genome.fa.s8320.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008320.1 Hibiscus syriacus cultivar Beakdansim tig00111023_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  269452

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1691--1737	24	2.0	24	87	8	69	38	21	14	25	1.92
2418--2783	20	18.5	20	86	6	440	20	19	25	34	1.96
2418--2783	119	3.1	117	85	5	427	20	19	25	34	1.96
2418--2783	99	3.7	100	86	5	458	20	19	25	34	1.96
28808--28887	20	3.8	20	77	9	70	15	23	35	26	1.94
41341--41365	2	12.5	2	100	0	50	48	0	0	52	1.00
42300--42650	43	8.1	42	82	4	396	34	18	22	25	1.96
42280--42636	87	4.1	83	76	8	338	33	18	22	24	1.96
46125--46436	41	7.6	41	75	8	226	38	20	16	25	1.92
46323--46464	40	3.5	39	81	2	122	37	16	16	29	1.91
46921--46973	25	2.1	25	100	0	106	24	41	15	18	1.89
47792--47818	2	13.5	2	100	0	54	48	0	0	51	1.00
48131--48176	2	25.0	2	83	16	64	50	0	0	50	1.00
54491--54529	13	3.0	13	88	0	60	25	23	17	33	1.96
57133--57313	43	4.2	43	85	1	229	33	20	22	23	1.97
59692--59730	20	2.0	20	100	0	78	23	30	20	25	1.98
61510--61733	43	5.3	41	83	4	209	33	19	18	29	1.96
61510--61747	86	2.8	84	83	5	252	33	19	18	28	1.95
61718--61821	41	2.5	41	82	3	120	35	17	13	33	1.89
61758--61915	82	1.9	82	84	2	210	34	20	15	29	1.93
71056--71120	2	33.0	2	96	3	123	50	0	0	49	1.00
78415--78547	21	6.5	20	73	13	85	36	22	16	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83171--83356	98	1.9	99	94	1	329	38	1	19	40	1.61
83854--83956	36	2.9	36	97	0	188	25	15	16	42	1.87
86090--86182	18	4.9	18	80	14	89	26	30	19	23	1.98
86119--86185	20	3.5	20	78	12	77	28	28	19	23	1.98
86089--86182	38	2.5	38	82	6	127	26	29	19	24	1.98
91577--91645	18	3.8	17	75	16	57	31	30	17	20	1.95
91571--91657	38	2.3	38	74	4	95	27	28	18	25	1.98
92060--92099	21	1.9	21	89	0	62	40	12	2	45	1.56
93507--93566	12	5.0	12	76	8	68	50	18	15	16	1.79
93497--93566	24	2.9	24	82	0	86	52	17	14	15	1.74
109128--109179	21	2.4	22	77	6	61	42	21	17	19	1.89
109229--109271	21	2.1	21	91	4	70	37	20	13	27	1.91
123190--123318	4	32.2	4	92	3	215	48	25	0	24	1.56
126131--126884	189	4.0	189	91	1	1129	40	18	14	26	1.89
128454--128483	15	2.0	15	100	0	60	60	0	20	20	1.37
128457--128491	15	2.3	15	90	0	52	65	0	17	17	1.27
128596--128671	8	8.5	8	73	21	62	77	1	2	18	0.95
128587--128670	43	2.0	43	82	0	105	76	1	4	17	1.03
128574--128668	19	5.1	18	76	12	84	75	1	5	17	1.04
128618--128702	33	2.5	33	79	9	100	70	0	2	27	0.99
128607--128702	29	3.3	28	81	10	95	71	1	2	25	1.03
128571--128702	28	4.6	28	78	15	94	71	0	4	22	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128747--128800	21	2.7	20	75	18	58	64	5	5	24	1.36
128854--128892	14	2.7	15	88	4	53	71	0	0	28	0.86
129074--129173	35	2.8	36	86	6	130	31	16	15	38	1.89
129634--131027	105	13.3	105	84	6	1476	21	19	25	33	1.97
131649--131720	37	1.9	37	91	5	119	41	11	19	27	1.85
131735--131854	35	3.4	35	72	14	102	37	15	21	25	1.93
132285--132320	18	2.0	18	94	0	63	41	33	8	16	1.78
132721--132771	22	2.3	22	96	0	93	25	11	27	35	1.91
133425--133496	8	9.1	7	75	19	54	0	15	8	76	1.01
133469--133502	16	2.1	16	89	10	52	0	14	8	76	1.01
137054--137083	15	2.0	15	93	0	51	60	0	16	23	1.36
137228--137309	41	2.0	41	88	9	123	69	0	2	28	1.01
137237--137303	35	2.0	35	85	11	95	70	0	2	26	1.02
137293--137329	2	18.5	2	100	0	74	51	0	0	48	1.00
137374--137441	23	2.9	23	79	14	68	70	4	4	20	1.22
137710--137809	35	2.8	36	86	6	130	31	16	15	38	1.89
139056--139117	28	2.2	29	91	2	99	43	14	9	32	1.78
139945--140041	31	3.2	29	72	12	77	48	9	2	40	1.47
152557--152690	67	2.0	67	95	0	241	21	17	29	31	1.97
152832--152901	3	24.0	3	77	11	74	58	0	0	41	0.98
152821--152901	18	4.3	18	82	14	94	56	0	0	43	0.99
153058--153770	76	9.4	76	94	0	1230	34	22	19	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153058--153770	303	2.3	304	94	0	1248	34	22	19	23	1.96
154446--154544	22	4.5	22	89	5	164	39	14	12	34	1.83
154446--154546	44	2.3	44	96	0	184	39	13	12	33	1.83
159240--159329	17	5.9	17	67	28	67	6	18	0	74	1.03
159237--159331	41	2.3	41	92	1	154	6	18	0	74	1.02
159224--159358	33	4.0	32	74	18	91	5	18	1	74	1.10
159314--159365	27	1.9	27	100	0	104	5	15	5	73	1.22
162530--162568	20	2.0	20	84	0	51	53	7	12	25	1.65
165858--165903	21	2.1	23	84	15	62	2	26	15	56	1.50
166370--166439	3	24.0	3	75	16	67	60	0	0	40	0.97
166359--166439	18	4.3	18	80	14	85	58	0	0	41	0.98
170381--170444	23	2.9	22	77	9	67	62	3	0	34	1.11
171020--171071	22	2.5	21	82	14	63	25	0	3	71	1.03
180450--180493	23	1.9	23	90	0	70	61	18	9	11	1.55
180436--180493	13	4.6	13	73	18	52	60	20	10	8	1.55
180752--180780	14	2.1	14	100	0	58	55	17	13	13	1.70
195072--195144	27	2.7	27	78	6	76	50	1	0	47	1.09
195740--195842	23	4.5	23	75	13	88	44	16	16	22	1.86
206675--206708	16	2.1	17	94	5	61	52	5	0	41	1.25
208122--208283	80	2.0	80	97	2	308	27	19	17	34	1.95
211212--211279	35	2.1	32	86	10	93	38	20	7	33	1.81
216313--216370	20	2.6	22	86	10	75	31	20	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220546--220577	15	2.1	15	94	0	55	6	25	15	53	1.65
223182--223231	24	2.1	24	100	0	100	26	14	12	48	1.78
225031--225094	28	2.3	28	94	0	110	40	6	23	29	1.79
225563--225595	16	2.0	17	94	5	59	36	6	21	36	1.78
239303--239345	21	2.1	20	83	12	52	37	4	16	41	1.69
244296--244332	19	1.9	19	88	0	56	32	13	16	37	1.87
257777--257807	2	15.5	2	100	0	62	51	0	48	0	1.00
259014--259077	31	2.1	30	85	2	83	56	4	1	37	1.30
259036--259226	95	2.0	95	96	0	355	43	8	6	40	1.61
259680--259708	2	14.5	2	100	0	58	51	0	0	48	1.00
261438--262150	8	89.1	8	93	0	724	39	24	10	25	1.87
268182--268217	18	2.0	18	88	0	54	50	8	5	36	1.56
268754--268853	33	3.0	33	94	0	164	47	14	6	33	1.68
268848--268889	21	2.0	21	95	0	75	47	7	14	30	1.71

Tables:   1

The End!