genome.fa.s8325.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008325.1 Hibiscus syriacus cultivar Beakdansim tig00111029_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165133

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24643--24692	19	2.6	19	81	12	50	56	2	4	38	1.30
24693--24740	22	2.2	22	85	7	62	37	2	0	60	1.09
25843--26211	20	18.5	20	84	4	440	34	26	18	20	1.95
26894--26940	24	2.0	24	87	8	69	25	14	21	38	1.92
29419--29738	19	18.4	19	78	18	360	46	18	20	13	1.83
29419--29719	33	8.8	33	84	12	234	46	18	20	13	1.83
29502--29760	33	7.6	34	81	13	238	46	17	21	14	1.83
29447--29760	52	6.0	52	84	10	419	46	17	21	14	1.83
29767--29868	19	5.6	19	85	12	151	14	23	17	44	1.86
29975--30011	14	2.6	14	91	0	65	45	21	0	32	1.52
31994--32050	14	3.7	14	77	20	60	45	22	21	10	1.82
31975--32067	33	2.8	33	95	0	168	47	21	20	10	1.80
31938--32072	19	7.6	19	76	16	128	45	23	19	11	1.82
32068--32196	19	7.3	19	75	17	125	8	16	28	46	1.76
32068--32159	33	2.8	33	93	3	150	7	17	28	46	1.75
32228--32693	93	5.0	93	98	1	909	46	19	12	21	1.83
32228--32693	185	2.5	185	98	0	907	46	19	12	21	1.83
34395--34451	14	3.7	14	79	20	69	40	24	26	8	1.84
34387--34470	33	2.5	33	92	0	150	44	21	25	9	1.82
34409--34492	19	4.7	19	81	14	97	42	22	23	10	1.85
34504--34558	14	3.6	14	73	21	56	9	25	23	41	1.83
34488--34558	33	2.2	33	94	0	124	8	22	25	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34499--34580	33	2.5	33	89	2	119	9	25	21	42	1.84
34511--34599	20	4.8	20	72	19	75	12	24	19	43	1.85
34679--34749	33	2.2	33	92	0	115	47	18	22	11	1.80
34931--34985	22	2.5	22	81	0	74	20	16	40	23	1.91
35131--35323	20	9.6	20	82	5	219	19	19	25	35	1.95
35131--35323	60	3.2	60	83	0	251	19	19	25	35	1.95
35379--35430	20	2.6	20	96	0	95	21	13	26	38	1.90
56480--56857	202	1.9	194	82	10	469	20	23	17	39	1.92
62217--62378	87	1.9	87	86	3	236	51	15	6	25	1.68
66488--66525	18	2.1	19	85	5	51	31	2	5	60	1.33
68653--68693	19	2.2	19	100	0	82	41	0	17	41	1.49
69033--69076	23	2.0	23	86	8	65	54	2	2	40	1.25
70238--70348	54	2.1	53	84	5	143	23	9	29	36	1.87
74097--74159	31	2.0	31	96	0	117	46	19	4	30	1.70
74584--74623	21	2.0	20	90	5	62	57	0	0	42	0.98
74590--74652	30	2.2	28	83	10	76	58	1	0	39	1.07
74743--74797	2	27.5	2	100	0	110	49	0	0	50	1.00
77189--77338	29	5.2	28	83	7	151	32	4	16	48	1.64
84439--84524	29	3.0	28	84	6	93	27	2	16	53	1.55
84509--84571	29	2.1	29	88	8	92	31	0	6	61	1.21
84441--84609	29	5.9	29	74	15	86	31	2	13	52	1.56
84559--84623	30	2.2	28	78	10	67	36	4	16	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87605--87637	3	11.3	3	93	6	59	33	0	0	66	0.92
89032--89099	33	2.1	31	89	5	100	39	33	11	14	1.83
89032--89099	32	2.1	32	86	10	95	39	33	11	14	1.83
91440--91739	150	2.0	150	95	3	543	35	18	20	25	1.95
94826--94855	13	2.3	13	100	0	60	30	0	26	43	1.55
95614--95672	21	2.7	21	94	5	100	37	20	8	33	1.83
95856--95903	24	2.0	24	100	0	96	20	25	16	37	1.93
105641--105705	23	2.8	23	100	0	130	33	9	21	35	1.85
109327--110154	201	4.1	201	80	5	924	32	14	15	38	1.87
111750--112399	182	3.6	182	85	2	858	27	17	13	42	1.86
114149--114267	39	3.1	38	80	10	134	46	0	16	36	1.54
116736--116804	23	3.0	23	86	0	102	30	26	26	17	1.97
118847--118877	16	1.9	16	93	0	53	58	0	12	29	1.35
119884--119938	23	2.4	23	84	0	74	18	23	27	30	1.97
124792--124866	38	2.0	38	89	0	114	41	18	13	26	1.87
130198--130249	21	2.3	23	74	9	54	34	3	1	59	1.27
130394--130444	15	3.5	15	76	13	61	56	0	1	41	1.10
142812--142849	17	2.3	17	86	4	51	10	10	23	55	1.65
143192--143308	38	3.1	38	85	11	186	41	0	5	52	1.32
153060--153119	30	2.0	30	83	6	77	48	1	6	43	1.39
153342--153385	16	2.9	15	78	15	54	47	2	6	43	1.42
153335--153383	15	3.2	14	78	16	53	46	4	4	44	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156578--156708	60	2.2	59	80	4	147	35	16	4	42	1.69
156628--156755	59	2.2	59	83	8	163	30	21	5	42	1.76
156914--157041	60	2.1	60	78	5	134	38	9	21	31	1.85
160094--160236	72	2.0	72	94	0	250	25	4	34	36	1.75
164109--164139	15	2.1	15	100	0	62	32	19	0	48	1.49

Tables:   1

The End!