genome.fa.s8315.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008315.1 Hibiscus syriacus cultivar Beakdansim tig00111011_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178499

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4642--4671	13	2.2	14	94	5	53	23	30	30	16	1.96
4661--4718	17	3.4	17	95	0	98	17	24	41	17	1.90
4642--4671	7	4.4	7	91	8	53	23	30	30	16	1.96
4728--4800	9	7.7	9	73	11	65	28	27	24	19	1.98
4712--4801	19	4.7	19	87	1	99	27	27	24	20	1.99
15795--15891	47	2.0	48	90	2	151	36	21	6	36	1.79
17305--17356	23	2.3	23	93	0	86	5	44	15	34	1.70
21784--21841	17	3.3	18	72	13	59	60	5	1	32	1.29
31638--31670	17	1.9	17	100	0	66	27	0	18	54	1.44
34842--34872	9	3.4	9	95	0	53	61	0	29	9	1.28
45545--45615	22	3.3	21	71	15	65	25	19	21	33	1.97
45533--45596	20	3.1	20	70	16	67	25	21	23	29	1.99
45533--45752	42	5.0	42	74	13	210	28	19	22	29	1.98
45656--45680	13	1.9	13	100	0	50	32	24	20	24	1.98
45432--45802	135	2.7	135	95	0	652	29	19	21	29	1.98
49627--49659	17	1.9	17	100	0	66	27	0	18	54	1.44
52656--52730	28	2.7	28	87	0	105	44	18	2	34	1.64
55410--55486	37	2.1	37	85	4	102	48	1	3	46	1.28
55625--55669	20	2.4	19	85	10	65	20	24	8	46	1.78
55632--55669	20	1.9	20	94	0	67	21	23	10	44	1.83
64820--64932	60	1.9	59	81	5	138	44	4	18	32	1.70
65240--65342	53	1.9	53	88	3	154	31	8	12	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71013--71059	18	2.6	18	90	6	69	17	8	34	40	1.79
71491--71531	17	2.4	17	91	4	64	29	29	9	31	1.89
74468--74515	2	24.0	2	100	0	96	50	0	0	50	1.00
80357--80466	31	3.5	31	97	0	202	39	21	20	19	1.93
84627--84751	31	4.0	31	93	2	198	38	23	18	20	1.93
88303--88347	13	3.5	13	90	0	63	33	20	13	33	1.91
88276--88334	26	2.2	28	81	6	68	35	20	15	28	1.93
98095--98137	21	2.0	22	90	4	70	46	27	9	16	1.77
104529--104553	13	1.9	13	100	0	50	32	24	20	24	1.98
104549--104623	22	3.5	21	70	15	64	25	20	21	33	1.97
104541--104601	20	3.0	20	71	15	61	22	24	22	29	1.99
104684--104783	22	4.8	21	68	19	57	26	19	22	33	1.97
104436--104760	135	2.4	135	86	2	456	28	18	21	31	1.97
104543--104979	177	2.5	177	93	0	757	29	18	21	30	1.97
104841--104865	13	1.9	13	100	0	50	32	24	20	24	1.98
104543--105080	42	12.4	42	73	10	404	28	18	20	31	1.97
105504--105813	53	5.8	53	86	1	390	30	21	25	22	1.99
105504--105813	105	2.9	106	85	2	410	30	21	25	22	1.99
105504--105850	53	6.5	55	83	4	175	30	21	23	24	1.99
109009--109039	15	2.1	15	93	0	53	41	22	9	25	1.84
112082--112152	34	2.1	34	85	12	94	30	9	26	32	1.89
119124--119176	25	2.0	27	92	7	92	41	3	11	43	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129818--129866	3	17.0	3	87	8	75	63	0	0	36	0.95
129824--129912	19	4.9	19	77	18	82	59	1	0	39	1.05
129823--129913	35	2.8	31	78	16	94	59	1	0	39	1.05
131089--131156	28	2.4	28	83	9	77	52	5	4	36	1.46
132317--132363	20	2.3	20	88	0	67	27	27	27	17	1.97
134485--134544	27	2.2	27	100	0	120	36	18	0	45	1.50
134972--135122	31	4.9	31	93	1	243	40	22	17	19	1.91
138197--138228	16	2.0	16	100	0	64	56	25	12	6	1.59
138294--138336	10	4.7	10	78	21	58	58	20	11	9	1.61
138298--138330	16	2.1	16	100	0	66	57	24	12	6	1.57
139550--139639	33	2.7	33	92	0	153	24	20	26	28	1.99
139860--139915	24	2.3	24	90	0	85	55	21	8	14	1.66
140788--140821	14	2.5	14	85	4	52	55	5	2	35	1.39
141987--142083	50	2.0	51	82	8	121	23	18	13	44	1.85
143007--143058	17	3.1	17	86	5	61	61	1	21	15	1.43
143106--143146	2	20.5	2	85	9	57	48	2	0	48	1.14
143188--143314	45	3.1	40	72	18	111	65	1	3	29	1.17
144365--144410	3	15.7	3	82	13	60	67	0	2	30	1.03
144366--144408	17	2.7	16	86	10	61	69	0	2	27	1.00
148083--148169	35	2.5	34	80	12	97	54	10	8	27	1.62
148197--148268	23	3.1	24	70	13	69	65	5	5	23	1.36
149508--149632	31	4.0	31	91	2	189	36	22	20	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150432--150476	21	2.1	21	87	0	63	15	24	28	31	1.96
153640--153751	31	3.6	31	95	0	197	37	23	20	18	1.94
154550--154594	21	2.1	21	87	0	63	15	24	28	31	1.96
160458--160484	2	13.5	2	100	0	54	51	0	0	48	1.00
167422--167490	34	2.1	34	94	2	122	27	15	21	34	1.94
175033--175155	64	1.9	65	86	1	176	28	17	24	29	1.98

Tables:   1

The End!