Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008323.1 Hibiscus syriacus cultivar Beakdansim tig00111027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5101972
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 14 of 26
Found at i:2646809 original size:36 final size:36
Alignment explanation
Indices: 2646757--2646849 Score: 150
Period size: 36 Copynumber: 2.6 Consensus size: 36
2646747 CAGCATCGCC
* *
2646757 AAAGAGAGTTCGTAATGAGAAGAACTCATCTGAAGA
1 AAAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
*
2646793 AAAGAAAGTTCATAATGAGAAGAACTCATTTGAAGA
1 AAAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
*
2646829 AAAGAAAGTTCATAATAAGAA
1 AAAGAAAGTTCATAATGAGAA
2646850 TAGCTTATTC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 53 1.00
ACGTcount: A:0.51, C:0.09, G:0.20, T:0.20
Consensus pattern (36 bp):
AAAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
Found at i:2647111 original size:3 final size:3
Alignment explanation
Indices: 2647103--2647177 Score: 105
Period size: 3 Copynumber: 25.0 Consensus size: 3
2647093 ATTGATTTAT
* * *
2647103 TTA TTA TTA TTA TTA TTA TTA TAA TAA TTA TTA TTA TTA TTA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
2647151 TTA TAA ATA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
2647178 AATATATTAA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:2647220 original size:13 final size:13
Alignment explanation
Indices: 2647202--2647231 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
2647192 ATATATAAAT
2647202 AATAATAAAATAA
1 AATAATAAAATAA
2647215 AATAATAAAATAA
1 AATAATAAAATAA
2647228 AATA
1 AATA
2647232 CAAGCCCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AATAATAAAATAA
Found at i:2661537 original size:41 final size:41
Alignment explanation
Indices: 2661486--2661573 Score: 149
Period size: 41 Copynumber: 2.1 Consensus size: 41
2661476 CCGAAGATAT
*
2661486 ATAAATATTTTACATTATTTAAAATAAATGTCAAAATATAA
1 ATAAATATTTTACATCATTTAAAATAAATGTCAAAATATAA
**
2661527 ATAAATATTTTACATCATTTAAAATAAATGTTGAAATATAA
1 ATAAATATTTTACATCATTTAAAATAAATGTCAAAATATAA
2661568 ATAAAT
1 ATAAAT
2661574 GTTGAAATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (41 bp):
ATAAATATTTTACATCATTTAAAATAAATGTCAAAATATAA
Found at i:2661587 original size:19 final size:19
Alignment explanation
Indices: 2661543--2661588 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
2661533 ATTTTACATC
*
2661543 ATTTAAAATAAATGTTGAA
1 ATTTTAAATAAATGTTGAA
*
2661562 A-TATAAATAAATGTTGAA
1 ATTTTAAATAAATGTTGAA
2661580 ATTTTAAAT
1 ATTTTAAAT
2661589 TAATATCGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (19 bp):
ATTTTAAATAAATGTTGAA
Found at i:2665317 original size:31 final size:30
Alignment explanation
Indices: 2665271--2665350 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 30
2665261 TTTGATAATA
* *
2665271 TAATAATTATTTTATAGTATTTGGATAAATT
1 TAATAA-TATTTTATAATATTTGAATAAATT
* * *
2665302 TATTAATAATTTTATAATCTTTTAATAAATT
1 TAATAAT-ATTTTATAATATTTGAATAAATT
2665333 TAATAAGTATTTTATAAT
1 TAATAA-TATTTTATAAT
2665351 TTTTAAACTT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
30 1 0.02
31 39 0.95
32 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (30 bp):
TAATAATATTTTATAATATTTGAATAAATT
Found at i:2665318 original size:20 final size:20
Alignment explanation
Indices: 2665295--2665357 Score: 53
Period size: 19 Copynumber: 3.2 Consensus size: 20
2665285 TAGTATTTGG
2665295 ATAAAT-TTATTAATAATTTT
1 ATAAATATT-TTAATAATTTT
* *
2665315 AT-AATCTTTTAATAAATTTA
1 ATAAATATTTTAAT-AATTTT
*
2665335 ATAAGTATTTT-ATAATTTT
1 ATAAATATTTTAATAATTTT
2665354 -TAAA
1 ATAAA
2665358 CTTTATTGAC
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
18 3 0.09
19 13 0.37
20 13 0.37
21 6 0.17
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (20 bp):
ATAAATATTTTAATAATTTT
Found at i:2665328 original size:19 final size:20
Alignment explanation
Indices: 2665304--2665353 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
2665294 GATAAATTTA
*
2665304 TTAATAATTTTATAA-TCTT
1 TTAATAATTTTATAAGTATT
*
2665323 TTAATAAATTTAATAAGTATT
1 TTAAT-AATTTTATAAGTATT
2665344 TT-ATAATTTT
1 TTAATAATTTT
2665354 TAAACTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 10 0.38
20 11 0.42
21 5 0.19
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (20 bp):
TTAATAATTTTATAAGTATT
Found at i:2677293 original size:51 final size:51
Alignment explanation
Indices: 2677210--2677309 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 51
2677200 ACGTAGTTAA
* **
2677210 AAAGCCTAATTACCGATGTAGATAATCGTTGTTACTTAGGGAAATTTAGTG
1 AAAGCCTAATTACCGATGTAGATAATAGTTGTTACTTAGAAAAATTTAGTG
* *
2677261 AAAGCCTAATTACCGATGTAGGTAATATTTGTTACTTAGAAAAATTTAG
1 AAAGCCTAATTACCGATGTAGATAATAGTTGTTACTTAGAAAAATTTAG
2677310 GTAATCGTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (51 bp):
AAAGCCTAATTACCGATGTAGATAATAGTTGTTACTTAGAAAAATTTAGTG
Found at i:2678897 original size:2 final size:2
Alignment explanation
Indices: 2678890--2678918 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2678880 TACTCTCACC
2678890 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2678919 GTATCTACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2689215 original size:35 final size:35
Alignment explanation
Indices: 2689169--2689240 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
2689159 AAGGACAGGG
*
2689169 AGTTATCTAAAAAGGGCAGCAAAGATGGTGTTCAC
1 AGTTACCTAAAAAGGGCAGCAAAGATGGTGTTCAC
*
2689204 AGTTACCTAAAAAGGGCAGTAAAGATGGTGTTCAC
1 AGTTACCTAAAAAGGGCAGCAAAGATGGTGTTCAC
2689239 AG
1 AG
2689241 CCCCCAAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (35 bp):
AGTTACCTAAAAAGGGCAGCAAAGATGGTGTTCAC
Found at i:2692389 original size:17 final size:18
Alignment explanation
Indices: 2692364--2692402 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
2692354 ATATTATATA
*
2692364 AAAACAAAATAATAC-TC
1 AAAACAAAAAAATACATC
*
2692381 AAAATAAAAAAATACATC
1 AAAACAAAAAAATACATC
2692399 AAAA
1 AAAA
2692403 ATTGTATGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.72, C:0.13, G:0.00, T:0.15
Consensus pattern (18 bp):
AAAACAAAAAAATACATC
Found at i:2700417 original size:71 final size:70
Alignment explanation
Indices: 2700331--2700466 Score: 254
Period size: 71 Copynumber: 1.9 Consensus size: 70
2700321 GGCGTGGATA
*
2700331 TTCAATCCCTAATCTTTCACATATAAGATTCTTAGATATAATATATTTAGATTAAAATATCTTCT
1 TTCAATCCCTAATCTTTCACATATAAGATTCTTAGATATAAGATATTTAGATTAAAATATCTTCT
2700396 TATAG
66 TATAG
2700401 TTCATATCCCTAATCTTTCACATATAAGATTCTTAGATATAAGATATTTAGATTAAAATATCTTC
1 TTCA-ATCCCTAATCTTTCACATATAAGATTCTTAGATATAAGATATTTAGATTAAAATATCTTC
2700466 T
65 T
2700467 CATGTATGAA
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
70 4 0.06
71 60 0.94
ACGTcount: A:0.37, C:0.15, G:0.06, T:0.43
Consensus pattern (70 bp):
TTCAATCCCTAATCTTTCACATATAAGATTCTTAGATATAAGATATTTAGATTAAAATATCTTCT
TATAG
Found at i:2701505 original size:21 final size:22
Alignment explanation
Indices: 2701462--2701507 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
2701452 ATAACGTAAC
* *
2701462 ATTTTAAATTAGATATAATAAT
1 ATTTTAAATTAGAAATAAAAAT
*
2701484 ATTTTAAGTTA-AAATAAAAAT
1 ATTTTAAATTAGAAATAAAAAT
2701505 ATT
1 ATT
2701508 ATATTTTTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.43
Consensus pattern (22 bp):
ATTTTAAATTAGAAATAAAAAT
Found at i:2702264 original size:19 final size:19
Alignment explanation
Indices: 2702242--2702279 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
2702232 TTATAAAACA
*
2702242 TTATATAAATATAAATTTT
1 TTATATAAATAGAAATTTT
*
2702261 TTATATAATTAGAAATTTT
1 TTATATAAATAGAAATTTT
2702280 GATGCACGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (19 bp):
TTATATAAATAGAAATTTT
Found at i:2706615 original size:2 final size:2
Alignment explanation
Indices: 2706608--2706639 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
2706598 ATATTATTAG
2706608 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2706640 CTTTTTAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2708875 original size:20 final size:20
Alignment explanation
Indices: 2708847--2708884 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
2708837 TGGTTTTTCA
* *
2708847 AAATTTATTTTTGAAATTTT
1 AAATATATTTTTAAAATTTT
2708867 AAATATATTTTTAAAATT
1 AAATATATTTTTAAAATT
2708885 ATATTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
AAATATATTTTTAAAATTTT
Found at i:2709112 original size:27 final size:26
Alignment explanation
Indices: 2709045--2709116 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 26
2709035 AAAATTTGAG
*
2709045 AATTAATAAA-TTCATATTTAAAAAAAT
1 AATT-ATAAAGTT-ATAATTAAAAAAAT
** * *
2709072 AATTATAATTTTATGAATTAAAAGACT
1 AATTATAAAGTTAT-AATTAAAAAAAT
2709099 AATTATAAAGTTATAATT
1 AATTATAAAGTTATAATT
2709117 TTTTAAAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
26 10 0.27
27 27 0.73
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.40
Consensus pattern (26 bp):
AATTATAAAGTTATAATTAAAAAAAT
Found at i:2709170 original size:2 final size:2
Alignment explanation
Indices: 2709163--2709190 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2709153 ATCATGAATT
2709163 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2709191 ATTATTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2720479 original size:17 final size:16
Alignment explanation
Indices: 2720448--2720481 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
2720438 CACGTGAGGA
2720448 TTATTTTCTTCTTATT
1 TTATTTTCTTCTTATT
*
2720464 TTATTTATCTTTTTATT
1 TTATTT-TCTTCTTATT
2720481 T
1 T
2720482 ACTGTCTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTTCTTCTTATT
Found at i:2720876 original size:19 final size:19
Alignment explanation
Indices: 2720854--2720899 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
2720844 TTCATGCATT
*
2720854 GATGCACTCTTAGTGCACC
1 GATGCACTCTTAGTGAACC
2720873 GATGCACTCTTAGTGAACC
1 GATGCACTCTTAGTGAACC
2720892 GATGCACT
1 GATGCACT
2720900 AAGTGTTCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (19 bp):
GATGCACTCTTAGTGAACC
Found at i:2726230 original size:21 final size:22
Alignment explanation
Indices: 2726204--2726256 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
2726194 CTGTGCTTAA
2726204 TGCATCGAT-ACACCATGAAGG
1 TGCATCGATCACACCATGAAGG
* * *
2726225 TGCATCGATGCACTCCTTGAATG
1 TGCATCGAT-CACACCATGAAGG
2726248 TGCATCGAT
1 TGCATCGAT
2726257 GTACAAGGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 9 0.33
23 18 0.67
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (22 bp):
TGCATCGATCACACCATGAAGG
Found at i:2730945 original size:17 final size:17
Alignment explanation
Indices: 2730923--2730956 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
2730913 AATCCTTTAA
*
2730923 TTCCTTTTCCATTTACT
1 TTCCTTATCCATTTACT
*
2730940 TTCCTTATCCCTTTACT
1 TTCCTTATCCATTTACT
2730957 CCTCCACAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.32, G:0.00, T:0.56
Consensus pattern (17 bp):
TTCCTTATCCATTTACT
Found at i:2732511 original size:19 final size:19
Alignment explanation
Indices: 2732487--2732525 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
2732477 ACATGCCAAC
*
2732487 TACATTTATTATAACAAAA
1 TACATTTACTATAACAAAA
*
2732506 TACATTTACTATAACCAAA
1 TACATTTACTATAACAAAA
2732525 T
1 T
2732526 TGGTAAAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (19 bp):
TACATTTACTATAACAAAA
Found at i:2734558 original size:26 final size:26
Alignment explanation
Indices: 2734529--2734581 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
2734519 ATAATAATCG
* *
2734529 AACTCTTAGTAA-AAGAAAATTAATTA
1 AACTCTTA-TAATAAAAAAATAAATTA
*
2734555 AACTTTTATAATAAAAAAATAAATTA
1 AACTCTTATAATAAAAAAATAAATTA
2734581 A
1 A
2734582 GTTCTGTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.32
Consensus pattern (26 bp):
AACTCTTATAATAAAAAAATAAATTA
Found at i:2738073 original size:22 final size:22
Alignment explanation
Indices: 2738045--2738104 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
2738035 GGCATGTGAA
*
2738045 ATTTGTCCCGAATGACCTATGT
1 ATTTGTCCCGAAGGACCTATGT
*
2738067 ATTTGTCCCGAAGGACCTCTGT
1 ATTTGTCCCGAAGGACCTATGT
* *
2738089 ATATATCCCGAAGGAC
1 ATTTGTCCCGAAGGAC
2738105 AGCGTAGACC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (22 bp):
ATTTGTCCCGAAGGACCTATGT
Found at i:2744466 original size:183 final size:183
Alignment explanation
Indices: 2744182--2744627 Score: 694
Period size: 183 Copynumber: 2.4 Consensus size: 183
2744172 AAAAGTATCA
* * * * *
2744182 ATACTTTCAACATATCTGGTAGCTCTTTACAGGTTTTTTCATAATGAAACTGATTTTTTCATATT
1 ATACTTTCAACATATCTGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGATTTTATCATATT
*
2744247 TTTACCTGTTATATTGTTATGTATCGATACATTTTTATAAAGTATCGATACTTTATAAGCGCTAT
66 TTTACCTGTTATATTGTTATGTATCGATACATTTTTATAAAGTATAGATACTTTATAAGCGCTAT
* *
2744312 TACTGCTTTTCTTTTAAATTCCAAAAGTGTCGATACTTAATTAAATGGAATTG
131 TACTGCTTTTCTTTTAAATTCCAAAAGTGTCAATACTTAATTAAATGGAATCG
* * * *
2744365 ATACTTTCAATATATCCGATAGCGCTTTACCGGTTTTGTCATAATGAAACCAATTTTATCATATT
1 ATACTTTCAACATATCTGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGATTTTATCATATT
* * *
2744430 TTTACATGTTATATTGTTATGTATCGATACATTTTTATAAAGTATAGATACTTTATAGGGGCTAT
66 TTTACCTGTTATATTGTTATGTATCGATACATTTTTATAAAGTATAGATACTTTATAAGCGCTAT
* * *
2744495 TACTGCTTTTCTTTTAAATTCTAAAAGTGTTAATACTTATTTAAATGGAATCG
131 TACTGCTTTTCTTTTAAATTCCAAAAGTGTCAATACTTAATTAAATGGAATCG
* * * *
2744548 ATACTTTCAACATATTTGGTAGCGCTTTACCGGTTTTGCCATTATGAAACCGGTTTTATCATATT
1 ATACTTTCAACATATCTGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGATTTTATCATATT
2744613 TTTACCTGTTATATT
66 TTTACCTGTTATATT
2744628 AGCAACCTTT
Statistics
Matches: 236, Mismatches: 27, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
183 236 1.00
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44
Consensus pattern (183 bp):
ATACTTTCAACATATCTGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGATTTTATCATATT
TTTACCTGTTATATTGTTATGTATCGATACATTTTTATAAAGTATAGATACTTTATAAGCGCTAT
TACTGCTTTTCTTTTAAATTCCAAAAGTGTCAATACTTAATTAAATGGAATCG
Found at i:2744709 original size:74 final size:74
Alignment explanation
Indices: 2744624--2745082 Score: 617
Period size: 73 Copynumber: 6.3 Consensus size: 74
2744614 TTACCTGTTA
* *
2744624 TATTAGCAACCTTTAAAAAACCCGGTAGGTAGTTTAATGTAATAGGTAGCGCCTATTTTTTTTAC
1 TATTAGCAACCTTTAAAAAAACCGGTAGGTATTTTAATGTAATAGGTAGCGCCTATTTTTTTTAC
2744689 CGTTTACAT
66 CGTTTACAT
* * * *
2744698 TATTAGCAACCTTCAAAAAATCCGGTAGGTATTTTAATATAATAGGTAACGCCTA--TTTTTTAC
1 TATTAGCAACCTTTAAAAAAACCGGTAGGTATTTTAATGTAATAGGTAGCGCCTATTTTTTTTAC
*
2744761 TGTTTACAT
66 CGTTTACAT
* *
2744770 TATTAGCAACC-TTAAAAAAAACGGTAGGTATTTTAATGTAATAGGTAGCGTCTATTTTTTTTAC
1 TATTAGCAACCTTTAAAAAAACCGGTAGGTATTTTAATGTAATAGGTAGCGCCTATTTTTTTTAC
2744834 CGTTTACAT
66 CGTTTACAT
*** * * * *
2744843 TATTAGCAACC-TTAAAAAAACATATATGTATTTTAATATAATAGGTAGAGCCTATTTTTTATAC
1 TATTAGCAACCTTTAAAAAAACCGGTAGGTATTTTAATGTAATAGGTAGCGCCTATTTTTTTTAC
*
2744907 GGTTTACAT
66 CGTTTACAT
* * * * * *
2744916 TATTAGAAACCTTAAAAAAAATCAGTAGGTATTTTAATGTAATAGGTAACGCATA-TTTTTTTAC
1 TATTAGCAACCTTTAAAAAAACCGGTAGGTATTTTAATGTAATAGGTAGCGCCTATTTTTTTTAC
*
2744980 CGTATACAT
66 CGTTTACAT
* *
2744989 TATTAGCAACCTTT-AAAAAACCGATAGGTACTTTAATGTAATAGGTAGCGCCTATTTTTTTTTT
1 TATTAGCAACCTTTAAAAAAACCGGTAGGTATTTTAATGTAATAGGTAGCGCCTA--TTTTTTTT
2745053 ACCGTTTACAT
64 ACCGTTTACAT
2745064 TATTAGCAACC-TTAAAAAA
1 TATTAGCAACCTTTAAAAAA
2745083 TCAGTATTTC
Statistics
Matches: 332, Mismatches: 46, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
71 37 0.11
72 61 0.18
73 116 0.35
74 85 0.26
75 33 0.10
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (74 bp):
TATTAGCAACCTTTAAAAAAACCGGTAGGTATTTTAATGTAATAGGTAGCGCCTATTTTTTTTAC
CGTTTACAT
Found at i:2748518 original size:64 final size:64
Alignment explanation
Indices: 2748439--2748567 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
2748429 CTGGCTGAGT
2748439 TAATATTTTTGAATGGCAGTATATATCGGGGACATGAAATTATGACTGACATAAATGTTATGCC
1 TAATATTTTTGAATGGCAGTATATATCGGGGACATGAAATTATGACTGACATAAATGTTATGCC
2748503 TAATATTTTTGAATGGCAGTATATATCGGGGACATGAAATTATGACTGACATAAATGTTATGCC
1 TAATATTTTTGAATGGCAGTATATATCGGGGACATGAAATTATGACTGACATAAATGTTATGCC
2748567 T
1 T
2748568 TGGAATTGTT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.35
Consensus pattern (64 bp):
TAATATTTTTGAATGGCAGTATATATCGGGGACATGAAATTATGACTGACATAAATGTTATGCC
Found at i:2750442 original size:20 final size:20
Alignment explanation
Indices: 2750419--2750483 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
2750409 CTCGATATTC
2750419 AAATTTGCAACGTGAAAATA
1 AAATTTGCAACGTGAAAATA
*
2750439 AAATTTGCAACTTGAAAATA
1 AAATTTGCAACGTGAAAATA
* *
2750459 AAATTCGCAACGTGAAAATC
1 AAATTTGCAACGTGAAAATA
2750479 AAATT
1 AAATT
2750484 CACAACGCGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.26
Consensus pattern (20 bp):
AAATTTGCAACGTGAAAATA
Found at i:2750484 original size:20 final size:20
Alignment explanation
Indices: 2750397--2750509 Score: 102
Period size: 20 Copynumber: 5.7 Consensus size: 20
2750387 GATTCGTAAC
* *
2750397 TCAAATTCGCAAC-TCGATAT
1 TCAAATTCGCAACGT-GAAAA
*
2750417 TCAAATTTGCAACGTGAAAA
1 TCAAATTCGCAACGTGAAAA
* * *
2750437 TAAAATTTGCAACTTGAAAA
1 TCAAATTCGCAACGTGAAAA
*
2750457 TAAAATTCGCAACGTGAAAA
1 TCAAATTCGCAACGTGAAAA
* * *
2750477 TCAAATTCACAACGCGAAAT
1 TCAAATTCGCAACGTGAAAA
**
2750497 TCGTATTCGCAAC
1 TCAAATTCGCAAC
2750510 ACGAAATTCG
Statistics
Matches: 78, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
20 77 0.99
21 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.26
Consensus pattern (20 bp):
TCAAATTCGCAACGTGAAAA
Found at i:2750514 original size:20 final size:20
Alignment explanation
Indices: 2750481--2750519 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2750471 TGAAAATCAA
*
2750481 ATTCACAACGCGAAATTCGT
1 ATTCACAACACGAAATTCGT
*
2750501 ATTCGCAACACGAAATTCG
1 ATTCACAACACGAAATTCG
2750520 CAATGCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (20 bp):
ATTCACAACACGAAATTCGT
Found at i:2750594 original size:16 final size:16
Alignment explanation
Indices: 2750573--2750608 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
2750563 AGCAGATTGA
* *
2750573 AATTAAACAACAAATC
1 AATTAAACAAAAAAAC
2750589 AATTAAACAAAAAAAC
1 AATTAAACAAAAAAAC
2750605 AATT
1 AATT
2750609 TTTATTTACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.67, C:0.14, G:0.00, T:0.19
Consensus pattern (16 bp):
AATTAAACAAAAAAAC
Found at i:2750800 original size:18 final size:18
Alignment explanation
Indices: 2750777--2750812 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
2750767 AATATCGAAA
2750777 CCACAACCCTACTGCACC
1 CCACAACCCTACTGCACC
2750795 CCACAACCCTACTGCACC
1 CCACAACCCTACTGCACC
2750813 TCTATCTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.56, G:0.06, T:0.11
Consensus pattern (18 bp):
CCACAACCCTACTGCACC
Found at i:2751849 original size:21 final size:21
Alignment explanation
Indices: 2751823--2751864 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
2751813 GTATGCCATA
*
2751823 TGGATCCTGAACGGTGGGAGG
1 TGGATCCTGAACGGTAGGAGG
2751844 TGGATCCTGAACGGTAGGAGG
1 TGGATCCTGAACGGTAGGAGG
2751865 GGCCTCTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.14, G:0.45, T:0.19
Consensus pattern (21 bp):
TGGATCCTGAACGGTAGGAGG
Found at i:2751875 original size:21 final size:21
Alignment explanation
Indices: 2751861--2751902 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
2751851 TGAACGGTAG
2751861 GAGGGGCCTCTTGAACGATGA
1 GAGGGGCCTCTTGAACGATGA
2751882 GAGGGGCCTCTTGAACGATGA
1 GAGGGGCCTCTTGAACGATGA
2751903 CAGGTGAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.19, G:0.38, T:0.19
Consensus pattern (21 bp):
GAGGGGCCTCTTGAACGATGA
Found at i:2751940 original size:21 final size:21
Alignment explanation
Indices: 2751910--2751954 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
2751900 TGACAGGTGA
2751910 ATCCTAAACAATGGGAGGAGG
1 ATCCTAAACAATGGGAGGAGG
* * *
2751931 ATCCTGAACAATGGTAGGTGG
1 ATCCTAAACAATGGGAGGAGG
2751952 ATC
1 ATC
2751955 AGGCTTCTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.20
Consensus pattern (21 bp):
ATCCTAAACAATGGGAGGAGG
Found at i:2752257 original size:21 final size:21
Alignment explanation
Indices: 2752233--2752278 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
2752223 TCTCACGCAG
*
2752233 AGCAGATACCTCATCACATAA
1 AGCAGATACCTCACCACATAA
*
2752254 AGCAGATACCTCACCACGTAA
1 AGCAGATACCTCACCACATAA
2752275 AGCA
1 AGCA
2752279 CCATTGTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.30, G:0.13, T:0.15
Consensus pattern (21 bp):
AGCAGATACCTCACCACATAA
Found at i:2752331 original size:42 final size:43
Alignment explanation
Indices: 2752238--2752334 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 43
2752228 CGCAGAGCAG
*
2752238 ATACCTCATCACATAAAGCAGATACCTCACCACGTAAAGCACC
1 ATACCTCATCACATAAAACAGATACCTCACCACGTAAAGCACC
** * *
2752281 AT-TGTCATCACGTAAAACA-ACTACCTCACCACGTTAAG-ACC
1 ATACCTCATCACATAAAACAGA-TACCTCACCACGTAAAGCACC
*
2752322 CTACCTCATCACA
1 ATACCTCATCACA
2752335 CCATGCACCA
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
41 5 0.12
42 36 0.84
43 2 0.05
ACGTcount: A:0.37, C:0.35, G:0.08, T:0.20
Consensus pattern (43 bp):
ATACCTCATCACATAAAACAGATACCTCACCACGTAAAGCACC
Found at i:2752377 original size:21 final size:21
Alignment explanation
Indices: 2752240--2752400 Score: 83
Period size: 21 Copynumber: 7.7 Consensus size: 21
2752230 CAGAGCAGAT
* *
2752240 ACCTCATCACATAAAGCA-GA
1 ACCTCATCACGTAAAGCACCA
*
2752260 TACCTCACCACGTAAAGCACCA
1 -ACCTCATCACGTAAAGCACCA
*** * * *
2752282 TTGTCATCACGTAAAACAACT
1 ACCTCATCACGTAAAGCACCA
* * *
2752303 ACCTCACCACGTTAAG-ACCCT
1 ACCTCATCACGTAAAGCA-CCA
*** *
2752324 ACCTCATCACACCATGCACCA
1 ACCTCATCACGTAAAGCACCA
*** *
2752345 TTGTCTTCACGTAAAGCACCA
1 ACCTCATCACGTAAAGCACCA
* **
2752366 ACCTCATTACGTAAAGCACTG
1 ACCTCATCACGTAAAGCACCA
2752387 ACCTCATCACGTAA
1 ACCTCATCACGTAA
2752401 CTCCCCTAAC
Statistics
Matches: 98, Mismatches: 39, Indels: 6
0.69 0.27 0.04
Matches are distributed among these distances:
20 1 0.01
21 95 0.97
22 2 0.02
ACGTcount: A:0.35, C:0.35, G:0.10, T:0.20
Consensus pattern (21 bp):
ACCTCATCACGTAAAGCACCA
Found at i:2752391 original size:63 final size:63
Alignment explanation
Indices: 2752276--2752396 Score: 154
Period size: 63 Copynumber: 1.9 Consensus size: 63
2752266 ACCACGTAAA
* * *
2752276 GCACCATTGTCATCACGTAAAACAACTACCTCACCACGTTAAGACCCTACCTCATCACACCAT
1 GCACCATTGTCATCACGTAAAACAACAACCTCACCACGTAAAGACACTACCTCATCACACCAT
* * * **
2752339 GCACCATTGTCTTCACGTAAAGCACCAACCTCATTACGTAAAG-CACTGACCTCATCAC
1 GCACCATTGTCATCACGTAAAACAACAACCTCACCACGTAAAGACACT-ACCTCATCAC
2752397 GTAACTCCCC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
62 3 0.06
63 46 0.94
ACGTcount: A:0.32, C:0.36, G:0.10, T:0.21
Consensus pattern (63 bp):
GCACCATTGTCATCACGTAAAACAACAACCTCACCACGTAAAGACACTACCTCATCACACCAT
Found at i:2752554 original size:42 final size:42
Alignment explanation
Indices: 2752484--2752607 Score: 169
Period size: 42 Copynumber: 3.0 Consensus size: 42
2752474 AGAGGTGATG
* * *
2752484 GTGGAGAAGAGGCTCGATGATGTGATGGCTCTCGGTGTCGAG
1 GTGGAGAACAGGCTCGATGAGGTGATGGCTCTCGGTGTCGAA
* *
2752526 GTGTAGAATCA-GCTCGATCAGGTGATGGCTCTCGGTGTCGAA
1 GTGGAGAA-CAGGCTCGATGAGGTGATGGCTCTCGGTGTCGAA
* *
2752568 GTGGAGAAGAGGCTCAATGAGGTGATGGCTCTCGGTGTCG
1 GTGGAGAACAGGCTCGATGAGGTGATGGCTCTCGGTGTCG
2752608 GAGTTGGGGG
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
41 1 0.01
42 69 0.97
43 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (42 bp):
GTGGAGAACAGGCTCGATGAGGTGATGGCTCTCGGTGTCGAA
Found at i:2753849 original size:18 final size:18
Alignment explanation
Indices: 2753822--2753858 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
2753812 GTATTCACCC
2753822 AAGTCATTATTCTATCAT
1 AAGTCATTATTCTATCAT
*
2753840 AAGTCTTTATTCTATCAT
1 AAGTCATTATTCTATCAT
2753858 A
1 A
2753859 GTTCCCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.46
Consensus pattern (18 bp):
AAGTCATTATTCTATCAT
Found at i:2754136 original size:20 final size:20
Alignment explanation
Indices: 2754111--2754163 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
2754101 AATCGAAACT
*
2754111 CGAAAATAAAATTCGCAATG
1 CGAAAATAAAATTCGCAACG
*
2754131 CGAAAATGAAATTCGCAACG
1 CGAAAATAAAATTCGCAACG
*
2754151 CAAAAACTAAAAT
1 CGAAAA-TAAAAT
2754164 CGCGTTGCGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 23 0.82
21 5 0.18
ACGTcount: A:0.53, C:0.17, G:0.13, T:0.17
Consensus pattern (20 bp):
CGAAAATAAAATTCGCAACG
Found at i:2754166 original size:20 final size:19
Alignment explanation
Indices: 2754099--2754166 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 19
2754089 TCGCAACATG
* *
2754099 AAAATCGAAACTCGAAAAT
1 AAAATCGCAACGCGAAAAT
*
2754118 AAAATTCGCAATGCGAAAAT
1 AAAA-TCGCAACGCGAAAAT
* *
2754138 GAAATTCGCAACGCAAAAACT
1 -AAAATCGCAACGCGAAAA-T
2754159 AAAATCGC
1 AAAATCGC
2754167 GTTGCGAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
19 4 0.10
20 31 0.79
21 4 0.10
ACGTcount: A:0.51, C:0.19, G:0.13, T:0.16
Consensus pattern (19 bp):
AAAATCGCAACGCGAAAAT
Found at i:2754198 original size:14 final size:15
Alignment explanation
Indices: 2754178--2754211 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
2754168 TTGCGAATTT
2754178 CATTTTCGAGTTGCG
1 CATTTTCGAGTTGCG
*
2754193 -ATTTTCGTGTTGCG
1 CATTTTCGAGTTGCG
2754207 CATTT
1 CATTT
2754212 AAGTTTCAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.12, C:0.18, G:0.24, T:0.47
Consensus pattern (15 bp):
CATTTTCGAGTTGCG
Found at i:2754779 original size:19 final size:19
Alignment explanation
Indices: 2754737--2754787 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
2754727 TGGAAACTGT
* * *
2754737 GTTGCGAAATTGGAGTTCGT
1 GTTGCG-AATTTGAGATCGC
2754757 GTTGCGAATTTGAGATCGC
1 GTTGCGAATTTGAGATCGC
2754776 GTTGCGAATTTG
1 GTTGCGAATTTG
2754788 TTGGTTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 22 0.79
20 6 0.21
ACGTcount: A:0.20, C:0.12, G:0.33, T:0.35
Consensus pattern (19 bp):
GTTGCGAATTTGAGATCGC
Found at i:2756196 original size:182 final size:182
Alignment explanation
Indices: 2755903--2756371 Score: 701
Period size: 182 Copynumber: 2.6 Consensus size: 182
2755893 CGATACAAAT
* * * * * *
2755903 TAAAAATGTATCGATCCATAAAAATATAACAGGTAAAAATATGATAAAACCGGTGTC-ATTATGA
1 TAAAAATGTATCGATCCATAGAAATATAACAGGTAATAATATGACAAAACAGGTCTCGA-AATGA
* * *
2755967 TAAAACCGGTAAAACGTTACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTGTCGACACT
65 TAAAACCGGTAAAAAGATACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACT
*
2756032 TTTGTAATTTAAAAGAGAAGAAGTTATAGCGCCT-AAAAGGTGTCGATACTTTA
130 TTTGTAATTTAAAAGAGAAGAAGTTATAACGCCTGAAAA-GTGTCGATACTTTA
* * * *
2756085 TAAAAATATGTCGATCCATAGCAATATAACAGATAATAATATGACAAAACAGGTCTCGAAATGAT
1 TAAAAATGTATCGATCCATAGAAATATAACAGGTAATAATATGACAAAACAGGTCTCGAAATGAT
* *
2756150 AAAACCGGTAAAAAGCTACCAGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTT
66 AAAACCGGTAAAAAGATACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTT
*
2756215 TTGTAATTTAAAAGAGAAGAAGTTATAACGTCTGAAAAGTGTCGATACTTTA
131 TTGTAATTTAAAAGAGAAGAAGTTATAACGCCTGAAAAGTGTCGATACTTTA
* * * *
2756267 -AACAAATGTATCGATCCATAGTAATATATCCGGTAATAATATGACAAAAGAGGTCTCGAAATGA
1 TAA-AAATGTATCGATCCATAGAAATATAACAGGTAATAATATGACAAAACAGGTCTCGAAATGA
2756331 TAAAACCGGTAAAAAGATACCGGATATATTGAAAGTGTCGA
65 TAAAACCGGTAAAAAGATACCGGATATATTGAAAGTGTCGA
2756372 CACAAAAATA
Statistics
Matches: 259, Mismatches: 25, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
181 2 0.01
182 252 0.97
183 5 0.02
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.27
Consensus pattern (182 bp):
TAAAAATGTATCGATCCATAGAAATATAACAGGTAATAATATGACAAAACAGGTCTCGAAATGAT
AAAACCGGTAAAAAGATACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTT
TTGTAATTTAAAAGAGAAGAAGTTATAACGCCTGAAAAGTGTCGATACTTTA
Found at i:2757029 original size:201 final size:201
Alignment explanation
Indices: 2756362--2757305 Score: 1081
Period size: 201 Copynumber: 4.7 Consensus size: 201
2756352 GGATATATTG
* * * * *
2756362 AAAGTGTCGA-CACAAAAATATCAAAACCTGTAACTATAATGTAATAGGTCACTTTACAATGTAA
1 AAAGTGTCGATCCCAAAAACATCGAAACCCGTAATTATAATGTAATAGGTCACTTTACAATGTAA
* * *
2756426 TCGGTTTAAATTTACCGGTTTTATGAGAAAATAGGTCTACAAT-ATGTGTCGACACTTTATTCAT
66 CCGGTTTAAATTTACCGGTTTTATGAGAAAATAGGTCTACAATAATGTATCGACACTTTATACAT
*
2756490 TTGTGTCGATACATGTTGTCCAGAATGTATTAT-CAAACCAAGTGCACGAACAAAGTGTCGATAC
131 TTGTGTCGATACATGTTGTCCATAATGTATT-TCCAAACCAAGTGCACGAA-AAAGTGTCGATAC
2756554 ATTTATAA
194 ATTTATAA
* * * ** *
2756562 AAAGTATCGATCCCAAAAACATCGAAATCCGTAATTATAATGTAATAGGTAAAATAACAATGTAA
1 AAAGTGTCGATCCCAAAAACATCGAAACCCGTAATTATAATGTAATAGGTCACTTTACAATGTAA
* * * * * * * *
2756627 CCGGTCTAAATATACCGG-TTTATGAGAAAAGAAGTATTC-ATAAAGTATCGACACTTTATAAAT
66 CCGGTTTAAATTTACCGGTTTTATGAGAAAATAGGTCTACAATAATGTATCGACACTTTATACAT
** * * *
2756690 TTGTACCGATACTTTGTT-TCCATAATGTGTTTTCCAAACAAAACAAGTTCAC-AAATAAGTGTC
131 TTGTGTCGATAC-ATGTTGTCCATAATGT-ATTTCCAAAC----CAAGTGCACGAAA-AAGTGTC
* *
2756753 GACACATTTATAT
189 GATACATTTATAA
* * *
2756766 CAAGTGTCGATCCCAAAAACATCGAAACCCGTAACTATAATCTAATAGGTCACTTTACAATGTAA
1 AAAGTGTCGATCCCAAAAACATCGAAACCCGTAATTATAATGTAATAGGTCACTTTACAATGTAA
* * *
2756831 CTGGTTTAAATTTACCGGTTTTATGAGAAAATAGGTCTACAAT-ATGTGTCGACACTTTATTCAT
66 CCGGTTTAAATTTACCGGTTTTATGAGAAAATAGGTCTACAATAATGTATCGACACTTTATACAT
2756895 TTGTGTCGATACATGTTGTCCATAATGTATTTCCAAACCAAGTGCACGAACAAAGTGTCGATACA
131 TTGTGTCGATACATGTTGTCCATAATGTATTTCCAAACCAAGTGCACGAA-AAAGTGTCGATACA
2756960 TTTATAA
195 TTTATAA
* * * * * * * *
2756967 AAAGTGTCGATCCTACAAACATCGAAACACATAATTATAATGTAATCGGTAACATAACAATGTAA
1 AAAGTGTCGATCCCAAAAACATCGAAACCCGTAATTATAATGTAATAGGTCACTTTACAATGTAA
* * * * * *
2757032 CCGGTCTAAATATACTGGTTATT-T-A-AAAAAAGGTATAC-ATAATGTATCGATACTTTATACA
66 CCGGTTTAAATTTACCGGTT-TTATGAGAAAATAGGTCTACAATAATGTATCGACACTTTATACA
* * ** * *
2757093 TTTGTGTCGACAC-TTTATGTCCATAATAAATTTTCCAAA-CAAGTTCACGAAAAAGTGTTGATA
130 TTTGTGTCGATACATGT-TGTCCATAATGTA-TTTCCAAACCAAGTGCACGAAAAAGTGTCGATA
*
2757156 CATTTAGAA
193 CATTTATAA
*
2757165 AAAGTGTCGATCCTAAAAACATCGAAACCCGTAATTATAATGTAATAGGTCACTTTACAATGTAA
1 AAAGTGTCGATCCCAAAAACATCGAAACCCGTAATTATAATGTAATAGGTCACTTTACAATGTAA
* * * * * *
2757230 CCGGTTTAAATTTACCGGTTTTATAAGAAAATAGGTCTAC-AGAATATATCGATACTTTTTAAAT
66 CCGGTTTAAATTTACCGGTTTTATGAGAAAATAGGTCTACAATAATGTATCGACACTTTATACAT
*
2757294 TAGTGTCGATAC
131 TTGTGTCGATAC
2757306 TTTTGAAAAT
Statistics
Matches: 620, Mismatches: 102, Indels: 44
0.81 0.13 0.06
Matches are distributed among these distances:
197 2 0.00
198 99 0.16
199 65 0.10
200 121 0.20
201 161 0.26
202 3 0.00
203 1 0.00
204 104 0.17
205 62 0.10
206 2 0.00
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.32
Consensus pattern (201 bp):
AAAGTGTCGATCCCAAAAACATCGAAACCCGTAATTATAATGTAATAGGTCACTTTACAATGTAA
CCGGTTTAAATTTACCGGTTTTATGAGAAAATAGGTCTACAATAATGTATCGACACTTTATACAT
TTGTGTCGATACATGTTGTCCATAATGTATTTCCAAACCAAGTGCACGAAAAAGTGTCGATACAT
TTATAA
Found at i:2757091 original size:22 final size:21
Alignment explanation
Indices: 2757065--2757110 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
2757055 TAAAAAAAGG
*
2757065 TATACATAATGTATCGATACTT
1 TATACAT-ATGTATCGACACTT
* *
2757087 TATACATTTGTGTCGACACTT
1 TATACATATGTATCGACACTT
2757108 TAT
1 TAT
2757111 GTCCATAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.43
Consensus pattern (21 bp):
TATACATATGTATCGACACTT
Found at i:2760941 original size:198 final size:198
Alignment explanation
Indices: 2760473--2760945 Score: 569
Period size: 197 Copynumber: 2.4 Consensus size: 198
2760463 GATTTTGTGT
* * * *
2760473 CGATAAATATAATGTAATAGGTAAATTTCCAATGTAACC-AGTAGAAATATACCGGGTTCATGAG
1 CGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGATTA-AAATATACC-GGTTAATGAG
* * * *
2760537 AGAATAGGTCAACATAAAGTATCGACACTTTGTTTAATTTGTGTCGATACATTTTTTCAAAATGA
64 AAAATAGGTCAACATAAAGTATCGACACTCTGTTAAATATGTGTCGATACATTTTTTCAAAATGA
* * * *
2760602 ATGGCAAACGAGGTGTACGCATAAAGTGTCGATACATTTTTAAAAAGTATCGATCCTCAAAATAT
129 AAGACAAACGAGGTGCACGCATAAAGTGTCGATACA-TTTTAAAAAGTATCGATCCTCAAAACAT
*
2760667 CGAAAT
193 CGAAAC
* * * * *
2760673 CGATAATTATTATGTAACAGGTAAATTTACAATGTAACCGGTTAAAATATACCGGTTAATTAGCA
1 CGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGATTAAAATATACCGGTTAATGAGAA
* * *
2760738 AATAGGTCTACATTATGTATCGACACTCT-TTAAATATGTGTCGATAC-TTTTTTCCAAAAT-AA
66 AATAGGTCAACATAAAGTATCGACACTCTGTTAAATATGTGTCGATACATTTTTT-CAAAATGAA
* * *
2760800 AGCACAAACGAGTTGCACGCATAAAGTGTCGATACA-TTTAAAATTGTATCGATCCTGAAAACAT
130 AG-ACAAACGAGGTGCACGCATAAAGTGTCGATACATTTTAAAA-AGTATCGATCCTCAAAACAT
2760864 CGAAAC
193 CGAAAC
* * * * * * *
2760870 CGATATTTATAATGTAATAGGTTAATTTATAATGTAACCGATTTAAATTTACCGTCTTTATGAGA
1 CGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGATTAAAATATACCG-GTTAATGAGA
2760935 AAATAGGTCAA
65 AAATAGGTCAA
2760946 TTTAAGCGCT
Statistics
Matches: 231, Mismatches: 37, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
196 7 0.03
197 77 0.33
198 68 0.29
199 33 0.14
200 44 0.19
201 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (198 bp):
CGATAATTATAATGTAATAGGTAAATTTACAATGTAACCGATTAAAATATACCGGTTAATGAGAA
AATAGGTCAACATAAAGTATCGACACTCTGTTAAATATGTGTCGATACATTTTTTCAAAATGAAA
GACAAACGAGGTGCACGCATAAAGTGTCGATACATTTTAAAAAGTATCGATCCTCAAAACATCGA
AAC
Found at i:2761050 original size:87 final size:87
Alignment explanation
Indices: 2760948--2761107 Score: 275
Period size: 87 Copynumber: 1.8 Consensus size: 87
2760938 TAGGTCAATT
* *
2760948 TAAGCGCTACCTATTACATTATATAAGCGCTACCTAATTTGTTATTGTACTTGATAATATTTCCG
1 TAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTAATAATATTTCCG
2761013 ATTAAATGCCTATTTTATTATA
66 ATTAAATGCCTATTTTATTATA
* *
2761035 TAAGCGCTACCTATTACATTATCTAAGCGCTACCTAATATGTTATTGTGCTTAATAATATTTCCG
1 TAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTAATAATATTTCCG
*
2761100 GTTAAATG
66 ATTAAATG
2761108 ATATAACATA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 68 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.41
Consensus pattern (87 bp):
TAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTAATAATATTTCCG
ATTAAATGCCTATTTTATTATA
Found at i:2761079 original size:23 final size:23
Alignment explanation
Indices: 2761029--2761073 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
2761019 TGCCTATTTT
*
2761029 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAGCGCTACCTAATAC
*
2761052 ATTATCTAAGCGCTACCTAATA
1 ATTATATAAGCGCTACCTAATA
2761074 TGTTATTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.33
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:2762390 original size:15 final size:16
Alignment explanation
Indices: 2762351--2762392 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
2762341 TAATCTTTTG
2762351 TTATTTTATATAAATTT
1 TTATTTTATAT-AATTT
* *
2762368 TGAATTTATAT-ATTT
1 TTATTTTATATAATTT
2762383 TTATTTTATA
1 TTATTTTATA
2762393 AATATAATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
15 12 0.57
17 9 0.43
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (16 bp):
TTATTTTATATAATTT
Found at i:2771576 original size:70 final size:70
Alignment explanation
Indices: 2771463--2771601 Score: 278
Period size: 70 Copynumber: 2.0 Consensus size: 70
2771453 GCGAACTATG
2771463 TTGCACTTATACGGATACGAAGATAGATATAAGGACGTAAAATGATAATTTCTAAAACTATAAAG
1 TTGCACTTATACGGATACGAAGATAGATATAAGGACGTAAAATGATAATTTCTAAAACTATAAAG
2771528 TATCA
66 TATCA
2771533 TTGCACTTATACGGATACGAAGATAGATATAAGGACGTAAAATGATAATTTCTAAAACTATAAAG
1 TTGCACTTATACGGATACGAAGATAGATATAAGGACGTAAAATGATAATTTCTAAAACTATAAAG
2771598 TATC
66 TATC
2771602 GGAACAATAA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.29
Consensus pattern (70 bp):
TTGCACTTATACGGATACGAAGATAGATATAAGGACGTAAAATGATAATTTCTAAAACTATAAAG
TATCA
Found at i:2771899 original size:3 final size:3
Alignment explanation
Indices: 2771893--2771918 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
2771883 TAATATTATT
2771893 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
2771919 TATTATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:2773653 original size:115 final size:114
Alignment explanation
Indices: 2773530--2773751 Score: 277
Period size: 116 Copynumber: 1.9 Consensus size: 114
2773520 GTTTTAATAT
* * * * *
2773530 TTATTTATTTTTCAATAT-TAAGAAATG-GCAGTCTTAAAACAACTGGATGTCCATTTTCTGATA
1 TTATTTATTTTTCAACATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGT-CATTTTCTGATA
*
2773593 TTTTTAAATAAATAAATATCCTATTTTATAAATTATATATTAATTGTTTTAA
65 TTTTTAAATAAATAAATATCCTA-TTTATAAA-TATATATAAATTGTTTTAA
* ** ** *
2773645 TTATTTATTTTTTAACATCGAAGAAAAGAGTTGTCTTAAGGCACCTAGAAGTCATTTTCTGATAT
1 TTATTTATTTTTCAACATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGTCATTTTCTGATAT
**
2773710 TTTTAAATAAATAAATATTTTATTTATAAATATATATAAATT
66 TTTTAAATAAATAAATATCCTATTTATAAATATATATAAATT
2773752 AATATTTTTT
Statistics
Matches: 91, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
114 11 0.12
115 24 0.26
116 40 0.44
117 16 0.18
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.45
Consensus pattern (114 bp):
TTATTTATTTTTCAACATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGTCATTTTCTGATAT
TTTTAAATAAATAAATATCCTATTTATAAATATATATAAATTGTTTTAA
Found at i:2773749 original size:29 final size:29
Alignment explanation
Indices: 2773716--2773772 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
2773706 ATATTTTTAA
2773716 ATAAATAAATATTTTATTT-ATAAATATAT
1 ATAAATAAATATTTT-TTTCATAAATATAT
* *
2773745 ATAAATTAATATTTTTTTCATAATTATA
1 ATAAATAAATATTTTTTTCATAAATATA
2773773 ATTTTGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 3 0.12
29 22 0.88
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (29 bp):
ATAAATAAATATTTTTTTCATAAATATAT
Found at i:2779591 original size:8 final size:8
Alignment explanation
Indices: 2779578--2779611 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
2779568 AAGAAGAAGG
2779578 AAAAAGAA
1 AAAAAGAA
2779586 AAAAAGAA
1 AAAAAGAA
*
2779594 AGAAAACAA
1 A-AAAAGAA
2779603 AAAAAGAA
1 AAAAAGAA
2779611 A
1 A
2779612 TGAAAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.85, C:0.03, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:2779598 original size:18 final size:18
Alignment explanation
Indices: 2779571--2779618 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
2779561 GCAAAGAAAG
* *
2779571 AAGAAGGAAAAAGAAAAA
1 AAGAAAGAAAAACAAAAA
2779589 AAGAAAG-AAAACAAAAA
1 AAGAAAGAAAAACAAAAA
2779606 AAGAAATGAAAAA
1 AAGAAA-GAAAAA
2779619 ATAAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 15 0.58
18 7 0.27
19 4 0.15
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (18 bp):
AAGAAAGAAAAACAAAAA
Found at i:2779599 original size:17 final size:16
Alignment explanation
Indices: 2779579--2779629 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 16
2779569 AGAAGAAGGA
2779579 AAAAGAAAAAAAGAAAG
1 AAAA-AAAAAAAGAAAG
2779596 AAAACAAAAAAAGAAATG
1 AAAA-AAAAAAAGAAA-G
2779614 AAAAAATAAAAA-AAAG
1 AAAAAA-AAAAAGAAAG
2779630 GAGAAATTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
16 1 0.03
17 20 0.65
18 10 0.32
ACGTcount: A:0.82, C:0.02, G:0.12, T:0.04
Consensus pattern (16 bp):
AAAAAAAAAAAGAAAG
Found at i:2783455 original size:22 final size:22
Alignment explanation
Indices: 2783429--2783505 Score: 136
Period size: 22 Copynumber: 3.5 Consensus size: 22
2783419 ATCTACACTC
2783429 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
2783451 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
* *
2783473 TTTAAAGATGATAGATTCCCTT
1 TTCAAAGATGATAGATTCTCTT
2783495 TTCAAAGATGA
1 TTCAAAGATGA
2783506 AAGCTTTATT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:2784308 original size:76 final size:76
Alignment explanation
Indices: 2784178--2785114 Score: 1723
Period size: 76 Copynumber: 12.3 Consensus size: 76
2784168 CTATTTCCCA
2784178 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2784243 AGCCTTAGGGT
66 AGCCTTAGGGT
*
2784254 CATTTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
2784319 AGCCTTAAGGT
66 AGCCTTAGGGT
*
2784330 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAATCCTTCGGGAGCTTTTTGATGTTTTC-A
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2784394 AGCCTTAGGGT
66 AGCCTTAGGGT
* * *
2784405 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCATTTTGATATTTTTAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2784470 AGCCTTAGGGT
66 AGCCTTAGGGT
2784481 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2784546 AGCCTTAGGGT
66 AGCCTTAGGGT
* *
2784557 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAACCTTCGGGAGATTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2784622 AGCCTTAGGGT
66 AGCCTTAGGGT
* *
2784633 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGATGTTTTTAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2784698 AGCCTTAGGGT
66 AGCCTTAGGGT
2784709 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2784774 AGCCTTAGGGT
66 AGCCTTAGGGT
*
2784785 CATCTATAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
2784850 AGCCTTAAGGT
66 AGCCTTAGGGT
2784861 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2784926 AGCCTTAGGGT
66 AGCCTTAGGGT
*
2784937 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGTTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2785002 AGCCTTAGGGT
66 AGCCTTAGGGT
*
2785013 CATCTGTAAGTCTTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2785078 AGCCTTAGGGT
66 AGCCTTAGGGT
* *
2785089 CATCTGTAAGCCCTTCAGTGCATGAT
1 CATCTGTAAGTCCTACAGTGCATGAT
2785115 TATTTTAAGA
Statistics
Matches: 830, Mismatches: 30, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
75 70 0.08
76 760 0.92
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:2785286 original size:3 final size:3
Alignment explanation
Indices: 2785280--2785305 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
2785270 TAATATTATT
2785280 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
2785306 TATTATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:2785310 original size:3 final size:3
Alignment explanation
Indices: 2785304--2785328 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
2785294 AATAATAATA
2785304 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
2785329 AATATATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:2787067 original size:116 final size:113
Alignment explanation
Indices: 2786940--2787161 Score: 270
Period size: 116 Copynumber: 1.9 Consensus size: 113
2786930 GTTTTAATAT
* * * *
2786940 TTATTTATTTTTCAATAT-TAAGAAAGGA-C-AGTCTTAAAACAACTGGATGTTCATTTTCTGAT
1 TTATTTATTTTT-AATATCGAAGAAAAGAGCTA-TCTTAAAACAACTAGAAG-TCATTTTCTGAT
* *
2787002 ATTTTTAAATAAATAAATATCCTATTTTATAAATTATATATTAATTGTTTTAA
63 ATTTCTAAATAAATAAATATCCTA-TTTATAAA-TATATATAAATTGTTTTAA
** *
2787055 TTATTTATTTTTTAATATCGAAGAAAAGAGCTATCTTAAGGCACCTAGAAGTCATTTTCTGATAT
1 TTATTTA-TTTTTAATATCGAAGAAAAGAGCTATCTTAAAACAACTAGAAGTCATTTTCTGATAT
**
2787120 TTCTAAATAAATAAATATTTTATTTATAAATATATATAAATT
65 TTCTAAATAAATAAATATCCTATTTATAAATATATATAAATT
2787162 AATATTTTTT
Statistics
Matches: 92, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
114 11 0.12
115 20 0.22
116 46 0.50
117 14 0.15
118 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (113 bp):
TTATTTATTTTTAATATCGAAGAAAAGAGCTATCTTAAAACAACTAGAAGTCATTTTCTGATATT
TCTAAATAAATAAATATCCTATTTATAAATATATATAAATTGTTTTAA
Found at i:2787159 original size:29 final size:29
Alignment explanation
Indices: 2787126--2787182 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
2787116 ATATTTCTAA
2787126 ATAAATAAATATTTTATTT-ATAAATATAT
1 ATAAATAAATATTTT-TTTCATAAATATAT
* *
2787155 ATAAATTAATATTTTTTTCATAATTATA
1 ATAAATAAATATTTTTTTCATAAATATA
2787183 ATTTTGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 3 0.12
29 22 0.88
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (29 bp):
ATAAATAAATATTTTTTTCATAAATATAT
Found at i:2788487 original size:60 final size:60
Alignment explanation
Indices: 2788394--2788565 Score: 215
Period size: 60 Copynumber: 2.9 Consensus size: 60
2788384 CTAAACAATA
* *
2788394 ACTCTCATT-TCAAATTGGTCCTTAAACTTTTGAATATTCTAATTTCAT-TCTCAAACTATG
1 ACTCTCATTCT-AAATTAGTCCTTAAACTTTTGAATATTCTAATTTCATCCCTC-AACTATG
* *
2788454 ACTCTCATTCTAAATTAGTCCTTAAACTTTTGAACATTCCAATTTCATCCCTCAACTATG
1 ACTCTCATTCTAAATTAGTCCTTAAACTTTTGAATATTCTAATTTCATCCCTCAACTATG
* * **
2788514 ACCCTCTTTCTAAATTAGTCCCAAAAACTTTTGAATATT-TCAATTTCATCCC
1 ACTCTCATTCTAAATTAGT-CCTTAAACTTTTGAATATTCT-AATTTCATCCC
2788566 CAAATTCTTC
Statistics
Matches: 98, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
60 67 0.68
61 31 0.32
ACGTcount: A:0.30, C:0.24, G:0.05, T:0.40
Consensus pattern (60 bp):
ACTCTCATTCTAAATTAGTCCTTAAACTTTTGAATATTCTAATTTCATCCCTCAACTATG
Found at i:2791751 original size:2 final size:2
Alignment explanation
Indices: 2791744--2791809 Score: 132
Period size: 2 Copynumber: 33.0 Consensus size: 2
2791734 TTATCAAATA
2791744 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2791786 AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
2791810 GCGTGCGCGT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2793587 original size:13 final size:13
Alignment explanation
Indices: 2793569--2793605 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
2793559 CCAAGGCAAG
2793569 TCATTTCACTTGT
1 TCATTTCACTTGT
2793582 TCATTTCACTTGT
1 TCATTTCACTTGT
2793595 TCATTTCACTT
1 TCATTTCACTT
2793606 AGGGAAGCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.16, C:0.24, G:0.05, T:0.54
Consensus pattern (13 bp):
TCATTTCACTTGT
Found at i:2795142 original size:12 final size:12
Alignment explanation
Indices: 2795125--2795149 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2795115 AGCACTGAAT
2795125 TTCTTCTTTTTC
1 TTCTTCTTTTTC
2795137 TTCTTCTTTTTC
1 TTCTTCTTTTTC
2795149 T
1 T
2795150 CTCTCTCATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTCTTCTTTTTC
Found at i:2797266 original size:15 final size:16
Alignment explanation
Indices: 2797228--2797269 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
2797218 AAAGGTGAAT
*
2797228 AAAATAAATAAAGTAA
1 AAAATAAAGAAAGTAA
*
2797244 AATA-AAAGAAA-TAA
1 AAAATAAAGAAAGTAA
2797258 AAAATAAAGAAA
1 AAAATAAAGAAA
2797270 ATATAGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
14 6 0.27
15 13 0.59
16 3 0.14
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (16 bp):
AAAATAAAGAAAGTAA
Found at i:2797575 original size:31 final size:32
Alignment explanation
Indices: 2797537--2797596 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
2797527 ATATAGTTAA
2797537 ATATATATATCA-AATAAAACAAAA-ATAATGT
1 ATATATATAT-ATAATAAAACAAAATATAATGT
*
2797568 ATATATATATATAATTAAACAAAATATAA
1 ATATATATATATAATAAAACAAAATATAA
2797597 AATAATAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 1 0.04
31 21 0.81
32 4 0.15
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.32
Consensus pattern (32 bp):
ATATATATATATAATAAAACAAAATATAATGT
Found at i:2799576 original size:36 final size:35
Alignment explanation
Indices: 2799525--2799842 Score: 199
Period size: 36 Copynumber: 9.3 Consensus size: 35
2799515 CAATTCAGAG
*
2799525 ATTTGTTTCAAGAGAAACTGTCTTAAGAGAGACAAA
1 ATTTGTTTTAAGAGAAACTGTC-TAAGAGAGACAAA
* *
2799561 ATTTGTTTTACGAGAAAATGTCTCAAGAGAGACAAA
1 ATTTGTTTTAAGAGAAACTGTCT-AAGAGAGACAAA
* *
2799597 ATTTAGTTCTAAAAGAAACTGTC-AAGAGAGAC--A
1 ATTT-GTTTTAAGAGAAACTGTCTAAGAGAGACAAA
* * **
2799630 ATTTGTTTAAAG-GAAA---AC--A-A-ATTCAAA
1 ATTTGTTTTAAGAGAAACTGTCTAAGAGAGACAAA
*
2799657 GATTT-TATTTCAAGGGAAACTGTCTCAAGAGAGACAAA
1 -ATTTGT-TTT-AAGAGAAACTGTCT-AAGAGAGACAAA
* * **
2799695 ACTTTGTTTCAAG-GAAA---AC--A-A-ATTCAAA
1 A-TTTGTTTTAAGAGAAACTGTCTAAGAGAGACAAA
* * * *
2799723 GTTTTTGTTTCAAGGGAAACCGTCTCAAGAGAGACAAA
1 --ATTTGTTTTAAGAGAAACTGTCT-AAGAGAGACAAA
*
2799761 ATTTGTTTTAAGAGAAAATGTCTCAAGAGAGACAAA
1 ATTTGTTTTAAGAGAAACTGTCT-AAGAGAGACAAA
2799797 ATTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAA
1 ATTTGTTTTAAGAGAAACTGTCT-AAGAGAGACAAA
2799833 ACTTTGTTTT
1 A-TTTGTTTT
2799843 GAGTAAATTA
Statistics
Matches: 221, Mismatches: 31, Indels: 59
0.71 0.10 0.19
Matches are distributed among these distances:
25 2 0.01
26 1 0.00
27 3 0.01
28 12 0.05
29 15 0.07
30 9 0.04
31 4 0.02
32 5 0.02
33 8 0.04
35 10 0.05
36 108 0.49
37 28 0.13
38 15 0.07
39 1 0.00
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.29
Consensus pattern (35 bp):
ATTTGTTTTAAGAGAAACTGTCTAAGAGAGACAAA
Found at i:2799690 original size:136 final size:134
Alignment explanation
Indices: 2799438--2799703 Score: 369
Period size: 136 Copynumber: 2.0 Consensus size: 134
2799428 TGTTTCAAGG
*
2799438 GAAACTGTCTCAAGAGAGACAAAATTTAGTTCCAAAAGAAATAGTCTCAAGGGAGACACAATTTG
1 GAAAATGTCTCAAGAGAGACAAAATTTAGTTCCAAAAGAAATAG-CTCAA-GGAGACACAATTTG
* * * *
2799503 TTTCAAGGAATACAATTCAGAGATTTGTTTCAAGAGAAACTGTCTTAAGAGAGACAAAA-TTTGT
64 TTTAAAGGAAAACAATTCAAAGATTTATTTCAAGAGAAACTGTC-TAAGAGAGACAAAACTTTGT
2799567 TTTACGA
128 TTTACGA
* *
2799574 GAAAATGTCTCAAGAGAGACAAAATTTAGTTCTAAAAGAAACT-G-TCAA-GAGAGACAATTTGT
1 GAAAATGTCTCAAGAGAGACAAAATTTAGTTCCAAAAGAAA-TAGCTCAAGGAGACACAATTTGT
*
2799636 TTAAAGGAAAACAAATTCAAAGATTTTATTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTTG
65 TTAAAGGAAAAC-AATTCAAAGA-TTTATTTCAAGAGAAACTGTCT-AAGAGAGACAAAACTTTG
2799701 TTT
127 TTT
2799704 CAAGGAAAAC
Statistics
Matches: 117, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
132 23 0.20
133 10 0.09
134 36 0.31
135 7 0.06
136 40 0.34
137 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.27
Consensus pattern (134 bp):
GAAAATGTCTCAAGAGAGACAAAATTTAGTTCCAAAAGAAATAGCTCAAGGAGACACAATTTGTT
TAAAGGAAAACAATTCAAAGATTTATTTCAAGAGAAACTGTCTAAGAGAGACAAAACTTTGTTTT
ACGA
Found at i:2799711 original size:66 final size:65
Alignment explanation
Indices: 2799481--2799778 Score: 252
Period size: 66 Copynumber: 4.5 Consensus size: 65
2799471 AAAAGAAATA
* * * * * * *
2799481 GTCTCAAGGGAGACACAATTTGTTTCAAGGAATAC-AATTCAGAGA-TTTGTTTCAAGAGAAACT
1 GTCTCAAGAGAGACAAAATTTGTTTAAAGGAAAACAAATTCAAAGATTTTATTTCAAGGGAAACT
* * * ** *
2799544 GTCTTAAGAGAGACAAAATTTGTTTTACGAGAAAATGTCTCAAGAGAGACAAA-A-TTTAGTTCT
1 GTCTCAAGAGAGACAAAATTTGTTTAAAG-GAAAA-----C-A-A-ATTCAAAGATTTTATTTC-
**
2799607 AAAAGAAACT
56 AAGGGAAACT
2799617 G--TCAAGAGAGAC--AATTTGTTTAAAGGAAAACAAATTCAAAGATTTTATTTCAAGGGAAACT
1 GTCTCAAGAGAGACAAAATTTGTTTAAAGGAAAACAAATTCAAAGATTTTATTTCAAGGGAAACT
* * *
2799678 GTCTCAAGAGAGACAAAACTTTGTTTCAAGGAAAACAAATTCAAAGTTTTTGTTTCAAGGGAAAC
1 GTCTCAAGAGAGACAAAA-TTTGTTTAAAGGAAAACAAATTCAAAGATTTTATTTCAAGGGAAAC
*
2799743 C
65 T
*
2799744 GTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAA
1 GTCTCAAGAGAGACAAAATTTGTTTAAAG-GAAAA
2799779 TGTCTCAAGA
Statistics
Matches: 191, Mismatches: 25, Indels: 35
0.76 0.10 0.14
Matches are distributed among these distances:
60 5 0.03
61 11 0.06
62 8 0.04
63 36 0.19
64 4 0.02
65 12 0.06
66 66 0.35
68 5 0.03
69 12 0.06
71 10 0.05
72 8 0.04
73 14 0.07
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.28
Consensus pattern (65 bp):
GTCTCAAGAGAGACAAAATTTGTTTAAAGGAAAACAAATTCAAAGATTTTATTTCAAGGGAAACT
Found at i:2799810 original size:19 final size:19
Alignment explanation
Indices: 2799752--2799811 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
2799742 CCGTCTCAAG
2799752 AGAGACAAAATTTGTTTTA
1 AGAGACAAAATTTGTTTTA
**
2799771 AGAG--AAAA--TGTCTCAA
1 AGAGACAAAATTTGT-TTTA
2799787 GAGAGACAAAATTTGTTTTA
1 -AGAGACAAAATTTGTTTTA
2799807 AGAGA
1 AGAGA
2799812 AACTGTCTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 12
0.66 0.09 0.26
Matches are distributed among these distances:
15 3 0.10
16 2 0.06
17 8 0.26
19 13 0.42
20 2 0.06
21 3 0.10
ACGTcount: A:0.45, C:0.07, G:0.20, T:0.28
Consensus pattern (19 bp):
AGAGACAAAATTTGTTTTA
Found at i:2801225 original size:83 final size:89
Alignment explanation
Indices: 2801138--2801343 Score: 246
Period size: 95 Copynumber: 2.3 Consensus size: 89
2801128 GAGCCAATGT
* * *
2801138 GTTTAACCAATTTCTCTAGAAGGACAACTC-A-A-TAT-GTA-AAT-ACCTTTATCAGATTAGCT
1 GTTTAACCAATTGCTCTAGAGGGACAACTCAATATTATAGTATAATCACCTTTATCAGACTAGCT
2801197 GAATATTATCCATAAAGCCGGGGC
66 GAATATTATCCATAAAGCCGGGGC
*
2801221 GTTTAACCAATTGC-CTTAGAGGGACAGCTCAAGCTTTATTGTATAGTATAATCACCTTTATCAG
1 GTTTAACCAATTGCTC-TAGAGGGACAACTCAA----TA-T-TATAGTATAATCACCTTTATCAG
*
2801285 GCTAGCTGAATATTATCCATAAAGCCGGGGC
59 ACTAGCTGAATATTATCCATAAAGCCGGGGC
*
2801316 GATTAACCAATTGCTCTAGAGGGACAAC
1 GTTTAACCAATTGCTCTAGAGGGACAAC
2801344 CCAAGCTTTA
Statistics
Matches: 102, Mismatches: 7, Indels: 16
0.82 0.06 0.13
Matches are distributed among these distances:
82 1 0.01
83 25 0.25
84 1 0.01
89 1 0.01
92 3 0.03
93 3 0.03
94 3 0.03
95 64 0.63
96 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (89 bp):
GTTTAACCAATTGCTCTAGAGGGACAACTCAATATTATAGTATAATCACCTTTATCAGACTAGCT
GAATATTATCCATAAAGCCGGGGC
Found at i:2801349 original size:95 final size:95
Alignment explanation
Indices: 2801179--2801360 Score: 303
Period size: 95 Copynumber: 1.9 Consensus size: 95
2801169 ATATGTAAAT
* *
2801179 ACCTTTATCAGATTAGCTGAATATTATCCATAAAGCCGGGGCGTTTAACCAATTGCCTTAGAGGG
1 ACCTTTATCAGACTAGCTGAATATTATCCATAAAGCCGGGGCGATTAACCAATTGCCTTAGAGGG
* *
2801244 ACAGCTCAAGCTTTATTGTATAGTATAATC
66 ACAACCCAAGCTTTATTGTATAGTATAATC
*
2801274 ACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGGGCGATTAACCAATTG-CTCTAGAGG
1 ACCTTTATCAGACTAGCTGAATATTATCCATAAAGCCGGGGCGATTAACCAATTGCCT-TAGAGG
2801338 GACAACCCAAGCTTTATTGTATA
65 GACAACCCAAGCTTTATTGTATA
2801361 TAAATAATAT
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
94 2 0.02
95 79 0.98
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (95 bp):
ACCTTTATCAGACTAGCTGAATATTATCCATAAAGCCGGGGCGATTAACCAATTGCCTTAGAGGG
ACAACCCAAGCTTTATTGTATAGTATAATC
Found at i:2805361 original size:18 final size:19
Alignment explanation
Indices: 2805313--2805353 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
2805303 AAGAAAGGTG
*
2805313 AATAAAATAAATAAAGTAA
1 AATAAAAGAAATAAAGTAA
2805332 AATAAAAGAAATAAAG-AA
1 AATAAAAGAAATAAAGTAA
2805350 AATA
1 AATA
2805354 TAGAAAATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (19 bp):
AATAAAAGAAATAAAGTAA
Found at i:2805526 original size:24 final size:22
Alignment explanation
Indices: 2805472--2805526 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 22
2805462 AGATGGAAAG
*
2805472 AATAAAATAAAATAAAAAATGA
1 AATAAAACAAAATAAAAAATGA
*
2805494 AGATGAAAACAAAATAAAACATGTGA
1 A-AT-AAAACAAAATAAAA-A-ATGA
2805520 AATAAAA
1 AATAAAA
2805527 TAATAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
22 1 0.04
23 2 0.07
24 17 0.63
25 3 0.11
26 4 0.15
ACGTcount: A:0.71, C:0.04, G:0.09, T:0.16
Consensus pattern (22 bp):
AATAAAACAAAATAAAAAATGA
Found at i:2805631 original size:33 final size:35
Alignment explanation
Indices: 2805594--2805684 Score: 89
Period size: 35 Copynumber: 2.6 Consensus size: 35
2805584 AACACAAAAG
* *
2805594 ATATAGAA-AATAGAAAAAT-ATAGT-TAAATATAT
1 ATATAGAATAAAACAAAAATAAT-GTATAAATATAT
* *
2805627 ATATATAATAAAACAAAAATAATGTATATATATAT
1 ATATAGAATAAAACAAAAATAATGTATAAATATAT
* *
2805662 ATATATAATTAAACAAAATATAA
1 ATATAGAATAAAACAAAA-ATAA
2805685 AATAAATATA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
33 7 0.14
34 11 0.22
35 27 0.55
36 4 0.08
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (35 bp):
ATATAGAATAAAACAAAAATAATGTATAAATATAT
Found at i:2805782 original size:19 final size:19
Alignment explanation
Indices: 2805758--2805823 Score: 114
Period size: 19 Copynumber: 3.5 Consensus size: 19
2805748 AAAGAAAATT
2805758 GGGTTTAAAATTAGATTTG
1 GGGTTTAAAATTAGATTTG
*
2805777 GGGTTTAAAATTAGATTTA
1 GGGTTTAAAATTAGATTTG
*
2805796 GGGTTTAAAATCAGATTTG
1 GGGTTTAAAATTAGATTTG
2805815 GGGTTTAAA
1 GGGTTTAAA
2805824 TTGAGCCTTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 44 1.00
ACGTcount: A:0.33, C:0.02, G:0.26, T:0.39
Consensus pattern (19 bp):
GGGTTTAAAATTAGATTTG
Found at i:2808980 original size:31 final size:31
Alignment explanation
Indices: 2808945--2809020 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
2808935 TAATATGTCA
*
2808945 AATATGATATCTATAATCCAATAAAATATTT
1 AATATGATATCTATAATCCAATAAAATAGTT
* **
2808976 AATATGATA-CATATACTTTAATAAAATAGTT
1 AATATGATATC-TATAATCCAATAAAATAGTT
*
2809007 AATGTGATATCTAT
1 AATATGATATCTAT
2809021 TTTTTTAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
30 1 0.03
31 36 0.95
32 1 0.03
ACGTcount: A:0.46, C:0.08, G:0.07, T:0.39
Consensus pattern (31 bp):
AATATGATATCTATAATCCAATAAAATAGTT
Found at i:2812594 original size:31 final size:31
Alignment explanation
Indices: 2812559--2812619 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
2812549 GTGGATATTT
2812559 GTTAGACAAATCAACCAAGAAGACCAAATTC
1 GTTAGACAAATCAACCAAGAAGACCAAATTC
*
2812590 GTTAGACAAATCAACCAAGAATACCAAATT
1 GTTAGACAAATCAACCAAGAAGACCAAATT
2812620 GAACTGAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.49, C:0.21, G:0.11, T:0.18
Consensus pattern (31 bp):
GTTAGACAAATCAACCAAGAAGACCAAATTC
Found at i:2813352 original size:24 final size:24
Alignment explanation
Indices: 2813286--2813392 Score: 101
Period size: 24 Copynumber: 4.5 Consensus size: 24
2813276 ATATTTTATC
*
2813286 TGATTTCCGA-CTAGAATTCTGTTA
1 TGATTTCTGATCT-GAATTCTGTTA
* * *
2813310 TGA-TACATTACCTGAATTCTGTTA
1 TGATTTC-TGATCTGAATTCTGTTA
* *
2813334 TGATTTCTGATCTGGATTCTGTTC
1 TGATTTCTGATCTGAATTCTGTTA
* * *
2813358 TAATATCTGATCTGAATTCTGTTT
1 TGATTTCTGATCTGAATTCTGTTA
2813382 TGATTTCTGAT
1 TGATTTCTGAT
2813393 AACTCCGTTT
Statistics
Matches: 66, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
23 2 0.03
24 60 0.91
25 4 0.06
ACGTcount: A:0.22, C:0.15, G:0.16, T:0.47
Consensus pattern (24 bp):
TGATTTCTGATCTGAATTCTGTTA
Found at i:2813353 original size:12 final size:12
Alignment explanation
Indices: 2813321--2813392 Score: 56
Period size: 12 Copynumber: 6.0 Consensus size: 12
2813311 GATACATTAC
*
2813321 CTGAATTCTGTT
1 CTGAATTCTGAT
* *
2813333 ATGATTTCTGAT
1 CTGAATTCTGAT
* *
2813345 CTGGATTCTGTT
1 CTGAATTCTGAT
2813357 CT-AATATCTGAT
1 CTGAAT-TCTGAT
*
2813369 CTGAATTCTGTT
1 CTGAATTCTGAT
* *
2813381 TTGATTTCTGAT
1 CTGAATTCTGAT
2813393 AACTCCGTTT
Statistics
Matches: 45, Mismatches: 13, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
11 2 0.04
12 40 0.89
13 3 0.07
ACGTcount: A:0.19, C:0.14, G:0.17, T:0.50
Consensus pattern (12 bp):
CTGAATTCTGAT
Found at i:2821091 original size:24 final size:24
Alignment explanation
Indices: 2821054--2821125 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
2821044 GATACATTAC
* *
2821054 CTGAATTTTGTTCTGATTTCTGAT
1 CTGAATTCTATTCTGATTTCTGAT
2821078 CT-AGATTCTATTCTG-TTATCTGAT
1 CTGA-ATTCTATTCTGATT-TCTGAT
* *
2821102 CTGAATTCTGTTTTGATTTCTGAT
1 CTGAATTCTATTCTGATTTCTGAT
2821126 ATCTTCGTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
23 3 0.08
24 34 0.85
25 3 0.08
ACGTcount: A:0.18, C:0.14, G:0.15, T:0.53
Consensus pattern (24 bp):
CTGAATTCTATTCTGATTTCTGAT
Found at i:2824034 original size:24 final size:24
Alignment explanation
Indices: 2823997--2824068 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
2823987 GATACATTAC
* *
2823997 CTGAATTTTGTTCTGATTTCTGAT
1 CTGAATTCTATTCTGATTTCTGAT
2824021 CT-AGATTCTATTCTG-TTATCTGAT
1 CTGA-ATTCTATTCTGATT-TCTGAT
* *
2824045 CTGAATTCTGTTTTGATTTCTGAT
1 CTGAATTCTATTCTGATTTCTGAT
2824069 ATCTTCGTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
23 3 0.08
24 34 0.85
25 3 0.08
ACGTcount: A:0.18, C:0.14, G:0.15, T:0.53
Consensus pattern (24 bp):
CTGAATTCTATTCTGATTTCTGAT
Found at i:2826974 original size:24 final size:24
Alignment explanation
Indices: 2826937--2827008 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
2826927 GATACATTAC
* *
2826937 CTGAATTTTGTTCTGATTTCTGAT
1 CTGAATTCTATTCTGATTTCTGAT
2826961 CT-AGATTCTATTCTG-TTATCTGAT
1 CTGA-ATTCTATTCTGATT-TCTGAT
* *
2826985 CTGAATTCTGTTTTGATTTCTGAT
1 CTGAATTCTATTCTGATTTCTGAT
2827009 ATCTTCGTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
23 3 0.08
24 34 0.85
25 3 0.08
ACGTcount: A:0.18, C:0.14, G:0.15, T:0.53
Consensus pattern (24 bp):
CTGAATTCTATTCTGATTTCTGAT
Found at i:2829917 original size:24 final size:24
Alignment explanation
Indices: 2829890--2829951 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
2829880 CTGAATTTTG
2829890 TTCTGATTTCTGATCTAGATTCTA
1 TTCTGATTTCTGATCTAGATTCTA
* *
2829914 TTCTG-TTATCTGATCTATATTCTG
1 TTCTGATT-TCTGATCTAGATTCTA
*
2829938 TTTTGATTTCTGAT
1 TTCTGATTTCTGAT
2829952 ATCTTCGTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 2 0.06
24 29 0.88
25 2 0.06
ACGTcount: A:0.18, C:0.15, G:0.13, T:0.55
Consensus pattern (24 bp):
TTCTGATTTCTGATCTAGATTCTA
Found at i:2832859 original size:24 final size:24
Alignment explanation
Indices: 2832825--2832897 Score: 87
Period size: 24 Copynumber: 3.0 Consensus size: 24
2832815 ATACATTACC
* *
2832825 TGAATTTTGTTCTGATTTCTGATC
1 TGAATTCTGTTCTGATTTCTGATA
2832849 T-AGATTCTGTTCTG-TTATCTGATA
1 TGA-ATTCTGTTCTGATT-TCTGATA
*
2832873 TGAATTCTGTTTTGATTTCTGATA
1 TGAATTCTGTTCTGATTTCTGATA
2832897 T
1 T
2832898 CTTCGTTTAC
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
23 3 0.07
24 36 0.86
25 3 0.07
ACGTcount: A:0.19, C:0.11, G:0.16, T:0.53
Consensus pattern (24 bp):
TGAATTCTGTTCTGATTTCTGATA
Found at i:2837686 original size:48 final size:49
Alignment explanation
Indices: 2837615--2837723 Score: 141
Period size: 48 Copynumber: 2.3 Consensus size: 49
2837605 AAATATTTTA
* *
2837615 TCTGATTTCCGA-CTTGAATTCTGTTATGATACATTACCTGAATTATGT
1 TCTGATTTCTGATCTTGAATTCTGTTATGATACATTACCTGAATTATAT
* * * *
2837663 TCTGATTTCTGATC-TGGATTCTGTTATGATATATTATCTGAATTCTAT
1 TCTGATTTCTGATCTTGAATTCTGTTATGATACATTACCTGAATTATAT
*
2837711 TTTGATTTCTGAT
1 TCTGATTTCTGAT
2837724 ATCTCCGTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
48 52 0.98
49 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.15, T:0.49
Consensus pattern (49 bp):
TCTGATTTCTGATCTTGAATTCTGTTATGATACATTACCTGAATTATAT
Found at i:2837716 original size:24 final size:24
Alignment explanation
Indices: 2837629--2837708 Score: 88
Period size: 24 Copynumber: 3.3 Consensus size: 24
2837619 ATTTCCGACT
* *
2837629 TGAATTCTGTTATGATACATTACC
1 TGAATTCTGTTATGATATATTATC
* * * * *
2837653 TGAATTATGTTCTGATTTCTGATC
1 TGAATTCTGTTATGATATATTATC
*
2837677 TGGATTCTGTTATGATATATTATC
1 TGAATTCTGTTATGATATATTATC
2837701 TGAATTCT
1 TGAATTCT
2837709 ATTTTGATTT
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.25, C:0.12, G:0.15, T:0.47
Consensus pattern (24 bp):
TGAATTCTGTTATGATATATTATC
Found at i:2840137 original size:60 final size:59
Alignment explanation
Indices: 2840027--2840139 Score: 138
Period size: 60 Copynumber: 1.9 Consensus size: 59
2840017 GACTAGGGTG
* * **
2840027 TTGTTTTGTTGAGTCCCTAACTATTAAAAATTGTAAAACTGTCCTTCGACTATATGGTA
1 TTGTTTTGTTGAGTCCCTAACTATTAAAAATTATAAAACTGACCCCCGACTATATGGTA
* * *
2840086 TTGTTTTGTTGAGTCATCTTACTATTAAAAGTTATAAAA-TGACCACCCGACTAT
1 TTGTTTTGTTGAGTC-CCTAACTATTAAAAATTATAAAACTGACC-CCCGACTAT
2840140 TCATATGTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
59 19 0.42
60 26 0.58
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (59 bp):
TTGTTTTGTTGAGTCCCTAACTATTAAAAATTATAAAACTGACCCCCGACTATATGGTA
Found at i:2853039 original size:16 final size:16
Alignment explanation
Indices: 2853018--2853069 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
2853008 CCCAAATCGG
*
2853018 AATCAATCGGAACCAA
1 AATCAACCGGAACCAA
*
2853034 AATCAACCTGAACCAA
1 AATCAACCGGAACCAA
* **
2853050 AATTAACCCAAACCAA
1 AATCAACCGGAACCAA
2853066 AATC
1 AATC
2853070 CACCCGAACA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.52, C:0.29, G:0.06, T:0.13
Consensus pattern (16 bp):
AATCAACCGGAACCAA
Found at i:2853064 original size:32 final size:32
Alignment explanation
Indices: 2853028--2853125 Score: 105
Period size: 32 Copynumber: 3.1 Consensus size: 32
2853018 AATCAATCGG
*
2853028 AACCAAAATCAACCTGAACCAAAATTAACCCA
1 AACCAAAATCAACCTGAACCAAAAATAACCCA
* *
2853060 AACCAAAATCCACCCGAA-CAGAAAATAACCCA
1 AACCAAAATCAACCTGAACCA-AAAATAACCCA
2853092 AACCGAAAAT-AACCCT-AACCAAAAACT-ACCCA
1 AACC-AAAATCAA-CCTGAACCAAAAA-TAACCCA
2853124 AA
1 AA
2853126 TTTAATTTAC
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
31 2 0.04
32 44 0.79
33 10 0.18
ACGTcount: A:0.54, C:0.33, G:0.04, T:0.09
Consensus pattern (32 bp):
AACCAAAATCAACCTGAACCAAAAATAACCCA
Found at i:2853074 original size:16 final size:16
Alignment explanation
Indices: 2853028--2853125 Score: 83
Period size: 16 Copynumber: 6.1 Consensus size: 16
2853018 AATCAATCGG
**
2853028 AACCAAAATCAACCTG
1 AACCAAAATCAACCCA
*
2853044 AACCAAAATTAACCCA
1 AACCAAAATCAACCCA
* *
2853060 AACCAAAATCCACCCG
1 AACCAAAATCAACCCA
*
2853076 AACAGAAAAT-AACCCA
1 AAC-CAAAATCAACCCA
*
2853092 AACCGAAAAT-AACCCT
1 AACC-AAAATCAACCCA
* *
2853108 AACCAAAAACTACCCA
1 AACCAAAATCAACCCA
2853124 AA
1 AA
2853126 TTTAATTTAC
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
15 4 0.06
16 56 0.86
17 5 0.08
ACGTcount: A:0.54, C:0.33, G:0.04, T:0.09
Consensus pattern (16 bp):
AACCAAAATCAACCCA
Found at i:2854698 original size:22 final size:22
Alignment explanation
Indices: 2854683--2854742 Score: 120
Period size: 22 Copynumber: 2.7 Consensus size: 22
2854673 TAAATTCTTA
2854683 AACTTTAAATACTAAAACATAT
1 AACTTTAAATACTAAAACATAT
2854705 AACTTTAAATACTAAAACATAT
1 AACTTTAAATACTAAAACATAT
2854727 AACTTTAAATACTAAA
1 AACTTTAAATACTAAA
2854743 TATGACACAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (22 bp):
AACTTTAAATACTAAAACATAT
Found at i:2860164 original size:3 final size:3
Alignment explanation
Indices: 2860158--2860232 Score: 109
Period size: 3 Copynumber: 24.7 Consensus size: 3
2860148 CTCCATTTTC
2860158 TAT TAT TAT TAT TATT TAT TAT TAT TAT T-T TAT ATAT TAT TAT TAT
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
2860204 TAT TAT T-T TATT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TA
2860233 CAAAAAGGCC
Statistics
Matches: 67, Mismatches: 0, Indels: 10
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.06
3 54 0.81
4 9 0.13
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:2862423 original size:11 final size:12
Alignment explanation
Indices: 2862406--2862439 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
2862396 TTTTTATTAC
2862406 TTATTATTTTTA
1 TTATTATTTTTA
2862418 -TATTATTTTTA
1 TTATTATTTTTA
*
2862429 TTAATATTTTT
1 TTATTATTTTT
2862440 TTCAGGTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (12 bp):
TTATTATTTTTA
Found at i:2865744 original size:15 final size:15
Alignment explanation
Indices: 2865726--2865757 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
2865716 GATCAATACC
2865726 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
2865741 TTTTGCATACATTCA
1 TTTTGCATACATGCA
2865756 TT
1 TT
2865758 ATTTATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:2873113 original size:24 final size:23
Alignment explanation
Indices: 2873086--2873149 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 23
2873076 ATTATGCTTG
*
2873086 AAGAAAAAATGAAAAGAAAAAAAA
1 AAGAAAAAA-GAAAACAAAAAAAA
*
2873110 AAGAGAAGAAGAAGAACAAAAAAAA
1 AAGA-AAAAAGAA-AACAAAAAAAA
2873135 AGAGAAAAAAGAAAA
1 A-AGAAAAAAGAAAA
2873150 AAGAGGGTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
24 9 0.26
25 22 0.65
26 3 0.09
ACGTcount: A:0.80, C:0.02, G:0.17, T:0.02
Consensus pattern (23 bp):
AAGAAAAAAGAAAACAAAAAAAA
Found at i:2873142 original size:9 final size:8
Alignment explanation
Indices: 2873086--2873151 Score: 55
Period size: 8 Copynumber: 8.1 Consensus size: 8
2873076 ATTATGCTTG
2873086 AAGAAAAA
1 AAGAAAAA
*
2873094 ATGAAAAGA
1 AAGAAAA-A
2873103 AA-AAAAA
1 AAGAAAAA
* *
2873110 AAGAGAAG
1 AAGAAAAA
*
2873118 AAGAAGAAC
1 AAGAA-AAA
2873127 AA-AAAAA
1 AAGAAAAA
2873134 AAGAGAAAA
1 AAGA-AAAA
2873143 AAGAAAAA
1 AAGAAAAA
2873151 A
1 A
2873152 GAGGGTCAAG
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
7 7 0.15
8 25 0.54
9 14 0.30
ACGTcount: A:0.80, C:0.02, G:0.17, T:0.02
Consensus pattern (8 bp):
AAGAAAAA
Found at i:2873146 original size:22 final size:23
Alignment explanation
Indices: 2873102--2873151 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
2873092 AAATGAAAAG
2873102 AAAAAAAAAAGAGAAGAAGAAGA
1 AAAAAAAAAAGAGAAGAAGAAGA
2873125 ACAAAAAAAAAGAGAA-AA-AAGA
1 A-AAAAAAAAAGAGAAGAAGAAGA
2873147 AAAAA
1 AAAAA
2873152 GAGGGTCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.15
22 5 0.19
23 3 0.12
24 14 0.54
ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00
Consensus pattern (23 bp):
AAAAAAAAAAGAGAAGAAGAAGA
Found at i:2874075 original size:115 final size:115
Alignment explanation
Indices: 2873830--2874054 Score: 337
Period size: 115 Copynumber: 2.0 Consensus size: 115
2873820 CACGTTCTCG
* * *
2873830 TAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTT
1 TAGTATAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTC
* * * * * *
2873895 GGTATGAACCCCTAAAATCAATCATTGGATTTGAAAGATGAATTTGCTCA
66 GGTAGGAACCACTAAAACCAATCATTGGAATTAAAAGATGAATCTGCTCA
*
2873945 TAGTATAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTC
1 TAGTATAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTC
*
2874010 GGTAGGAACCAC-AGAACCAATCATTGGAATTAAAAGATGAA-CTGC
66 GGTAGGAACCACTAAAACCAATCATTGGAATTAAAAGATGAATCTGC
2874055 ATGATAGTCT
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
113 3 0.03
114 25 0.25
115 71 0.72
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (115 bp):
TAGTATAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTC
GGTAGGAACCACTAAAACCAATCATTGGAATTAAAAGATGAATCTGCTCA
Found at i:2874976 original size:112 final size:112
Alignment explanation
Indices: 2874747--2875299 Score: 658
Period size: 112 Copynumber: 4.9 Consensus size: 112
2874737 GATTTAAATC
** * * * **
2874747 CATCATTCAATGGATCAACAGTGCCAGTTAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCATTTGATGGATCAATATTGCCAGGTAAAGTTCATAATGAGAAGAACTCATCT-CTGAAGGA
*
2874812 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
65 AGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
* *
2874860 CATCATTTGATGGATCAATATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCCTCTGAA-GA
1 CATCATTTGATGGATCAATATTGCCAGGTAAAGTTCATAATGAGAAGAACTCAT-CTCTGAAGGA
* ** *
2874924 AGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATC
65 AGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
* * * **
2874972 CATCACTTGATGGATCAGCT-TTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAG
1 CATCATTTGATGGATCA-ATATTGCCAG-GTAAAGTTCATAATGAGAAGAACTCATCT-CTGAAG
*
2875035 GAAGAAGAAAATTCATAATGAGAAGAATTTGTTCGACCTTTTGTTTGAATT
63 GAAGAAG-AAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
* * * *
2875086 CATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATAAGAAGAACTCGTCATCTGAA-GA
1 CATCATTTGATGGATCAATATTGCCAGGTAAAGTTCATAATGAGAAGAACTCATC-TCTGAAGGA
* *
2875150 AGAAGAAATTCATAATGAGAAGAATTTGTTTAACTTTTTGTTTGAATT
65 AGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
* * *
2875198 CATCATTCGATGGATCAACT-TTTCCA-G-AAAGTTCATAATGAGAAGAACT--TATCTGAAGAG
1 CATCATTTGATGGATCAA-TATTGCCAGGTAAAGTTCATAATGAGAAGAACTCATCTCTG-A-AG
*
2875258 GAAGAAGAAGTTCATAATGAGAA-AATTTTGTTCAACCCTTTT
63 GAAGAAGAAATTCATAATGAGAAGAA-TTTGTTCAA-CCTTTT
2875300 CCAAATTACA
Statistics
Matches: 378, Mismatches: 47, Indels: 32
0.83 0.10 0.07
Matches are distributed among these distances:
107 4 0.01
108 2 0.01
109 3 0.01
110 50 0.13
111 8 0.02
112 155 0.41
113 67 0.18
114 88 0.23
115 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (112 bp):
CATCATTTGATGGATCAATATTGCCAGGTAAAGTTCATAATGAGAAGAACTCATCTCTGAAGGAA
GAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATT
Found at i:2875135 original size:226 final size:223
Alignment explanation
Indices: 2874742--2875299 Score: 870
Period size: 226 Copynumber: 2.5 Consensus size: 223
2874732 GCAAAGATTT
* ** *
2874742 AAATCCATCATTCAATGGATCAACAGTGCCAGTTAAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AAATCCATCATTCGATGGATCAACTTTTCCAG--AAAGTTCATAATGAGAAGAACTCATCTGAAG
2874807 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATG
64 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATG
* * *
2874872 GATCAATATTGCCAGGTAGAGTTCATAATGAGAAGAACTCGTCCTCTGAAGAAGAAGAAATTCAT
129 GATCAACATTGCCAGGTAGAGTTCATAATAAGAAGAACTCGTCATCTGAAGAAGAAGAAATTCAT
2874937 AATGAGAAGAATTTGTTCAACCTTTTGCTC
194 AATGAGAAGAATTTGTTCAACCTTTTGCTC
*
2874967 AAATCCATCACTT-GATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAA
1 AAATCCATCA-TTCGATGGATCAACTTTTCC--AGAAAGTTCATAATGAGAAGAACTCATCTGAA
* *
2875031 GAAGGAAGAAGAAAATTCATAATGAGAAGAATTTGTTCGACCTTTTGTTTGAATTCATCATTTGA
63 GAAGGAAGAAG-AAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGA
2875096 TGGATCAACATTGCCAGGTAGAGTTCATAATAAGAAGAACTCGTCATCTGAAGAAGAAGAAATTC
127 TGGATCAACATTGCCAGGTAGAGTTCATAATAAGAAGAACTCGTCATCTGAAGAAGAAGAAATTC
* * * *
2875161 ATAATGAGAAGAATTTGTTTAACTTTTTGTTT
192 ATAATGAGAAGAATTTGTTCAACCTTTTGCTC
* * *
2875193 GAATTCATCATTCGATGGATCAACTTTTCCAGAAAGTTCATAATGAGAAGAACTTATCTGAAG-A
1 AAATCCATCATTCGATGGATCAACTTTTCCAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA
2875257 GGAAGAAGAAGTTCATAATGAGAA-AATTTTGTTCAACCCTTTT
66 GGAAGAAGAAGTTCATAATGAGAAGAA-TTTGTTCAA-CCTTTT
2875300 CCAAATTACA
Statistics
Matches: 306, Mismatches: 20, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
221 2 0.01
222 23 0.08
223 15 0.05
224 32 0.10
225 65 0.21
226 167 0.55
227 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (223 bp):
AAATCCATCATTCGATGGATCAACTTTTCCAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAA
GGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGA
TCAACATTGCCAGGTAGAGTTCATAATAAGAAGAACTCGTCATCTGAAGAAGAAGAAATTCATAA
TGAGAAGAATTTGTTCAACCTTTTGCTC
Found at i:2875531 original size:3 final size:3
Alignment explanation
Indices: 2875523--2875600 Score: 115
Period size: 3 Copynumber: 25.7 Consensus size: 3
2875513 CTCCATTTTC
2875523 TAT TAT TAT TATT TAT TAT TAT TAT TAT TAT T-T TAT ATAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
2875569 TAT TAT TAT T-T TATT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TA
2875601 CAAACAGGCC
Statistics
Matches: 70, Mismatches: 0, Indels: 10
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.06
3 57 0.81
4 9 0.13
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:2875563 original size:24 final size:24
Alignment explanation
Indices: 2875523--2875600 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
2875513 CTCCATTTTC
2875523 TATTATTATTATTTATTATTATTAT
1 TATTATT-TTATTTATTATTATTAT
*
2875548 TATTATTTTATATATTATTATTAT
1 TATTATTTTATTTATTATTATTAT
2875572 TATTATTTTATTTATTATTATTAT
1 TATTATTTTATTTATTATTATTAT
2875596 TATTA
1 TATTA
2875601 CAAACAGGCC
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
24 44 0.86
25 7 0.14
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (24 bp):
TATTATTTTATTTATTATTATTAT
Found at i:2877269 original size:26 final size:27
Alignment explanation
Indices: 2877240--2877293 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
2877230 ATATTTCTAA
*
2877240 ATAAATAAATAT-TTTTTTATAAATAT
1 ATAAATAAATATATTTTTCATAAATAT
* *
2877266 ATAAATTAATATATTTTTCATAATTAT
1 ATAAATAAATATATTTTTCATAAATAT
2877293 A
1 A
2877294 ATTTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (27 bp):
ATAAATAAATATATTTTTCATAAATAT
Found at i:2877918 original size:23 final size:22
Alignment explanation
Indices: 2877866--2877918 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
2877856 TGACGAATAT
*
2877866 TAAACGAACATGTTCGAAACGT
1 TAAACGAACATGTTCGAAACGC
* *
2877888 TAAACGAACATGTTCGCGAATGC
1 TAAACGAACATGTTCG-AAACGC
2877911 TAAACGAA
1 TAAACGAA
2877919 TAAAATACAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 16 0.59
23 11 0.41
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.21
Consensus pattern (22 bp):
TAAACGAACATGTTCGAAACGC
Found at i:2878020 original size:16 final size:16
Alignment explanation
Indices: 2877984--2878021 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
2877974 TAACGAATGC
2877984 TAAACAAATAAAATAA
1 TAAACAAATAAAATAA
2878000 T-AACAAATTAAAA-AA
1 TAAACAAA-TAAAATAA
2878015 TAAACAA
1 TAAACAA
2878022 GCAAAGACGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (16 bp):
TAAACAAATAAAATAA
Found at i:2878757 original size:37 final size:37
Alignment explanation
Indices: 2878704--2878808 Score: 156
Period size: 37 Copynumber: 2.8 Consensus size: 37
2878694 CCTTTTCGTC
2878704 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
2878741 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
2878778 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
2878809 CCACAAGAAC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:2879404 original size:2 final size:2
Alignment explanation
Indices: 2879397--2879474 Score: 156
Period size: 2 Copynumber: 39.0 Consensus size: 2
2879387 TATTATTACC
2879397 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2879439 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2879475 TAATTATCTT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 76 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2879724 original size:4 final size:4
Alignment explanation
Indices: 2879717--2879743 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
2879707 ATATTCATAT
2879717 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
2879744 TTCCTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:2884294 original size:27 final size:26
Alignment explanation
Indices: 2884237--2884314 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 26
2884227 AGATCCAATC
* *
2884237 AAGAACAAAAAAGAAAAGAAGCAAAAG
1 AAGAACAAAAAACAAAAGAA-AAAAAG
*
2884264 AAGAAAAAAAAACAAAAGAAAAAAAG
1 AAGAACAAAAAACAAAAGAAAAAAAG
*
2884290 AAAGAACAAAAATCAAAAAGAAAAA
1 -AAGAACAAAAAAC-AAAAGAAAAA
2884315 GGGACAAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
26 5 0.11
27 29 0.66
28 10 0.23
ACGTcount: A:0.79, C:0.06, G:0.13, T:0.01
Consensus pattern (26 bp):
AAGAACAAAAAACAAAAGAAAAAAAG
Found at i:2884985 original size:22 final size:22
Alignment explanation
Indices: 2884919--2884988 Score: 131
Period size: 22 Copynumber: 3.2 Consensus size: 22
2884909 CATCAAACTG
2884919 TTGAGCATCAAATGCCAAACCT
1 TTGAGCATCAAATGCCAAACCT
*
2884941 ATGAGCATCAAATGCCAAACCT
1 TTGAGCATCAAATGCCAAACCT
2884963 TTGAGCATCAAATGCCAAACCT
1 TTGAGCATCAAATGCCAAACCT
2884985 TTGA
1 TTGA
2884989 CCAAACATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (22 bp):
TTGAGCATCAAATGCCAAACCT
Found at i:2886020 original size:106 final size:106
Alignment explanation
Indices: 2885813--2887293 Score: 2215
Period size: 106 Copynumber: 14.0 Consensus size: 106
2885803 ATATCGTGCC
* * * * * * *
2885813 ACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAA-CAACAATTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
2885877 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
2885918 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGTTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
*
2885983 AATTTCAGATCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
2886024 ACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTTGTTGTCAATAAACAACTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
* *
2886089 AATTTCAGAGCCAATTTCAACTTCACAACGTAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
2886130 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
*
2886195 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
2886236 ACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
2886301 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * * * *
2886342 ACTCCAGAAAACACAAATTCAACTTCACAACGAAGGGACCGTTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
* *
2886407 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATTTTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
2886448 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
**
2886513 AATTTCAGAGCCAATTTCAACTTCACAATGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
2886554 ACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACTGTTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
2886619 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
2886660 ACTCAAGACAATGCAAGTTCAACTTCACGACGAAGGGACTGCTGGTTGTCAATAAATAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
2886725 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
2886766 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACACCTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
* *
2886831 AATTTTAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
2886872 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTTAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
* *
2886937 AATTTCATAGCCAATTTCAACTTCACAGCGTAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
2886978 ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCACTGGTTGTCAATAAACAACTTCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
* *
2887043 AATTTCAGAGCCAATTTCAACTTCTCAGCGAAGGATATTGA
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * * * * *
2887084 AC-CCAAGGCAACACAAGCTCAACTTCACGACGAAGGGGCGGCTGATTGTCAA-CAA-AA-TT-T
1 ACTCC-AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCC
*
2887144 C-A-TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * * * *
2887184 ACTCGATACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
** * *
2887249 GGTTCCAGAGCCAATTTCAACTTCAC-GACGGAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAG-CGAAGGATATTGG
2887290 ACTC
1 ACTC
2887294 AGAACAATGC
Statistics
Matches: 1257, Mismatches: 109, Indels: 19
0.91 0.08 0.01
Matches are distributed among these distances:
100 78 0.06
101 4 0.00
102 2 0.00
103 4 0.00
104 3 0.00
105 51 0.04
106 1115 0.89
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:2888019 original size:37 final size:37
Alignment explanation
Indices: 2887966--2888070 Score: 156
Period size: 37 Copynumber: 2.8 Consensus size: 37
2887956 CCTTTTCGTC
2887966 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
2888003 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
2888040 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
2888071 CCACAAGCAC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Done.