genome.fa.s8321.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008321.1 Hibiscus syriacus cultivar Beakdansim tig00111024_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74815

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423--466	17	2.6	17	96	0	79	38	0	13	47	1.43
537--571	18	1.9	18	88	0	52	51	5	5	37	1.50
2380--2420	21	2.0	21	95	0	73	48	4	14	31	1.65
4794--4849	27	2.1	26	81	15	69	21	12	23	42	1.86
6000--6040	2	20.5	2	100	0	82	0	48	0	51	1.00
9049--9097	2	24.5	2	95	0	89	46	0	2	51	1.12
13613--13660	17	2.7	18	77	6	62	31	10	4	54	1.53
17526--17568	19	2.2	20	88	12	63	44	0	2	53	1.13
18738--18962	64	3.5	64	83	4	267	32	20	19	27	1.96
19714--19936	103	2.2	103	99	0	437	25	12	25	36	1.91
19948--20010	23	2.7	23	92	0	99	19	28	26	25	1.98
24520--24571	19	2.7	19	100	0	104	28	17	26	26	1.97
24537--24699	64	2.5	64	81	9	181	34	20	19	25	1.96
25451--25673	103	2.2	103	99	0	437	25	12	25	37	1.91
25685--25747	23	2.7	23	85	0	81	20	25	26	26	1.99
30229--30449	64	3.5	64	81	6	218	33	19	18	28	1.95
31200--31422	103	2.2	103	100	0	446	25	13	25	36	1.91
31434--31496	23	2.7	23	82	0	72	19	28	26	25	1.98
35435--35493	29	2.0	29	100	0	118	23	13	13	49	1.78
40115--40173	29	2.0	29	100	0	118	23	13	13	49	1.78
44388--44515	38	3.5	37	78	16	122	42	3	7	47	1.46
44413--44613	36	5.4	37	77	11	173	44	4	6	44	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44494--44595	38	2.8	35	82	7	98	47	4	6	41	1.52
44600--44629	15	1.9	16	93	6	53	40	0	6	53	1.27
44572--44648	25	3.0	25	72	7	73	45	2	5	46	1.39
45478--45522	21	2.1	21	87	0	63	31	28	24	15	1.96
46389--46542	31	5.0	31	93	1	256	22	20	20	37	1.95
49505--49549	21	2.1	21	87	0	63	31	28	24	15	1.96
50414--50567	31	5.0	31	93	1	256	22	20	20	37	1.95
53940--54002	26	2.4	26	97	0	117	44	12	19	23	1.85
55456--55525	3	22.3	3	85	8	79	67	0	0	32	0.91
55469--55525	22	2.5	22	94	5	96	68	0	0	31	0.90
55470--55508	19	2.1	19	100	0	78	69	0	0	30	0.89
55787--55834	23	2.1	23	88	0	69	35	12	18	33	1.89
55874--56538	333	2.0	334	97	0	1269	38	11	7	42	1.69
56585--56657	23	3.2	23	82	0	83	41	19	5	34	1.74
57001--57066	25	2.6	25	80	0	87	42	13	9	34	1.76
59567--60231	183	3.6	183	98	0	1267	34	16	14	34	1.89
61434--61508	3	25.0	3	73	0	60	22	34	6	36	1.81
61438--61520	12	6.9	12	83	0	94	20	34	8	36	1.83
61442--61520	36	2.2	36	90	0	122	20	35	8	35	1.84
61462--61523	18	3.4	18	79	0	79	17	35	9	37	1.83
61438--61523	6	14.3	6	77	0	64	19	34	8	37	1.82
62962--64045	198	5.5	198	98	0	2098	31	16	15	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64170--64218	19	2.6	19	93	0	80	57	10	2	30	1.43
66009--66074	33	2.0	33	90	0	105	22	48	0	28	1.51
66108--66172	21	3.1	21	80	6	69	15	29	15	40	1.88
68398--68440	20	2.3	18	85	14	61	20	16	11	51	1.75
68403--68449	20	2.4	19	82	10	67	19	17	10	53	1.72
68571--68616	20	2.3	20	89	10	76	17	17	10	54	1.70
73662--73730	34	2.1	34	97	2	131	39	15	11	33	1.84

Tables:   1

The End!