genome.fa.s8327.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008327.1 Hibiscus syriacus cultivar Beakdansim tig00111034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76986

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5370--5634	141	1.9	142	87	0	388	25	11	21	41	1.87
9737--9769	15	2.1	16	88	5	50	9	24	15	51	1.72
15793--15833	20	2.0	20	95	0	73	68	14	2	14	1.32
18644--19162	156	3.3	156	87	3	704	26	18	5	48	1.71
18746--19217	155	3.0	148	78	12	459	27	17	5	49	1.70
20431--20513	29	2.9	29	88	0	121	30	13	16	39	1.87
28074--28107	13	2.5	14	85	9	52	23	5	0	70	1.09
30583--30639	27	2.2	25	90	6	87	45	7	0	47	1.30
32806--32888	29	2.9	29	88	0	121	30	12	18	39	1.86
39779--39855	21	3.8	20	70	16	59	27	2	2	67	1.17
39777--39856	41	1.9	42	87	2	117	28	2	2	66	1.18
40440--40473	13	2.5	14	85	9	52	23	5	0	70	1.09
42191--42265	35	2.1	35	92	0	123	33	29	28	9	1.88
42344--42418	24	3.2	23	84	5	105	36	21	17	25	1.95
42348--42433	23	3.7	23	84	3	109	38	19	17	24	1.93
42327--42440	47	2.4	47	80	2	131	40	20	14	24	1.90
43579--43613	18	1.9	18	88	0	52	28	11	0	60	1.32
47233--47286	23	2.4	22	76	14	56	62	3	1	31	1.23
48618--48718	32	3.1	33	78	14	95	17	25	24	31	1.97
53106--53139	16	2.1	16	94	0	59	32	8	26	32	1.87
66313--66709	30	13.2	30	97	0	740	31	23	21	23	1.98
67006--67106	20	5.3	20	72	13	106	15	21	2	59	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66993--67117	37	3.4	37	100	0	250	16	20	2	60	1.47
66995--67117	13	10.0	12	67	23	69	16	21	2	60	1.47
71110--71506	30	13.2	30	96	0	722	31	23	21	22	1.98
71800--71863	20	3.3	20	74	12	80	15	21	3	59	1.50
71787--71874	37	2.4	37	100	0	176	17	20	2	60	1.47
71789--71872	13	6.8	12	70	20	50	16	21	2	59	1.48
71812--71876	13	5.1	13	73	19	57	18	20	1	60	1.45
75221--75272	14	3.8	13	76	14	52	75	5	3	15	1.14
75221--75273	28	1.9	28	85	11	74	73	5	5	15	1.21
75267--75315	24	2.0	24	100	0	98	42	8	24	24	1.81

Tables:   1

The End!