 3.4 Consensus size: 14
103052 TCAAACGGCT
*
103062 CGGCTCAGCTCAAA
1 CGGCTCGGCTCAAA
103076 CGGCTCGGCTCAAA
1 CGGCTCGGCTCAAA
103090 CGGCTCGGCTCAAA
1 CGGCTCGGCTCAAA
103104 CGGCTC
1 CGGCTC
103110 CTCATGCTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.21, C:0.38, G:0.27, T:0.15
Consensus pattern (14 bp):
CGGCTCGGCTCAAA
Found at i:103068 original size:33 final size:33
Alignment explanation
Indices: 103024--103109 Score: 86
Period size: 33 Copynumber: 2.6 Consensus size: 33
103014 CGGCTCGGCT
* *
103024 CGGCTCAGCTCAAACGGCTTGGCTCAGCTCAAA
1 CGGCTCGGCTCAAACGGCTCGGCTCAGCTCAAA
* * * *
103057 CGGCTCGGCTC-AGC-TCAAACGGCTCGGCTCAAA
1 CGGCTCGGCTCAAACGGC--TCGGCTCAGCTCAAA
103090 CGGCTCGGCTCAAACGGCTC
1 CGGCTCGGCTCAAACGGCTC
103110 CTCATGCTTC
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
31 1 0.03
32 2 0.05
33 34 0.85
34 2 0.05
35 1 0.03
ACGTcount: A:0.21, C:0.36, G:0.27, T:0.16
Consensus pattern (33 bp):
CGGCTCGGCTCAAACGGCTCGGCTCAGCTCAAA
Found at i:103099 original size:38 final size:38
Alignment explanation
Indices: 102997--103100 Score: 115
Period size: 38 Copynumber: 2.7 Consensus size: 38
102987 GGTCAACAGT
*
102997 AAACGGCTCGG-TCTAGGCGGCTCGGCTCGGCTCAGCTC
1 AAACGGCTCGGCTC-AAGCGGCTCGGCTCGGCTCAGCTC
* * *
103035 AAACGGCTTGGCTC-AGC-TCAAACGGCTCGGCTCAGCTC
1 AAACGGCTCGGCTCAAGCGGC--TCGGCTCGGCTCAGCTC
*
103073 AAACGGCTCGGCTCAAACGGCTCGGCTC
1 AAACGGCTCGGCTCAAGCGGCTCGGCTC
103101 AAACGGCTCC
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
36 1 0.02
37 2 0.04
38 45 0.85
39 4 0.08
40 1 0.02
ACGTcount: A:0.18, C:0.35, G:0.30, T:0.17
Consensus pattern (38 bp):
AAACGGCTCGGCTCAAGCGGCTCGGCTCGGCTCAGCTC
Found at i:103100 original size:19 final size:19
Alignment explanation
Indices: 103019--103087 Score: 129
Period size: 19 Copynumber: 3.6 Consensus size: 19
103009 CTAGGCGGCT
103019 CGGCTCGGCTCAGCTCAAA
1 CGGCTCGGCTCAGCTCAAA
*
103038 CGGCTTGGCTCAGCTCAAA
1 CGGCTCGGCTCAGCTCAAA
103057 CGGCTCGGCTCAGCTCAAA
1 CGGCTCGGCTCAGCTCAAA
103076 CGGCTCGGCTCA
1 CGGCTCGGCTCA
103088 AACGGCTCGG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 48 1.00
ACGTcount: A:0.19, C:0.36, G:0.28, T:0.17
Consensus pattern (19 bp):
CGGCTCGGCTCAGCTCAAA
Found at i:105206 original size:32 final size:31
Alignment explanation
Indices: 105168--105243 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
105158 TCGGGGCCGT
*
105168 GGGCCTACCTAAGAACACATCTTAGGGCCGCA
1 GGGCCTACCTAAGAA-ACATCTCAGGGCCGCA
** **
105200 GGGCCTACCCGAGAATGATCTCAGGGCCGCA
1 GGGCCTACCTAAGAAACATCTCAGGGCCGCA
*
105231 GAGCCTACCTAAG
1 GGGCCTACCTAAG
105244 TGTCACATTA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
31 23 0.64
32 13 0.36
ACGTcount: A:0.26, C:0.32, G:0.28, T:0.14
Consensus pattern (31 bp):
GGGCCTACCTAAGAAACATCTCAGGGCCGCA
Found at i:105227 original size:62 final size:63
Alignment explanation
Indices: 105122--105243 Score: 151
Period size: 62 Copynumber: 2.0 Consensus size: 63
105112 ACCTAAGGGA
* * * *
105122 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCGGGGCCG-TGGGCCTACCTAAGAAC
1 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
* *
105184 ACATCTTAGGGCC-GCAGGGCCTACCCGAGA-ATGATCTCAGGGCCGCAGAGCCTACCTAAG
1 ACATCTTAGGGCCTG-AGAGCCTACCCAAGATA-GATCTCAGGGCCGCAGAGCCTACCTAAG
105244 TGTCACATTA
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
61 2 0.04
62 37 0.73
63 12 0.24
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.17
Consensus pattern (63 bp):
ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
Found at i:106777 original size:18 final size:18
Alignment explanation
Indices: 106754--106788 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
106744 TTCCATCCGG
*
106754 TCTTATTATTTAATTCAA
1 TCTTATCATTTAATTCAA
*
106772 TCTTATCATTTACTTCA
1 TCTTATCATTTAATTCA
106789 GTCCTTTCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (18 bp):
TCTTATCATTTAATTCAA
Found at i:108161 original size:14 final size:14
Alignment explanation
Indices: 108162--108209 Score: 87
Period size: 14 Copynumber: 3.4 Consensus size: 14
108152 TCAAACGGCT
*
108162 CGGCTCAGCTCAAA
1 CGGCTCGGCTCAAA
108176 CGGCTCGGCTCAAA
1 CGGCTCGGCTCAAA
108190 CGGCTCGGCTCAAA
1 CGGCTCGGCTCAAA
108204 CGGCTC
1 CGGCTC
108210 CTCATGCTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.21, C:0.38, G:0.27, T:0.15
Consensus pattern (14 bp):
CGGCTCGGCTCAAA
Found at i:108168 original size:33 final size:33
Alignment explanation
Indices: 108124--108209 Score: 86
Period size: 33 Copynumber: 2.6 Consensus size: 33
108114 CGGCTCGGCT
* *
108124 CGGCTCAGCTCAAACGGCTTGGCTCAGCTCAAA
1 CGGCTCGGCTCAAACGGCTCGGCTCAGCTCAAA
* * * *
108157 CGGCTCGGCTC-AGC-TCAAACGGCTCGGCTCAAA
1 CGGCTCGGCTCAAACGGC--TCGGCTCAGCTCAAA
108190 CGGCTCGGCTCAAACGGCTC
1 CGGCTCGGCTCAAACGGCTC
108210 CTCATGCTTC
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
31 1 0.03
32 2 0.05
33 34 0.85
34 2 0.05
35 1 0.03
ACGTcount: A:0.21, C:0.36, G:0.27, T:0.16
Consensus pattern (33 bp):
CGGCTCGGCTCAAACGGCTCGGCTCAGCTCAAA
Found at i:108199 original size:38 final size:38
Alignment explanation
Indices: 108097--108200 Score: 115
Period size: 38 Copynumber: 2.7 Consensus size: 38
108087 GGTCAACAGT
*
108097 AAACGGCTCGG-TCTAGGCGGCTCGGCTCGGCTCAGCTC
1 AAACGGCTCGGCTC-AAGCGGCTCGGCTCGGCTCAGCTC
* * *
108135 AAACGGCTTGGCTC-AGC-TCAAACGGCTCGGCTCAGCTC
1 AAACGGCTCGGCTCAAGCGGC--TCGGCTCGGCTCAGCTC
*
108173 AAACGGCTCGGCTCAAACGGCTCGGCTC
1 AAACGGCTCGGCTCAAGCGGCTCGGCTC
108201 AAACGGCTCC
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
36 1 0.02
37 2 0.04
38 45 0.85
39 4 0.08
40 1 0.02
ACGTcount: A:0.18, C:0.35, G:0.30, T:0.17
Consensus pattern (38 bp):
AAACGGCTCGGCTCAAGCGGCTCGGCTCGGCTCAGCTC
Found at i:108200 original size:19 final size:19
Alignment explanation
Indices: 108119--108187 Score: 129
Period size: 19 Copynumber: 3.6 Consensus size: 19
108109 CTAGGCGGCT
108119 CGGCTCGGCTCAGCTCAAA
1 CGGCTCGGCTCAGCTCAAA
*
108138 CGGCTTGGCTCAGCTCAAA
1 CGGCTCGGCTCAGCTCAAA
108157 CGGCTCGGCTCAGCTCAAA
1 CGGCTCGGCTCAGCTCAAA
108176 CGGCTCGGCTCA
1 CGGCTCGGCTCA
108188 AACGGCTCGG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 48 1.00
ACGTcount: A:0.19, C:0.36, G:0.28, T:0.17
Consensus pattern (19 bp):
CGGCTCGGCTCAGCTCAAA
Found at i:120653 original size:6 final size:6
Alignment explanation
Indices: 120642--120700 Score: 63
Period size: 5 Copynumber: 10.0 Consensus size: 6
120632 AATTTTGGCT
120642 TTTTTG TTTTTG -TTTTG TTTTTG CTCTTTT- TTTTT- TTTTT- TTTTTG
1 TTTTTG TTTTTG TTTTTG TTTTTG -T-TTTTG TTTTTG TTTTTG TTTTTG
120688 TTTTTTG TTTTTG
1 -TTTTTG TTTTTG
120701 AAAAAAATAG
Statistics
Matches: 48, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
5 19 0.40
6 18 0.38
7 7 0.15
8 4 0.08
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.85
Consensus pattern (6 bp):
TTTTTG
Found at i:120659 original size:11 final size:11
Alignment explanation
Indices: 120643--120698 Score: 57
Period size: 11 Copynumber: 5.4 Consensus size: 11
120633 ATTTTGGCTT
120643 TTTTGTTTTTG
1 TTTTGTTTTTG
120654 TTTTGTTTTTG
1 TTTTGTTTTTG
* *
120665 CTCT-TTTTT-
1 TTTTGTTTTTG
120674 TTTT-TTTTT-
1 TTTTGTTTTTG
120683 TTTTGTTTTTTG
1 TTTTG-TTTTTG
120695 TTTT
1 TTTT
120699 TGAAAAAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
9 11 0.29
10 5 0.13
11 18 0.47
12 4 0.11
ACGTcount: A:0.00, C:0.04, G:0.11, T:0.86
Consensus pattern (11 bp):
TTTTGTTTTTG
Found at i:125275 original size:18 final size:19
Alignment explanation
Indices: 125249--125284 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
125239 TTTTAGTTTT
*
125249 ATAATTTTAAAA-TATTTA
1 ATAACTTTAAAAGTATTTA
125267 ATAACTTTAAAAGTATTT
1 ATAACTTTAAAAGTATTT
125285 TTAACATAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (19 bp):
ATAACTTTAAAAGTATTTA
Found at i:134693 original size:2 final size:2
Alignment explanation
Indices: 134648--134677 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
134638 TTATGCTTAT
*
134648 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
134678 GGTGTGTGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:135417 original size:23 final size:23
Alignment explanation
Indices: 135375--135418 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
135365 AAATAACATG
* *
135375 TTCACCAACATGTTCGTTTATCA
1 TTCACAAACATGTTCATTTATCA
*
135398 TTCACAAACATGTTTATTTAT
1 TTCACAAACATGTTCATTTAT
135419 ATTATCAGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (23 bp):
TTCACAAACATGTTCATTTATCA
Found at i:137641 original size:35 final size:35
Alignment explanation
Indices: 137595--137670 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
137585 AAAACAGTCC
* *
137595 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
* *
137630 TCAATTTCATTCTCAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
137665 TCAATT
1 TCAATT
137671 AAATTCAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.38, C:0.25, G:0.01, T:0.36
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
Found at i:138210 original size:130 final size:130
Alignment explanation
Indices: 138064--138311 Score: 415
Period size: 130 Copynumber: 1.9 Consensus size: 130
138054 TATTTATATA
* ** *
138064 ATCAATTTGGTCCTAAATTAAATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATATG
* *
138129 TTAGCACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
66 TTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
138194 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATATG
1 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATATG
* * *
138259 TTAACACATGATCATGATATATGTTATTGGTGACACATGTCACCACCTAATTA
66 TTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTA
138312 GAAGAAAATT
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 109 1.00
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.35
Consensus pattern (130 bp):
ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATATG
TTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
Found at i:138284 original size:23 final size:21
Alignment explanation
Indices: 138238--138284 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
138228 AATTAATCAT
138238 TTAACCAGGATCTGACATATG
1 TTAACCAGGATCTGACATATG
* *
138259 TTAACACATGATCATGATATATG
1 TTAAC-CAGGATC-TGACATATG
138282 TTA
1 TTA
138285 TTGGTGACAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 6 0.27
23 11 0.50
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (21 bp):
TTAACCAGGATCTGACATATG
Found at i:138585 original size:16 final size:18
Alignment explanation
Indices: 138564--138597 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
138554 ATTTCTTATT
138564 AAAAATA-AAAT-ATTCA
1 AAAAATATAAATGATTCA
138580 AAAAATATAAATGATTCA
1 AAAAATATAAATGATTCA
138598 TACATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATATAAATGATTCA
Found at i:139872 original size:23 final size:23
Alignment explanation
Indices: 139842--139886 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
139832 AATAATTTTT
139842 TATACATCTTATATAAATAATTC
1 TATACATCTTATATAAATAATTC
* *
139865 TATACATCTTATTTTAATAATT
1 TATACATCTTATATAAATAATT
139887 ATTTTTACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.49
Consensus pattern (23 bp):
TATACATCTTATATAAATAATTC
Found at i:141060 original size:229 final size:228
Alignment explanation
Indices: 140499--141206 Score: 1246
Period size: 229 Copynumber: 3.1 Consensus size: 228
140489 GTAAAGTATC
* *
140499 TATCCTTTTTATAAAAGTGTACATACTTATTTCACTGT-G-AAA-ATA-TTATTATTATCTTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATTATCTTTGG
* *
140560 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTG
66 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAATAATTTTT
*
140625 TGTGTAAATGAAATTATTAAATTAATATTATAGGTGGAAAACATGAAACACTATTAAAAAAATTG
131 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
140690 AAACATAAATTACATAACTTTAAAAAAAATATA
196 AAACATAAATTACATAACTTTAAAAAAAATATA
*
140723 TATTATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATTATCTTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATTATCTTTGG
* *
140788 TTAATATTGTTAAATTTAAATTTTAAATAATATTTTATAAAATATAAAAAAATCAAATAATTTTT
66 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAATAATTTTT
140853 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
131 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
140918 AAACATAAATTACATAAC-TTAAAAAATATATATA
196 AAACATAAATTACATAACTTTAAAAAA-A-ATATA
140952 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATTATCTTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATTATCTTTGG
*
141017 TTAATATTGGTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAATAATTTTT
66 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAATAATTTTT
141082 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTTAAAAAAATT
131 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTA-TTAAAAAAATT
* * *
141147 GAAACATAAATTACATAACTTTTAAAAAAGTGTA
195 GAAACATAAATTACATAACTTTAAAAAAAATATA
141181 TATCATTTTTATAAAAGTGTCCATAC
1 TATCATTTTTATAAAAGTGTCCATAC
141207 GTATAAAAGT
Statistics
Matches: 461, Mismatches: 15, Indels: 11
0.95 0.03 0.02
Matches are distributed among these distances:
224 35 0.08
225 1 0.00
226 3 0.01
227 11 0.02
228 160 0.35
229 213 0.46
230 31 0.07
231 7 0.02
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.40
Consensus pattern (228 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATTATCTTTGG
TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAATAATTTTT
TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTG
AAACATAAATTACATAACTTTAAAAAAAATATA
Found at i:141278 original size:20 final size:19
Alignment explanation
Indices: 141241--141300 Score: 77
Period size: 20 Copynumber: 3.1 Consensus size: 19
141231 AAGAAATATT
*
141241 AAAATGAT-ATACCAGGTAA
1 AAAATGATAAAACC-GGTAA
141260 AAATATGATAAAACCGGTAA
1 AAA-ATGATAAAACCGGTAA
141280 CAAAATGATAAAACCGGTAA
1 -AAAATGATAAAACCGGTAA
141300 A
1 A
141301 CGTTACCGGA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
19 4 0.11
20 26 0.70
21 7 0.19
ACGTcount: A:0.55, C:0.12, G:0.15, T:0.18
Consensus pattern (19 bp):
AAAATGATAAAACCGGTAA
Found at i:141478 original size:17 final size:17
Alignment explanation
Indices: 141433--141481 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 17
141423 CGATATAACA
141433 GGTAAAAT-ATGAAAACC
1 GGTAAAATGAT-AAAACC
141450 GGTATCAAAATGATAAAACC
1 GG--T-AAAATGATAAAACC
141470 GGTAAAATGATA
1 GGTAAAATGATA
141482 CCGGATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
17 11 0.39
18 1 0.04
19 1 0.04
20 13 0.46
21 2 0.07
ACGTcount: A:0.51, C:0.10, G:0.18, T:0.20
Consensus pattern (17 bp):
GGTAAAATGATAAAACC
Found at i:143718 original size:21 final size:21
Alignment explanation
Indices: 143692--143732 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
143682 ACAATCAAGT
143692 GTCGAAGAGAAACTTGAGAGA
1 GTCGAAGAGAAACTTGAGAGA
* *
143713 GTCGAAGATACACTTGAGAG
1 GTCGAAGAGAAACTTGAGAG
143733 GCATAAGGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.12, G:0.32, T:0.17
Consensus pattern (21 bp):
GTCGAAGAGAAACTTGAGAGA
Found at i:143806 original size:32 final size:32
Alignment explanation
Indices: 143765--143825 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
143755 AAATAGATGG
*
143765 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGTGA
* *
143797 AGTGGTGAAAGAAGTTGGGGTGTTAAGGG
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGG
143826 GTGATATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.30, C:0.00, G:0.48, T:0.23
Consensus pattern (32 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGTGA
Found at i:145029 original size:4 final size:4
Alignment explanation
Indices: 145020--145044 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
145010 TAAGAGATTG
145020 GTAT GTAT GTAT GTAT GTAT GTAT G
1 GTAT GTAT GTAT GTAT GTAT GTAT G
145045 AAAGGACATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (4 bp):
GTAT
Found at i:145645 original size:19 final size:19
Alignment explanation
Indices: 145621--145669 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
145611 AATGTAGGGC
145621 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
145640 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
145659 TATTTTTGTAT
1 TAATTTTGTAT
145670 GTAATATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:146123 original size:198 final size:198
Alignment explanation
Indices: 145784--147164 Score: 2304
Period size: 198 Copynumber: 6.9 Consensus size: 198
145774 CAATATGGCC
* * ** *
145784 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAAAAACATTAAAAA
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCA-TCGAAC
*
145849 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA-CGGTACAAGTTTACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
* *
145913 GAATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
145978 TGGAA
194 TGGAA
* * *
145983 AACAGGGTGCAACCATAAAATGTCGATCCATATATAAAAAGTTTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
146048 CAAAAGTATAATGTAATATGTAATTTTTCAATC-AACCGGTACAAGTTTACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
* *
146112 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTAGTGTCGATATTTTTGGTCCAGAATAAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
146177 GAA
196 GAA
*
146180 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCATATATAAAAAGTGT
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCC---------------
*
146245 CGATCCCAAAATCATCGAACCCTAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACA
51 C-A----A-AATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACA
* * *
146310 AGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATATGTCGACACTATTTAGTTTGTGTCGAT
110 AGTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGAT
*
146375 ATTTTTGTTCCAGAATGAATGGAA
175 ATTTTTGGTCCAGAATGAATGGAA
146399 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
146464 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
146529 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
146594 GAA
196 GAA
146597 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
146662 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
146727 AATATGTCTAAATAATGTGTCGACACGTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
146792 GAA
196 GAA
*
146795 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
146860 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
146925 AATATGTCTAAATAATGTGTCGACAC-TTTTAGTTGGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
146989 GAA
196 GAA
*
146992 AACAGGGTGCACCCATAAAGTGTCGATCC--ATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
147055 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
147120 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
147165 CTAATTTAAA
Statistics
Matches: 1128, Mismatches: 30, Indels: 51
0.93 0.02 0.04
Matches are distributed among these distances:
195 125 0.11
196 17 0.02
197 155 0.14
198 584 0.52
199 56 0.05
203 1 0.00
204 1 0.00
212 1 0.00
213 1 0.00
217 1 0.00
218 43 0.04
219 143 0.13
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (198 bp):
AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
GAA
Found at i:146221 original size:21 final size:21
Alignment explanation
Indices: 146196--146250 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
146186 GTGCACCCAT
146196 AAAGTGTCGATCCATATATAA
1 AAAGTGTCGATCCATATATAA
146217 AAAGTGTCGATCCATATATAA
1 AAAGTGTCGATCCATATATAA
146238 AAAGTGTCGATCC
1 AAAGTGTCGATCC
146251 CAAAATCATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (21 bp):
AAAGTGTCGATCCATATATAA
Found at i:146837 original size:615 final size:592
Alignment explanation
Indices: 145784--147164 Score: 2327
Period size: 615 Copynumber: 2.3 Consensus size: 592
145774 CAATATGGCC
* * ** *
145784 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCAAAAACATTAAAAA
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCA-TCGAAC
*
145849 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA-CGGTACAAGTTTACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
* *
145913 GAATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
*
145978 TGGAAAACAGGGTGCAACCATAAAATGTCGATCCATATATAAAAAGTTTCGATCCCAAAAACATC
194 TGGAAAACAGGGTGCAACCATAAAATGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATC
*
146043 GAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCAACCGGTACAAGTTTACCGGTTTTATG
259 GAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCAACCGGTACAAGTATACCGGTTTTATG
*
146108 AGAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTAGTGTCGATATTTTTGGTCCAGAATA
324 AGAGAATATGTCTAAATAATGTGTCGACACGTTTTAGTTAGTGTCGATATTTTTGGTCCAGAATA
146173 AATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCATATATAA
389 AATGGAAAACAGGGTG----C----A----C---CC----AT--AAAGTGTCGATCCATATATAA
*
146238 AAAGTGTCGATCCCAAAATCATCGAACCCTAAAGTATAATGTAATATGTAATTTTTCAATCTAAC
433 AAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAAC
* *
146303 CGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATATGTCGACACTATTTAGTTTG
498 CGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAATAATATGTCGACACT-TTTAGTTGG
*
146368 TGTCGATATTTTTGTTCCAGAATGAATGGAA
562 TGTCGATATTTTTGGTCCAGAATGAATGGAA
146399 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
146464 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
146529 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
* *
146594 GAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
196 GAAAACAGGGTGCAACCATAAAATGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGA
146659 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGA
261 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATC-AACCGGTACAAGTATACCGGTTTTATGA
* *
146724 GAGAATATGTCTAAATAATGTGTCGACACGTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGA
325 GAGAATATGTCTAAATAATGTGTCGACACGTTTTAGTTAGTGTCGATATTTTTGGTCCAGAATAA
146789 ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
390 ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
146854 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTA
455 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTA
*
146919 TGAGAGAATATGTCTAAATAATGTGTCGACACTTTTAGTTGGTGTCGATATTTTTGGTCCAGAAT
520 TGAGAGAATATGTCTAAATAATATGTCGACACTTTTAGTTGGTGTCGATATTTTTGGTCCAGAAT
146984 GAATGGAA
585 GAATGGAA
*
146992 AACAGGGTGCACCCATAAAGTGTCGATCC--ATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
147055 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
147120 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
147165 CTAATTTAAA
Statistics
Matches: 743, Mismatches: 21, Indels: 28
0.94 0.03 0.04
Matches are distributed among these distances:
591 144 0.19
593 66 0.09
594 138 0.19
596 2 0.00
600 2 0.00
603 1 0.00
607 1 0.00
611 1 0.00
614 174 0.23
615 214 0.29
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (592 bp):
AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
GAAAACAGGGTGCAACCATAAAATGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGA
ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCAACCGGTACAAGTATACCGGTTTTATGAG
AGAATATGTCTAAATAATGTGTCGACACGTTTTAGTTAGTGTCGATATTTTTGGTCCAGAATAAA
TGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATC
GAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTAT
GAGAGAATATGTCTAAATAATATGTCGACACTTTTAGTTGGTGTCGATATTTTTGGTCCAGAATG
AATGGAA
Found at i:148649 original size:6 final size:6
Alignment explanation
Indices: 148625--148725 Score: 67
Period size: 6 Copynumber: 16.3 Consensus size: 6
148615 AGCGGTCGCA
* * * ** * *
148625 GAAGAT GAAGCT GACGAT GAAGAT GACGAT GAAGAT GGCGAT GATGAC
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
* * * * *
148673 GACGAT GAAGCT GACGAT GAAGAT GATGACGAT GATGAT GATGAT GAAGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GA--A-GAT GAAGAT GAAGAT GAAGAT
148724 GA
1 GA
148726 TGATCCAAAC
Statistics
Matches: 72, Mismatches: 20, Indels: 6
0.73 0.20 0.06
Matches are distributed among these distances:
6 66 0.92
8 1 0.01
9 5 0.07
ACGTcount: A:0.38, C:0.09, G:0.35, T:0.19
Consensus pattern (6 bp):
GAAGAT
Found at i:148715 original size:9 final size:9
Alignment explanation
Indices: 148640--148729 Score: 63
Period size: 9 Copynumber: 10.0 Consensus size: 9
148630 TGAAGCTGAC
*
148640 GATGAAGAT
1 GATGATGAT
* *
148649 GACGATGAA
1 GATGATGAT
**
148658 GATGGCGAT
1 GATGATGAT
* *
148667 GATGACGAC
1 GATGATGAT
* *
148676 GATGAAGCT
1 GATGATGAT
* *
148685 GACGATGAA
1 GATGATGAT
*
148694 GATGATGAC
1 GATGATGAT
148703 GATGATGAT
1 GATGATGAT
*
148712 GATGATGAA
1 GATGATGAT
148721 GATGATGAT
1 GATGATGAT
148730 CCAAACAAGT
Statistics
Matches: 60, Mismatches: 21, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
9 60 1.00
ACGTcount: A:0.37, C:0.08, G:0.34, T:0.21
Consensus pattern (9 bp):
GATGATGAT
Found at i:148729 original size:12 final size:12
Alignment explanation
Indices: 148628--148725 Score: 106
Period size: 12 Copynumber: 7.9 Consensus size: 12
148618 GGTCGCAGAA
*
148628 GATGAAGCTGAC
1 GATGAAGATGAC
148640 GATGAAGATGAC
1 GATGAAGATGAC
*
148652 GATGAAGATGGC
1 GATGAAGATGAC
* *
148664 GATGATGACGAC
1 GATGAAGATGAC
*
148676 GATGAAGCTGAC
1 GATGAAGATGAC
148688 GATGAAGATGATGAC
1 GATG-A-A-GATGAC
* *
148703 GATGATGATGAT
1 GATGAAGATGAC
148715 GATGAAGATGA
1 GATGAAGATGA
148726 TGATCCAAAC
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
12 59 0.83
13 1 0.01
14 2 0.03
15 9 0.13
ACGTcount: A:0.37, C:0.09, G:0.35, T:0.19
Consensus pattern (12 bp):
GATGAAGATGAC
Found at i:148729 original size:18 final size:18
Alignment explanation
Indices: 148625--148729 Score: 84
Period size: 18 Copynumber: 5.7 Consensus size: 18
148615 AGCGGTCGCA
* *
148625 GAAGATGAAGCTGACGAT
1 GAAGATGATGATGACGAT
* *
148643 GAAGATGACGATGAAGAT
1 GAAGATGATGATGACGAT
** *
148661 GGCGATGATGACGACGAT
1 GAAGATGATGATGACGAT
* * *
148679 GAAGCTGACGATGAAGAT
1 GAAGATGATGATGACGAT
*
148697 GATGACGATGATGATGATGAT
1 GA--A-GATGATGATGACGAT
148718 GAAGATGATGAT
1 GAAGATGATGAT
148730 CCAAACAAGT
Statistics
Matches: 67, Mismatches: 17, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
18 51 0.76
19 1 0.01
20 1 0.01
21 14 0.21
ACGTcount: A:0.37, C:0.09, G:0.34, T:0.20
Consensus pattern (18 bp):
GAAGATGATGATGACGAT
Found at i:150489 original size:183 final size:182
Alignment explanation
Indices: 150214--150706 Score: 860
Period size: 183 Copynumber: 2.7 Consensus size: 182
150204 GCAATGCTAT
*
150214 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATCTT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
150279 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTGTTAAAAAGTGTCGACA
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATT-TAAAAAAGTGTCGACA
* * *
150344 TTTACACATCGGAACTCATAATTATAATGTAATAGATAATTTTGTAATATAAC
130 TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTATAATATAAC
150397 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
* *
150462 GTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAAAAGTATCGACA
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATAC-ATTTAAAAAAGTGTCGACA
*
150527 TTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTATAATATAAC
130 TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTATAATATAAC
* *
150580 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTATAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
150645 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCAATACCATTTAAAAAAGTGTCG
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATA-CATTTAAAAAAGTGTCG
150707 GTAATTTTAA
Statistics
Matches: 295, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
183 291 0.99
184 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (182 bp):
CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACATTTAAAAAAGTGTCGACAT
TTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTATAATATAAC
Found at i:153936 original size:39 final size:39
Alignment explanation
Indices: 153879--153965 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
153869 TCCGATGCTC
*
153879 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
* *
153918 ATCAAAATTCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
153957 ATCAAAATC
1 ATCAAAATC
153966 TACAACTTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:154434 original size:22 final size:23
Alignment explanation
Indices: 154379--154450 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
154369 ATAGGTAAAA
*
154379 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
154402 ATATAACGTAATAGGTATCG-TT
1 ATATAATGTAATAGGTAGCGCTT
* * *
154424 TTATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
154447 ATAT
1 ATAT
154451 TGTAAAGTGT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 18 0.45
23 22 0.55
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:154834 original size:23 final size:23
Alignment explanation
Indices: 154803--154875 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
154793 ATAGGTAAAA
* *
154803 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGATT
* *
154826 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGATT
*
154849 ATATAATGTAATAGGTAGTGATT
1 ATATAATGTAATAGGTAGCGATT
154872 ATAT
1 ATAT
154876 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGATT
Found at i:154967 original size:424 final size:428
Alignment explanation
Indices: 154179--155651 Score: 2661
Period size: 425 Copynumber: 3.5 Consensus size: 428
154169 GTTAATGTTG
154179 TTAAATT-AAAATTCTAAAT-AT-TTTTATAAAATATCAAAA-AATC-AATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
154239 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
*
154304 AAATTACATAACTTTAAAAGAAGTATCAATCATTTTTTATAAAAAGTATGGACACTTTCAATATA
131 AAATTACATAACTTTAAAAGAAGTATCGATCA-TTTTTATAAAAAGTATGGACACTTTCAATATA
*
154369 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAACGTAATAGGTATCGTTT-TATAATGT
195 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGT
154433 AATAGGTAGTGGTTATATTGTAAAGTGTCTATCC-TTTTATAAAAGTGTCCATACTTTTTTCACT
260 AATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGT-T-CATACTTTTTTCACT
154497 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAA
323 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAA
154562 GCGTCTAATGATTTATTTTTTACGTTACGATATTATTATTA
388 GCGTCTAATGATTTATTTTTTACGTTACGATATTATTATTA
154603 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAA-AATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
154667 ATGAAATTATTAAATTAATATTGTAGGTGG-AAACATG-AACACTATT-AAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
* * *
154729 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGTACATTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAA
154794 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
*
154859 ATAGGTAGTGATTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTTCATACTTTTTTCACTGTG
261 ATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTTCATACTTTTTTCACTGTG
*
154924 GAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATT--TTTAGT-ATTATAGGCG
326 GAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAAGCG
154986 TCTAATGATTTATTTTTTACGTTACGATATTATTATTA
391 TCTAATGATTTATTTTTTACGTTACGATATTATTATTA
155024 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
155089 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
*
155154 AAATTACATAACTTTAAAAGAAGTATAGATCATTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAA
155219 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
* *
155284 ATAGGTAGTGGTTATATTGTAAAGTGTCTATCATTTTTATAAAAATGTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTAT-AAAA-GTTCATACTTTTTTCACTG
*
155349 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTACTAATTAT-AG
324 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAAG
*
155413 ACGTCTAATGATTTATTTTTTAAGTTACGATATATATTATTA
389 -CGTCTAATGATTTATTTTTTACGTTACGATAT-TATTATTA
*
155455 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAATTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
155520 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
155585 AAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAA
155650 TA
196 TA
155652 TAATGTAATA
Statistics
Matches: 1013, Mismatches: 19, Indels: 27
0.96 0.02 0.03
Matches are distributed among these distances:
421 89 0.09
422 58 0.06
423 7 0.01
424 165 0.16
425 280 0.28
426 27 0.03
427 95 0.09
428 47 0.05
429 6 0.01
430 36 0.04
431 203 0.20
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.39
Consensus pattern (428 bp):
TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
AAATTACATAACTTTAAAAGAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTCAATATAA
TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
ATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTTCATACTTTTTTCACTGTG
GAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAAGCG
TCTAATGATTTATTTTTTACGTTACGATATTATTATTA
Found at i:155259 original size:23 final size:23
Alignment explanation
Indices: 155228--155300 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
155218 ATAGGTAAAA
*
155228 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
155251 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
155274 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
155297 ATAT
1 ATAT
155301 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:159095 original size:23 final size:23
Alignment explanation
Indices: 159069--159137 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
159059 CACCACAGCT
*
159069 CGTATAATTGCACCGAAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
* *
159092 CGTAGAATTTCACC-AGAGTGCCG
1 CGTAGAATTGCACCGA-AGTGCCA
*
159115 CGTAGAATTGCACCGTAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
159138 TATAATAATG
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
22 1 0.03
23 37 0.97
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.22
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCA
Found at i:162898 original size:23 final size:23
Alignment explanation
Indices: 162867--162929 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
162857 TGAGTCTGTG
* *
162867 ATTCTCTTTGGTCTTTTTCCCACA
1 ATTC-CTTTGCTCCTTTTCCCACA
162891 ATTCCTTTGCTCCTTTTCCCACA
1 ATTCCTTTGCTCCTTTTCCCACA
*
162914 ATTCCTTTCCTCCTTT
1 ATTCCTTTGCTCCTTT
162930 CTTCTCTCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
23 32 0.89
24 4 0.11
ACGTcount: A:0.11, C:0.35, G:0.05, T:0.49
Consensus pattern (23 bp):
ATTCCTTTGCTCCTTTTCCCACA
Found at i:164499 original size:2 final size:2
Alignment explanation
Indices: 164492--164545 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
164482 ATAGTTCAAC
164492 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
164534 AT AT AT AT AT AT
1 AT AT AT AT AT AT
164546 GTGTGTATGT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:164556 original size:4 final size:4
Alignment explanation
Indices: 164543--164577 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
164533 TATATATATA
*
164543 TATG TGTG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TAT
164578 AATATTAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:165977 original size:14 final size:14
Alignment explanation
Indices: 165958--166025 Score: 90
Period size: 14 Copynumber: 5.1 Consensus size: 14
165948 GAAAGGGTAC
165958 AACAATATATATAT
1 AACAATATATATAT
*
165972 AACAATATATATAC
1 AACAATATATATAT
165986 AAC-A-ATATATAT
1 AACAATATATATAT
165998 AACAATATATATAT
1 AACAATATATATAT
*
166012 -A-TATATATATAT
1 AACAATATATATAT
166024 AA
1 AA
166026 AAGGATTTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
12 20 0.42
13 4 0.08
14 24 0.50
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (14 bp):
AACAATATATATAT
Found at i:165981 original size:12 final size:12
Alignment explanation
Indices: 165964--166025 Score: 79
Period size: 12 Copynumber: 4.8 Consensus size: 12
165954 GTACAACAAT
165964 ATATATATAACA
1 ATATATATAACA
165976 ATATATATACAACA
1 ATATATAT--AACA
165990 ATATATATAACA
1 ATATATATAACA
*
166002 ATATATATATATA
1 ATATATATA-ACA
166015 TATATATATAA
1 -ATATATATAA
166026 AAGGATTTCA
Statistics
Matches: 45, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
12 21 0.47
13 3 0.07
14 21 0.47
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.37
Consensus pattern (12 bp):
ATATATATAACA
Found at i:166012 original size:28 final size:28
Alignment explanation
Indices: 165955--166010 Score: 98
Period size: 26 Copynumber: 2.1 Consensus size: 28
165945 TTGGAAAGGG
165955 TACAACAATATATATATAACAATATATA
1 TACAACAATATATATATAACAATATATA
165983 TACAAC-A-ATATATATAACAATATATA
1 TACAACAATATATATATAACAATATATA
166009 TA
1 TA
166011 TATATATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.75
27 1 0.04
28 6 0.21
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (28 bp):
TACAACAATATATATATAACAATATATA
Found at i:167507 original size:2 final size:2
Alignment explanation
Indices: 167500--167524 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
167490 CTTTTCATCA
167500 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
167525 AACCGTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:176061 original size:2 final size:2
Alignment explanation
Indices: 176054--176078 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
176044 GAAATTTGAA
176054 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
176079 ATTGTAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:176834 original size:17 final size:18
Alignment explanation
Indices: 176795--176835 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
176785 TTGATCGGTT
176795 TTGACCCGACCCGACCTG
1 TTGACCCGACCCGACCTG
* *
176813 TTGACCCTACCCGATC-G
1 TTGACCCGACCCGACCTG
176830 TTGACC
1 TTGACC
176836 GGATGTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.17, C:0.41, G:0.20, T:0.22
Consensus pattern (18 bp):
TTGACCCGACCCGACCTG
Found at i:176887 original size:29 final size:28
Alignment explanation
Indices: 176842--176970 Score: 159
Period size: 29 Copynumber: 4.5 Consensus size: 28
176832 GACCGGATGT
*
176842 TATTTTGGGAATATATTCGAAATGTGTGC
1 TATTTTGGGAATTTATTCGAAATG-GTGC
176871 TATTTTGGGAATTTATTCGAAATAGGTGC
1 TATTTTGGGAATTTATTCGAAAT-GGTGC
* * *
176900 TATTTTGGAAATTTATTCAAAATGAGTGT
1 TATTTTGGGAATTTATTCGAAATG-GTGC
* *
176929 TATTTTGGGAATTAATTCGAAAAGGGTGC
1 TATTTTGGGAATTTATTCG-AAATGGTGC
*
176958 TATTTTGGTAATT
1 TATTTTGGGAATT
176971 ATTTTAAAAA
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
28 1 0.01
29 81 0.93
30 5 0.06
ACGTcount: A:0.29, C:0.05, G:0.22, T:0.43
Consensus pattern (28 bp):
TATTTTGGGAATTTATTCGAAATGGTGC
Found at i:176933 original size:58 final size:58
Alignment explanation
Indices: 176842--176970 Score: 179
Period size: 58 Copynumber: 2.2 Consensus size: 58
176832 GACCGGATGT
* * * * *
176842 TATTTTGGGAATATATTCGAAATGTGTGCTATTTTGGGAATTTATTCGAAATA-GGTGC
1 TATTTTGGAAATTTATTCAAAATGAGTGCTATTTTGGGAATTAATTCGAAA-AGGGTGC
*
176900 TATTTTGGAAATTTATTCAAAATGAGTGTTATTTTGGGAATTAATTCGAAAAGGGTGC
1 TATTTTGGAAATTTATTCAAAATGAGTGCTATTTTGGGAATTAATTCGAAAAGGGTGC
*
176958 TATTTTGGTAATT
1 TATTTTGGAAATT
176971 ATTTTAAAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 1 0.02
58 62 0.98
ACGTcount: A:0.29, C:0.05, G:0.22, T:0.43
Consensus pattern (58 bp):
TATTTTGGAAATTTATTCAAAATGAGTGCTATTTTGGGAATTAATTCGAAAAGGGTGC
Found at i:184088 original size:29 final size:29
Alignment explanation
Indices: 184041--184175 Score: 177
Period size: 29 Copynumber: 4.7 Consensus size: 29
184031 ACCGTTGATC
*
184041 GGGTGCTATTTTGGGAATTTATTCGAAATA
1 GGGTGCTATTTTGGGAATTAATTCGAAA-A
* *
184071 -GGTGTTATTTTGGAAATTAATTCGAAATA
1 GGGTGCTATTTTGGGAATTAATTCGAAA-A
* *
184100 --TTGCTATTTTGGGAATTAATTTGAAAA
1 GGGTGCTATTTTGGGAATTAATTCGAAAA
184127 GGGTGCTATTTTGGGAATTAATTCGAAAA
1 GGGTGCTATTTTGGGAATTAATTCGAAAA
*
184156 GGGTGCTATTTTGGTAATTA
1 GGGTGCTATTTTGGGAATTA
184176 TTAAAAAAAT
Statistics
Matches: 93, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
27 1 0.01
28 22 0.24
29 70 0.75
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.41
Consensus pattern (29 bp):
GGGTGCTATTTTGGGAATTAATTCGAAAA
Found at i:184113 original size:57 final size:57
Alignment explanation
Indices: 184044--184154 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 57
184034 GTTGATCGGG
* *
184044 TGCTATTTTGGGAATTTATTCGAAATA-GGTGTTATTTTGGAAATTAATTCGAAATAT
1 TGCTATTTTGGGAATTAATTCGAAA-AGGGTGCTATTTTGGAAATTAATTCGAAATAT
* *
184101 TGCTATTTTGGGAATTAATTTGAAAAGGGTGCTATTTTGGGAATTAATTCGAAA
1 TGCTATTTTGGGAATTAATTCGAAAAGGGTGCTATTTTGGAAATTAATTCGAAA
184155 AGGGTGCTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
56 1 0.02
57 48 0.98
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.41
Consensus pattern (57 bp):
TGCTATTTTGGGAATTAATTCGAAAAGGGTGCTATTTTGGAAATTAATTCGAAATAT
Found at i:187370 original size:3 final size:3
Alignment explanation
Indices: 187364--187500 Score: 184
Period size: 3 Copynumber: 45.7 Consensus size: 3
187354 TTTTTATCCA
* * *
187364 TAT TAT TAT TAT TAT TAT TAA TAT TAT TAT TAT CAT TAT TAA TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
187412 TAT TAT TAT TAT TAT TAT TAT TAA TAT TAT TAT TAT CAT TGT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
187460 TAT TAT TAT TAT TTT TTT TAT TAT TAT TAT TTT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
187501 AATATATTAA
Statistics
Matches: 116, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 116 1.00
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:191491 original size:15 final size:15
Alignment explanation
Indices: 191471--191502 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
191461 TCAATATTCC
191471 ATTCTATTTTTAATA
1 ATTCTATTTTTAATA
191486 ATTCTATTTTTAATA
1 ATTCTATTTTTAATA
191501 AT
1 AT
191503 ATGATTTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTCTATTTTTAATA
Found at i:193573 original size:30 final size:30
Alignment explanation
Indices: 193530--193587 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
193520 TTACAGAGTT
*
193530 ATAATCAAGTCACTCAATTAATTAATTATA
1 ATAATCAAATCACTCAATTAATTAATTATA
* * *
193560 ATAATTAAATCACTCAATTGATTGATTA
1 ATAATCAAATCACTCAATTAATTAATTA
193588 CAACATTAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (30 bp):
ATAATCAAATCACTCAATTAATTAATTATA
Found at i:194233 original size:14 final size:15
Alignment explanation
Indices: 194206--194234 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
194196 TAACAGATAT
194206 ATAAAAGTTAAACTA
1 ATAAAAGTTAAACTA
194221 ATAAAAG-TAAACTA
1 ATAAAAGTTAAACTA
194235 TTAATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.24
Consensus pattern (15 bp):
ATAAAAGTTAAACTA
Found at i:196758 original size:25 final size:26
Alignment explanation
Indices: 196723--196779 Score: 80
Period size: 25 Copynumber: 2.2 Consensus size: 26
196713 CATTCCTCTC
* *
196723 AAATTTTATAAATATACTTAT-GTTA
1 AAATTTAATAAATATACTTATCATTA
*
196748 AAATTTAATAAATATATTTATCATTA
1 AAATTTAATAAATATACTTATCATTA
196774 AAATTT
1 AAATTT
196780 TATGATTTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 19 0.68
26 9 0.32
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (26 bp):
AAATTTAATAAATATACTTATCATTA
Found at i:199597 original size:14 final size:15
Alignment explanation
Indices: 199578--199611 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
199568 TTTTATATAT
199578 TTTTAAAAA-ATTAA
1 TTTTAAAAACATTAA
199592 TTTTAAAAATCATTAA
1 TTTTAAAAA-CATTAA
199608 TTTT
1 TTTT
199612 TTAAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.50
16 9 0.50
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TTTTAAAAACATTAA
Found at i:207554 original size:2 final size:2
Alignment explanation
Indices: 207549--207581 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
207539 CTCTCTCTAC
207549 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
207582 TATTGTAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:208986 original size:2 final size:2
Alignment explanation
Indices: 208979--209008 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
208969 TACTCAAATT
208979 TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
209009 TAAAATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:219500 original size:55 final size:55
Alignment explanation
Indices: 219392--219505 Score: 135
Period size: 55 Copynumber: 2.1 Consensus size: 55
219382 AAATCACAAT
*
219392 AACAATGAGTTCAAATCACATGAATCTCTAATCTACATCGAACATCCATCCTAAG
1 AACAATGAGTTCAAATCACATGAATCTCTAATCTACATCGAACATCCACCCTAAG
* ** *
219447 AACAATGAGTTTAAATCACAAT-AAGT-TCTAATCTATGT-TAACATCCCACCCTAAG
1 AACAATGAGTTCAAATCAC-ATGAA-TCTCTAATCTACATCGAACAT-CCACCCTAAG
219502 AACA
1 AACA
219506 CTGGTTGTCT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
54 5 0.10
55 43 0.84
56 3 0.06
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.26
Consensus pattern (55 bp):
AACAATGAGTTCAAATCACATGAATCTCTAATCTACATCGAACATCCACCCTAAG
Found at i:223232 original size:26 final size:24
Alignment explanation
Indices: 223170--223232 Score: 58
Period size: 23 Copynumber: 2.6 Consensus size: 24
223160 TATTTTAATC
*
223170 AAAATAT-TAATTATTAAAATATGT
1 AAAATATAT-ATTATTAAAATATCT
* *
223194 AAAATATAT-TTATTAATATTTCT
1 AAAATATATATTATTAAAATATCT
223217 AATAATATGATATTAT
1 AA-AATAT-ATATTAT
223233 AGTTTTAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
23 13 0.41
24 12 0.38
25 3 0.09
26 4 0.12
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (24 bp):
AAAATATATATTATTAAAATATCT
Found at i:223289 original size:23 final size:23
Alignment explanation
Indices: 223239--223312 Score: 80
Period size: 23 Copynumber: 3.2 Consensus size: 23
223229 TTATAGTTTT
*
223239 AATATTATAATAAA-ATATTCAA
1 AATATTATAATAAATATATTTAA
*
223261 TTATATTATAATAAATATATTTAA
1 -AATATTATAATAAATATATTTAA
* *
223285 AATA-TACTAATTAATATTTTTAA
1 AATATTA-TAATAAATATATTTAA
223308 AATAT
1 AATAT
223313 AATATAACAC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
22 2 0.05
23 34 0.79
24 7 0.16
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (23 bp):
AATATTATAATAAATATATTTAA
Found at i:223419 original size:33 final size:33
Alignment explanation
Indices: 223354--223420 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
223344 ATATAATTTA
**
223354 TAATATTTTTATTTCAATAAAATATATCAATAT
1 TAATATTTTTATTTCAATAAAATATAAAAATAT
223387 TAATATTTTTA-TT-AATAAAATTATAAAAAATAT
1 TAATATTTTTATTTCAATAAAA-TAT-AAAAATAT
223420 T
1 T
223421 TTAATAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 7 0.23
32 5 0.17
33 18 0.60
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (33 bp):
TAATATTTTTATTTCAATAAAATATAAAAATAT
Found at i:223421 original size:27 final size:31
Alignment explanation
Indices: 223355--223431 Score: 83
Period size: 26 Copynumber: 2.6 Consensus size: 31
223345 TATAATTTAT
*
223355 AATATTTTTATTTCAATAAAATATATCAATATT
1 AATATTTTTA-TT-AATAAAATATATCAATATA
223388 AATATTTTTATTAATAAAAT-TAT-AA-A-A
1 AATATTTTTATTAATAAAATATATCAATATA
*
223415 AATA-TTTTAATAATAAA
1 AATATTTTTATTAATAAA
223432 TAAATTATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
26 12 0.29
27 4 0.10
28 1 0.02
29 2 0.05
30 3 0.07
31 8 0.19
32 2 0.05
33 10 0.24
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (31 bp):
AATATTTTTATTAATAAAATATATCAATATA
Found at i:223472 original size:22 final size:22
Alignment explanation
Indices: 223447--223488 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
223437 TATTTTATTA
*
223447 TTTTAAAATTAATAATATTAAG
1 TTTTAAAATAAATAATATTAAG
**
223469 TTTTATGATAAATAATATTA
1 TTTTAAAATAAATAATATTA
223489 TTTATTGTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (22 bp):
TTTTAAAATAAATAATATTAAG
Found at i:227306 original size:27 final size:27
Alignment explanation
Indices: 227276--227333 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
227266 GGAACGAATT
227276 TCATGTATATTCCTTTTCTTTTAGCTG
1 TCATGTATATTCCTTTTCTTTTAGCTG
227303 TCATGTATATTCCTTTTCTTTTAGCTG
1 TCATGTATATTCCTTTTCTTTTAGCTG
227330 TCAT
1 TCAT
227334 ATCACATCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.16, C:0.19, G:0.10, T:0.55
Consensus pattern (27 bp):
TCATGTATATTCCTTTTCTTTTAGCTG
Found at i:237925 original size:6 final size:6
Alignment explanation
Indices: 237914--237942 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
237904 GTTGTTTCCA
237914 GAAAAG GAAAAG GAAAAG GAAAAG GAAAA
1 GAAAAG GAAAAG GAAAAG GAAAAG GAAAA
237943 AAAAAAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (6 bp):
GAAAAG
Found at i:237948 original size:18 final size:18
Alignment explanation
Indices: 237914--237949 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
237904 GTTGTTTCCA
**
237914 GAAAAGGAAAAGGAAAAG
1 GAAAAGGAAAAAAAAAAG
237932 GAAAAGGAAAAAAAAAAG
1 GAAAAGGAAAAAAAAAAG
237950 AGATAATCAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (18 bp):
GAAAAGGAAAAAAAAAAG
Found at i:244330 original size:17 final size:17
Alignment explanation
Indices: 244287--244320 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
244277 TTCTCTTTAT
*
244287 AGAAGGAAAAAGAAAAA
1 AGAACGAAAAAGAAAAA
*
244304 AGAACAAAAAAGAAAAA
1 AGAACGAAAAAGAAAAA
244321 CTGAAGAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (17 bp):
AGAACGAAAAAGAAAAA
Found at i:247693 original size:15 final size:15
Alignment explanation
Indices: 247673--247710 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
247663 TTATAAAAGC
*
247673 TAGGGTTTAAATGTT
1 TAGGGTTTAAAGGTT
*
247688 TAGGGTTT-AGGGTT
1 TAGGGTTTAAAGGTT
247702 TAGGGTTTA
1 TAGGGTTTA
247711 TATTATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.45
Consensus pattern (15 bp):
TAGGGTTTAAAGGTT
Found at i:247697 original size:7 final size:7
Alignment explanation
Indices: 247685--247710 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
247675 GGGTTTAAAT
247685 GTTTAGG
1 GTTTAGG
247692 GTTTAGG
1 GTTTAGG
247699 GTTTAGG
1 GTTTAGG
247706 GTTTA
1 GTTTA
247711 TATTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.46
Consensus pattern (7 bp):
GTTTAGG
Found at i:247748 original size:2 final size:2
Alignment explanation
Indices: 247743--247842 Score: 97
Period size: 2 Copynumber: 53.0 Consensus size: 2
247733 ATATAAAATA
* *
247743 AT AT AT AT AT AT AT AT A- AT AT A- AA AT AT AA ACT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT
* * *
247783 AT GT A- AT -T AT -T AT A- AA AT AT AT AA AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
247821 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
247843 CGGGGCGGGG
Statistics
Matches: 82, Mismatches: 8, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
1 7 0.09
2 74 0.90
3 1 0.01
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (2 bp):
AT
Found at i:247753 original size:34 final size:34
Alignment explanation
Indices: 247709--247823 Score: 126
Period size: 34 Copynumber: 3.3 Consensus size: 34
247699 GTTTAGGGTT
247709 TATATTATATAATTAATATAAAAAATATAAAATAA
1 TATA-TATATAATTAATATAAAAAATATAAAATAA
* *
247744 TATATATATATATATAATAT--AAAATATAAACTAT
1 TATATATATA-AT-TAATATAAAAAATATAAAATAA
* * *
247778 TATATATGTAATTATTATAAAATATATAAATATATA
1 TATATATATAATTAATATAAAAAATATAAA-ATA-A
247814 TATATATATA
1 TATATATATA
247824 TATATATATA
Statistics
Matches: 66, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
32 5 0.08
33 2 0.03
34 36 0.55
35 8 0.12
36 15 0.23
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.42
Consensus pattern (34 bp):
TATATATATAATTAATATAAAAAATATAAAATAA
Found at i:248846 original size:156 final size:157
Alignment explanation
Indices: 248557--248878 Score: 538
Period size: 156 Copynumber: 2.1 Consensus size: 157
248547 GAACCTCGAG
*
248557 GATAAATATTCTAGTATTTCTTCCATAGAGAAAAATCCCGAGTTGTCTTCTCAACTCACTAAGGA
1 GATAAATATTATAGTATTTCTTCCATAGAGAAAAATCCCGAGTTGTCTTCTCAACTCACTAAGGA
* ** * *
248622 GCTTGAGGATATATATTCAAGTATTTCTGGTTGGAAACCTTCCCTTGAGAAAAATCATGATTTAT
66 GCTTGAGGATATATACTCAACCATTTCTGGTTGGAAACCTTCCCTTGAGAAAAATCATGACTCAT
*
248687 CTTCTCCGCTTACT-AAAAAAATTGAA
131 CTTCTCAGCTTACTAAAAAAAATTGAA
*
248713 GATAAATATTATAGTATTTCTTCCGTAGAGAAAAATCCCGAGTTGTCTTCTCAACTCACTAAGGA
1 GATAAATATTATAGTATTTCTTCCATAGAGAAAAATCCCGAGTTGTCTTCTCAACTCACTAAGGA
* * *
248778 GCTTGAGGATATATACTCTACCATTTCTGGTTGGAAGCCTTCCCTTGAGAAAAATCATGACTCGT
66 GCTTGAGGATATATACTCAACCATTTCTGGTTGGAAACCTTCCCTTGAGAAAAATCATGACTCAT
248843 CTTCTCAGCTTACTAAAAAAAATTGAA
131 CTTCTCAGCTTACTAAAAAAAATTGAA
248870 GATAAATAT
1 GATAAATAT
248879 AGTATTTCTC
Statistics
Matches: 154, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
156 133 0.86
157 21 0.14
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (157 bp):
GATAAATATTATAGTATTTCTTCCATAGAGAAAAATCCCGAGTTGTCTTCTCAACTCACTAAGGA
GCTTGAGGATATATACTCAACCATTTCTGGTTGGAAACCTTCCCTTGAGAAAAATCATGACTCAT
CTTCTCAGCTTACTAAAAAAAATTGAA
Found at i:252270 original size:21 final size:21
Alignment explanation
Indices: 252230--252270 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
252220 TTCTGGGCTA
*
252230 GGGAATCGATACCCATTCAAG
1 GGGAATCGATACCCACTCAAG
*
252251 GGGAATCGATACCCCCTCAA
1 GGGAATCGATACCCACTCAA
252271 ACGAATATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.29, G:0.22, T:0.17
Consensus pattern (21 bp):
GGGAATCGATACCCACTCAAG
Found at i:252322 original size:19 final size:19
Alignment explanation
Indices: 252298--252334 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
252288 GAACGCTAGA
*
252298 GGGGAATCGATACCCCCAG
1 GGGGAACCGATACCCCCAG
*
252317 GGGGAACCGATTCCCCCA
1 GGGGAACCGATACCCCCA
252335 TAATAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.24, C:0.35, G:0.30, T:0.11
Consensus pattern (19 bp):
GGGGAACCGATACCCCCAG
Found at i:252978 original size:23 final size:23
Alignment explanation
Indices: 252946--253007 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
252936 ATTATTATAT
252946 GCACTACGGTGCAATTCTACGCG
1 GCACTACGGTGCAATTCTACGCG
* * *
252969 GCACTCCGGTGCAATTTTACGTG
1 GCACTACGGTGCAATTCTACGCG
*
252992 GCACTAAGGTGCAATT
1 GCACTACGGTGCAATT
253008 ATATGAGCTG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
GCACTACGGTGCAATTCTACGCG
Found at i:259079 original size:20 final size:20
Alignment explanation
Indices: 259054--259091 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
259044 GAACGCTAGA
*
259054 GGGGAATCGATACCCCCAGG
1 GGGGAACCGATACCCCCAGG
*
259074 GGGGAACCGATTCCCCCA
1 GGGGAACCGATACCCCCA
259092 TAATAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.34, G:0.32, T:0.11
Consensus pattern (20 bp):
GGGGAACCGATACCCCCAGG
Found at i:259899 original size:101 final size:102
Alignment explanation
Indices: 259573--259891 Score: 577
Period size: 103 Copynumber: 3.1 Consensus size: 102
259563 GTAGAGGGTC
259573 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACA-GTGTGAAGTCTGGTGAGACACATAC
259638 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
65 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
* * *
259676 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACACGTGTGAGGTCTAGTGAAACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACA-GTGTGAAGTCTGGTGAGACACATAC
*
259741 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
65 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
259779 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACA-TGTGAAGTCTGGTGAGACACATACT
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACAGTGTGAAGTCTGGTGAGACACATACT
259843 TGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
259880 TATGTGGTCCTT
1 TATGTGGTCCTT
259892 ATGGACATTA
Statistics
Matches: 207, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
101 70 0.34
103 137 0.66
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (102 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACAGTGTGAAGTCTGGTGAGACACATACT
TGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
Done.