Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000832.1 Hibiscus syriacus cultivar Beakdansim tig00001608_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141224

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2941--2988
24
2.1
23
84
7
62
18
37
18
25
1.94
5005--5053
23
2.1
23
85
7
64
26
2
14
57
1.48
11738--11834
29
3.3
30
80
13
105
54
3
9
32
1.48
13012--13049
3
12.7
3
83
10
51
60
0
0
39
0.97
13216--13472
45
5.7
45
91
1
410
34
19
22
23
1.96
13216--13659
135
3.4
134
75
11
445
34
19
21
24
1.97
13369--13593
121
1.9
121
89
2
353
34
20
20
24
1.96
13491--13659
45
3.8
44
87
7
234
33
18
20
26
1.96
13324--13638
166
1.9
166
90
2
497
34
19
20
24
1.96
13279--13659
211
1.8
211
90
2
622
34
19
21
24
1.96
14326--14382
22
2.6
22
94
0
96
36
12
15
35
1.85
21108--21154
20
2.3
20
77
0
58
59
8
8
23
1.54
21324--21410
43
2.0
43
82
6
104
34
20
12
32
1.90
23757--23806
26
1.9
26
87
0
73
56
2
12
30
1.47
24992--25020
2
14.5
2
100
0
58
51
0
0
48
1.00
34090--34141
24
2.2
24
82
0
59
11
15
25
48
1.78
34111--34141
14
2.2
14
94
0
53
9
12
22
54
1.67
34100--34161
24
2.6
24
89
5
90
12
12
19
54
1.70
34888--34946
10
5.7
10
73
15
57
10
11
20
57
1.63
34894--34950
16
3.7
16
88
4
82
10
10
19
59
1.59
35012--35044
16
2.1
16
100
0
66
6
12
24
57
1.57
35077--35115
15
2.6
15
95
0
69
0
25
33
41
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36033--36077
15
2.9
15
81
15
56
75
0
0
24
0.80
36024--36077
25
2.1
26
89
3
83
72
0
3
24
1.01
36037--36071
10
3.5
10
92
7
54
74
0
0
25
0.82
36049--36083
15
2.4
15
90
4
54
71
0
2
25
1.00
36650--36694
22
2.0
22
82
0
54
2
6
15
75
1.11
37179--37221
10
3.7
11
82
17
52
76
0
6
16
0.99
37262--37314
21
2.5
21
71
0
52
47
7
1
43
1.42
37292--37375
26
3.3
26
70
25
72
36
9
7
46
1.64
37305--37375
26
2.9
24
75
8
79
36
9
7
46
1.64
37355--37492
38
3.5
39
85
4
181
42
8
4
44
1.55
37426--37512
38
2.3
38
83
0
102
50
9
3
36
1.51
37499--37538
22
2.0
21
85
14
57
47
12
0
40
1.41
39463--39554
37
2.5
37
94
0
157
22
23
17
35
1.95
39840--39920
42
2.0
41
85
7
110
35
20
17
25
1.95
39653--40175
235
2.2
237
86
1
728
34
18
14
32
1.91
44669--44894
75
3.1
73
85
8
257
30
1
11
56
1.43
45237--45282
18
2.6
18
92
0
74
32
4
19
43
1.71
50277--50338
32
2.0
31
84
9
81
27
0
9
62
1.26
50243--50447
76
2.8
72
83
8
234
29
0
11
57
1.41
51022--51055
17
2.0
17
88
0
50
23
0
2
73
0.97
54861--54919
24
2.4
25
72
10
61
54
0
11
33
1.37
54857--54957
40
2.6
36
74
17
87
53
0
10
34
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54978--55016
2
19.5
2
100
0
78
51
0
0
48
1.00
58467--58491
8
3.1
8
100
0
50
0
0
52
48
1.00
70378--70513
42
3.2
43
91
3
222
51
10
13
24
1.72
70378--70555
85
2.1
85
83
5
218
51
9
13
25
1.71
70378--70737
43
8.4
42
78
8
250
49
7
17
25
1.72
70333--70736
43
9.4
43
75
11
230
49
7
17
25
1.72
70336--70755
85
4.9
84
74
11
203
50
7
17
25
1.71
86475--86526
20
2.6
19
82
14
61
32
19
25
23
1.97
90865--90889
11
2.3
11
100
0
50
16
36
8
40
1.77
97373--97427
2
27.5
2
96
0
101
0
50
1
47
1.11
105444--105493
24
2.1
24
88
7
75
58
14
2
26
1.47
106638--106681
14
3.3
13
84
12
54
2
15
0
81
0.78
111040--111089
24
2.1
24
88
7
75
58
14
2
26
1.47
116071--116146
40
1.9
40
91
0
125
52
19
11
15
1.73
130842--130876
18
1.9
18
94
0
61
28
20
25
25
1.99
132054--132276
74
3.1
71
81
10
254
31
1
11
55
1.44
132090--132279
71
2.6
71
86
7
249
32
0
13
54
1.43
132715--132742
14
2.0
14
100
0
56
57
14
21
7
1.61
135223--135269
19
2.4
19
86
10
60
23
10
0
65
1.23

Tables:   1

The End!