Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008328.1 Hibiscus syriacus cultivar Beakdansim tig00111036_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 520947
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
File 1 of 2
Found at i:13 original size:7 final size:7
Alignment explanation
Indices: 2--10793 Score: 17247
Period size: 7 Copynumber: 1593.7 Consensus size: 7
1 T
*
2 AACCCGA
1 AACCCTA
9 AACCCTA
1 AACCCTA
*
16 ACCCCCTA
1 A-ACCCTA
24 AACCCTA
1 AACCCTA
31 AACCCTA
1 AACCCTA
*
38 AACCCGA
1 AACCCTA
*
45 AACCCGA
1 AACCCTA
52 AACCCT-
1 AACCCTA
58 AACCCT-
1 AACCCTA
64 AACCCTA
1 AACCCTA
71 AACCCT-
1 AACCCTA
77 AACCCTA
1 AACCCTA
*
84 AACCCGAAA
1 AACCC--TA
93 AACCCT-
1 AACCCTA
99 AACCCTA
1 AACCCTA
106 AACCCTA
1 AACCCTA
113 AA-CCTA
1 AACCCTA
119 AACCCTA
1 AACCCTA
*
126 AACCCGA
1 AACCCTA
*
133 AACCC-G
1 AACCCTA
139 AA-CCTA
1 AACCCTA
145 AACCCTA
1 AACCCTA
152 AACCCTA
1 AACCCTA
159 AACCCTA
1 AACCCTA
166 AACCCT-
1 AACCCTA
172 AACCCTA
1 AACCCTA
*
179 AACCTCGA
1 AACC-CTA
187 AACCCT-
1 AACCCTA
193 AACCCTA
1 AACCCTA
*
200 AACCCGAA
1 AACCC-TA
208 AACCCTA
1 AACCCTA
215 AACCCTA
1 AACCCTA
222 AACCC--
1 AACCCTA
227 AACCCT-
1 AACCCTA
233 AACCCTA
1 AACCCTA
240 AACCCTAA
1 AACCCT-A
248 AACCCTA
1 AACCCTA
*
255 AACCCGA
1 AACCCTA
262 AACCCTA
1 AACCCTA
269 AACCCTA
1 AACCCTA
276 AACCCTA
1 AACCCTA
*
283 AACCCAA
1 AACCCTA
290 AACCCTA
1 AACCCTA
297 AACCCTA
1 AACCCTA
304 AACCCTAA
1 AACCCT-A
312 AACCCTA
1 AACCCTA
319 AACCCTA
1 AACCCTA
326 AACCCTA
1 AACCCTA
333 AACCCTA
1 AACCCTA
340 AACCCT-
1 AACCCTA
346 AA-CCTA
1 AACCCTA
352 AACCCTA
1 AACCCTA
359 AACCCTA
1 AACCCTA
366 AACCCTA
1 AACCCTA
373 AACCCTA
1 AACCCTA
380 AACCCTA
1 AACCCTA
387 AACCCTAA
1 AACCCT-A
395 AACCC--
1 AACCCTA
400 AACCCTA
1 AACCCTA
407 AA-CCTA
1 AACCCTA
413 AACCCTA
1 AACCCTA
420 AACCC--
1 AACCCTA
425 -ACCCTA
1 AACCCTA
431 AACCCTA
1 AACCCTA
438 AACCCTA
1 AACCCTA
*
445 AACCCGA
1 AACCCTA
452 AACCCT-
1 AACCCTA
458 AACCCTA
1 AACCCTA
465 AACCC-A
1 AACCCTA
*
471 AACCCGA
1 AACCCTA
478 AACCCT-
1 AACCCTA
484 AACCCTA
1 AACCCTA
491 AACCCT-
1 AACCCTA
497 AACCCTA
1 AACCCTA
504 AACCCTA
1 AACCCTA
511 AACCCTA
1 AACCCTA
518 AACCC--
1 AACCCTA
523 AACCCTA
1 AACCCTA
530 AA--CTA
1 AACCCTA
535 AACCCTA
1 AACCCTA
542 AACCCT-
1 AACCCTA
548 AACCCTA
1 AACCCTA
555 AACCCTA
1 AACCCTA
562 AA--CTA
1 AACCCTA
567 AA-CCTA
1 AACCCTA
573 AACCCTA
1 AACCCTA
580 AA-CCTA
1 AACCCTA
586 AACCCTA
1 AACCCTA
593 AACCCTA
1 AACCCTA
600 AACCCT-
1 AACCCTA
606 AACCCTA
1 AACCCTA
613 AACCCTA
1 AACCCTA
620 AACCCTA
1 AACCCTA
627 AACCCTA
1 AACCCTA
634 AACCCTAA
1 AACCCT-A
642 AACCC-A
1 AACCCTA
648 AACCCTA
1 AACCCTA
655 AACCC-A
1 AACCCTA
661 AACCCTA
1 AACCCTA
668 AA-CCTA
1 AACCCTA
674 AACCCT-
1 AACCCTA
680 AACCCTA
1 AACCCTA
687 AACCCTA
1 AACCCTA
694 AACCCTA
1 AACCCTA
701 AACCCTA
1 AACCCTA
708 AACCCTA
1 AACCCTA
715 AACCCTAA
1 AACCCT-A
723 AACCCT-
1 AACCCTA
729 AACCCTA
1 AACCCTA
736 AACCCT-
1 AACCCTA
742 AACCC--
1 AACCCTA
747 AACCCTA
1 AACCCTA
754 AACCCT-
1 AACCCTA
*
760 AACCCGA
1 AACCCTA
767 AACCCTAA
1 AACCCT-A
775 AACCCTA
1 AACCCTA
782 AACCCTA
1 AACCCTA
789 AACCCTA
1 AACCCTA
796 AACCCTA
1 AACCCTA
803 AACCCTA
1 AACCCTA
810 AACCCTAA
1 AACCCT-A
818 AACCCTA
1 AACCCTA
825 AACCCTA
1 AACCCTA
832 AACCCTA
1 AACCCTA
839 AACCCTA
1 AACCCTA
846 AACCCTA
1 AACCCTA
853 AACCCTA
1 AACCCTA
860 AACCCTA
1 AACCCTA
867 AACCCTA
1 AACCCTA
874 AACCCTA
1 AACCCTA
881 AACCCTA
1 AACCCTA
888 AACCCTA
1 AACCCTA
895 AACCCT-
1 AACCCTA
901 AACCCTA
1 AACCCTA
908 AACCCTA
1 AACCCTA
915 AACCCTA
1 AACCCTA
922 AACCCTA
1 AACCCTA
929 AACCCTA
1 AACCCTA
936 AACCCCCT-
1 AA--CCCTA
944 AACCCTA
1 AACCCTA
951 AACCCTA
1 AACCCTA
958 AACCCT-
1 AACCCTA
964 AACCCTA
1 AACCCTA
971 AACCCTA
1 AACCCTA
978 AACCCTA
1 AACCCTA
985 AACCCTA
1 AACCCTA
992 AACCCTA
1 AACCCTA
999 AACCCTA
1 AACCCTA
1006 AACCCTA
1 AACCCTA
1013 AACCCTA
1 AACCCTA
1020 AACCCTA
1 AACCCTA
1027 AACCCT-
1 AACCCTA
1033 AACCCTA
1 AACCCTA
1040 AACCCT-
1 AACCCTA
1046 AACCCT-
1 AACCCTA
1052 AACCCTA
1 AACCCTA
1059 AACCCTA
1 AACCCTA
1066 AACCCTA
1 AACCCTA
1073 AACCCTA
1 AACCCTA
1080 AACCCTA
1 AACCCTA
1087 AACCCT-
1 AACCCTA
1093 AACCC-A
1 AACCCTA
1099 AACCCT-
1 AACCCTA
1105 AACCCTA
1 AACCCTA
1112 AACCCTA
1 AACCCTA
1119 AACCCT-
1 AACCCTA
1125 AA-CCT-
1 AACCCTA
1130 AA-CCT-
1 AACCCTA
1135 AACCCTA
1 AACCCTA
1142 AACCCTA
1 AACCCTA
1149 AACCCTA
1 AACCCTA
1156 AACCCTA
1 AACCCTA
1163 AACCCTA
1 AACCCTA
1170 AACCCTA
1 AACCCTA
1177 AACCCTA
1 AACCCTA
1184 AACCCTA
1 AACCCTA
1191 AACCCTA
1 AACCCTA
1198 AACCCTA
1 AACCCTA
1205 AACCCTA
1 AACCCTA
1212 AACCCTA
1 AACCCTA
1219 AACCCTA
1 AACCCTA
1226 AACCCTA
1 AACCCTA
1233 AA-CC-A
1 AACCCTA
1238 AACCCTA
1 AACCCTA
1245 AACCCTA
1 AACCCTA
1252 AACCCT-
1 AACCCTA
1258 AACCCTA
1 AACCCTA
1265 AACCCTA
1 AACCCTA
1272 AACCCTA
1 AACCCTA
1279 AACCCTA
1 AACCCTA
1286 AACCCTA
1 AACCCTA
*
1293 AACCCGA
1 AACCCTA
1300 AACCCT-
1 AACCCTA
1306 AACCCTA
1 AACCCTA
1313 AACCCT-
1 AACCCTA
1319 AACCCTA
1 AACCCTA
1326 AACCCT-
1 AACCCTA
1332 AACCCTA
1 AACCCTA
1339 AACCCTA
1 AACCCTA
1346 AACCCTA
1 AACCCTA
1353 AACCCT-
1 AACCCTA
1359 AACCCTA
1 AACCCTA
1366 AACCCTA
1 AACCCTA
1373 AACCCTA
1 AACCCTA
1380 AACCCTA
1 AACCCTA
1387 AACCCTA
1 AACCCTA
1394 AACCCTA
1 AACCCTA
1401 AACCCTA
1 AACCCTA
1408 AACCC-A
1 AACCCTA
1414 AACCCTA
1 AACCCTA
1421 AACCCTA
1 AACCCTA
1428 AACCCTA
1 AACCCTA
1435 AACCCTA
1 AACCCTA
1442 AACCCTA
1 AACCCTA
1449 AACCCTA
1 AACCCTA
1456 AA-CCT-
1 AACCCTA
1461 AACCCTA
1 AACCCTA
1468 AACCCTA
1 AACCCTA
1475 AACCCTA
1 AACCCTA
1482 AACCCTA
1 AACCCTA
1489 AACCC-A
1 AACCCTA
1495 AACCCTA
1 AACCCTA
1502 AACCCT-
1 AACCCTA
1508 AA-CCTA
1 AACCCTA
1514 AACCCTA
1 AACCCTA
1521 AACCCTA
1 AACCCTA
1528 AACCCTA
1 AACCCTA
1535 AACCCT-
1 AACCCTA
1541 AACCCTA
1 AACCCTA
1548 AACCC-A
1 AACCCTA
1554 AACCCTA
1 AACCCTA
1561 AACCCTA
1 AACCCTA
1568 AACCCT-
1 AACCCTA
1574 AACCCTA
1 AACCCTA
1581 AACCCTA
1 AACCCTA
1588 AACCCTA
1 AACCCTA
1595 AACCCTA
1 AACCCTA
1602 AACCC--
1 AACCCTA
1607 -ACCCTA
1 AACCCTA
1613 AACCCTA
1 AACCCTA
1620 AACCCTA
1 AACCCTA
1627 AACCCTA
1 AACCCTA
1634 AACCCT-
1 AACCCTA
1640 AACCCTA
1 AACCCTA
1647 AACCCT-
1 AACCCTA
1653 AACCCT-
1 AACCCTA
1659 AA-CCT-
1 AACCCTA
1664 AACCCT-
1 AACCCTA
1670 AACCCTA
1 AACCCTA
1677 AACCCCCCTA
1 AA---CCCTA
1687 AACCCTA
1 AACCCTA
*
1694 AACCC-C
1 AACCCTA
**
1700 CCCCCTA
1 AACCCTA
1707 AACCCT-
1 AACCCTA
*
1713 AACCCGA
1 AACCCTA
1720 AACCCTA
1 AACCCTA
1727 AA-CCT-
1 AACCCTA
1732 AACCCTA
1 AACCCTA
1739 AACCC--
1 AACCCTA
**
1744 CCCTCCTA
1 AAC-CCTA
1752 AACCCTA
1 AACCCTA
*
1759 ACCCCCTA
1 A-ACCCTA
*
1767 AACCCAA
1 AACCCTA
*
1774 AACCCGA
1 AACCCTA
1781 AACCCTA
1 AACCCTA
1788 AACCCTA
1 AACCCTA
1795 AACCCTA
1 AACCCTA
1802 AACCCT-
1 AACCCTA
1808 AACCCTA
1 AACCCTA
1815 AACCCTA
1 AACCCTA
1822 AACCCTA
1 AACCCTA
1829 AACCCTA
1 AACCCTA
1836 AACCCT-
1 AACCCTA
1842 AACCCTA
1 AACCCTA
1849 AACCCT-
1 AACCCTA
1855 AACCCTA
1 AACCCTA
1862 AACCCTA
1 AACCCTA
1869 AACCCT-
1 AACCCTA
1875 AACCCTA
1 AACCCTA
1882 AACCCTA
1 AACCCTA
1889 AACCCTA
1 AACCCTA
1896 AACCCTA
1 AACCCTA
1903 AACCCTA
1 AACCCTA
1910 AACCCTA
1 AACCCTA
*
1917 AACCC-C
1 AACCCTA
1923 AACCCTA
1 AACCCTA
1930 AACCCT-
1 AACCCTA
1936 AACCCTA
1 AACCCTA
1943 AACCCT-
1 AACCCTA
1949 AACCCTA
1 AACCCTA
1956 AACCCTA
1 AACCCTA
*
1963 ACCCCCCCTA
1 A---ACCCTA
1973 AACCCCCT-
1 AA--CCCTA
1981 AACCCTA
1 AACCCTA
1988 AACCCTA
1 AACCCTA
1995 AACCCTA
1 AACCCTA
2002 AACCCTA
1 AACCCTA
2009 AACCCTA
1 AACCCTA
2016 AACCCTA
1 AACCCTA
2023 AA-CCTA
1 AACCCTA
2029 AACCCTA
1 AACCCTA
2036 AACCCT-
1 AACCCTA
2042 AACCCTA
1 AACCCTA
2049 AACCCTA
1 AACCCTA
2056 AACCCTA
1 AACCCTA
2063 AACCCTA
1 AACCCTA
2070 AACCCTA
1 AACCCTA
2077 AACCCTA
1 AACCCTA
2084 AACCCTA
1 AACCCTA
2091 AACCCTA
1 AACCCTA
2098 AACCCTA
1 AACCCTA
2105 AACCCTA
1 AACCCTA
2112 AACCCTA
1 AACCCTA
2119 AACCCTA
1 AACCCTA
2126 AACCCTA
1 AACCCTA
2133 AACCCTA
1 AACCCTA
2140 AACCCTA
1 AACCCTA
2147 AACCCT-
1 AACCCTA
2153 AACCCTA
1 AACCCTA
2160 AACCCTA
1 AACCCTA
2167 AACCCTA
1 AACCCTA
2174 AACCC-A
1 AACCCTA
2180 AACCCTA
1 AACCCTA
2187 AACCCTA
1 AACCCTA
2194 AACCCTA
1 AACCCTA
2201 AACCCTA
1 AACCCTA
2208 AACCCCTA
1 AA-CCCTA
2216 AACCC-A
1 AACCCTA
2222 AACCCTA
1 AACCCTA
2229 AACCCT-
1 AACCCTA
2235 AACCCTA
1 AACCCTA
2242 AACCCTA
1 AACCCTA
2249 AACCCTA
1 AACCCTA
2256 AACCCTA
1 AACCCTA
2263 AACCCTA
1 AACCCTA
2270 AACCCTA
1 AACCCTA
2277 AACCCTA
1 AACCCTA
2284 AACCCT-
1 AACCCTA
2290 AACCCTA
1 AACCCTA
2297 AACCCTA
1 AACCCTA
2304 AACCCTA
1 AACCCTA
2311 AACCCTA
1 AACCCTA
2318 AACCCTA
1 AACCCTA
2325 AACCCTA
1 AACCCTA
2332 AACCCTA
1 AACCCTA
2339 AACCCTA
1 AACCCTA
2346 AA-CCTA
1 AACCCTA
2352 AACCCT-
1 AACCCTA
2358 AACCCTA
1 AACCCTA
2365 AA-CCTA
1 AACCCTA
2371 AACCCTA
1 AACCCTA
2378 AACCCTA
1 AACCCTA
2385 AACCCTAA
1 AACCCT-A
2393 AACCCT-
1 AACCCTA
2399 AACCCTA
1 AACCCTA
2406 AACCCTA
1 AACCCTA
2413 AACCCTA
1 AACCCTA
2420 AA-CCT-
1 AACCCTA
2425 AACCCTA
1 AACCCTA
*
2432 AACCCCA
1 AACCCTA
2439 AACCCTA
1 AACCCTA
2446 AACCCTA
1 AACCCTA
2453 AACCCT-
1 AACCCTA
2459 AACCCT-
1 AACCCTA
2465 AA-CCTA
1 AACCCTA
2471 AACCCTA
1 AACCCTA
2478 AACCCT-
1 AACCCTA
2484 AACCCTA
1 AACCCTA
2491 AA-CCTA
1 AACCCTA
2497 AACCCTA
1 AACCCTA
2504 AACCCTA
1 AACCCTA
2511 AACCCTA
1 AACCCTA
2518 AACCCTA
1 AACCCTA
2525 AACCCTA
1 AACCCTA
2532 AACCCTA
1 AACCCTA
2539 AACCCTA
1 AACCCTA
2546 AACCCTA
1 AACCCTA
2553 AA-CCTA
1 AACCCTA
2559 AACCCTA
1 AACCCTA
*
2566 AACCCGA
1 AACCCTA
2573 AACCCTA
1 AACCCTA
2580 AACCCTA
1 AACCCTA
2587 AACCCTA
1 AACCCTA
2594 AACCCTA
1 AACCCTA
2601 AACCCTA
1 AACCCTA
2608 AACCCTA
1 AACCCTA
2615 AACCCTA
1 AACCCTA
2622 AACCCTA
1 AACCCTA
2629 AACCCTA
1 AACCCTA
2636 AACCCTA
1 AACCCTA
2643 AACCCTA
1 AACCCTA
2650 AACCCTA
1 AACCCTA
2657 AACCCTA
1 AACCCTA
2664 AACCCTA
1 AACCCTA
2671 AACCCTA
1 AACCCTA
2678 AACCCTA
1 AACCCTA
2685 AACCCT-
1 AACCCTA
2691 AA-CCTA
1 AACCCTA
2697 AACCCTA
1 AACCCTA
2704 AACCCTA
1 AACCCTA
2711 AACCCTA
1 AACCCTA
2718 AACCCTA
1 AACCCTA
2725 AACCCTA
1 AACCCTA
2732 AACCCTA
1 AACCCTA
2739 AACCCTA
1 AACCCTA
2746 AACCCT-
1 AACCCTA
2752 AACCCTA
1 AACCCTA
2759 AA-CCTA
1 AACCCTA
2765 AACCCTA
1 AACCCTA
2772 AACCCTA
1 AACCCTA
2779 AACCCTA
1 AACCCTA
2786 AACCCTA
1 AACCCTA
2793 AACCCTA
1 AACCCTA
2800 AACCCTA
1 AACCCTA
2807 AACCCT-
1 AACCCTA
2813 AACCCTA
1 AACCCTA
2820 AACCCTA
1 AACCCTA
2827 AACCCTA
1 AACCCTA
2834 AACCCTA
1 AACCCTA
2841 AA-CCTA
1 AACCCTA
2847 AACCCTA
1 AACCCTA
2854 AACCCTA
1 AACCCTA
2861 AACCCTA
1 AACCCTA
2868 AACCCTA
1 AACCCTA
2875 AACCCTA
1 AACCCTA
2882 AACCCTA
1 AACCCTA
2889 AACCCTA
1 AACCCTA
2896 AACCCTA
1 AACCCTA
2903 AA-CCTA
1 AACCCTA
2909 AACCCTA
1 AACCCTA
2916 AACCCTA
1 AACCCTA
2923 AACCCTA
1 AACCCTA
2930 AACCC--
1 AACCCTA
2935 -ACCCTA
1 AACCCTA
2941 AACCCTA
1 AACCCTA
2948 AACCCTA
1 AACCCTA
2955 AACCCTA
1 AACCCTA
2962 AACCCTA
1 AACCCTA
2969 AACCCTA
1 AACCCTA
2976 AACCCTA
1 AACCCTA
2983 AACCCT-
1 AACCCTA
*
2989 AACCCGA
1 AACCCTA
2996 AACCCTA
1 AACCCTA
3003 AACCCTA
1 AACCCTA
3010 AACCCT-
1 AACCCTA
3016 AACCCT-
1 AACCCTA
3022 AACCCTA
1 AACCCTA
3029 AACCCTA
1 AACCCTA
3036 AACCCTA
1 AACCCTA
3043 AACCCTA
1 AACCCTA
3050 AACCCTA
1 AACCCTA
3057 AACCCTA
1 AACCCTA
3064 AA-CCTA
1 AACCCTA
3070 AACCCTA
1 AACCCTA
3077 AACCCTA
1 AACCCTA
3084 AACCCTA
1 AACCCTA
3091 AACCCTA
1 AACCCTA
3098 AACCCTA
1 AACCCTA
3105 AACCCTA
1 AACCCTA
3112 AACCCTA
1 AACCCTA
*
3119 AACCCGA
1 AACCCTA
3126 AACCCTA
1 AACCCTA
3133 AACCCTA
1 AACCCTA
3140 AACCCTA
1 AACCCTA
3147 AACCCTA
1 AACCCTA
3154 AACCCTAA
1 AACCCT-A
3162 AACCCTA
1 AACCCTA
3169 AACCCTA
1 AACCCTA
3176 AACCCTA
1 AACCCTA
3183 AACCCTA
1 AACCCTA
3190 AACCCTA
1 AACCCTA
3197 AACCCT-
1 AACCCTA
3203 AACCCTA
1 AACCCTA
3210 AACCCTA
1 AACCCTA
3217 AACCCTA
1 AACCCTA
3224 AACCCTA
1 AACCCTA
3231 AACCCTA
1 AACCCTA
3238 AACCCTA
1 AACCCTA
3245 AACCCTA
1 AACCCTA
3252 AACCCCTA
1 AA-CCCTA
3260 AACCCTA
1 AACCCTA
3267 AACCCTA
1 AACCCTA
3274 AACCCTA
1 AACCCTA
3281 AACCCTA
1 AACCCTA
3288 AACCCTA
1 AACCCTA
3295 AACCCTA
1 AACCCTA
3302 AACCCTA
1 AACCCTA
3309 AACCCTA
1 AACCCTA
3316 AACCCTA
1 AACCCTA
3323 AACCCTA
1 AACCCTA
3330 AACCCTA
1 AACCCTA
3337 AACCCT-
1 AACCCTA
3343 AACCCTA
1 AACCCTA
3350 AACCCT-
1 AACCCTA
3356 AACCCTA
1 AACCCTA
3363 AACCCTA
1 AACCCTA
3370 AACCCTAA
1 AACCCT-A
3378 AACCCT-
1 AACCCTA
3384 AACCCTA
1 AACCCTA
3391 AACCCTA
1 AACCCTA
3398 AA-CCTA
1 AACCCTA
3404 AA-CCTA
1 AACCCTA
3410 AACCCTA
1 AACCCTA
3417 AACCCTA
1 AACCCTA
3424 AACCCTA
1 AACCCTA
3431 AACCCTA
1 AACCCTA
3438 AACCCTA
1 AACCCTA
3445 AACCCTA
1 AACCCTA
3452 AACCCTA
1 AACCCTA
3459 AACCCT-
1 AACCCTA
3465 AACCCTA
1 AACCCTA
3472 AACCCTA
1 AACCCTA
3479 AACCCTA
1 AACCCTA
3486 AACCCTA
1 AACCCTA
3493 AACCCTA
1 AACCCTA
3500 AACCCTA
1 AACCCTA
3507 AACCCTA
1 AACCCTA
3514 AACCCT-
1 AACCCTA
3520 AACCCTA
1 AACCCTA
3527 AACCCTA
1 AACCCTA
3534 AACCCT-
1 AACCCTA
3540 AACCCTA
1 AACCCTA
3547 AACCCT-
1 AACCCTA
3553 AACCCTA
1 AACCCTA
3560 AACCCTA
1 AACCCTA
3567 AACCCTA
1 AACCCTA
3574 AACCCCTA
1 AA-CCCTA
3582 AACCCT-
1 AACCCTA
3588 AA-CC-A
1 AACCCTA
3593 AACCC--
1 AACCCTA
3598 AACCCTA
1 AACCCTA
3605 AACCCTA
1 AACCCTA
3612 AACCCT-
1 AACCCTA
3618 AACCC--
1 AACCCTA
3623 AACCCTA
1 AACCCTA
3630 AACCCTA
1 AACCCTA
3637 AA-CCT-
1 AACCCTA
3642 AACCCTA
1 AACCCTA
3649 AACCCTA
1 AACCCTA
3656 AACCCT-
1 AACCCTA
3662 AACCCTA
1 AACCCTA
3669 AACCCTA
1 AACCCTA
3676 AACCCTA
1 AACCCTA
3683 AACCCTA
1 AACCCTA
3690 AACCCT-
1 AACCCTA
3696 AACCCT-
1 AACCCTA
3702 AA-CCTAA
1 AACCCT-A
3709 AACCCTA
1 AACCCTA
3716 AACCC-A
1 AACCCTA
3722 TAACCCTA
1 -AACCCTA
3730 AACCCTA
1 AACCCTA
3737 AACCCTA
1 AACCCTA
3744 AACCCT-
1 AACCCTA
3750 AACCCTA
1 AACCCTA
3757 AACCCTA
1 AACCCTA
3764 AACCCTA
1 AACCCTA
3771 AACCCTAA
1 AACCCT-A
3779 AACCCTA
1 AACCCTA
3786 AACCC-A
1 AACCCTA
3792 AACCCTA
1 AACCCTA
3799 AACCCTA
1 AACCCTA
3806 AA-CCT-
1 AACCCTA
3811 AACCCTA
1 AACCCTA
3818 AACCCTA
1 AACCCTA
3825 AACCCTA
1 AACCCTA
3832 AACCCTA
1 AACCCTA
3839 AACCCTA
1 AACCCTA
3846 AACCCTA
1 AACCCTA
3853 AACCCTA
1 AACCCTA
3860 AACCCTA
1 AACCCTA
3867 AACCCTA
1 AACCCTA
3874 AACCCTA
1 AACCCTA
3881 AACCCTA
1 AACCCTA
3888 AACCCTA
1 AACCCTA
3895 AACCCT-
1 AACCCTA
3901 AACCCTA
1 AACCCTA
3908 AACCCTA
1 AACCCTA
3915 AACCCT-
1 AACCCTA
3921 AACCCTA
1 AACCCTA
3928 AA-CCTA
1 AACCCTA
3934 AACCCT-
1 AACCCTA
3940 AACCCTA
1 AACCCTA
3947 AACCCTA
1 AACCCTA
3954 CCCAACCCTA
1 ---AACCCTA
3964 AACCCTA
1 AACCCTA
3971 AACCCTA
1 AACCCTA
3978 AACCCTA
1 AACCCTA
3985 AACCCTA
1 AACCCTA
3992 AACCCTA
1 AACCCTA
3999 AACCCTA
1 AACCCTA
4006 AACCCTA
1 AACCCTA
4013 AACCCTA
1 AACCCTA
4020 AACCCTA
1 AACCCTA
4027 AACCCTA
1 AACCCTA
4034 AACCCTA
1 AACCCTA
4041 AACCCT-
1 AACCCTA
4047 -ACCCTA
1 AACCCTA
4053 AA--CTA
1 AACCCTA
4058 AACCCTA
1 AACCCTA
4065 AACCCTA
1 AACCCTA
*
4072 AACCCGA
1 AACCCTA
4079 AACCCTA
1 AACCCTA
4086 AACCC-A
1 AACCCTA
4092 AACCCT-
1 AACCCTA
4098 AACCCTA
1 AACCCTA
4105 AACCCTA
1 AACCCTA
4112 AACCCTA
1 AACCCTA
4119 AACCCTA
1 AACCCTA
4126 AACCCT-
1 AACCCTA
4132 AACCCTA
1 AACCCTA
4139 AACCCTA
1 AACCCTA
4146 AACCCT-
1 AACCCTA
4152 -A-CCTA
1 AACCCTA
4157 AACCCTA
1 AACCCTA
4164 AACCC--
1 AACCCTA
4169 AACCCTA
1 AACCCTA
*
4176 AACCC-G
1 AACCCTA
4182 AACCCTA
1 AACCCTA
4189 AACCCTA
1 AACCCTA
4196 AA-CCTA
1 AACCCTA
4202 AACCCTA
1 AACCCTA
4209 AACCCTA
1 AACCCTA
4216 AA-CCT-
1 AACCCTA
4221 AACCCT-
1 AACCCTA
4227 AA-CCTA
1 AACCCTA
4233 AACCCTA
1 AACCCTA
4240 AACCCTA
1 AACCCTA
4247 AACCCTA
1 AACCCTA
4254 AACCCTA
1 AACCCTA
4261 AACCCTA
1 AACCCTA
4268 AACCCTA
1 AACCCTA
*
4275 AACCCGA
1 AACCCTA
4282 AACCCTA
1 AACCCTA
4289 AACCCTA
1 AACCCTA
4296 AACCCTA
1 AACCCTA
4303 AACCCTA
1 AACCCTA
4310 AACCCT-
1 AACCCTA
4316 AACCCTA
1 AACCCTA
4323 AACCCTA
1 AACCCTA
4330 AACCCT-
1 AACCCTA
4336 AA-CCTA
1 AACCCTA
4342 AACCCTA
1 AACCCTA
4349 AA-CCTA
1 AACCCTA
4355 AACCCTA
1 AACCCTA
4362 AACCCTA
1 AACCCTA
4369 AACCCTA
1 AACCCTA
4376 AACCCTA
1 AACCCTA
4383 AACCCT-
1 AACCCTA
4389 AACCCT-
1 AACCCTA
4395 AACCCTA
1 AACCCTA
4402 AA-CCT-
1 AACCCTA
4407 AACCCTA
1 AACCCTA
4414 AACCCTA
1 AACCCTA
4421 AACCCTA
1 AACCCTA
4428 AACCCTA
1 AACCCTA
4435 AACCCTA
1 AACCCTA
4442 AACCCTA
1 AACCCTA
4449 AA-CCT-
1 AACCCTA
4454 AACCCTA
1 AACCCTA
4461 AACCC--
1 AACCCTA
4466 AACCCTA
1 AACCCTA
4473 AACCCTA
1 AACCCTA
4480 AACCCTA
1 AACCCTA
4487 AACCCTA
1 AACCCTA
4494 AACCCTA
1 AACCCTA
4501 AACCCTA
1 AACCCTA
4508 AACCCTA
1 AACCCTA
4515 AACCCTA
1 AACCCTA
4522 AACCCTA
1 AACCCTA
*
4529 AACCCGA
1 AACCCTA
4536 AACCCTA
1 AACCCTA
4543 AACCCT-
1 AACCCTA
4549 AACCCTA
1 AACCCTA
4556 AACCCTA
1 AACCCTA
4563 AACCCTA
1 AACCCTA
4570 AACCCTA
1 AACCCTA
4577 AA-CCT-
1 AACCCTA
4582 AACCCTA
1 AACCCTA
4589 AACCCT-
1 AACCCTA
4595 AACCCTA
1 AACCCTA
4602 AA-CCT-
1 AACCCTA
4607 AACCCTA
1 AACCCTA
4614 AACCCTA
1 AACCCTA
4621 AACCCTA
1 AACCCTA
4628 AACCCTA
1 AACCCTA
4635 AACCCTA
1 AACCCTA
4642 AACCCTA
1 AACCCTA
4649 AA-CCTA
1 AACCCTA
4655 AA--CTA
1 AACCCTA
4660 AACCCTA
1 AACCCTA
4667 AACCCTA
1 AACCCTA
4674 AACCCTA
1 AACCCTA
4681 AACCCT-
1 AACCCTA
4687 AACCCTA
1 AACCCTA
4694 AACCCTA
1 AACCCTA
4701 AACCCTAAA
1 AACCCT--A
4710 AACCCTA
1 AACCCTA
4717 AACCCTA
1 AACCCTA
4724 AACCCTA
1 AACCCTA
4731 AACCC-A
1 AACCCTA
4737 AACCCTA
1 AACCCTA
4744 AACCCTA
1 AACCCTA
4751 AACCCTA
1 AACCCTA
4758 AA-CCTA
1 AACCCTA
4764 AACCCTA
1 AACCCTA
4771 AACCCTA
1 AACCCTA
4778 AACCCTA
1 AACCCTA
4785 AACCCTA
1 AACCCTA
4792 AACCCTA
1 AACCCTA
4799 AACCCTA
1 AACCCTA
4806 AACCCTA
1 AACCCTA
4813 AACCCTA
1 AACCCTA
4820 AACCCTA
1 AACCCTA
4827 AACCCTA
1 AACCCTA
4834 AACCCTA
1 AACCCTA
4841 AACCC-A
1 AACCCTA
4847 AACCCTA
1 AACCCTA
4854 AACCCT-
1 AACCCTA
4860 AACCCTA
1 AACCCTA
4867 AACCCTA
1 AACCCTA
4874 AACCCTA
1 AACCCTA
4881 AACCCTA
1 AACCCTA
4888 AACCCTA
1 AACCCTA
4895 AACCCTA
1 AACCCTA
4902 AACCCTA
1 AACCCTA
4909 AACCCTA
1 AACCCTA
4916 AACCCT-
1 AACCCTA
4922 AACCCTA
1 AACCCTA
4929 AACCCTA
1 AACCCTA
4936 AACCCT-
1 AACCCTA
4942 AA-CCTA
1 AACCCTA
4948 AACCCTA
1 AACCCTA
4955 AACCCTA
1 AACCCTA
4962 AACCCTA
1 AACCCTA
4969 AACCCT-
1 AACCCTA
4975 AACCCTA
1 AACCCTA
4982 AACCCTA
1 AACCCTA
4989 AACCCT-
1 AACCCTA
4995 AACCCTA
1 AACCCTA
5002 AACCCTA
1 AACCCTA
5009 AACCCTA
1 AACCCTA
5016 AACCCTA
1 AACCCTA
5023 AACCCTA
1 AACCCTA
5030 AACCCTA
1 AACCCTA
5037 AACCCCCTA
1 AA--CCCTA
5046 AACCCTA
1 AACCCTA
5053 AACCCT-
1 AACCCTA
5059 AACCCTA
1 AACCCTA
5066 AACCCT-
1 AACCCTA
5072 AACCC-A
1 AACCCTA
5078 AACCCTA
1 AACCCTA
5085 AACCC-A
1 AACCCTA
5091 AACCCTA
1 AACCCTA
5098 AACCCTA
1 AACCCTA
5105 AACCCTA
1 AACCCTA
5112 AACCCTA
1 AACCCTA
5119 AACCCTA
1 AACCCTA
5126 AACCCTA
1 AACCCTA
5133 AACCCT-
1 AACCCTA
5139 AACCCTA
1 AACCCTA
5146 AACCC-A
1 AACCCTA
5152 AACCC--
1 AACCCTA
5157 AACCCTA
1 AACCCTA
5164 AACCCTA
1 AACCCTA
5171 AACCCT-
1 AACCCTA
5177 AACCCTA
1 AACCCTA
5184 AACCCTA
1 AACCCTA
5191 AA-CC-A
1 AACCCTA
5196 AACCCTA
1 AACCCTA
5203 AACCCTA
1 AACCCTA
5210 AACCCTA
1 AACCCTA
5217 AACCCTA
1 AACCCTA
5224 AA-CCTA
1 AACCCTA
5230 AACCCTA
1 AACCCTA
5237 AACCCTA
1 AACCCTA
*
5244 AACCCGA
1 AACCCTA
5251 AACCCTA
1 AACCCTA
5258 AACCCTA
1 AACCCTA
5265 AA-CCTA
1 AACCCTA
5271 AACCCTA
1 AACCCTA
5278 AACCCTA
1 AACCCTA
5285 AA-CCTA
1 AACCCTA
5291 AACCCTA
1 AACCCTA
5298 AACCCTA
1 AACCCTA
5305 AACCCTA
1 AACCCTA
5312 AACCCTA
1 AACCCTA
5319 AACCCTA
1 AACCCTA
5326 AACCCTA
1 AACCCTA
5333 AACCCTA
1 AACCCTA
5340 AACCC-A
1 AACCCTA
5346 AACCC-A
1 AACCCTA
5352 AACCCTA
1 AACCCTA
5359 AACCCTA
1 AACCCTA
5366 AACCCTA
1 AACCCTA
5373 AACCCTA
1 AACCCTA
5380 AACCCTA
1 AACCCTA
5387 AACCCTA
1 AACCCTA
5394 AACCCTA
1 AACCCTA
5401 AACCCTA
1 AACCCTA
5408 AACCCTA
1 AACCCTA
5415 AACCCTA
1 AACCCTA
5422 AACCCTA
1 AACCCTA
5429 AACCCTA
1 AACCCTA
5436 AACCCTA
1 AACCCTA
5443 AACCCTA
1 AACCCTA
5450 AACCCTA
1 AACCCTA
*
5457 AA-CCGA
1 AACCCTA
5463 AACCCT-
1 AACCCTA
5469 AACCCTA
1 AACCCTA
5476 AACCCTA
1 AACCCTA
5483 AACCCT-
1 AACCCTA
5489 AACCCTA
1 AACCCTA
5496 AACCCTA
1 AACCCTA
5503 AACCCTA
1 AACCCTA
5510 AACCCTA
1 AACCCTA
5517 AACCCTA
1 AACCCTA
5524 AA-CCTA
1 AACCCTA
5530 AACCC-A
1 AACCCTA
5536 AACCCT-
1 AACCCTA
5542 AACCCTA
1 AACCCTA
5549 AACCCTA
1 AACCCTA
5556 AACCCTA
1 AACCCTA
5563 AACCCCCTA
1 AA--CCCTA
5572 AACCCTA
1 AACCCTA
5579 AACCCTA
1 AACCCTA
5586 AACCCTA
1 AACCCTA
5593 AACCCTA
1 AACCCTA
5600 AACCCT-
1 AACCCTA
5606 AACCCTA
1 AACCCTA
5613 AA-CC-A
1 AACCCTA
5618 AACCCTA
1 AACCCTA
5625 AACCCTA
1 AACCCTA
5632 AACCCTA
1 AACCCTA
5639 AACCCTA
1 AACCCTA
5646 AACCCTA
1 AACCCTA
5653 AACCC--
1 AACCCTA
5658 AACCCTA
1 AACCCTA
5665 AACCCTA
1 AACCCTA
5672 AA-CCTA
1 AACCCTA
5678 AACCCT-
1 AACCCTA
5684 AACCCTA
1 AACCCTA
5691 AACCCT-
1 AACCCTA
5697 AACCCTA
1 AACCCTA
5704 AACCCTA
1 AACCCTA
5711 AACCCTA
1 AACCCTA
5718 AACCCTA
1 AACCCTA
5725 AACCCTA
1 AACCCTA
5732 AACCCTA
1 AACCCTA
5739 AACCCTA
1 AACCCTA
5746 AA-CCTA
1 AACCCTA
5752 AACCCTA
1 AACCCTA
5759 AACCCTA
1 AACCCTA
5766 AACCCTA
1 AACCCTA
5773 AACCCTA
1 AACCCTA
5780 AACCCTA
1 AACCCTA
5787 AA-CCTA
1 AACCCTA
5793 AACCCTA
1 AACCCTA
5800 AACCCTA
1 AACCCTA
5807 AACCCTA
1 AACCCTA
5814 AACCCTA
1 AACCCTA
5821 AACCC--
1 AACCCTA
5826 AACCCTA
1 AACCCTA
5833 AACCCTA
1 AACCCTA
5840 AACCCTA
1 AACCCTA
5847 AACCCTA
1 AACCCTA
5854 AACCCTA
1 AACCCTA
5861 AACCCTA
1 AACCCTA
5868 AACCCTA
1 AACCCTA
5875 AACCCT-
1 AACCCTA
5881 AACCCTA
1 AACCCTA
5888 AACCCT-
1 AACCCTA
5894 AACCCTA
1 AACCCTA
5901 AACCCTA
1 AACCCTA
5908 AACCCTA
1 AACCCTA
5915 AACCCTA
1 AACCCTA
5922 AACCCTA
1 AACCCTA
5929 AACCCTA
1 AACCCTA
5936 AACCCTA
1 AACCCTA
5943 AACCCT-
1 AACCCTA
5949 AACCCTA
1 AACCCTA
5956 AACCCTA
1 AACCCTA
5963 AACCCTA
1 AACCCTA
5970 AACCCTA
1 AACCCTA
5977 AACCCTA
1 AACCCTA
5984 AA-CCTA
1 AACCCTA
5990 AACCCTA
1 AACCCTA
5997 AACCCTA
1 AACCCTA
6004 AACCCTA
1 AACCCTA
6011 AACCCTA
1 AACCCTA
6018 AACCCTA
1 AACCCTA
*
6025 AACCCGA
1 AACCCTA
6032 AACCCTA
1 AACCCTA
6039 AACCCTA
1 AACCCTA
6046 AACCCTA
1 AACCCTA
*
6053 ACCCCCTA
1 A-ACCCTA
6061 AACCCTA
1 AACCCTA
6068 AACCCT-
1 AACCCTA
6074 AACCCTA
1 AACCCTA
6081 AACCCTA
1 AACCCTA
6088 AACCCTA
1 AACCCTA
6095 AACCCTA
1 AACCCTA
6102 AACCCT-
1 AACCCTA
6108 AA-CCTA
1 AACCCTA
6114 AACCCTA
1 AACCCTA
6121 AACCCTA
1 AACCCTA
6128 AACCC-A
1 AACCCTA
6134 AACCCTA
1 AACCCTA
6141 AACCCTA
1 AACCCTA
6148 AACCC--
1 AACCCTA
6153 AACCCTA
1 AACCCTA
*
6160 AACCCGA
1 AACCCTA
6167 AACCCTA
1 AACCCTA
6174 AACCCTA
1 AACCCTA
6181 AACCCTA
1 AACCCTA
6188 AACCCTA
1 AACCCTA
6195 AA-CCTA
1 AACCCTA
6201 AACCCTA
1 AACCCTA
6208 AACCCTA
1 AACCCTA
6215 AACCCTA
1 AACCCTA
6222 AACCCTA
1 AACCCTA
6229 AACCCTA
1 AACCCTA
6236 AACCCTA
1 AACCCTA
6243 AACCCTA
1 AACCCTA
6250 AACCCTA
1 AACCCTA
6257 AACCCTAA
1 AACCCT-A
6265 AACCCTA
1 AACCCTA
6272 AACCCTA
1 AACCCTA
6279 AACCCTA
1 AACCCTA
6286 AACCCTA
1 AACCCTA
6293 AACCCTA
1 AACCCTA
6300 AACCCTA
1 AACCCTA
6307 AACCCTA
1 AACCCTA
6314 AACCCTA
1 AACCCTA
6321 AACCCTA
1 AACCCTA
6328 AACCCT-
1 AACCCTA
6334 AACCCTA
1 AACCCTA
6341 AACCCTA
1 AACCCTA
6348 AACCCTA
1 AACCCTA
6355 AACCCTA
1 AACCCTA
6362 AACCCTA
1 AACCCTA
6369 AA-CCTA
1 AACCCTA
6375 AACCCTA
1 AACCCTA
6382 AACCCTA
1 AACCCTA
6389 AACCCTA
1 AACCCTA
6396 AACCCTA
1 AACCCTA
6403 AACCCTA
1 AACCCTA
6410 AACCCTA
1 AACCCTA
6417 AACCCT-
1 AACCCTA
6423 AACCC-A
1 AACCCTA
6429 AACCCT-
1 AACCCTA
6435 AACCCTA
1 AACCCTA
6442 AACCCTA
1 AACCCTA
6449 AACCCTA
1 AACCCTA
6456 AACCC-A
1 AACCCTA
6462 AACCCTA
1 AACCCTA
6469 AACCCTA
1 AACCCTA
6476 AACCCTA
1 AACCCTA
6483 AACCCTA
1 AACCCTA
6490 AACCCTA
1 AACCCTA
6497 AACCC-A
1 AACCCTA
6503 AACCCTA
1 AACCCTA
6510 AACCCTA
1 AACCCTA
6517 AACCCTA
1 AACCCTA
6524 AACCCTA
1 AACCCTA
6531 AACCCTA
1 AACCCTA
6538 AACCCT-
1 AACCCTA
6544 -ACCCTA
1 AACCCTA
6550 AACCCTA
1 AACCCTA
6557 AACCCTA
1 AACCCTA
6564 AACCCTA
1 AACCCTA
*
6571 AACCCGA
1 AACCCTA
6578 AACCCTAA
1 AACCCT-A
6586 AACCCT-
1 AACCCTA
6592 AACCCTA
1 AACCCTA
6599 AACCCTA
1 AACCCTA
6606 AACCCTA
1 AACCCTA
6613 AACCCT-
1 AACCCTA
6619 AACCCTA
1 AACCCTA
6626 AACCCTA
1 AACCCTA
6633 AACCCT-
1 AACCCTA
6639 AACCCTA
1 AACCCTA
6646 AACCC-A
1 AACCCTA
6652 AACCCTA
1 AACCCTA
6659 AACCCTA
1 AACCCTA
6666 AACCCTA
1 AACCCTA
6673 AACCCTA
1 AACCCTA
6680 AACCCTA
1 AACCCTA
6687 AACCCTA
1 AACCCTA
6694 AACCCTA
1 AACCCTA
6701 AACCCTA
1 AACCCTA
6708 AACCC-A
1 AACCCTA
6714 AACCCTA
1 AACCCTA
6721 AACCCTA
1 AACCCTA
6728 AACCCT-
1 AACCCTA
6734 AACCCT-
1 AACCCTA
6740 AACCCTA
1 AACCCTA
6747 AA-CCTA
1 AACCCTA
6753 AACCCTA
1 AACCCTA
6760 AACCCTA
1 AACCCTA
6767 AACCCTA
1 AACCCTA
6774 AACCCCCTA
1 AA--CCCTA
6783 AA-CCTA
1 AACCCTA
6789 AACCCTA
1 AACCCTA
6796 AACCC--
1 AACCCTA
6801 AACCCTA
1 AACCCTA
6808 AACCCTA
1 AACCCTA
6815 AA-CCTA
1 AACCCTA
6821 AACCCTA
1 AACCCTA
6828 AACCCTA
1 AACCCTA
6835 AACCCTA
1 AACCCTA
6842 AACCCTA
1 AACCCTA
6849 AACCCTA
1 AACCCTA
6856 AA-CCTA
1 AACCCTA
6862 AACCCTA
1 AACCCTA
6869 AACCCTA
1 AACCCTA
6876 AACCCT-
1 AACCCTA
6882 AACCCTA
1 AACCCTA
6889 AACCCTA
1 AACCCTA
*
6896 AACCCGA
1 AACCCTA
6903 AACCCTA
1 AACCCTA
6910 AACCCTA
1 AACCCTA
6917 AACCCTA
1 AACCCTA
6924 AACCCTA
1 AACCCTA
6931 AACCCTA
1 AACCCTA
6938 AACCCTA
1 AACCCTA
6945 AACCCTA
1 AACCCTA
6952 AACCCTA
1 AACCCTA
6959 AACCCTA
1 AACCCTA
6966 AACCCTA
1 AACCCTA
6973 AACCCTA
1 AACCCTA
6980 AACCCT-
1 AACCCTA
6986 AACCC-A
1 AACCCTA
6992 AACCCTA
1 AACCCTA
6999 AACCCTA
1 AACCCTA
7006 AACCCTA
1 AACCCTA
7013 AACCCTA
1 AACCCTA
7020 AACCCTA
1 AACCCTA
7027 AACCC-A
1 AACCCTA
7033 AACCCTA
1 AACCCTA
7040 AACCCTA
1 AACCCTA
7047 AACCCTA
1 AACCCTA
7054 AACCCTA
1 AACCCTA
7061 AA-CCTA
1 AACCCTA
7067 AACCCTA
1 AACCCTA
7074 AACCCTA
1 AACCCTA
7081 AACCCTA
1 AACCCTA
7088 AACCCTA
1 AACCCTA
7095 AACCC-A
1 AACCCTA
7101 AACCCTA
1 AACCCTA
7108 AACCCTA
1 AACCCTA
7115 AACCCT-
1 AACCCTA
7121 AACCCTA
1 AACCCTA
7128 AACCC-A
1 AACCCTA
7134 AACCCTA
1 AACCCTA
7141 AACCCT-
1 AACCCTA
7147 AACCCTA
1 AACCCTA
7154 AACCCTA
1 AACCCTA
7161 AACCCTA
1 AACCCTA
7168 AACCCTA
1 AACCCTA
7175 AACCCTA
1 AACCCTA
7182 AACCCT-
1 AACCCTA
7188 AACCCTA
1 AACCCTA
7195 AA-CCTA
1 AACCCTA
7201 AACCCTAA
1 AACCCT-A
7209 AACCCTA
1 AACCCTA
7216 AACCCTA
1 AACCCTA
7223 AACCCTA
1 AACCCTA
7230 AACCCTA
1 AACCCTA
7237 AACCCTA
1 AACCCTA
7244 AACCCTA
1 AACCCTA
7251 AACCCTAAA
1 AACCCT--A
7260 AACCCTA
1 AACCCTA
7267 AACCCTA
1 AACCCTA
7274 AACCCTA
1 AACCCTA
7281 AACCCT-
1 AACCCTA
7287 AACCCT-
1 AACCCTA
7293 AACCCTA
1 AACCCTA
7300 AACCCTA
1 AACCCTA
7307 AACCCTA
1 AACCCTA
7314 AACCCTA
1 AACCCTA
7321 AACCCTA
1 AACCCTA
7328 AACCCT-
1 AACCCTA
7334 -A-CCTA
1 AACCCTA
7339 AACCCTA
1 AACCCTA
7346 AACCCTA
1 AACCCTA
7353 AACCCTA
1 AACCCTA
7360 AACCC--
1 AACCCTA
7365 AA-CCTA
1 AACCCTA
7371 AACCCTA
1 AACCCTA
7378 AACCCTA
1 AACCCTA
7385 AACCCTA
1 AACCCTA
7392 AACCCTA
1 AACCCTA
7399 AACCCTA
1 AACCCTA
7406 AACCCTA
1 AACCCTA
7413 AACCCCCTA
1 AA--CCCTA
7422 AACCCTA
1 AACCCTA
7429 AACCCTA
1 AACCCTA
7436 AACCCTA
1 AACCCTA
7443 AACCCTA
1 AACCCTA
7450 AACCCTA
1 AACCCTA
7457 AACCCTA
1 AACCCTA
7464 AACCCTA
1 AACCCTA
7471 AACCCTA
1 AACCCTA
7478 AACCCTA
1 AACCCTA
7485 AACCCTA
1 AACCCTA
7492 AACCCTAA
1 AACCCT-A
7500 AACCCTA
1 AACCCTA
7507 AACCCTA
1 AACCCTA
7514 AACCCT-
1 AACCCTA
7520 AACCCTA
1 AACCCTA
7527 AACCCTA
1 AACCCTA
7534 AACCCTA
1 AACCCTA
7541 AACCCTA
1 AACCCTA
7548 AACCCT-
1 AACCCTA
7554 AACCCTA
1 AACCCTA
7561 AACCCTA
1 AACCCTA
7568 AACCCTA
1 AACCCTA
7575 AACCCTA
1 AACCCTA
7582 AACCCTA
1 AACCCTA
7589 AACCCT-
1 AACCCTA
7595 AACCCTA
1 AACCCTA
7602 AACCCTA
1 AACCCTA
7609 AACCCTA
1 AACCCTA
7616 AACCCTA
1 AACCCTA
7623 AACCCTA
1 AACCCTA
7630 AACCCTA
1 AACCCTA
7637 AACCCTA
1 AACCCTA
7644 AACCCTA
1 AACCCTA
7651 AACCCT-
1 AACCCTA
7657 AACCC-A
1 AACCCTA
7663 AACCCTA
1 AACCCTA
7670 AACCCTA
1 AACCCTA
7677 AACCCTA
1 AACCCTA
7684 AACCCTA
1 AACCCTA
7691 AACCCTA
1 AACCCTA
7698 AACCCTA
1 AACCCTA
7705 AACCCTA
1 AACCCTA
7712 AACCCTA
1 AACCCTA
7719 AACCCTA
1 AACCCTA
7726 AA-CCTA
1 AACCCTA
7732 AACCCTA
1 AACCCTA
7739 AACCCTA
1 AACCCTA
7746 AACCCTA
1 AACCCTA
7753 AACCCT-
1 AACCCTA
7759 -ACCCTA
1 AACCCTA
7765 AACCCTA
1 AACCCTA
7772 AACCCTA
1 AACCCTA
7779 AACCCTA
1 AACCCTA
7786 AACCCTA
1 AACCCTA
7793 AACCCTA
1 AACCCTA
7800 AACCCTA
1 AACCCTA
7807 AACCCTA
1 AACCCTA
7814 AACCCTA
1 AACCCTA
7821 AACCCT-
1 AACCCTA
7827 AACCCTA
1 AACCCTA
7834 AACCCTA
1 AACCCTA
7841 AACCCTA
1 AACCCTA
7848 AACCCTA
1 AACCCTA
7855 AACCCTA
1 AACCCTA
7862 AACCCTA
1 AACCCTA
7869 AACCCTA
1 AACCCTA
7876 AACCCTA
1 AACCCTA
7883 AACCCTA
1 AACCCTA
7890 AACCCTA
1 AACCCTA
7897 AACCCTA
1 AACCCTA
7904 AACCCT-
1 AACCCTA
7910 AACCCTA
1 AACCCTA
7917 AA--CTA
1 AACCCTA
7922 AACCCTA
1 AACCCTA
7929 AACCCT-
1 AACCCTA
7935 AACCCTA
1 AACCCTA
7942 AACCCTA
1 AACCCTA
7949 AACCCTA
1 AACCCTA
7956 AACCCT-
1 AACCCTA
7962 AACCCTA
1 AACCCTA
7969 AACCCTA
1 AACCCTA
7976 AA-CCTA
1 AACCCTA
7982 AA-CCTA
1 AACCCTA
7988 AACCCTA
1 AACCCTA
7995 AACCCT-
1 AACCCTA
8001 -ACCCTA
1 AACCCTA
8007 AACCCT-
1 AACCCTA
8013 AACCCTA
1 AACCCTA
8020 AACCCTA
1 AACCCTA
8027 AACCCTAAA
1 AACCCT--A
8036 AACCCTA
1 AACCCTA
8043 AACCCTA
1 AACCCTA
8050 AACCCT-
1 AACCCTA
8056 AACCCTA
1 AACCCTA
8063 AACCCTA
1 AACCCTA
8070 AACCCTA
1 AACCCTA
8077 AACCCTA
1 AACCCTA
8084 AACCCTAA
1 AACCCT-A
8092 AACCCTA
1 AACCCTA
8099 AACCCTA
1 AACCCTA
8106 AACCCTA
1 AACCCTA
8113 AACCCTA
1 AACCCTA
8120 AACCCTA
1 AACCCTA
8127 AACCCTA
1 AACCCTA
8134 AACCCTA
1 AACCCTA
8141 AACCCTA
1 AACCCTA
8148 AACCCTA
1 AACCCTA
8155 AACCCTA
1 AACCCTA
8162 AACCCT-
1 AACCCTA
8168 AACCCTA
1 AACCCTA
8175 AACCCTA
1 AACCCTA
8182 AACCCTA
1 AACCCTA
8189 AACCCTA
1 AACCCTA
8196 AACCCTA
1 AACCCTA
8203 AACCCTA
1 AACCCTA
8210 AACCCTA
1 AACCCTA
8217 AACCCT-
1 AACCCTA
8223 -ACCCTA
1 AACCCTA
8229 AACCCTA
1 AACCCTA
8236 AACCCT-
1 AACCCTA
8242 AA-CCT-
1 AACCCTA
8247 AACCCTA
1 AACCCTA
8254 AACCCTA
1 AACCCTA
8261 AACCCTA
1 AACCCTA
8268 AACCCTA
1 AACCCTA
8275 AA-CCTA
1 AACCCTA
8281 AACCCT-
1 AACCCTA
8287 -ACCCTA
1 AACCCTA
8293 AACCCT-
1 AACCCTA
8299 AACCCTA
1 AACCCTA
8306 AACCCTA
1 AACCCTA
8313 AACCCTA
1 AACCCTA
8320 AACCCTA
1 AACCCTA
8327 AACCCTAA
1 AACCCT-A
8335 AACCCTA
1 AACCCTA
8342 AACCCTA
1 AACCCTA
8349 AACCCTA
1 AACCCTA
8356 AACCCTA
1 AACCCTA
8363 AACCCTA
1 AACCCTA
8370 AACCCTA
1 AACCCTA
8377 AACCCTA
1 AACCCTA
8384 AACCCTA
1 AACCCTA
8391 AACCCTA
1 AACCCTA
8398 AACCCT-
1 AACCCTA
8404 AACCCTA
1 AACCCTA
8411 AACCCTA
1 AACCCTA
8418 AACCCTA
1 AACCCTA
8425 AACCCTA
1 AACCCTA
8432 AACCCT-
1 AACCCTA
8438 AACCCTAA
1 AACCCT-A
8446 AACCCTA
1 AACCCTA
8453 AACCCTA
1 AACCCTA
8460 AACCCTA
1 AACCCTA
8467 AACCCTA
1 AACCCTA
8474 AACCCTA
1 AACCCTA
8481 AACCCTA
1 AACCCTA
8488 AACCCTA
1 AACCCTA
8495 AA-CCT-
1 AACCCTA
8500 AACCCTA
1 AACCCTA
8507 AACCCTA
1 AACCCTA
8514 AACCCTA
1 AACCCTA
8521 AACCCTA
1 AACCCTA
8528 AACCCTA
1 AACCCTA
8535 AACCCTA
1 AACCCTA
8542 AACCCTA
1 AACCCTA
8549 AACCCTA
1 AACCCTA
8556 AACCCTA
1 AACCCTA
8563 AACCCTA
1 AACCCTA
8570 AACCCTA
1 AACCCTA
8577 AA-CCTA
1 AACCCTA
8583 AACCCTA
1 AACCCTA
8590 AACCCT-
1 AACCCTA
8596 AACCCT-
1 AACCCTA
8602 AACCCTA
1 AACCCTA
8609 AACCCTA
1 AACCCTA
8616 AACCCTA
1 AACCCTA
8623 AACCCTA
1 AACCCTA
8630 AACCCTA
1 AACCCTA
8637 AACCCTA
1 AACCCTA
8644 AA-CC--
1 AACCCTA
8648 AACCCTA
1 AACCCTA
8655 AACCCTA
1 AACCCTA
8662 AACCCTA
1 AACCCTA
8669 AACCCTA
1 AACCCTA
8676 AACCCT-
1 AACCCTA
8682 AACCCT-
1 AACCCTA
8688 AACCCTA
1 AACCCTA
8695 AACCCT-
1 AACCCTA
8701 AACCCTA
1 AACCCTA
8708 AACCCTA
1 AACCCTA
8715 AACCCTA
1 AACCCTA
8722 AACCCTA
1 AACCCTA
8729 AACCCTA
1 AACCCTA
8736 AACCCTA
1 AACCCTA
8743 AACCCTA
1 AACCCTA
8750 AACCCTA
1 AACCCTA
8757 AACCCTA
1 AACCCTA
8764 AA-CCTA
1 AACCCTA
*
8770 ACCCCT-
1 AACCCTA
8776 AACCCTA
1 AACCCTA
8783 AACCCTA
1 AACCCTA
8790 AACCCTA
1 AACCCTA
8797 AACCCTA
1 AACCCTA
8804 AA-CCT-
1 AACCCTA
8809 AACCCTA
1 AACCCTA
8816 AACCCTA
1 AACCCTA
8823 AACCCTAA
1 AACCCT-A
8831 AACCCT-
1 AACCCTA
8837 AACCCTA
1 AACCCTA
8844 AACCCTA
1 AACCCTA
8851 AACCCTA
1 AACCCTA
8858 AACCCTA
1 AACCCTA
8865 AACCCTA
1 AACCCTA
*
8872 AACCC-C
1 AACCCTA
8878 AACCCTA
1 AACCCTA
8885 AACCCTA
1 AACCCTA
8892 AACCCTA
1 AACCCTA
8899 AACCCTA
1 AACCCTA
8906 AACCCTA
1 AACCCTA
8913 AACCCTA
1 AACCCTA
8920 AACCCTA
1 AACCCTA
8927 AACCCT-
1 AACCCTA
8933 AACCCTA
1 AACCCTA
8940 AACCCTA
1 AACCCTA
8947 AACCCTA
1 AACCCTA
8954 AACCCTA
1 AACCCTA
8961 AACCCTA
1 AACCCTA
8968 AACCCTA
1 AACCCTA
8975 AACCCTA
1 AACCCTA
8982 AACCCTA
1 AACCCTA
8989 AACCCTA
1 AACCCTA
8996 AACCCTA
1 AACCCTA
9003 AACCCTA
1 AACCCTA
9010 AACCCTA
1 AACCCTA
9017 AACCC-A
1 AACCCTA
9023 AACCCTA
1 AACCCTA
9030 AACCCTA
1 AACCCTA
9037 AACCCTA
1 AACCCTA
9044 AACCCTA
1 AACCCTA
9051 AACCCT-
1 AACCCTA
9057 AACCCTA
1 AACCCTA
9064 AACCCTA
1 AACCCTA
9071 AACCCT-
1 AACCCTA
9077 AACCCTA
1 AACCCTA
9084 AACCCTA
1 AACCCTA
9091 AACCCTA
1 AACCCTA
9098 AACCCTA
1 AACCCTA
9105 AACCCT-
1 AACCCTA
9111 AACCCTA
1 AACCCTA
9118 AACCCTA
1 AACCCTA
9125 AACCCTA
1 AACCCTA
9132 AACCC-A
1 AACCCTA
9138 AACCCTA
1 AACCCTA
9145 AACCCTA
1 AACCCTA
9152 AACCCTA
1 AACCCTA
9159 AACCCTA
1 AACCCTA
9166 AACCCT-
1 AACCCTA
9172 AACCCTA
1 AACCCTA
9179 AACCCTA
1 AACCCTA
9186 AACCCTA
1 AACCCTA
9193 AACCCTA
1 AACCCTA
9200 AACCCTA
1 AACCCTA
9207 AACCCT-
1 AACCCTA
9213 AACCCTA
1 AACCCTA
9220 AACCCTA
1 AACCCTA
9227 AACCCTA
1 AACCCTA
9234 AACCCTA
1 AACCCTA
9241 AACCCTA
1 AACCCTA
9248 AACCCTA
1 AACCCTA
9255 AACCCT-
1 AACCCTA
9261 AACCCTA
1 AACCCTA
9268 AACCCT-
1 AACCCTA
9274 AACCC-A
1 AACCCTA
9280 AACCCTA
1 AACCCTA
9287 AACCCTA
1 AACCCTA
9294 AACCCTA
1 AACCCTA
9301 AACCCTA
1 AACCCTA
9308 AACCCTA
1 AACCCTA
9315 AACCCTA
1 AACCCTA
9322 AA-CC--
1 AACCCTA
9326 AACCCTA
1 AACCCTA
9333 AACCCTA
1 AACCCTA
9340 AACCCTA
1 AACCCTA
9347 AACCCT-
1 AACCCTA
9353 AACCCTA
1 AACCCTA
*
9360 AACCCCAA
1 AA-CCCTA
9368 AACCCTA
1 AACCCTA
9375 AACCCTA
1 AACCCTA
9382 AACCCTA
1 AACCCTA
9389 AA-CCTA
1 AACCCTA
9395 AACCCTA
1 AACCCTA
9402 AACCCT-
1 AACCCTA
9408 AACCCTA
1 AACCCTA
9415 AACCCTA
1 AACCCTA
9422 AACCCTA
1 AACCCTA
9429 AACCCTA
1 AACCCTA
9436 AACCCTA
1 AACCCTA
9443 AACCCTA
1 AACCCTA
9450 AACCCTA
1 AACCCTA
9457 AACCCTA
1 AACCCTA
9464 AACCC-A
1 AACCCTA
9470 AACCCTA
1 AACCCTA
9477 AACCCT-
1 AACCCTA
9483 AA-CCTA
1 AACCCTA
9489 AACCCTA
1 AACCCTA
9496 AACCCTA
1 AACCCTA
9503 AACCCTA
1 AACCCTA
9510 AACCCTA
1 AACCCTA
9517 AACCCTA
1 AACCCTA
9524 AACCCTA
1 AACCCTA
9531 AACCCT-
1 AACCCTA
9537 AACCCTA
1 AACCCTA
*
9544 AACCCGA
1 AACCCTA
9551 AACCCTA
1 AACCCTA
9558 AA-CCTA
1 AACCCTA
9564 AACCCTA
1 AACCCTA
9571 AACCCTA
1 AACCCTA
9578 AACCCTA
1 AACCCTA
9585 AACCCTA
1 AACCCTA
9592 AACCCTA
1 AACCCTA
9599 AACCCTA
1 AACCCTA
9606 AA-CCT-
1 AACCCTA
9611 AACCCTA
1 AACCCTA
9618 AACCC-A
1 AACCCTA
9624 AA-CCTA
1 AACCCTA
9630 AACCCTA
1 AACCCTA
9637 AA-CCTA
1 AACCCTA
9643 AACCCTA
1 AACCCTA
9650 AACCCTA
1 AACCCTA
9657 AACCCTA
1 AACCCTA
9664 AACCCTA
1 AACCCTA
9671 AACCCTA
1 AACCCTA
9678 AACCCTA
1 AACCCTA
9685 AACCCTA
1 AACCCTA
*
9692 AACCC-C
1 AACCCTA
9698 AACCCTA
1 AACCCTA
*
9705 AACCCGA
1 AACCCTA
*
9712 AA---AA
1 AACCCTA
9716 AACCCT-
1 AACCCTA
9722 AACCCT-
1 AACCCTA
9728 AACCC--
1 AACCCTA
9733 AACCCTA
1 AACCCTA
*
9740 AAACCTA
1 AACCCTA
9747 AACCCTA
1 AACCCTA
9754 AACCCTA
1 AACCCTA
9761 AACCCTA
1 AACCCTA
9768 AACCCTA
1 AACCCTA
9775 AACCCTA
1 AACCCTA
9782 AACCC-A
1 AACCCTA
9788 AACCCTA
1 AACCCTA
9795 AACCCTA
1 AACCCTA
9802 AACCCTA
1 AACCCTA
9809 AACCCTA
1 AACCCTA
9816 AACCCTA
1 AACCCTA
9823 AACCCTA
1 AACCCTA
9830 AACCCTA
1 AACCCTA
9837 AACCCTA
1 AACCCTA
9844 AACCCCCT-
1 AA--CCCTA
9852 AACCCTA
1 AACCCTA
9859 AACCCTA
1 AACCCTA
9866 AACCCT-
1 AACCCTA
9872 AACCCTA
1 AACCCTA
9879 AACCCTA
1 AACCCTA
9886 AA-CCTA
1 AACCCTA
9892 AACCCTA
1 AACCCTA
9899 AACCCTA
1 AACCCTA
9906 AACCCTA
1 AACCCTA
9913 AACCCTA
1 AACCCTA
9920 AACCCT-
1 AACCCTA
9926 AACCCT-
1 AACCCTA
9932 AACCCTA
1 AACCCTA
9939 AACCCTA
1 AACCCTA
9946 AACCCTA
1 AACCCTA
9953 AACCCTA
1 AACCCTA
9960 AA-CCT-
1 AACCCTA
9965 AACCCTA
1 AACCCTA
9972 AACCCTA
1 AACCCTA
9979 AACCCTA
1 AACCCTA
9986 AACCCTA
1 AACCCTA
9993 AACCCTA
1 AACCCTA
10000 AACCCTA
1 AACCCTA
10007 AACCCT-
1 AACCCTA
10013 AACCCTA
1 AACCCTA
10020 AACCCTA
1 AACCCTA
10027 AACCCTA
1 AACCCTA
10034 AACCCTA
1 AACCCTA
10041 AACCCTA
1 AACCCTA
10048 AACCCT-
1 AACCCTA
10054 AACCCTA
1 AACCCTA
10061 AACCCTA
1 AACCCTA
10068 AACCCTA
1 AACCCTA
10075 AACCCTA
1 AACCCTA
10082 AACCCTA
1 AACCCTA
10089 AACCCTA
1 AACCCTA
10096 AACCCTA
1 AACCCTA
10103 AACCCTA
1 AACCCTA
10110 AACCCT-
1 AACCCTA
10116 AA-CCTA
1 AACCCTA
10122 AACCCT-
1 AACCCTA
10128 AACCCTA
1 AACCCTA
10135 AACCCTA
1 AACCCTA
10142 AACCCTA
1 AACCCTA
10149 AACCCTA
1 AACCCTA
10156 AACCCTA
1 AACCCTA
10163 AACCCTA
1 AACCCTA
10170 AACCCT-
1 AACCCTA
10176 AA-CCT-
1 AACCCTA
10181 AACCCTA
1 AACCCTA
10188 AACCCTA
1 AACCCTA
10195 AACCCTA
1 AACCCTA
10202 AACCCTA
1 AACCCTA
10209 AACCCTA
1 AACCCTA
10216 AACCCTA
1 AACCCTA
10223 AA--CTA
1 AACCCTA
10228 AACCCTA
1 AACCCTA
10235 AACCCTA
1 AACCCTA
10242 AACCCTA
1 AACCCTA
10249 AACCCTA
1 AACCCTA
10256 AACCCTA
1 AACCCTA
10263 AA-CCTA
1 AACCCTA
10269 AACCCTA
1 AACCCTA
10276 AACCCT-
1 AACCCTA
10282 AACCCTA
1 AACCCTA
10289 AACCCTA
1 AACCCTA
10296 AACCCTA
1 AACCCTA
10303 AACCCTA
1 AACCCTA
10310 AACCCTA
1 AACCCTA
10317 AACCCTA
1 AACCCTA
10324 AACCCTAA
1 AACCCT-A
10332 AACCCTA
1 AACCCTA
10339 AACCCTA
1 AACCCTA
10346 AACCCTA
1 AACCCTA
10353 AA-CCTA
1 AACCCTA
10359 AACCCTA
1 AACCCTA
10366 AACCCTA
1 AACCCTA
10373 AACCCTA
1 AACCCTA
10380 AACCCTA
1 AACCCTA
10387 AACCCTA
1 AACCCTA
10394 AACCCTA
1 AACCCTA
10401 AACCCTA
1 AACCCTA
*
10408 AACCC-C
1 AACCCTA
10414 AACCCTA
1 AACCCTA
10421 AACCCTA
1 AACCCTA
10428 AACCCTA
1 AACCCTA
10435 AACCCTA
1 AACCCTA
10442 AACCCTA
1 AACCCTA
10449 AACCC-A
1 AACCCTA
10455 AACCCTA
1 AACCCTA
*
10462 AACCC-C
1 AACCCTA
10468 AACCCTA
1 AACCCTA
10475 AACCC-A
1 AACCCTA
*
10481 AACCCCA
1 AACCCTA
10488 AACCCTA
1 AACCCTA
10495 AACCC-A
1 AACCCTA
*
10501 AACCCCA
1 AACCCTA
*
10508 AACCC-C
1 AACCCTA
*
10514 AACCCCA
1 AACCCTA
*
10521 AACCCCA
1 AACCCTA
10528 AACCC-A
1 AACCCTA
*
10534 AACCCCA
1 AACCCTA
*
10541 AACCCCA
1 AACCCTA
10548 AACCC-A
1 AACCCTA
*
10554 AACCCCA
1 AACCCTA
*
10561 AACCC-C
1 AACCCTA
10567 AACCC-A
1 AACCCTA
*
10573 AACCCCAA
1 AA-CCCTA
*
10581 AACCCCA
1 AACCCTA
*
10588 AACCCCA
1 AACCCTA
*
10595 AACCCCA
1 AACCCTA
*
10602 AACCCCA
1 AACCCTA
10609 AA-CC-A
1 AACCCTA
*
10614 AACCCCA
1 AACCCTA
*
10621 AACCCCA
1 AACCCTA
10628 AACCC-A
1 AACCCTA
*
10634 AACCCCA
1 AACCCTA
10641 AACCC-A
1 AACCCTA
*
10647 AA-CCAA
1 AACCCTA
*
10653 AACCCCA
1 AACCCTA
10660 AACCC-A
1 AACCCTA
*
10666 AACCCCA
1 AACCCTA
*
10673 AACCC-C
1 AACCCTA
*
10679 AACCCCA
1 AACCCTA
10686 AACCC--
1 AACCCTA
10691 AACCC-A
1 AACCCTA
10697 AACCC-A
1 AACCCTA
*
10703 AACCCAA
1 AACCCTA
*
10710 AACCCCA
1 AACCCTA
*
10717 AACCCCA
1 AACCCTA
10724 AACCC-A
1 AACCCTA
10730 AACCC--
1 AACCCTA
**
10735 AACCCCG
1 AACCCTA
*
10742 AACCCCA
1 AACCCTA
10749 AACCC-A
1 AACCCTA
*
10755 AACCCCA
1 AACCCTA
*
10762 AACCC-G
1 AACCCTA
*
10768 AACCCCA
1 AACCCTA
**
10775 AACCCCC
1 AACCCTA
*
10782 AACCCCA
1 AACCCTA
10789 AACCC
1 AACCC
10794 GAACCCCGAA
Statistics
Matches: 10219, Mismatches: 110, Indels: 912
0.91 0.01 0.08
Matches are distributed among these distances:
4 27 0.00
5 257 0.03
6 1713 0.17
7 7927 0.78
8 208 0.02
9 67 0.01
10 20 0.00
ACGTcount: A:0.42, C:0.44, G:0.00, T:0.13
Consensus pattern (7 bp):
AACCCTA
Found at i:10801 original size:7 final size:7
Alignment explanation
Indices: 10501--12172 Score: 2334
Period size: 7 Copynumber: 248.9 Consensus size: 7
10491 CCTAAACCCA
*
10501 AACCCCA
1 AACCCCG
10508 AACCCC-
1 AACCCCG
*
10514 AACCCCA
1 AACCCCG
10521 AACCCC-
1 AACCCCG
* *
10527 AAACCCA
1 AACCCCG
*
10534 AACCCCA
1 AACCCCG
10541 AACCCC-
1 AACCCCG
* *
10547 AAACCCA
1 AACCCCG
*
10554 AACCCCA
1 AACCCCG
10561 AACCCC-
1 AACCCCG
*
10567 AA-CCCA
1 AACCCCG
*
10573 AACCCCAA
1 AACCCC-G
*
10581 AACCCCA
1 AACCCCG
*
10588 AACCCCA
1 AACCCCG
*
10595 AACCCCA
1 AACCCCG
10602 AACCCC-
1 AACCCCG
* *
10608 AA-ACCA
1 AACCCCG
*
10614 AACCCCA
1 AACCCCG
10621 AACCCC-
1 AACCCCG
* *
10627 AAACCCA
1 AACCCCG
10634 AACCCC-
1 AACCCCG
*
10640 AAACCC-
1 AACCCCG
* **
10646 AAACCAA
1 AACCCCG
10653 AACCCC-
1 AACCCCG
* *
10659 AAACCCA
1 AACCCCG
*
10666 AACCCCA
1 AACCCCG
10673 AACCCC-
1 AACCCCG
10679 AACCCC-
1 AACCCCG
*
10685 AAACCC-
1 AACCCCG
10691 AA-CCC-
1 AACCCCG
* *
10696 AAACCCA
1 AACCCCG
**
10703 AACCCAA
1 AACCCCG
*
10710 AACCCCA
1 AACCCCG
10717 AACCCC-
1 AACCCCG
*
10723 AAACCC-
1 AACCCCG
*
10729 AAACCC-
1 AACCCCG
10735 AACCCCG
1 AACCCCG
10742 AACCCC-
1 AACCCCG
* *
10748 AAACCCA
1 AACCCCG
10755 AACCCC-
1 AACCCCG
*
10761 AAACCCG
1 AACCCCG
*
10768 AACCCCA
1 AACCCCG
*
10775 AACCCCC
1 AACCCCG
10782 AACCCC-
1 AACCCCG
*
10788 AAACCCG
1 AACCCCG
10795 AACCCCG
1 AACCCCG
10802 AA-CCCG
1 AACCCCG
10808 AA-CCCG
1 AACCCCG
10814 AA-CCCG
1 AACCCCG
10820 AA-CCCG
1 AACCCCG
10826 AA-CCCG
1 AACCCCG
10832 AACCCCG
1 AACCCCG
10839 AA-CCCG
1 AACCCCG
10845 AA-CCCG
1 AACCCCG
10851 AACCCCG
1 AACCCCG
10858 AA-CCCG
1 AACCCCG
*
10864 AAACCCG
1 AACCCCG
10871 AACCCCG
1 AACCCCG
10878 AACCCCG
1 AACCCCG
10885 AA-CCCG
1 AACCCCG
10891 AA-CCCG
1 AACCCCG
10897 AACCCCG
1 AACCCCG
10904 AACCCCG
1 AACCCCG
10911 AACCCCG
1 AACCCCG
10918 AACCCCG
1 AACCCCG
10925 AA-CCCG
1 AACCCCG
10931 AA-CCCG
1 AACCCCG
10937 AACCCCG
1 AACCCCG
10944 AACCCCG
1 AACCCCG
10951 AA-CCCG
1 AACCCCG
10957 AACCCCG
1 AACCCCG
10964 AA--CCG
1 AACCCCG
10969 AA-CCCG
1 AACCCCG
10975 AACCCCG
1 AACCCCG
10982 AACCCCG
1 AACCCCG
10989 AACCCCG
1 AACCCCG
10996 AACCCCG
1 AACCCCG
11003 AACCCCG
1 AACCCCG
11010 AA-CCCG
1 AACCCCG
11016 AACCCCG
1 AACCCCG
11023 AACCCCG
1 AACCCCG
11030 AACCCCG
1 AACCCCG
11037 AACCCCG
1 AACCCCG
11044 AACCCCCCCG
1 AA---CCCCG
11054 AA-CCCG
1 AACCCCG
11060 AACCCCG
1 AACCCCG
11067 AACCCCG
1 AACCCCG
11074 AACCCCG
1 AACCCCG
11081 --CCCCG
1 AACCCCG
11086 AACCCCG
1 AACCCCG
11093 AA-CCCG
1 AACCCCG
11099 AACCCCG
1 AACCCCG
11106 AA-CCCG
1 AACCCCG
11112 AACCCCG
1 AACCCCG
11119 AACCCCG
1 AACCCCG
11126 AACCCCG
1 AACCCCG
11133 AACCCCG
1 AACCCCG
11140 AACCCCG
1 AACCCCG
11147 AACCCCG
1 AACCCCG
11154 AACCCCG
1 AACCCCG
11161 AACCCCG
1 AACCCCG
11168 AACCCCG
1 AACCCCG
11175 AA-CCCG
1 AACCCCG
11181 AACCCCG
1 AACCCCG
11188 AACCCCG
1 AACCCCG
11195 AACCCCG
1 AACCCCG
11202 AACCCCG
1 AACCCCG
11209 AACCCCG
1 AACCCCG
11216 AACCCCG
1 AACCCCG
11223 AACCCCG
1 AACCCCG
11230 AACCCCG
1 AACCCCG
11237 AACCCCG
1 AACCCCG
11244 AACCCCG
1 AACCCCG
11251 AA-CCCG
1 AACCCCG
11257 AACCCCG
1 AACCCCG
11264 AACCCCG
1 AACCCCG
11271 AACCCCG
1 AACCCCG
11278 AACCCCG
1 AACCCCG
11285 AACCCCG
1 AACCCCG
11292 AACCCCG
1 AACCCCG
11299 AACCCCG
1 AACCCCG
11306 AACCCCG
1 AACCCCG
11313 AA-CCCG
1 AACCCCG
11319 AA-CCCG
1 AACCCCG
11325 AACCCCG
1 AACCCCG
11332 AA-CCCG
1 AACCCCG
11338 AACCCCG
1 AACCCCG
11345 AACCCCG
1 AACCCCG
11352 AACCCCG
1 AACCCCG
11359 AACCCCG
1 AACCCCG
11366 AACCCCG
1 AACCCCG
11373 AACCCCG
1 AACCCCG
11380 AACCCCG
1 AACCCCG
11387 AACCCCG
1 AACCCCG
11394 AACCCCG
1 AACCCCG
11401 AACCCCG
1 AACCCCG
11408 AA-CCCG
1 AACCCCG
11414 AACGAACCCG
1 AAC---CCCG
11424 AACCCCG
1 AACCCCG
11431 AACCCCG
1 AACCCCG
11438 AA-CCCG
1 AACCCCG
11444 AA-CCCG
1 AACCCCG
11450 AACCCCG
1 AACCCCG
11457 AACCCCG
1 AACCCCG
11464 AACCCCCG
1 AA-CCCCG
11472 AACCCCG
1 AACCCCG
11479 AACCCCG
1 AACCCCG
11486 AA-CCCG
1 AACCCCG
11492 AA-CCCG
1 AACCCCG
11498 AA-CCCG
1 AACCCCG
11504 AACCCCG
1 AACCCCG
11511 AA-CCCG
1 AACCCCG
11517 AA-CCCG
1 AACCCCG
11523 AA-CCCG
1 AACCCCG
11529 AACCCCG
1 AACCCCG
11536 AACCCCG
1 AACCCCG
11543 AACCCCCG
1 AA-CCCCG
11551 AACCCCG
1 AACCCCG
11558 AACCCCG
1 AACCCCG
11565 AACCCCG
1 AACCCCG
11572 AA-CCCG
1 AACCCCG
11578 AACCCCG
1 AACCCCG
11585 AA-CCCG
1 AACCCCG
11591 AA-CCCG
1 AACCCCG
11597 AACCCCG
1 AACCCCG
11604 AA-CCCG
1 AACCCCG
11610 AACCCCG
1 AACCCCG
11617 AACCCCG
1 AACCCCG
11624 AACCCCG
1 AACCCCG
11631 AACCCCCG
1 AA-CCCCG
11639 AA-CCCG
1 AACCCCG
11645 AACCCCG
1 AACCCCG
11652 AACCCCG
1 AACCCCG
11659 AACCCCG
1 AACCCCG
11666 AACCCCG
1 AACCCCG
11673 AACCCCG
1 AACCCCG
11680 AACCCCG
1 AACCCCG
11687 AACCCCG
1 AACCCCG
11694 AACCCCG
1 AACCCCG
11701 AACCCCG
1 AACCCCG
11708 AACCCCG
1 AACCCCG
11715 AA-CCCG
1 AACCCCG
11721 AACCCCG
1 AACCCCG
11728 AACCCCG
1 AACCCCG
11735 AACCCCG
1 AACCCCG
11742 AACCCCG
1 AACCCCG
11749 AACCCCG
1 AACCCCG
11756 AACCCCG
1 AACCCCG
11763 AACCCCG
1 AACCCCG
11770 AACCCCG
1 AACCCCG
11777 AACCCCG
1 AACCCCG
11784 AA-CCCG
1 AACCCCG
11790 AACCCCG
1 AACCCCG
11797 AACCCCG
1 AACCCCG
11804 AA-CCCG
1 AACCCCG
11810 AACCCCG
1 AACCCCG
11817 AACCCCG
1 AACCCCG
11824 AACCCCG
1 AACCCCG
11831 AACCCCG
1 AACCCCG
11838 AA-CCCG
1 AACCCCG
11844 AACCCCG
1 AACCCCG
11851 AACCCCG
1 AACCCCG
11858 AACCCCG
1 AACCCCG
11865 AACCCCG
1 AACCCCG
11872 AACCCCG
1 AACCCCG
11879 AACCCCG
1 AACCCCG
11886 AACCCCG
1 AACCCCG
11893 AA-CCCG
1 AACCCCG
11899 AACCCCG
1 AACCCCG
11906 AACCCCG
1 AACCCCG
11913 AACCCCG
1 AACCCCG
11920 AACCCCG
1 AACCCCG
11927 AACCCCG
1 AACCCCG
11934 AACCCCG
1 AACCCCG
11941 AACCCCG
1 AACCCCG
11948 AACCCCG
1 AACCCCG
11955 AACCCCG
1 AACCCCG
11962 AA-CCCG
1 AACCCCG
11968 AACCCCG
1 AACCCCG
11975 AA-CCCG
1 AACCCCG
11981 AACCCCG
1 AACCCCG
11988 AA-CCCG
1 AACCCCG
11994 AACCCCG
1 AACCCCG
12001 AACCCCG
1 AACCCCG
12008 AACCCCG
1 AACCCCG
12015 AACCCCG
1 AACCCCG
12022 AACCCCG
1 AACCCCG
12029 AACCCCG
1 AACCCCG
12036 AACCCCG
1 AACCCCG
12043 AA-CCCG
1 AACCCCG
12049 AACCCCG
1 AACCCCG
12056 AA-CCCG
1 AACCCCG
12062 AACCCCG
1 AACCCCG
12069 AA-CCCG
1 AACCCCG
12075 AA-CCCG
1 AACCCCG
12081 AACCCCG
1 AACCCCG
12088 AACCCCG
1 AACCCCG
12095 AA-CCCG
1 AACCCCG
12101 AACCCCG
1 AACCCCG
12108 AACCCCG
1 AACCCCG
12115 AACCCCG
1 AACCCCG
12122 AA-CCCG
1 AACCCCG
12128 AACCCCG
1 AACCCCG
12135 AA-CCCG
1 AACCCCG
12141 -ACCCCG
1 AACCCCG
12147 AACCCCG
1 AACCCCG
12154 AACCCC-
1 AACCCCG
12160 AACCCCG
1 AACCCCG
12167 AACCCC
1 AACCCC
12173 AGTAACTCTA
Statistics
Matches: 1568, Mismatches: 29, Indels: 136
0.90 0.02 0.08
Matches are distributed among these distances:
5 21 0.01
6 410 0.26
7 1095 0.70
8 28 0.02
10 14 0.01
ACGTcount: A:0.32, C:0.56, G:0.12, T:0.00
Consensus pattern (7 bp):
AACCCCG
Found at i:12207 original size:10 final size:10
Alignment explanation
Indices: 12192--13214 Score: 343
Period size: 10 Copynumber: 103.1 Consensus size: 10
12182 ATAACTCTAG
12192 TAAACCCTTA
1 TAAACCCTTA
12202 TAAA-CC-T-
1 TAAACCCTTA
* *
12209 TAAATCTTTA
1 TAAACCCTTA
12219 T-AACCCTTAA
1 TAAACCCTT-A
*
12229 TAACCCCTTA
1 TAAACCCTTA
*
12239 TAAACCCTAA
1 TAAACCCTTA
*
12249 TAAACCATTA
1 TAAACCCTTA
* *
12259 TAAACACTAA
1 TAAACCCTTA
**
12269 TAAACCCTGG
1 TAAACCCTTA
*
12279 TAAGCCC-TA
1 TAAACCCTTA
*
12288 CTAAA-CCTTT
1 -TAAACCCTTA
*
12298 TAAAACCCTAA
1 T-AAACCCTTA
* *
12309 CT-AATCCTAA
1 -TAAACCCTTA
*
12319 TAAACCCTTG
1 TAAACCCTTA
*
12329 CAAACCC-TA
1 TAAACCCTTA
12338 GTAAACCC-TA
1 -TAAACCCTTA
* *
12348 GTAAACCTTTG
1 -TAAACCCTTA
* *
12359 TAAACACTAA
1 TAAACCCTTA
12369 TAAACCC-TA
1 TAAACCCTTA
*
12378 GTAAACCCTAA
1 -TAAACCCTTA
* *
12389 TCAACAC-TA
1 TAAACCCTTA
*
12398 GTAAA-GCTTA
1 -TAAACCCTTA
12408 CTAAA-CC-TA
1 -TAAACCCTTA
*
12417 TTAAACCCTAA
1 -TAAACCCTTA
12428 TAAACCCTTA
1 TAAACCCTTA
*
12438 TAAA-CCATA
1 TAAACCCTTA
*
12447 GTAAAGCC-TA
1 -TAAACCCTTA
*
12457 GTAAATCCTTA
1 -TAAACCCTTA
12468 TAAACCC-TA
1 TAAACCCTTA
12477 GTAAACCCTTA
1 -TAAACCCTTA
*
12488 TAAACCCTAA
1 TAAACCCTTA
*
12498 TAACCCCTTA
1 TAAACCCTTA
12508 TAAA-CCTTA
1 TAAACCCTTA
* *
12517 -ACAATTCCTAA
1 TA-AA-CCCTTA
*
12528 CAAA-CCTTA
1 TAAACCCTTA
*
12537 GTAAACCCTTG
1 -TAAACCCTTA
12548 TAAACCC-TA
1 TAAACCCTTA
*
12557 TTAAACCCTAA
1 -TAAACCCTTA
*
12568 TAAATCC-TA
1 TAAACCCTTA
12577 GTAAACCC-TA
1 -TAAACCCTTA
*
12587 GCAAAACCCTTA
1 --TAAACCCTTA
*
12599 -CAACCC-TA
1 TAAACCCTTA
* *
12607 GCAAAATCC-TA
1 --TAAACCCTTA
*
12618 GTAAATCC-TA
1 -TAAACCCTTA
* *
12628 TTAAA-TCGTA
1 -TAAACCCTTA
12638 GTAAACCCTTA
1 -TAAACCCTTA
*
12649 TAAATCC-TA
1 TAAACCCTTA
*
12658 GTATACCC-TA
1 -TAAACCCTTA
12668 GTAAACCC-TA
1 -TAAACCCTTA
*
12678 GTAAACTC-TA
1 -TAAACCCTTA
*
12688 TTAAACCCTAA
1 -TAAACCCTTA
12699 TAAACCCTTA
1 TAAACCCTTA
12709 TAAACCC-TA
1 TAAACCCTTA
*
12718 GTAAACTCTTA
1 -TAAACCCTTA
*
12729 TAAACTC-TA
1 TAAACCCTTA
12738 GTAAACCCTTA
1 -TAAACCCTTA
*
12749 TAAACCCCTAA
1 TAAA-CCCTTA
*
12760 TAAACCCTAA
1 TAAACCCTTA
*
12770 TAAGCCC-TA
1 TAAACCCTTA
* * *
12779 GTAAGCACTAA
1 -TAAACCCTTA
12790 TAAACCC---
1 TAAACCCTTA
*
12797 TAAACCCTAA
1 TAAACCCTTA
12807 TAATA--C-TA
1 TAA-ACCCTTA
12815 CTAAACCCTTA
1 -TAAACCCTTA
12826 TAAA-CCTTA
1 TAAACCCTTA
12835 TTAAACCC-TA
1 -TAAACCCTTA
*
12845 GTGAACCCTTA
1 -TAAACCCTTA
*
12856 TAAACTCTTA
1 TAAACCCTTA
12866 TAAA-CCTTA
1 TAAACCCTTA
*
12875 GTAAACCTTTA
1 -TAAACCCTTA
*
12886 TAAACCCTAA
1 TAAACCCTTA
*
12896 TAAACTC-TA
1 TAAACCCTTA
12905 GTAAA-CCTTA
1 -TAAACCCTTA
*
12915 TTAAACCCTAA
1 -TAAACCCTTA
*
12926 TACACCC-TA
1 TAAACCCTTA
*
12935 GTACA-CCTTAA
1 -TAAACCCTT-A
*
12946 TAAACCCTTG
1 TAAACCCTTA
12956 TAAACCC-TA
1 TAAACCCTTA
*
12965 GTAAATCC-TA
1 -TAAACCCTTA
* *
12975 GTAAACACTAA
1 -TAAACCCTTA
* * *
12986 TACACCTTTG
1 TAAACCCTTA
*
12996 TAAA-CATTGA
1 TAAACCCTT-A
13006 TAAA-CCTTAA
1 TAAACCCTT-A
* *
13016 TAATCAC-TA
1 TAAACCCTTA
* *
13025 GTAAACACTAA
1 -TAAACCCTTA
*
13036 TAAA-CCTTT
1 TAAACCCTTA
* *
13045 TTAACCCTAA
1 TAAACCCTTA
13055 TAAACCCTTA
1 TAAACCCTTA
*
13065 TAAACCCTGA
1 TAAACCCTTA
*
13075 TAAACTCTTA
1 TAAACCCTTA
*
13085 TAAACCCTTG
1 TAAACCCTTA
13095 TAAACCC-TA
1 TAAACCCTTA
13104 GTAAA-CCTTAA
1 -TAAACCCTT-A
*
13115 TAGACCC-TA
1 TAAACCCTTA
*
13124 GTAAACCCTAA
1 -TAAACCCTTA
13135 TAAACCC-TA
1 TAAACCCTTA
*
13144 GTAAACCCTTG
1 -TAAACCCTTA
*
13155 TAAATCC-TA
1 TAAACCCTTA
13164 GTAAACCCTTA
1 -TAAACCCTTA
13175 TAAA-CCTTAA
1 TAAACCCTT-A
13185 TAAACCC-TA
1 TAAACCCTTA
*
13194 GTAAACCCTTG
1 -TAAACCCTTA
13205 T-AACCCTTA
1 TAAACCCTTA
13214 T
1 T
13215 TAAAGCCTAA
Statistics
Matches: 769, Mismatches: 154, Indels: 181
0.70 0.14 0.16
Matches are distributed among these distances:
7 11 0.01
8 7 0.01
9 101 0.13
10 554 0.72
11 92 0.12
12 4 0.01
ACGTcount: A:0.41, C:0.27, G:0.05, T:0.27
Consensus pattern (10 bp):
TAAACCCTTA
Found at i:12241 original size:20 final size:19
Alignment explanation
Indices: 12181--12274 Score: 66
Period size: 20 Copynumber: 4.9 Consensus size: 19
12171 CCAGTAACTC
* * *
12181 TATAACTCTAGTAAACCCT
1 TATAACCCTAATAAACCAT
* * *
12200 TATAAACCT--TAAATCTT
1 TATAACCCTAATAAACCAT
* *
12217 TATAACCCTTAATAACCCCT
1 TATAACCC-TAATAAACCAT
12237 TATAAACCCTAATAAACCAT
1 TAT-AACCCTAATAAACCAT
*
12257 TATAAACACTAATAAACC
1 TAT-AACCCTAATAAACC
12275 CTGGTAAGCC
Statistics
Matches: 60, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
17 13 0.22
18 1 0.02
19 7 0.12
20 34 0.57
21 5 0.08
ACGTcount: A:0.44, C:0.26, G:0.01, T:0.30
Consensus pattern (19 bp):
TATAACCCTAATAAACCAT
Found at i:12337 original size:20 final size:20
Alignment explanation
Indices: 12314--13240 Score: 525
Period size: 20 Copynumber: 46.5 Consensus size: 20
12304 CCTAACTAAT
* **
12314 CCTAATAAACCCTTGCAAAC
1 CCTAGTAAACCCTTATAAAC
12334 CCTAGTAAACCC-TAGTAAAC
1 CCTAGTAAACCCTTA-TAAAC
* * * *
12354 CTTTGTAAACACTAATAAAC
1 CCTAGTAAACCCTTATAAAC
* *
12374 CCTAGTAAACCCTAATCAAC
1 CCTAGTAAACCCTTATAAAC
* *
12394 ACTAGTAAA-GCTTACTAAA-
1 CCTAGTAAACCCTTA-TAAAC
* *
12413 CCTATTAAACCCTAATAAAC
1 CCTAGTAAACCCTTATAAAC
* *
12433 CCTTA-TAAA-CCATAGTAAAG
1 CC-TAGTAAACCCTTA-TAAAC
*
12453 CCTAGTAAATCCTTATAAAC
1 CCTAGTAAACCCTTATAAAC
12473 CCTAGTAAACCCTTATAAAC
1 CCTAGTAAACCCTTATAAAC
* *
12493 CCTAATAACCCCTTATAAAC
1 CCTAGTAAACCCTTATAAAC
* ** ** * *
12513 CTTAACAATTCCTAACAAAC
1 CCTAGTAAACCCTTATAAAC
* *
12533 CTTAGTAAACCCTTGTAAAC
1 CCTAGTAAACCCTTATAAAC
* * *
12553 CCTATTAAACCCTAATAAAT
1 CCTAGTAAACCCTTATAAAC
*
12573 CCTAGTAAACCC-TAGCAAAAC
1 CCTAGTAAACCCTTA--TAAAC
* *
12594 CCT--TACAACCC-TAGCAAAAT
1 CCTAGTA-AACCCTTA--TAAAC
* *
12614 CCTAGTAAATCC-TATTAAAT
1 CCTAGTAAACCCTTA-TAAAC
* *
12634 CGTAGTAAACCCTTATAAAT
1 CCTAGTAAACCCTTATAAAC
*
12654 CCTAGTATACCC-TAGTAAAC
1 CCTAGTAAACCCTTA-TAAAC
*
12674 CCTAGTAAACTC-TATTAAAC
1 CCTAGTAAACCCTTA-TAAAC
*
12694 CCTAATAAACCCTTATAAAC
1 CCTAGTAAACCCTTATAAAC
*
12714 CCTAGTAAACTCTTATAAAC
1 CCTAGTAAACCCTTATAAAC
*
12734 TCTAGTAAACCCTTATAAACC
1 CCTAGTAAACCCTTATAAA-C
* * *
12755 CCTAATAAACCCTAATAAGC
1 CCTAGTAAACCCTTATAAAC
* * *
12775 CCTAGTAAGCACTAATAAAC
1 CCTAGTAAACCCTTATAAAC
*
12795 CC---TAAACCCTAATAATA-
1 CCTAGTAAACCCTTATAA-AC
*
12812 -CTACTAAACCCTTATAAAC
1 CCTAGTAAACCCTTATAAAC
* * *
12831 CTTATTAAACCC-TAGTGAAC
1 CCTAGTAAACCCTTA-TAAAC
*
12851 CCTTA-TAAACTCTTATAAAC
1 CC-TAGTAAACCCTTATAAAC
* *
12871 CTTAGTAAACCTTTATAAAC
1 CCTAGTAAACCCTTATAAAC
* *
12891 CCTAATAAACTC-TAGTAAAC
1 CCTAGTAAACCCTTA-TAAAC
* * * *
12911 CTTATTAAACCCTAATACAC
1 CCTAGTAAACCCTTATAAAC
*
12931 CCTAGTACA-CCTTAATAAAC
1 CCTAGTAAACCCTT-ATAAAC
* *
12951 CCTTGTAAACCC-TAGTAAAT
1 CCTAGTAAACCCTTA-TAAAC
* * *
12971 CCTAGTAAACACTAATACAC
1 CCTAGTAAACCCTTATAAAC
* * *
12991 CTTTGTAAA-CATTGATAAAC
1 CCTAGTAAACCCTT-ATAAAC
* * * *
13011 CTTAATAATCAC-TAGTAAAC
1 CCTAGTAAACCCTTA-TAAAC
* * * *
13031 ACTAATAAA-CCTTTTTAAC
1 CCTAGTAAACCCTTATAAAC
*
13050 CCTAATAAACCCTTATAAAC
1 CCTAGTAAACCCTTATAAAC
*
13070 CCT-GATAAACTCTTATAAAC
1 CCTAG-TAAACCCTTATAAAC
*
13090 CCTTGTAAACCC-TAGTAAAC
1 CCTAGTAAACCCTTA-TAAAC
* * *
13110 CTTAATAGACCC-TAGTAAAC
1 CCTAGTAAACCCTTA-TAAAC
*
13130 CCTAATAAACCC-TAGTAAAC
1 CCTAGTAAACCCTTA-TAAAC
* *
13150 CCTTGTAAATCC-TAGTAAAC
1 CCTAGTAAACCCTTA-TAAAC
13170 CCTTA-TAAA-CCTTAATAAAC
1 CC-TAGTAAACCCTT-ATAAAC
*
13190 CCTAGTAAACCCTTGT-AAC
1 CCTAGTAAACCCTTATAAAC
* * * *
13209 CCTTATTAAAGCCTAATAACC
1 CC-TAGTAAACCCTTATAAAC
13230 CCTAGTAAACC
1 CCTAGTAAACC
13241 ATAACCCCAA
Statistics
Matches: 708, Mismatches: 150, Indels: 98
0.74 0.16 0.10
Matches are distributed among these distances:
16 1 0.00
17 11 0.02
18 2 0.00
19 73 0.10
20 561 0.79
21 58 0.08
22 2 0.00
ACGTcount: A:0.41, C:0.27, G:0.05, T:0.27
Consensus pattern (20 bp):
CCTAGTAAACCCTTATAAAC
Found at i:20263 original size:15 final size:17
Alignment explanation
Indices: 20243--20275 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
20233 ATTAATTACG
20243 ATTTT-ATG-TAAAAAT
1 ATTTTAATGATAAAAAT
20258 ATTTTAATGATAAAAAT
1 ATTTTAATGATAAAAAT
20275 A
1 A
20276 AAAAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 3 0.19
17 8 0.50
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (17 bp):
ATTTTAATGATAAAAAT
Found at i:20979 original size:6 final size:6
Alignment explanation
Indices: 20968--20993 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
20958 TCGTAACCTG
20968 GAGGAA GAGGAA GAGGAA GAGGAA GA
1 GAGGAA GAGGAA GAGGAA GAGGAA GA
20994 AGAAATGAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (6 bp):
GAGGAA
Found at i:22076 original size:37 final size:36
Alignment explanation
Indices: 22034--22136 Score: 172
Period size: 35 Copynumber: 2.9 Consensus size: 36
22024 ATATTTCAAC
*
22034 AAACATCTACCAAACTTTGAAAAACCATTTTTCAAAG
1 AAACATTTACCAAACTTTG-AAAACCATTTTTCAAAG
22071 AAACATTTACCAAACTTTGAAAACCA-TTTTCAAAG
1 AAACATTTACCAAACTTTGAAAACCATTTTTCAAAG
*
22106 AAACATTTACCAAACTTTGAAAACCTTTTTT
1 AAACATTTACCAAACTTTGAAAACCATTTTT
22137 TTCAAAGTTG
Statistics
Matches: 63, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
35 34 0.54
36 11 0.17
37 18 0.29
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (36 bp):
AAACATTTACCAAACTTTGAAAACCATTTTTCAAAG
Found at i:25457 original size:16 final size:16
Alignment explanation
Indices: 25436--25468 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
25426 AAAATCTTTC
*
25436 TTTCCCGTTCTTGATT
1 TTTCCCGTTCTGGATT
25452 TTTCCCGTTCTGGATT
1 TTTCCCGTTCTGGATT
25468 T
1 T
25469 CGATCTACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.24, G:0.15, T:0.55
Consensus pattern (16 bp):
TTTCCCGTTCTGGATT
Found at i:26683 original size:37 final size:36
Alignment explanation
Indices: 26641--26749 Score: 166
Period size: 35 Copynumber: 3.0 Consensus size: 36
26631 ATATTTCAAC
*
26641 AAACATCTACCAAACTTTGAAAAACCATTTTTCAAAG
1 AAACATTTACCAAACTTTG-AAAACCATTTTTCAAAG
**
26678 AAACATTTATTAAACTTTGAAAACCA-TTTTCAAAG
1 AAACATTTACCAAACTTTGAAAACCATTTTTCAAAG
26713 AAACATTTACCAAACTTTGAAAACCATTTTTTCAAAG
1 AAACATTTACCAAACTTTGAAAACCA-TTTTTCAAAG
26750 TTGGTTGCCA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
35 33 0.51
36 7 0.11
37 25 0.38
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.31
Consensus pattern (36 bp):
AAACATTTACCAAACTTTGAAAACCATTTTTCAAAG
Found at i:30563 original size:17 final size:17
Alignment explanation
Indices: 30541--30575 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
30531 TTGTTTTTGT
*
30541 TCGCTTTATTCATAAGC
1 TCGCTTTATTAATAAGC
30558 TCGCTTTATTAATAAGC
1 TCGCTTTATTAATAAGC
30575 T
1 T
30576 TTTTATTGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.20, G:0.11, T:0.43
Consensus pattern (17 bp):
TCGCTTTATTAATAAGC
Found at i:38755 original size:23 final size:21
Alignment explanation
Indices: 38705--38767 Score: 81
Period size: 21 Copynumber: 2.9 Consensus size: 21
38695 TTTTGGTGCA
* *
38705 GAGGGAATCGATCCCCCCCTT
1 GAGGGAACCGATTCCCCCCTT
*
38726 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCCTT
38747 GAAGAGGAACCGATTCCCCCC
1 G-AG-GGAACCGATTCCCCCC
38768 ACAGGGGAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
21 19 0.53
22 2 0.06
23 15 0.42
ACGTcount: A:0.22, C:0.37, G:0.24, T:0.17
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCCTT
Found at i:42261 original size:65 final size:65
Alignment explanation
Indices: 42180--42324 Score: 272
Period size: 65 Copynumber: 2.2 Consensus size: 65
42170 AAATAGCCTT
*
42180 AGTGCATCGATACATGGCTTGTGCATCGGTGCATTGAATGCATTCGATGTTTCTATTTGTTCAAG
1 AGTGCATCGATGCATGGCTTGTGCATCGGTGCATTGAATGCATTCGATGTTTCTATTTGTTCAAG
*
42245 AGTGCATCGATGCATGGCTTGTGCATCGGTGCATTGAATGCATTTGATGTTTCTATTTGTTCAAG
1 AGTGCATCGATGCATGGCTTGTGCATCGGTGCATTGAATGCATTCGATGTTTCTATTTGTTCAAG
42310 AGTGCATCGATGCAT
1 AGTGCATCGATGCAT
42325 AGAGAGTGCA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
65 78 1.00
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.37
Consensus pattern (65 bp):
AGTGCATCGATGCATGGCTTGTGCATCGGTGCATTGAATGCATTCGATGTTTCTATTTGTTCAAG
Found at i:42334 original size:65 final size:65
Alignment explanation
Indices: 42200--42339 Score: 235
Period size: 65 Copynumber: 2.2 Consensus size: 65
42190 TACATGGCTT
* ***
42200 GTGCATCGGTGCATTGAATGCATTCGATGTTTCTATTTGTTCAAGAGTGCATCGATGCATGGCTT
1 GTGCATCGGTGCATTGAATGCATTCGATGTTTCTATTTGTTCAAGAGTGCATCGATGCATAGAGA
*
42265 GTGCATCGGTGCATTGAATGCATTTGATGTTTCTATTTGTTCAAGAGTGCATCGATGCATAGAGA
1 GTGCATCGGTGCATTGAATGCATTCGATGTTTCTATTTGTTCAAGAGTGCATCGATGCATAGAGA
42330 GTGCATCGGT
1 GTGCATCGGT
42340 ACACTAAATT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 70 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.36
Consensus pattern (65 bp):
GTGCATCGGTGCATTGAATGCATTCGATGTTTCTATTTGTTCAAGAGTGCATCGATGCATAGAGA
Found at i:44684 original size:21 final size:21
Alignment explanation
Indices: 44660--44723 Score: 58
Period size: 24 Copynumber: 2.9 Consensus size: 21
44650 TCGGTGCATC
44660 TTCATGATGTATCGATGCACA
1 TTCATGATGTATCGATGCACA
* * *
44681 TTCAAAGGGATGCATCGATGCACT
1 TTC--A-TGATGTATCGATGCACA
44705 TTCAT-AGTGTATCGATGCA
1 TTCATGA-TGTATCGATGCA
44724 TTATGCACAA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
20 1 0.03
21 14 0.41
22 1 0.03
23 1 0.03
24 17 0.50
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (21 bp):
TTCATGATGTATCGATGCACA
Found at i:44716 original size:45 final size:41
Alignment explanation
Indices: 44600--44723 Score: 131
Period size: 45 Copynumber: 2.8 Consensus size: 41
44590 AAAACCTGAC
** * *
44600 GGATGCATCGATGCATGGCAGTGTGCATCGATGTACATTCAA
1 GGATGCATCGATGCATTTCA-TGTGTATCGATGCACATTCAA
*
44642 GGAGTGCATCGGTGCATCTTCATGATGTATCGATGCACATTCAAA
1 GGA-TGCATCGATGCAT-TTCATG-TGTATCGATGCACATTC-AA
44687 GGGATGCATCGATGCACTTTCATAGTGTATCGATGCA
1 -GGATGCATCGATGCA-TTTCAT-GTGTATCGATGCA
44724 TTATGCACAA
Statistics
Matches: 69, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
42 3 0.04
43 14 0.20
44 17 0.25
45 30 0.43
46 5 0.07
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (41 bp):
GGATGCATCGATGCATTTCATGTGTATCGATGCACATTCAA
Found at i:48525 original size:22 final size:21
Alignment explanation
Indices: 48483--48522 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
48473 GAGATTATTT
* *
48483 TCATTTTTCTATTTTGAAATA
1 TCATTTTTATATTTTAAAATA
48504 TCATTTTTATATTTTAAAA
1 TCATTTTTATATTTTAAAA
48523 ATAATTTCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (21 bp):
TCATTTTTATATTTTAAAATA
Found at i:48529 original size:20 final size:21
Alignment explanation
Indices: 48485--48529 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
48475 GATTATTTTC
* * *
48485 ATTTTTCTATTTTGAAATATC
1 ATTTTTATATTTTGAAAAATA
48506 ATTTTTATATTTT-AAAAATA
1 ATTTTTATATTTTGAAAAATA
48526 ATTT
1 ATTT
48530 CTCATAATCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (21 bp):
ATTTTTATATTTTGAAAAATA
Found at i:50327 original size:65 final size:66
Alignment explanation
Indices: 50174--50336 Score: 172
Period size: 65 Copynumber: 2.5 Consensus size: 66
50164 AAATAATCTT
* * * * * * * *
50174 AGTGCATCAATGCATGG-CTTGTGCATCAGTGCATTAAATGCATTCGATATTTCTATTTGTTCAA
1 AGTGCATCGATGCATGGACTAGTGCATCGGTACACTAAATGCATTCGATAATTCAATTTATTCAA
50238 G
66 G
* * * *
50239 AGTACATCGATGCATAGA-GAGTGCATCGGTACACTAAATGCATTCGA-AATTCAATTTAATT-G
1 AGTGCATCGATGCATGGACTAGTGCATCGGTACACTAAATGCATTCGATAATTCAATTT-ATTCA
50301 AG
65 AG
*
50303 AGTGCATCGATGCATGGACTAGTGCATAGGTACA
1 AGTGCATCGATGCATGGACTAGTGCATCGGTACA
50337 TCTCTTTGAA
Statistics
Matches: 79, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
64 26 0.33
65 53 0.67
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (66 bp):
AGTGCATCGATGCATGGACTAGTGCATCGGTACACTAAATGCATTCGATAATTCAATTTATTCAA
G
Found at i:52431 original size:32 final size:30
Alignment explanation
Indices: 52390--52477 Score: 117
Period size: 32 Copynumber: 2.9 Consensus size: 30
52380 TAAAAATTTA
52390 GGTACTAAAATGAAACAAAAAGTTAACAATG-G
1 GGTACTAAAATGAAACAAAAAG-T-A-AATGCG
52422 GGTACTAAAATGAAACAAAAAGTAAATGTCG
1 GGTACTAAAATGAAACAAAAAGTAAATG-CG
*
52453 GGTACTAAAATGAAAC-ATAAGTAAA
1 GGTACTAAAATGAAACAAAAAGTAAA
52478 CATTAGGTAT
Statistics
Matches: 53, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
29 4 0.08
30 9 0.17
31 18 0.34
32 22 0.42
ACGTcount: A:0.53, C:0.09, G:0.18, T:0.19
Consensus pattern (30 bp):
GGTACTAAAATGAAACAAAAAGTAAATGCG
Found at i:53803 original size:16 final size:17
Alignment explanation
Indices: 53777--53816 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
53767 ATTTTGTTAG
*
53777 TAATTTATTTAACTATT
1 TAATTTATTTAAATATT
53794 TAATTT-TTTAAATATT
1 TAATTTATTTAAATATT
*
53810 TTATTTA
1 TAATTTA
53817 ATTATTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
TAATTTATTTAAATATT
Found at i:56286 original size:18 final size:17
Alignment explanation
Indices: 56246--56296 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 17
56236 TTACCCGTTA
*
56246 ACCCGACCGTTGACCCCCG
1 ACCCGACCGTTGA--CTCG
56265 ACCCGACCCGTTGACTCG
1 ACCCGA-CCGTTGACTCG
56283 ACCCGACCGTTGAC
1 ACCCGACCGTTGAC
56297 CGTTGACCGG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 8 0.27
18 9 0.30
19 6 0.20
20 7 0.23
ACGTcount: A:0.18, C:0.47, G:0.22, T:0.14
Consensus pattern (17 bp):
ACCCGACCGTTGACTCG
Found at i:56366 original size:29 final size:28
Alignment explanation
Indices: 56305--56482 Score: 121
Period size: 29 Copynumber: 6.3 Consensus size: 28
56295 ACCGTTGACC
*** *
56305 GGTGCTATTCTAGGAATTAATTCGGTTTT
1 GGTGCTATTCT-GGAATTAATTCGAAATG
56334 GGTGCTATTCTGAGAATTAATTCGAAATG
1 GGTGCTATTCTG-GAATTAATTCGAAATG
* * *
56363 GGTGCTATTTTGGTAATT-TTTTGAAA--
1 GGTGCTATTCTGG-AATTAATTCGAAATG
* * * *
56389 AGTGATATTCTGGGAATTAATTCAAAATT
1 GGTGCTATTCT-GGAATTAATTCGAAATG
* *
56418 GGTGC-ATTTTGGAATTAATTCGAAAAG
1 GGTGCTATTCTGGAATTAATTCGAAATG
* * ** *
56445 GGTGCTATTTTGGTAATTATTTTAAAAAG
1 GGTGCTATTCTGG-AATTAATTCGAAATG
56474 GGTGCTATT
1 GGTGCTATT
56483 TGTGTAAAAT
Statistics
Matches: 119, Mismatches: 22, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 12 0.10
27 26 0.22
28 19 0.16
29 62 0.52
ACGTcount: A:0.29, C:0.07, G:0.23, T:0.41
Consensus pattern (28 bp):
GGTGCTATTCTGGAATTAATTCGAAATG
Found at i:56432 original size:27 final size:28
Alignment explanation
Indices: 56334--56483 Score: 130
Period size: 29 Copynumber: 5.4 Consensus size: 28
56324 ATTCGGTTTT
* *
56334 GGTGCTATTCTGAGAATTAATTCGAAATG
1 GGTGCTATTTTG-GAATTAATTCGAAAAG
* *
56363 GGTGCTATTTTGGTAATT-TTTTGAAAA-
1 GGTGCTATTTTGG-AATTAATTCGAAAAG
* * *
56390 -GTGATATTCTGGGAATTAATTC-AAAATT
1 GGTGCTATT-TTGGAATTAATTCGAAAA-G
56418 GGTGC-ATTTTGGAATTAATTCGAAAAG
1 GGTGCTATTTTGGAATTAATTCGAAAAG
* **
56445 GGTGCTATTTTGGTAATTATTTTAAAAAG
1 GGTGCTATTTTGG-AATTAATTCGAAAAG
56474 GGTGCTATTT
1 GGTGCTATTT
56484 GTGTAAAATA
Statistics
Matches: 98, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
26 15 0.15
27 22 0.22
28 21 0.21
29 40 0.41
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.41
Consensus pattern (28 bp):
GGTGCTATTTTGGAATTAATTCGAAAAG
Found at i:59584 original size:33 final size:33
Alignment explanation
Indices: 59544--59618 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 33
59534 TATTCTAACA
59544 TTTATTTT-TTTATTCAAACTAACATCCTAACTT
1 TTTATTTTATTTATTCAAACTAACATCCTAA-TT
* * * **
59577 TTTATTTTATTTGTTCATACTAACCTGTTAATT
1 TTTATTTTATTTATTCAAACTAACATCCTAATT
59610 TTTATTTTA
1 TTTATTTTA
59619 CTTGTTATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
33 19 0.53
34 17 0.47
ACGTcount: A:0.27, C:0.13, G:0.03, T:0.57
Consensus pattern (33 bp):
TTTATTTTATTTATTCAAACTAACATCCTAATT
Found at i:63333 original size:3 final size:3
Alignment explanation
Indices: 63327--63355 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
63317 AAAAAAATTT
63327 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
63356 TTGTAAGTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:70190 original size:165 final size:164
Alignment explanation
Indices: 69905--71441 Score: 1842
Period size: 165 Copynumber: 9.2 Consensus size: 164
69895 TAAAAGACAA
* * *
69905 CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAAC-AAAGACCTTTGAGTTCGACTAT
1 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGACTAC
* * * * *
69969 GCTCACCTCCAAGGCATATCATTTGCAGAATAGCTTAAGTCGAGAAAGGCTATCTGCCAAAGACC
66 GCTCAGCTCCAAGGCACATCATTTGCA-TATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACC
* *
70034 CTCAAGTTTGATTACACTCAGCTTCGAGGGCACAT
130 CTCGAGTTCGATTACACTCAGCTTCGAGGGCACAT
* * *
70069 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATATGTGATCAAAAGACCTTCGAGTTCGACTAC
1 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGACTAC
* * *
70134 GTTCAGCTCCAAGGCACATCATTTGTATCATAACTTAAGTCGAGAAGGGTTATCTGCCAAAGACC
66 GCTCAGCTCCAAGGCACATCATTTGCAT-ATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACC
*
70199 CCCGAGTTCGATTACACTCAGCTTCGAGGGCACAT
130 CTCGAGTTCGATTACACTCAGCTTCGAGGGCACAT
* * * * * *
70234 CATTTACAGCATAACTTAAGTCAATAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
1 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGACTAC
* *
70299 GCTCAGCTCCAAGGCAAATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACC
66 GCTCAGCTCCAAGGCACATCATTTGCA-TATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACC
*
70364 CTCGAGTTCAATTACACTCAGCTTCGAGGGCACAT
130 CTCGAGTTCGATTACACTCAGCTTCGAGGGCACAT
* * *
70399 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATTTGTCACCAAATGACCTTCGAGTTCGACTAC
1 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGACTAC
* * *
70464 GCTCAGCTCCAAGACATATCATTTGCAGTATAGCTTAAGTTGAGAAGGGTTATCTGCCAAAGACC
66 GCTCAGCTCCAAGGCACATCATTTGCA-TATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACC
*
70529 CTCGAGTTCGATTACACTCAGCTTCGAGGACACAT
130 CTCGAGTTCGATTACACTCAGCTTCGAGGGCACAT
* * * **
70564 CATTTACAACATAACTCAAGGCTAGAGGGGTTATCTGTCACCAAAAGACCTTCGAGTTTTACTAC
1 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGACTAC
* * * * * *
70629 GCACAGCTCCAAGGCATATCATTTGTAGTATAACTTAAGTCGAGAAGAGTTATCTGCCAACAAAC
66 GCTCAGCTCCAAGGCACATCATTTGCA-TATAGCTTAAGTCGAGAAGGGTTATCTGCCAA-AGAC
* * * * *
70694 AACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCATAT
129 --CC-TCGAGTTCGATTACACTCAGCTTCGAGGGCACAT
* * ** * * * * * *
70732 CATTTACAACATAACTTAAATCGAGAAGAGTTATATGCCAACCAAAGACCTTCAAGTTCGACTAC
1 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGACTAC
* * *
70797 GCTCAGCTCCAAGGCGCATCATTTACAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACC
66 GCTCAGCTCCAAGGCACATCATTTGCA-TATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACC
* *
70862 CTCGAGTTCGATTACACTCATCTTCAAGGGCACAT
130 CTCGAGTTCGATTACACTCAGCTTCGAGGGCACAT
* * * **
70897 CATTTACAGCATAACTCAAGGCTACAGGGGTTATCTGTCACCAAAAGACCTTCGAGTTTTACTAC
1 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGACTAC
* * * *
70962 GCACAGCTCCAAGGCATATCATTTGTAGTATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAA
66 GCTCAGCTCCAAGGCACATCATTTGCA-TATAGCTTAAGTCGAGAAGGGTTATCTG-C--C-AAA
* * * * * * *
71027 AACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCATAT
126 GACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACAT
* ** * * * * * *
71065 CATTTACAGCATAACTTAAATCGAGAAGAGTTATATGCCAACCAAAGACCTTCAAGTTCGACTAC
1 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGACTAC
* *
71130 GCTCAGCTCCAAGGCGCATCATTT-TATAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGA
66 GCTCAGCTCCAAGGCACATCATTTGCAT---ATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGA
*
71194 CCCTCGAGTTCGATTACACTCAGCTTCGAGGGTACAT
128 CCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACAT
* *
71231 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCAAGTTCGACTAC
1 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGACTAC
* * *
71296 GCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAAAAGGGCTATCTGCCAATAAAA
66 GCTCAGCTCCAAGGCACATCATTTGCA-TATAGCTTAAGTCGAGAAGGGTTATCTGCC----AAA
* * * * * *
71361 TACCTTCGAGTTCGATTGCACTCAGCTTAGA-GGCAAAC
126 GACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACAT
* * * * *
71399 CAAATTTACAGCATAGCTGAAGACAAGAAAGGTTATCTGTCAA
1 C--ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAA
71442 TAAATTTGTC
Statistics
Matches: 1171, Mismatches: 178, Indels: 42
0.84 0.13 0.03
Matches are distributed among these distances:
164 56 0.05
165 680 0.58
166 94 0.08
167 6 0.01
168 202 0.17
169 99 0.08
170 34 0.03
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (164 bp):
CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGACTAC
GCTCAGCTCCAAGGCACATCATTTGCATATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCC
TCGAGTTCGATTACACTCAGCTTCGAGGGCACAT
Found at i:70898 original size:333 final size:333
Alignment explanation
Indices: 69905--71388 Score: 2020
Period size: 333 Copynumber: 4.5 Consensus size: 333
69895 TAAAAGACAA
* * * *
69905 CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAAC-AAAGACCTTTGAGTTCGACTAT
1 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTAC
* * * *
69969 GCTCACCTCCAAGGCATATCATTTGCAGAATAGCTTAAGTCGAGAAAGGCTATCTGCCAAAGAC-
66 GCTCAGCTCCAAGGCATATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAAACA
* * * * * * *
70033 -CC-TCAAGTTTGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAA
131 ACCTTCGAGTTCGACTACACTCAGCTTCCAAGGCACATCATTTACAGCATAACTCAAAGCGAGAA
* ** * * * * **
70096 GGGTTATATGTGATCAAAAGACCTTCGAGTTCGACTACGTTCAGCTCCAAGGCACATCATTTGTA
196 GAGTTATATGCCAACCAAAGACCTTCAAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACA
* * *
70161 TCATAACTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGA
261 GCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGA
70226 GGGCACAT
326 GGGCACAT
* * * * *
70234 CATTTACAGCATAACTTAAGTCAATAAGGGTTATCTGCCAACC-AAAGACCTTCGAGTTCGACTA
1 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTC-ACCAAAAGACCTTCGAGTTCGACTA
* *
70298 CGCTCAGCTCCAAGGCAAATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGAC
65 CGCTCAGCTCCAAGGCATATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAAAC
* * * * * *
70363 --CC-TCGAGTTCAATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGA
130 AACCTTCGAGTTCGACTACACTCAGCTTCCAAGGCACATCATTTACAGCATAACTCAAAGCGAGA
* * * * * * *
70425 AGGGTTATTTGTC-ACCAAATGACCTTCGAGTTCGACTACGCTCAGCTCCAAGACATATCATTTG
195 AGAGTTATATGCCAACCAAA-GACCTTCAAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTA
* *
70489 CAGTATAGCTTAAGTTGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
259 CAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
*
70554 GAGGACACAT
324 GAGGGCACAT
* * **
70564 CATTTACAACATAACTCAAGGCTAGAGGGGTTATCTGTCACCAAAAGACCTTCGAGTTTTACTAC
1 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTAC
* * * * *
70629 GCACAGCTCCAAGGCATATCATTTGTAGTATAACTTAAGTCGAGAAGAGTTATCTGCCAACAAAC
66 GCTCAGCTCCAAGGCATATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAA-AAAC
* * * * *
70694 AACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCATATCATTTACAACATAACTTAAATCGAGA
130 AACCTTCGAGTTCGACTACACTCAGCTTCCAAGGCACATCATTTACAGCATAACTCAAAGCGAGA
*
70758 AGAGTTATATGCCAACCAAAGACCTTCAAGTTCGACTACGCTCAGCTCCAAGGCGCATCATTTAC
195 AGAGTTATATGCCAACCAAAGACCTTCAAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTAC
* *
70823 AGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCATCTTCA
260 AGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCG
70888 AGGGCACAT
325 AGGGCACAT
* * **
70897 CATTTACAGCATAACTCAAGGCTACAGGGGTTATCTGTCACCAAAAGACCTTCGAGTTTTACTAC
1 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTAC
* * * * *
70962 GCACAGCTCCAAGGCATATCATTTGTAGTATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAA
66 GCTCAGCTCCAAGGCATATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAA-AAAC
* * * *
71027 AACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCATATCATTTACAGCATAACTTAAATCGAGA
130 AACCTTCGAGTTCGACTACACTCAGCTTCCAAGGCACATCATTTACAGCATAACTCAAAGCGAGA
*
71091 AGAGTTATATGCCAACCAAAGACCTTCAAGTTCGACTACGCTCAGCTCCAAGGCGCATCATTTTA
195 AGAGTTATATGCCAACCAAAGACCTTCAAGTTCGACTACGCTCAGCTCCAAGGCACATCA-TTTA
*
71156 TAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
259 CAGCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTC
*
71221 GAGGGTACAT
324 GAGGGCACAT
*
71231 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCAAGTTCGACTAC
1 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTAC
* * *
71296 GCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAAAAGGGCTATCTGCCAATAAA-
66 GCTCAGCTCCAAGGCATATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAA-AAAC
* *
71360 ATACCTTCGAGTTCGATTGCACTCAGCTT
130 A-ACCTTCGAGTTCGACTACACTCAGCTT
71389 AGAGGCAAAC
Statistics
Matches: 1049, Mismatches: 95, Indels: 16
0.90 0.08 0.01
Matches are distributed among these distances:
329 40 0.04
330 367 0.35
331 3 0.00
333 401 0.38
334 237 0.23
335 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (333 bp):
CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGACTAC
GCTCAGCTCCAAGGCATATCATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAAACA
ACCTTCGAGTTCGACTACACTCAGCTTCCAAGGCACATCATTTACAGCATAACTCAAAGCGAGAA
GAGTTATATGCCAACCAAAGACCTTCAAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACA
GCATAGCTTAAGTCGAGAAGGGTTATCTGCCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGA
GGGCACAT
Found at i:71395 original size:84 final size:84
Alignment explanation
Indices: 69905--71375 Score: 1419
Period size: 84 Copynumber: 17.7 Consensus size: 84
69895 TAAAAGACAA
* * * * * * *
69905 CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAAC-AAAGACCTTTGAGTTCGACTAT
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
* *
69969 GCTCACCTCCAAGGCATAT
66 GCTCAGCTCCAAGGCACAT
* * * * * * * * *
69988 CATTTGCAGAATAGCTTAAGTCGAGAAAGGCTATCTG-C--C-AAAGACCCTCAAGTTTGATTAC
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
* * *
70049 ACTCAGCTTCGAGGGCACAT
66 GCTCAGC-TCCAAGGCACAT
* * * * ** *
70069 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATATGTGATCAAAAGACCTTCGAGTTCGACTAC
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
*
70134 GTTCAGCTCCAAGGCACAT
66 GCTCAGCTCCAAGGCACAT
** * ** *
70153 CATTTGTATCATAACTTAAGTCGAGAAGGGTTATCTG-C--C-AAAGACCCCCGAGTTCGATTAC
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
* * *
70214 ACTCAGCTTCGAGGGCACAT
66 GCTCAGC-TCCAAGGCACAT
* * *
70234 CATTTACAGCATAACTTAAGTCAATAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTAC
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
*
70299 GCTCAGCTCCAAGGCAAAT
66 GCTCAGCTCCAAGGCACAT
* * * * * * *
70318 CATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTG-C--C-AAAGACCCTCGAGTTCAATTAC
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
* * *
70379 ACTCAGCTTCGAGGGCACAT
66 GCTCAGC-TCCAAGGCACAT
* * * * * * *
70399 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATTTGTCACCAAATGACCTTCGAGTTCGACTAC
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
* *
70464 GCTCAGCTCCAAGACATAT
66 GCTCAGCTCCAAGGCACAT
* * * * * *
70483 CATTTGCAGTATAGCTTAAGTTGAGAAGGGTTATCTG-C--C-AAAGACCCTCGAGTTCGATTAC
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
* * *
70544 ACTCAGCTTCGAGGACACAT
66 GCTCAGCTCCAAGG-CACAT
* * * * * * * **
70564 CATTTACAACATAACTCAAGGCTAGAGGGGTTATCTGTCACCAAAAGACCTTCGAGTTTTACTAC
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
* *
70629 GCACAGCTCCAAGGCATAT
66 GCTCAGCTCCAAGGCACAT
** * *
70648 CATTTGTAGTATAACTTAAGTCGAGAAGAGTTATCTGCCAACAAACA-ACCTTCGAGTTCGACTA
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAA-AGACCTTCGAGTTCGACTA
*
70712 CGCTCAGCTCCAAGGCATAT
65 CGCTCAGCTCCAAGGCACAT
* * * * * *
70732 CATTTACAACATAACTTAAATCGAGAAGAGTTATATGCCAACCAAAGACCTTCAAGTTCGACTAC
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
*
70797 GCTCAGCTCCAAGGCGCAT
66 GCTCAGCTCCAAGGCACAT
* * *
70816 CATTTACAGCATAGCTTAAGTCGAGAAGGGTTATCTG-C--C-AAAGACCCTCGAGTTCGATTAC
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
* * *
70877 ACTCATCTTCAAGGGCACAT
66 GCTCAGCTCCAA-GGCACAT
* * * * * * * **
70897 CATTTACAGCATAACTCAAGGCTACAGGGGTTATCTGTCACCAAAAGACCTTCGAGTTTTACTAC
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
* *
70962 GCACAGCTCCAAGGCATAT
66 GCTCAGCTCCAAGGCACAT
** * *
70981 CATTTGTAGTATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAAACCTTCGAGTTCGACTAC
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
*
71046 GCTCAGCTCCAAGGCATAT
66 GCTCAGCTCCAAGGCACAT
* * * * *
71065 CATTTACAGCATAACTTAAATCGAGAAGAGTTATATGCCAACCAAAGACCTTCAAGTTCGACTAC
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
*
71130 GCTCAGCTCCAAGGCGCAT
66 GCTCAGCTCCAAGGCACAT
* * * *
71149 CATTTTATAGCATAGCTTAAGTCGAGAAGGGTTATCTG-C--C-AAAGACCCTCGAGTTCGATTA
1 CA-TTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
* * * *
71210 CACTCAGCTTCGAGGGTACAT
65 CGCTCAGC-TCCAAGGCACAT
* * * * * *
71231 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAAGACCTTCAAGTTCGACTAC
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
71296 GCTCAGCTCCAAGGCACAT
66 GCTCAGCTCCAAGGCACAT
* * * * * *
71315 CATTTGCAGCATAGCTTAAGTCGAAAAGGGCTATCTGCCAATAAAATACCTTCGAGTTCGA
1 CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGA
71376 TTGCACTCAG
Statistics
Matches: 1115, Mismatches: 240, Indels: 65
0.79 0.17 0.05
Matches are distributed among these distances:
80 128 0.11
81 245 0.22
82 17 0.02
83 34 0.03
84 509 0.46
85 182 0.16
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (84 bp):
CATTTACAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTAC
GCTCAGCTCCAAGGCACAT
Found at i:75827 original size:23 final size:23
Alignment explanation
Indices: 75792--75878 Score: 70
Period size: 23 Copynumber: 3.7 Consensus size: 23
75782 ACATATTATA
75792 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
** *
75815 TGGCACTTTGGTGCATTTCTACG
1 TGGCACTACGGTGCAATTCTACG
* * *
75838 CGGTC-CTTCGAG-ACAAAATTCTACG
1 TGG-CACTACG-GTGC--AATTCTACG
75863 TGGCACTACGGTGCAA
1 TGGCACTACGGTGCAA
75879 ATTTATACGA
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
23 29 0.60
24 4 0.08
25 15 0.31
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.28
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTACG
Found at i:76572 original size:7 final size:7
Alignment explanation
Indices: 76560--76589 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
76550 CTGTTCATCG
76560 CACTATT
1 CACTATT
76567 CACTATT
1 CACTATT
76574 CACTATT
1 CACTATT
76581 CACTATT
1 CACTATT
76588 CA
1 CA
76590 TACCATATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.40
Consensus pattern (7 bp):
CACTATT
Found at i:81778 original size:23 final size:23
Alignment explanation
Indices: 81744--81830 Score: 88
Period size: 23 Copynumber: 3.7 Consensus size: 23
81734 ACATATTATA
81744 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
* *
81767 TGGCACTTCGGTGCATTTCTACG
1 TGGCACTACGGTGCAATTCTACG
* *
81790 CGGTC-CTTCGG-GACAAAATTCTACG
1 TGG-CACTACGGTG-C--AATTCTACG
81815 TGGCACTACGGTGCAA
1 TGGCACTACGGTGCAA
81831 ATTTATATGA
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
22 1 0.02
23 32 0.62
24 2 0.04
25 16 0.31
26 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTACG
Found at i:83944 original size:31 final size:31
Alignment explanation
Indices: 83900--83979 Score: 117
Period size: 31 Copynumber: 2.6 Consensus size: 31
83890 CAACAGTTAC
83900 TTGGGGG-CCATATTGCAAACAGACTAAATG
1 TTGGGGGACCATATTGCAAACAGACTAAATG
*
83930 TTGGGGGACCATATTGCAAATAGACTAAATG
1 TTGGGGGACCATATTGCAAACAGACTAAATG
* **
83961 TTGGGAGACTGTATTGCAA
1 TTGGGGGACCATATTGCAA
83980 GTTTTAAAAG
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 7 0.16
31 38 0.84
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.26
Consensus pattern (31 bp):
TTGGGGGACCATATTGCAAACAGACTAAATG
Found at i:90223 original size:19 final size:19
Alignment explanation
Indices: 90199--90250 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
90189 CTATTAGAAT
90199 AAATAAATATGTTTTTTAC
1 AAATAAATATGTTTTTTAC
*
90218 AAATAAAT-TAGATTTTTAC
1 AAATAAATAT-GTTTTTTAC
*
90237 AAATATATATGTTT
1 AAATAAATATGTTT
90251 GTATCGTCGT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
18 1 0.04
19 26 0.93
20 1 0.04
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (19 bp):
AAATAAATATGTTTTTTAC
Found at i:100576 original size:6 final size:6
Alignment explanation
Indices: 100565--100603 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
100555 GCAGGTCGAC
100565 GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAA
1 GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAA
100604 CATGGAGGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (6 bp):
GAAGGA
Found at i:103708 original size:19 final size:19
Alignment explanation
Indices: 103684--103728 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
103674 GCAATGCAGT
103684 GCACTCACACTATGGAGTG
1 GCACTCACACTATGGAGTG
103703 GCACTCACACTATGGAGTG
1 GCACTCACACTATGGAGTG
103722 GCACTCA
1 GCACTCA
103729 AATCAACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (19 bp):
GCACTCACACTATGGAGTG
Found at i:117636 original size:23 final size:23
Alignment explanation
Indices: 117610--117661 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
117600 CAACATAGCC
117610 TTGTGATGCGCGGCAATGAAGCA
1 TTGTGATGCGCGGCAATGAAGCA
* * *
117633 TTGTGATGTGCGGCAATGGAGCC
1 TTGTGATGCGCGGCAATGAAGCA
117656 TTGTGA
1 TTGTGA
117662 AATCCATTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.21, C:0.15, G:0.37, T:0.27
Consensus pattern (23 bp):
TTGTGATGCGCGGCAATGAAGCA
Found at i:127475 original size:2 final size:2
Alignment explanation
Indices: 127468--127527 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
127458 CTCGACCCAA
127468 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
127510 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
127528 GTAAAACCCG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:127718 original size:23 final size:21
Alignment explanation
Indices: 127692--127736 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 21
127682 TTTAAAATAA
127692 TTAA-ATTAATATAATTAATATTT
1 TTAATATTAA-ATAA-T-ATATTT
127715 TTAATATTAAATAATATATTT
1 TTAATATTAAATAATATATTT
127736 T
1 T
127737 AATTATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 7 0.33
22 1 0.05
23 8 0.38
24 5 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTAATATTAAATAATATATTT
Found at i:127731 original size:19 final size:19
Alignment explanation
Indices: 127697--127739 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
127687 AATAATTAAA
*
127697 TTAATATAATTAATAT-TT
1 TTAATATAAATAATATATT
127715 TTAATATTAAATAATATATT
1 TTAATA-TAAATAATATATT
127735 TTAAT
1 TTAAT
127740 TATATAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.27
19 9 0.41
20 7 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTAATATAAATAATATATT
Found at i:144556 original size:49 final size:49
Alignment explanation
Indices: 144500--144597 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
144490 TCAACTTTTG
144500 ATACTTGCAATACAATCATTGAATTTTTAGTTCGTTTTCAATAAGGTTA
1 ATACTTGCAATACAATCATTGAATTTTTAGTTCGTTTTCAATAAGGTTA
144549 ATACTTGCAATACAATCATTGAATTTTTAGTTCGTTTTCAATAAGGTTA
1 ATACTTGCAATACAATCATTGAATTTTTAGTTCGTTTTCAATAAGGTTA
144598 CTATCGTTAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (49 bp):
ATACTTGCAATACAATCATTGAATTTTTAGTTCGTTTTCAATAAGGTTA
Found at i:144644 original size:3 final size:3
Alignment explanation
Indices: 144636--144671 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
144626 GACGTGGCAG
144636 CTT CTT CTT -TT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
144672 AAAACTCTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:161576 original size:23 final size:23
Alignment explanation
Indices: 161562--161620 Score: 109
Period size: 23 Copynumber: 2.6 Consensus size: 23
161552 AACATACTAA
161562 GTAGCGCTTATATAATGTAATAG
1 GTAGCGCTTATATAATGTAATAG
*
161585 GTAACGCTTATATAATGTAATAG
1 GTAGCGCTTATATAATGTAATAG
161608 GTAGCGCTTATAT
1 GTAGCGCTTATAT
161621 TTACCTATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (23 bp):
GTAGCGCTTATATAATGTAATAG
Found at i:162071 original size:23 final size:23
Alignment explanation
Indices: 162035--162107 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
162025 ATACTTTACA
* *
162035 ATATAAGCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
*
162058 ATATAAACGTTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
* *
162081 ATATAAGCGCTACCTATTACATC
1 ATATAAACGCTACCTATTACATT
162104 ATAT
1 ATAT
162108 TTTTACCTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:162486 original size:429 final size:430
Alignment explanation
Indices: 161687--163583 Score: 3431
Period size: 426 Copynumber: 4.5 Consensus size: 430
161677 TATTACATTA
* *
161687 TATTATATTGAAAGTGTCCACACTTTTTATAAAAATGATCGATACTTC-TTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
161751 TTATGTTTTAATTTTTTTAATAGTG-TTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
161815 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTA
161880 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
*
161945 TTAAAACTCACTCAAAAGATAACCTTAAATTAATATTTTCCACAGTGAAAAAAGTATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
* *
162010 TTATAAAAAGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGTTACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
162075 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
* *
162115 TATTATATTGAAAGTGTCTATACTTTTTATAAAAAGGATCGATACTTATTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
162180 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
162245 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTT
162310 AATAATAATATATATCGTAACGT-AAAAATAAATCATTAG-CGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
*
162373 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGGCACT
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
* *
162438 TTTATAAAAATGATAGATACTTTACAATATAACCACTACCTGTTACATTATATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
162503 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
* * *
162544 TATTATATTGAATGTGTTCATACTTTTTATAAAAATGATCGATACTTCTTTT-AAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
162608 TTATGTTTCAATTTTTTTAATAGTG-TTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
162672 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTA
162737 ATAATAATATATATCGTAACGT-AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
196 ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
162801 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAA--ATGGACACTT
261 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
162864 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATAT-AACGATACCTAT
326 TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
*
162928 TACATTATATAAGCGCTACATATTACATCATATTTTTACC
391 TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
162968 TATTATATTGAAAGTGTACATAC-TTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
163032 TTATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
66 TTATGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
*
163097 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTTTAATTT
130 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTT
163162 AATAAT-A-ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
195 AATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATAT
*
163225 CTTAAAACTCACTCAAAGGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACAC-
260 CTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACT
163289 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACA-T-TATAAACGATACCTA
325 TTTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTA
163352 TTACA-T-TATAAGCGCTACCTATTACATCATA-TTTTACC
390 TTACATTATATAAGCGCTACCTATTACATCATATTTTTACC
*
163390 TATTATATTGAAAGTGTCCATACTTTTTA-AAAAAGGATCGATACTTCTTTTAAAGTTATATAAT
1 TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
*
163454 TTATGTTTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
66 TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
*
163519 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA-TTTAAATTTA
131 TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTA
163583 A
196 A
163584 CAACATTAAC
Statistics
Matches: 1426, Mismatches: 31, Indels: 32
0.96 0.02 0.02
Matches are distributed among these distances:
420 10 0.01
421 106 0.07
422 74 0.05
423 56 0.04
424 113 0.08
425 185 0.13
426 297 0.21
427 100 0.07
428 67 0.05
429 262 0.18
430 30 0.02
431 126 0.09
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (430 bp):
TATTATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTCTTTTAAAGTTATGTAAT
TTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCA
TTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTTTAATTTA
ATAATAATATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATC
TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
TTATAAAAAGGATAGATACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTAT
TACATTATATAAGCGCTACCTATTACATCATATTTTTACC
Found at i:162500 original size:23 final size:23
Alignment explanation
Indices: 162474--162536 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
162464 ATATAACCAC
*
162474 TACCTGTTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
162497 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
162520 TACCTATTACATCATAT
1 TACCTATTACATTATAT
162537 TTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.21, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:162955 original size:23 final size:22
Alignment explanation
Indices: 162889--162960 Score: 90
Period size: 23 Copynumber: 3.2 Consensus size: 22
162879 ATACTTTACA
*
162889 ATATAACCACTACCTATTACATT
1 ATATAA-CGCTACCTATTACATT
*
162912 ATATAACGATACCTATTACATT
1 ATATAACGCTACCTATTACATT
* *
162934 ATATAAGCGCTACATATTACATC
1 ATATAA-CGCTACCTATTACATT
162957 ATAT
1 ATAT
162961 TTTTACCTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
22 20 0.47
23 23 0.53
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.35
Consensus pattern (22 bp):
ATATAACGCTACCTATTACATT
Found at i:163340 original size:21 final size:21
Alignment explanation
Indices: 163310--163378 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
163300 GATAGATACT
*
163310 TTACAATATAACCACTACCTA
1 TTACATTATAACCACTACCTA
*
163331 TTACATTATAAACGA-TACCTA
1 TTACATTAT-AACCACTACCTA
* *
163352 TTACATTATAAGCGCTACCTA
1 TTACATTATAACCACTACCTA
163373 TTACAT
1 TTACAT
163379 CATATTTTAC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 2 0.05
21 35 0.85
22 4 0.10
ACGTcount: A:0.39, C:0.23, G:0.04, T:0.33
Consensus pattern (21 bp):
TTACATTATAACCACTACCTA
Found at i:163849 original size:39 final size:39
Alignment explanation
Indices: 163795--163881 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
163785 TCAAGTTGTA
*
163795 GATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
*
163834 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
163873 GATTTTGAT
1 GATTTTGAT
163882 GAGCATCGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.17, C:0.14, G:0.21, T:0.48
Consensus pattern (39 bp):
GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
Found at i:164139 original size:18 final size:18
Alignment explanation
Indices: 164116--164152 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
164106 CGAAATATAT
164116 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
164134 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
164152 A
1 A
164153 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:164573 original size:25 final size:25
Alignment explanation
Indices: 164539--164588 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
164529 ATTATTTTTC
*
164539 CAAATAATGTACCCATAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
164564 CAAATAATGTACCCACAACAATGTT
1 CAAATAATGTACCCACAACAATGTT
164589 TAATTGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.26
Consensus pattern (25 bp):
CAAATAATGTACCCACAACAATGTT
Found at i:164880 original size:21 final size:21
Alignment explanation
Indices: 164850--164920 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
164840 GATAGATACT
*
164850 TTACAATATAACCACTACCTA
1 TTACATTATAACCACTACCTA
*
164871 TTACATTATAAACGA-TACCTA
1 TTACATTAT-AACCACTACCTA
* *
164892 TTACATTATATAAACGCTACCTA
1 TTACA-T-TATAACCACTACCTA
164915 TTACAT
1 TTACAT
164921 CATATTTTAC
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
21 19 0.46
22 8 0.20
23 14 0.34
ACGTcount: A:0.41, C:0.23, G:0.03, T:0.34
Consensus pattern (21 bp):
TTACATTATAACCACTACCTA
Found at i:164907 original size:23 final size:23
Alignment explanation
Indices: 164865--164925 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
164855 ATATAACCAC
164865 TACCTATTACA-T-TATAAACGA
1 TACCTATTACATTATATAAACGA
*
164886 TACCTATTACATTATATAAACGC
1 TACCTATTACATTATATAAACGA
*
164909 TACCTATTACATCATAT
1 TACCTATTACATTATAT
164926 TTTACCTATA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.31
22 1 0.03
23 24 0.67
ACGTcount: A:0.39, C:0.21, G:0.03, T:0.36
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:168319 original size:183 final size:183
Alignment explanation
Indices: 167794--168286 Score: 882
Period size: 183 Copynumber: 2.7 Consensus size: 183
167784 TTAAAATTAC
*
167794 CGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGA-ACCAA
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACA-CAA
* * *
167858 TATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATACTTATACCGGT
65 TATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGT
* *
167923 TATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAATGT
130 TATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
167977 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
1 CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
168042 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
66 ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
168107 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
131 ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
*
168160 CGACACTTTTTGACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
1 CGACACTTTTTTA-AATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAA
*
168224 TATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAATCGGTATATTTATACCG
65 TATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCG
168287 ATAGCATTGC
Statistics
Matches: 300, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
183 296 0.99
184 4 0.01
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (183 bp):
CGACACTTTTTTAAATCGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTACCGACACAAT
ATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCGCATAAAACCGGTATATTTATACCGGTT
ATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTGTAAATGT
Found at i:168701 original size:23 final size:23
Alignment explanation
Indices: 168675--168734 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
168665 TAACCACTAT
168675 CTATTACATTATATAAACGATAC
1 CTATTACATTATATAAACGATAC
* *
168698 CTATTACATTATATAAGCGCTAC
1 CTATTACATTATATAAACGATAC
*
168721 CTATTACATCATAT
1 CTATTACATTATAT
168735 TTTTACCTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.37
Consensus pattern (23 bp):
CTATTACATTATATAAACGATAC
Found at i:170334 original size:9 final size:9
Alignment explanation
Indices: 170319--170396 Score: 75
Period size: 9 Copynumber: 8.7 Consensus size: 9
170309 ACTTGTTTGG
170319 ATCATCATC
1 ATCATCATC
*
170328 TTCATCATC
1 ATCATCATC
170337 ATCATCATC
1 ATCATCATC
*
170346 GTCATCATC
1 ATCATCATC
* *
170355 TTCATCGTC
1 ATCATCATC
* *
170364 AGCTTCATC
1 ATCATCATC
*
170373 GTCATCATC
1 ATCATCATC
*
170382 ATCGTCATC
1 ATCATCATC
*
170391 TTCATC
1 ATCATC
170397 GTCAGCTTCA
Statistics
Matches: 53, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 53 1.00
ACGTcount: A:0.23, C:0.33, G:0.06, T:0.37
Consensus pattern (9 bp):
ATCATCATC
Found at i:170336 original size:12 final size:12
Alignment explanation
Indices: 170323--170408 Score: 100
Period size: 12 Copynumber: 6.9 Consensus size: 12
170313 GTTTGGATCA
*
170323 TCATCTTCATCA
1 TCATCTTCATCG
*
170335 TCATCATCATCG
1 TCATCTTCATCG
170347 TCATCATCTTCATCG
1 ---TCATCTTCATCG
*
170362 TCAGCTTCATCG
1 TCATCTTCATCG
*
170374 TCATCATCATCG
1 TCATCTTCATCG
170386 TCATCTTCATCG
1 TCATCTTCATCG
*
170398 TCAGCTTCATC
1 TCATCTTCATC
170409 TTCTGCGACC
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
12 52 0.83
15 11 0.17
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.37
Consensus pattern (12 bp):
TCATCTTCATCG
Found at i:170338 original size:6 final size:6
Alignment explanation
Indices: 170319--170396 Score: 75
Period size: 6 Copynumber: 13.0 Consensus size: 6
170309 ACTTGTTTGG
* * * * *
170319 ATCATC ATCTTC ATCATC ATCATC ATCGTC ATCATC TTCATC GTCAGC
1 ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC
* * * *
170367 TTCATC GTCATC ATCATC GTCATC TTCATC
1 ATCATC ATCATC ATCATC ATCATC ATCATC
170397 GTCAGCTTCA
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.23, C:0.33, G:0.06, T:0.37
Consensus pattern (6 bp):
ATCATC
Found at i:170342 original size:18 final size:18
Alignment explanation
Indices: 170320--170411 Score: 85
Period size: 18 Copynumber: 5.1 Consensus size: 18
170310 CTTGTTTGGA
* *
170320 TCATCATCTTCATCATCA
1 TCATCATCATCATCATCT
*
170338 TCATCATCGTCATCATCT
1 TCATCATCATCATCATCT
* * * *
170356 TCATCGTCAGCTTCATCG
1 TCATCATCATCATCATCT
*
170374 TCATCATCATCGTCATCT
1 TCATCATCATCATCATCT
* * *
170392 TCATCGTCAGCTTCATCT
1 TCATCATCATCATCATCT
170410 TC
1 TC
170412 TGCGACCGCT
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 60 1.00
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.38
Consensus pattern (18 bp):
TCATCATCATCATCATCT
Found at i:170372 original size:36 final size:36
Alignment explanation
Indices: 170332--170408 Score: 127
Period size: 36 Copynumber: 2.1 Consensus size: 36
170322 ATCATCTTCA
*
170332 TCATCATCATCATCGTCATCATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGTCAGCT
* *
170368 TCATCGTCATCATCATCGTCATCTTCATCGTCAGCT
1 TCATCATCATCATCATCATCATCTTCATCGTCAGCT
170404 TCATC
1 TCATC
170409 TTCTGCGACC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.21, C:0.34, G:0.09, T:0.36
Consensus pattern (36 bp):
TCATCATCATCATCATCATCATCTTCATCGTCAGCT
Found at i:170411 original size:6 final size:6
Alignment explanation
Indices: 170323--170411 Score: 70
Period size: 6 Copynumber: 14.3 Consensus size: 6
170313 GTTTGGATCA
* * * * *
170323 TCATCT TCATCA TCATCA TCATCGT CATCATCT TCATCG TCAGCT TCATCG
1 TCATCT TCATCT TCATCT TCATC-T --TCATCT TCATCT TCATCT TCATCT
* * * *
170374 TCATCA TCATCG TCATCT TCATCG TCAGCT TCATCT TC
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TC
170412 TGCGACCGCT
Statistics
Matches: 66, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
6 60 0.91
8 1 0.02
9 5 0.08
ACGTcount: A:0.20, C:0.34, G:0.08, T:0.38
Consensus pattern (6 bp):
TCATCT
Found at i:172396 original size:198 final size:198
Alignment explanation
Indices: 171879--172848 Score: 1782
Period size: 199 Copynumber: 4.9 Consensus size: 198
171869 TTTAAATTAG
*
171879 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTTTCTCATAAAACCGGTATAC
1 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
171944 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
66 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
*
172009 GACACTTTTTATATATGGATCGACACTTTATGGGTGCACCCTGTTTTCCATTCATTCTGGAACAA
131 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC-A
172074 AAAA
195 AAAA
* *
172078 TATCGACGCCAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
1 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
*
172143 TTGTACTGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
66 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
*
172208 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACCAA
131 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACAA
172273 AAA
196 AAA
172276 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
1 TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
*
172341 TTATACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
66 TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
172406 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACAA
131 GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACAA
172471 AAA
196 AAA
*
172474 TATCGACACAAACTAAAATAGTGTCGACATATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAA-AGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
172539 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
65 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGTTTTTGGGA
172604 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC
129 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAAC
172669 AAAAA
194 AAAAA
*
172674 TATCGACACAAACTAAAATAGTGTCGACACAATATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAA-AGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
172739 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
65 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGG-GTTCGATGTTTTTGGGA
172804 TCGACAC-TTTT-TATATGGATCGACACTTTATGGTTGCACCCTGTT
129 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTT
172849 GGCCATATTG
Statistics
Matches: 753, Mismatches: 16, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
198 250 0.33
199 282 0.37
200 221 0.29
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.36
Consensus pattern (198 bp):
TATCGACACAAACTAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATAC
TTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGTTTTTGGGATC
GACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGAACAA
AAA
Found at i:173012 original size:19 final size:19
Alignment explanation
Indices: 172966--173014 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
172956 TTATATTCAC
*
172966 ATACAAAAATATAAATCGT
1 ATACAAAATTATAAATCGT
*
172985 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
173004 ATACAAAATTA
1 ATACAAAATTA
173015 ACCCTACATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:174798 original size:33 final size:33
Alignment explanation
Indices: 174761--174826 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
174751 CATCTTAATA
*
174761 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
174794 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
174827 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:174885 original size:21 final size:21
Alignment explanation
Indices: 174860--174903 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
174850 CCCCTTATGC
174860 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
* *
174881 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
174902 CT
1 CT
174904 TGATTGTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.32, G:0.11, T:0.41
Consensus pattern (21 bp):
CTCTCAAGTGTATCTTCGACT
Found at i:176374 original size:19 final size:19
Alignment explanation
Indices: 176350--176388 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
176340 TCGAATGCAT
176350 TCCATGCACCGATGCACTC
1 TCCATGCACCGATGCACTC
*
176369 TCCATGCATCGATGCACTC
1 TCCATGCACCGATGCACTC
176388 T
1 T
176389 GAATATTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.38, G:0.15, T:0.26
Consensus pattern (19 bp):
TCCATGCACCGATGCACTC
Found at i:176489 original size:64 final size:65
Alignment explanation
Indices: 176336--176496 Score: 218
Period size: 65 Copynumber: 2.5 Consensus size: 65
176326 GAATTAATTG
* * *** *
176336 AACATCGAATGCATTCCATGCACCGATGCACTCTCCATGCATCGATGCACTCTGAATATTTTCAA
1 AACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCGATGCACTCAGAATATTTTCAA
* **
176401 AACATCGAATGCATTTGATGCATCGATGCACAAGCCATGCATCGATGCA-TCAGGCTATTTTTC-
1 AACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCGATGCACTCAGAATA-TTTTCA
176464 A
65 A
176465 AACATCGAATGCATTTCATGCATCGATGCACA
1 AACATCGAATGCATTTCATGCATCGATGCACA
176497 CTTGGTGCAC
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
64 37 0.44
65 48 0.56
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (65 bp):
AACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCGATGCACTCAGAATATTTTCAA
Found at i:176511 original size:64 final size:64
Alignment explanation
Indices: 176336--176516 Score: 220
Period size: 64 Copynumber: 2.8 Consensus size: 64
176326 GAATTAATTG
* * * *
176336 AACATCGAATGCATTCCATGCACCGATGCACTCTCCATGCATCGATGCACTCTGAATATTTTCAA
1 AACATCGAATGCATTTCATGCATCGATGCACACTCCATGCATCGATGCA-TCAGAATATTTTCAA
* ** **
176401 AACATCGAATGCATTTGATGCATCGATGCACAAGCCATGCATCGATGCATCAGGCTATTTTTC-A
1 AACATCGAATGCATTTCATGCATCGATGCACACTCCATGCATCGATGCATCAGAATA-TTTTCAA
*** *
176465 AACATCGAATGCATTTCATGCATCGATGCACACTTGGTGCACCGATGCATCA
1 AACATCGAATGCATTTCATGCATCGATGCACACTCCATGCATCGATGCATCA
176517 AGTGTTCCAA
Statistics
Matches: 99, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
64 51 0.52
65 48 0.48
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (64 bp):
AACATCGAATGCATTTCATGCATCGATGCACACTCCATGCATCGATGCATCAGAATATTTTCAA
Found at i:183900 original size:21 final size:21
Alignment explanation
Indices: 183858--183901 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
183848 ACCCCGGGAG
*
183858 CTAGTTCTTCACGAGCTGCTC
1 CTAGTTCTTCACGAGCTCCTC
* *
183879 CTAGTTCTTCTCGTGCTCCTC
1 CTAGTTCTTCACGAGCTCCTC
183900 CT
1 CT
183902 CCTCCTCCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.09, C:0.36, G:0.16, T:0.39
Consensus pattern (21 bp):
CTAGTTCTTCACGAGCTCCTC
Found at i:184555 original size:16 final size:16
Alignment explanation
Indices: 184534--184566 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
184524 AAGGGGGAGT
184534 AAGTTTTTCAAAATCG
1 AAGTTTTTCAAAATCG
184550 AAGTTTTTCAAAATCG
1 AAGTTTTTCAAAATCG
184566 A
1 A
184567 TTTCAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (16 bp):
AAGTTTTTCAAAATCG
Found at i:184967 original size:19 final size:19
Alignment explanation
Indices: 184943--184981 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
184933 TCGAATGCAT
184943 TCCATGCACCGATGCACTC
1 TCCATGCACCGATGCACTC
*
184962 TCCATGCATCGATGCACTC
1 TCCATGCACCGATGCACTC
184981 T
1 T
184982 GAATATTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.38, G:0.15, T:0.26
Consensus pattern (19 bp):
TCCATGCACCGATGCACTC
Found at i:185049 original size:45 final size:46
Alignment explanation
Indices: 184964--185069 Score: 153
Period size: 45 Copynumber: 2.3 Consensus size: 46
184954 ATGCACTCTC
*
184964 CATGCATCGATGCACTCTGAATATTTTCAAAACATCGAATGCATTT
1 CATGCATCGATGCACTCAGAATATTTTCAAAACATCGAATGCATTT
* **
185010 GATGCATCGATGCA-TCAGGCTATTTTTC-AAACATCGAATGCATTT
1 CATGCATCGATGCACTCAGAATA-TTTTCAAAACATCGAATGCATTT
185055 CATGCATCGATGCAC
1 CATGCATCGATGCAC
185070 ACTTGGTGCA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
45 35 0.66
46 18 0.34
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (46 bp):
CATGCATCGATGCACTCAGAATATTTTCAAAACATCGAATGCATTT
Found at i:186496 original size:16 final size:16
Alignment explanation
Indices: 186475--186509 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
186465 ACTTTCTACC
186475 TGCAATCGTTCCCAAA
1 TGCAATCGTTCCCAAA
186491 TGCAATCGTTCCCAAA
1 TGCAATCGTTCCCAAA
186507 TGC
1 TGC
186510 TTCTTTACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (16 bp):
TGCAATCGTTCCCAAA
Found at i:187313 original size:178 final size:177
Alignment explanation
Indices: 186864--187335 Score: 669
Period size: 178 Copynumber: 2.6 Consensus size: 177
186854 CGTACTTACG
* *
186864 AAAGTATCGACACTTTCAATATATCCGGTATA-ATTTTACCGGTTTTATCATTTTGATATCGGTT
1 AAAGTATCGACACTTTCAATATATCCGGTA-ACGTTTTACCGGTTTTATCATTTT-ATACCGGTT
* *
186928 TTATCATATTTTTACCTGTTATATCGTTGTGGATCGATATATTTTTTTTAAAGTATCGACACATT
64 TTATCATATTTTTACCTGTTATATCGTTTTGGATCGATACA--TTTTTT-AAG-ATCGACACATT
*
186993 ATAGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
125 ATAGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
* *
187046 AAAGTATCGACACTTTCAATATATCTGGTAACGTTTTACCGGTTTTATCATTTTGTAACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTAT-ACCGGTTT
* *
187111 TATCATATTTTTACCTGGTATATCGTTTTGGATCGATACATTTTTTAA-ATCGACACTTTATAGG
65 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAGATCGACACATTATAGG
** *
187175 ATTTAAAACTGCTTCTCTTTTAAATTCACGAAGTGTCGATCCTTATATT
130 AGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
* * * * *
187224 AAAGTACCGACACTTTAAATGTATCCGGTAGCGCTTTACCGGTTTTATCATTTCTATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTT-TATACCGGTTT
* * *
187289 TGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACACATTTTTTA
65 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTA
187336 TTTGGATCGA
Statistics
Matches: 263, Mismatches: 23, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
177 58 0.22
178 99 0.38
179 4 0.02
180 6 0.02
181 2 0.01
182 94 0.36
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (177 bp):
AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTATACCGGTTTT
ATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAGATCGACACATTATAGGA
GCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATAT
Found at i:187853 original size:227 final size:228
Alignment explanation
Indices: 187404--187893 Score: 867
Period size: 227 Copynumber: 2.1 Consensus size: 228
187394 ACTTTTATAC
187404 GTATGGACACTTTTATAAAAATGATATATACTTTTTCTAAAGTTATGTAATTTATGTTTCAATTT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTCTAAAGTTATGTAATTTATGTTTCAA-TT
*
187469 TTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
65 TTTTTAATAGTGTTTCATGCTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAA
187534 TTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
130 TTATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
* *
187599 TATAATAATAAATATGTTTTCCACAGTGAAATAA
195 GATAATAATAAATATATTTTCCACAGTGAAATAA
** *
187633 GTATGGACACTTTTATAAAAATGATATATTTTTTTTTTAAAGTTATGTAATTTATGTTTCAA-TT
1 GTATGGACACTTTTATAAAAATGATATATACTTTTTCTAAAGTTATGTAATTTATGTTTCAATTT
*
187697 TTTTAATAGTGTTTCATGCTTTCCACCTACAATATTAATTTAATAATTTCATTTACACATAAAAT
66 TTTTAATAGTGTTTCATGCTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
187762 TATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
131 TATTTGATT-TTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAA
187827 GATAATAATAAATATATTTT-CACAGTGAAATAA
195 GATAATAATAAATATATTTTCCACAGTGAAATAA
* *
187860 GTATGGACACTTTTATAAAAAGGATAGATACTTT
1 GTATGGACACTTTTATAAAAATGATATATACTTT
187894 ACAATATAAC
Statistics
Matches: 249, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
227 117 0.47
228 73 0.29
229 59 0.24
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (228 bp):
GTATGGACACTTTTATAAAAATGATATATACTTTTTCTAAAGTTATGTAATTTATGTTTCAATTT
TTTTAATAGTGTTTCATGCTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAAT
TATTTGATTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAG
ATAATAATAAATATATTTTCCACAGTGAAATAA
Found at i:188830 original size:10 final size:10
Alignment explanation
Indices: 188815--188858 Score: 61
Period size: 10 Copynumber: 4.1 Consensus size: 10
188805 CATTTAAATG
188815 ATAAACGAAC
1 ATAAACGAAC
188825 ATAAACGAACAC
1 ATAAACG-A-AC
188837 AATAAACGAAC
1 -ATAAACGAAC
188848 ATAAACGAAC
1 ATAAACGAAC
188858 A
1 A
188859 ACACAAACAC
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
10 18 0.58
11 3 0.10
12 3 0.10
13 7 0.23
ACGTcount: A:0.61, C:0.20, G:0.09, T:0.09
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:188845 original size:23 final size:23
Alignment explanation
Indices: 188815--188858 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
188805 CATTTAAATG
188815 ATAAACGAACATAAACGAACACA
1 ATAAACGAACATAAACGAACACA
188838 ATAAACGAACATAAACGAACA
1 ATAAACGAACATAAACGAACA
188859 ACACAAACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.61, C:0.20, G:0.09, T:0.09
Consensus pattern (23 bp):
ATAAACGAACATAAACGAACACA
Found at i:188866 original size:23 final size:23
Alignment explanation
Indices: 188817--188866 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
188807 TTTAAATGAT
*
188817 AAACGAACATAAACGAACACAAT
1 AAACGAACATAAACGAACACAAC
188840 AAACGAACATAAACGAACA-ACAC
1 AAACGAACATAAACGAACACA-AC
188863 AAAC
1 AAAC
188867 ACAAAAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 1 0.04
23 24 0.96
ACGTcount: A:0.62, C:0.24, G:0.08, T:0.06
Consensus pattern (23 bp):
AAACGAACATAAACGAACACAAC
Found at i:202351 original size:2 final size:2
Alignment explanation
Indices: 202344--202373 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
202334 GGTTTATTTC
202344 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
202374 GTGAGCAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:224456 original size:2 final size:2
Alignment explanation
Indices: 224449--224482 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
224439 GAGACCGCGA
224449 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
224483 TAAGTTTGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:229811 original size:29 final size:30
Alignment explanation
Indices: 229767--229823 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
229757 ACATCTAATT
*
229767 TTTTTTATAAATATTAACTTTC-TAAAACA
1 TTTTTTATAAATATTAAATTTCATAAAACA
229796 TTTTTT-TAAATAATTAAATTTCATAAAA
1 TTTTTTATAAAT-ATTAAATTTCATAAAA
229824 GAGTGAAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 5 0.20
29 15 0.60
30 5 0.20
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (30 bp):
TTTTTTATAAATATTAAATTTCATAAAACA
Found at i:234226 original size:25 final size:24
Alignment explanation
Indices: 234198--234251 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
234188 TTTATTGAAA
234198 ATATGTTT-TCGCCCCTTAAAATTTT
1 ATATGTTTGTCGCCCCTT--AATTTT
* *
234223 ATATGTTTGTCTCCTCTTAATTTT
1 ATATGTTTGTCGCCCCTTAATTTT
234247 ATATG
1 ATATG
234252 CTCGTCCCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 11 0.42
25 8 0.31
26 7 0.27
ACGTcount: A:0.22, C:0.17, G:0.09, T:0.52
Consensus pattern (24 bp):
ATATGTTTGTCGCCCCTTAATTTT
Found at i:241977 original size:54 final size:54
Alignment explanation
Indices: 241775--241977 Score: 189
Period size: 54 Copynumber: 3.8 Consensus size: 54
241765 AGAAGCCGAG
* *
241775 GTTGATTCCCTTCTAGAAATTAGATTTCCAGTAATGCTGCC-A-CTAGATGCAGAA
1 GTTGATTCCCTTCTAGAAATTTGATTTCCAGTAATGAT-CCTATCTAGATGCA-AA
* * * *
241829 TTTGATTGCCTTCTAGAAATTTGATTTACAGTAACGATCCTAT-TAGATGCAAA
1 GTTGATTCCCTTCTAGAAATTTGATTTCCAGTAATGATCCTATCTAGATGCAAA
* * * * * * * *
241882 GGTTGATTCCTTTCGAGAACTTTGATTTCGAGCATTCATCCTATCTGAGGTG-AAA
1 -GTTGATTCCCTTCTAGAAATTTGATTTCCAGTAATGATCCTATCT-AGATGCAAA
* * *
241937 GTTGATTCCCTTCTAGAAATTCGATCTCCAGTAATTATCCT
1 GTTGATTCCCTTCTAGAAATTTGATTTCCAGTAATGATCCT
241978 GTCAGAAGTA
Statistics
Matches: 117, Mismatches: 27, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
53 4 0.03
54 105 0.90
55 4 0.03
56 4 0.03
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (54 bp):
GTTGATTCCCTTCTAGAAATTTGATTTCCAGTAATGATCCTATCTAGATGCAAA
Found at i:246472 original size:32 final size:32
Alignment explanation
Indices: 246423--246497 Score: 82
Period size: 32 Copynumber: 2.4 Consensus size: 32
246413 GTTTAATGTC
246423 TAATTTT-TAA-AATTTTAATAAAATTAAAAGA
1 TAATTTTATAATAA-TTTAATAAAATTAAAAGA
* * * * *
246454 TCATTTTATAATAATTTAATCAAGTTTAATGA
1 TAATTTTATAATAATTTAATAAAATTAAAAGA
246486 TAATTTTATAAT
1 TAATTTTATAAT
246498 GATATGATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
31 6 0.17
32 28 0.78
33 2 0.06
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.47
Consensus pattern (32 bp):
TAATTTTATAATAATTTAATAAAATTAAAAGA
Found at i:252203 original size:44 final size:43
Alignment explanation
Indices: 252045--252313 Score: 242
Period size: 43 Copynumber: 6.3 Consensus size: 43
252035 TGTGTACAAA
* ** *
252045 AAACGCCGCAATAGGTGACGATATATAGCGGC-TTTTGT-TCAC
1 AAACGCCGCAATAGATGTTGATATTTAGCGGCGTTTT-TATCAC
* * * *
252087 AAAACGCCGCAATAGGTGTTGCTATGTAGCGGCGTTTTTATTAC
1 -AAACGCCGCAATAGATGTTGATATTTAGCGGCGTTTTTATCAC
* * * * *
252131 AAACGCTGCAATAGATGTTGATTTTTAGCGGCATTTTTCTTAC
1 AAACGCCGCAATAGATGTTGATATTTAGCGGCGTTTTTATCAC
* **
252174 AAACGCCGCAAATAGATGTTGATTTTTAGCGGCGTTTTTCCCAC
1 AAACGCCGC-AATAGATGTTGATATTTAGCGGCGTTTTTATCAC
* * * * * *
252218 AAACGTCGCAGTAGTTGTTTATATTTAGCGGCGCTTTTATCGC
1 AAACGCCGCAATAGATGTTGATATTTAGCGGCGTTTTTATCAC
* *
252261 AAACGCCGCAATA-ATTTTGAGATTTAGCGGCGTTTTT-TCCAC
1 AAACGCCGCAATAGATGTTGATATTTAGCGGCGTTTTTAT-CAC
252303 ACAA-GCCGCAA
1 A-AACGCCGCAA
252314 ATGTGTTGAG
Statistics
Matches: 188, Mismatches: 33, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 29 0.15
43 112 0.60
44 46 0.24
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (43 bp):
AAACGCCGCAATAGATGTTGATATTTAGCGGCGTTTTTATCAC
Found at i:252220 original size:87 final size:86
Alignment explanation
Indices: 252083--252303 Score: 230
Period size: 87 Copynumber: 2.6 Consensus size: 86
252073 CGGCTTTTGT
* * * **
252083 TCACAAAACGCCGCAATAGGTGTTGCTATGTAGCGGCGTTTTTATTACAAACG-CTGCAATAGAT
1 TCAC-AAACGCCGCAATAGATGTTGATATTTAGCGGCGTTTTTACCACAAACGTC-GCAATAGAT
* * *
252147 GTTGATTTTTAGCGGCATTTTTC
64 GTTGATATTTAGCGGCACTTTTA
* * * * *
252170 TTACAAACGCCGCAAATAGATGTTGATTTTTAGCGGCGTTTTTCCCACAAACGTCGCAGTAGTTG
1 TCACAAACGCCGC-AATAGATGTTGATATTTAGCGGCGTTTTTACCACAAACGTCGCAATAGATG
* *
252235 TTTATATTTAGCGGCGCTTTTA
65 TTGATATTTAGCGGCACTTTTA
* * * *
252257 TCGCAAACGCCGCAATA-ATTTTGAGATTTAGCGGCGTTTTTTCCACA
1 TCACAAACGCCGCAATAGATGTTGATATTTAGCGGCGTTTTTACCACA
252304 CAAGCCGCAA
Statistics
Matches: 111, Mismatches: 21, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
85 26 0.23
86 13 0.12
87 71 0.64
88 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (86 bp):
TCACAAACGCCGCAATAGATGTTGATATTTAGCGGCGTTTTTACCACAAACGTCGCAATAGATGT
TGATATTTAGCGGCACTTTTA
Found at i:252311 original size:42 final size:42
Alignment explanation
Indices: 252070--252341 Score: 123
Period size: 43 Copynumber: 6.4 Consensus size: 42
252060 TGACGATATA
** ** *
252070 TAGCGGC-TTTTGTT-CACAAAACGCCGCAATAGGTGTTGCTATG
1 TAGCGGCGTTTT-TTCCAC-AAA-GCCGCAATAATTGTTGAGATT
* * **
252113 TAGCGGCGTTTTTAT-TACAAACGCTGCAATAGA-TGTTGATTTT
1 TAGCGGCGTTTTT-TCCACAAA-GCCGCAATA-ATTGTTGAGATT
* * **
252156 TAGCGGC-ATTTTTCTTACAAACGCCGCAAATAGA-TGTTGATTTT
1 TAGCGGCGTTTTTTC-CACAAA-GCCGC-AATA-ATTGTTGAGATT
* * * * * *
252200 TAGCGGCGTTTTTCCCACAAACGTCGCAGTAGTTGTTTATATT
1 TAGCGGCGTTTTTTCCACAAA-GCCGCAATAATTGTTGAGATT
* *
252243 TAGCGGCGCTTTTATCGCA-AACGCCGCAATAATT-TTGAGATT
1 TAGCGGCG-TTTTTTC-CACAAAGCCGCAATAATTGTTGAGATT
252285 TAGCGGCGTTTTTTCCACACAAGCCGC-A-AATGTGTTGAGATT
1 TAGCGGCGTTTTTTCCACA-AAGCCGCAATAAT-TGTTGAGATT
** *
252327 TCCCGACGTTTTTTC
1 TAGCGGCGTTTTTTC
252342 ATACAAAGGT
Statistics
Matches: 186, Mismatches: 29, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
40 5 0.03
41 10 0.05
42 44 0.24
43 73 0.39
44 47 0.25
45 7 0.04
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (42 bp):
TAGCGGCGTTTTTTCCACAAAGCCGCAATAATTGTTGAGATT
Found at i:252813 original size:21 final size:21
Alignment explanation
Indices: 252789--252829 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
252779 GTTACTGCCT
* *
252789 CTCTCTGTGCTTCCGTTGCTG
1 CTCTCTCTGCTTCCCTTGCTG
252810 CTCTCTCTGCTTCCCTTGCT
1 CTCTCTCTGCTTCCCTTGCT
252830 TCATTTTCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.00, C:0.39, G:0.17, T:0.44
Consensus pattern (21 bp):
CTCTCTCTGCTTCCCTTGCTG
Found at i:254346 original size:41 final size:41
Alignment explanation
Indices: 254244--254357 Score: 108
Period size: 42 Copynumber: 2.8 Consensus size: 41
254234 ATCCAAAAAT
* * * **
254244 CACTAAAGTATAACTTTTTAGCGGCGTTTTTTACTAAACGC
1 CACTAAAATATAATTTTTTACCGGCGTTTTTTAAAAAACGC
*
254285 CAC-AAAAT-TAAGAGTATTTTA-CGGCGTTTTTCTAAAAAACGC
1 CACTAAAATAT-A-A-TTTTTTACCGGCGTTTTT-TAAAAAACGC
*
254327 CACTAAAATATTATTTTTTACCGGCGTTTTT
1 CACTAAAATATAATTTTTTACCGGCGTTTTT
254358 GGATACAAAC
Statistics
Matches: 59, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
39 1 0.02
40 5 0.08
41 20 0.34
42 27 0.46
43 5 0.08
44 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.38
Consensus pattern (41 bp):
CACTAAAATATAATTTTTTACCGGCGTTTTTTAAAAAACGC
Found at i:255615 original size:41 final size:40
Alignment explanation
Indices: 255566--255689 Score: 158
Period size: 41 Copynumber: 3.0 Consensus size: 40
255556 ATTTAACATT
* *
255566 TTGCGGCGTTTATACAAAAAAAACCACTATTGATTACACTA
1 TTGCGGCGTTTGT-CAAAAAAAGCCACTATTGATTACACTA
* * *
255607 TTGTGGCGTTTGTTAAAAAATGCCACTATTGATTAACACTA
1 TTGCGGCGTTTGTCAAAAAAAGCCACTATTGATT-ACACTA
* * *
255648 TTGCGGCGTTTGTCTAAAAACGCCACTATTGATTATACTA
1 TTGCGGCGTTTGTCAAAAAAAGCCACTATTGATTACACTA
255688 TT
1 TT
255690 ACGGTATTTG
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
40 25 0.35
41 47 0.65
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (40 bp):
TTGCGGCGTTTGTCAAAAAAAGCCACTATTGATTACACTA
Found at i:255780 original size:42 final size:42
Alignment explanation
Indices: 255728--255950 Score: 226
Period size: 42 Copynumber: 5.4 Consensus size: 42
255718 ATGTGTAATA
*
255728 TATTACGGTGTTTTTGGTATAAACGCCGCTAATTTACCACTC
1 TATTGCGGTGTTTTTGGTATAAACGCCGCTAATTTACCACTC
* * * *
255770 TATT-CTGGTG-TTTTGGCTA-AATCGCCACAAAATTTA-TACTC
1 TATTGC-GGTGTTTTTGG-TATAAACGCCGC-TAATTTACCACTC
* *
255811 TATTGCGGTGTTTGTGGTATAAACGCCGCTAATTTACCACTA
1 TATTGCGGTGTTTTTGGTATAAACGCCGCTAATTTACCACTC
* * *
255853 TATTGCGGTG-TTTTGGCTA-AATCGCCGCAAAATTTA-TACTC
1 TATTGCGGTGTTTTTGG-TATAAACGCCGC-TAATTTACCACTC
* * *
255894 TATTGCGGCGTTTGTGGTATAAACGCCGCTAATTTACCACCC
1 TATTGCGGTGTTTTTGGTATAAACGCCGCTAATTTACCACTC
*
255936 TATTGCGGCGTTTTT
1 TATTGCGGTGTTTTT
255951 ACAAAACCGC
Statistics
Matches: 147, Mismatches: 22, Indels: 24
0.76 0.11 0.12
Matches are distributed among these distances:
41 67 0.46
42 80 0.54
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (42 bp):
TATTGCGGTGTTTTTGGTATAAACGCCGCTAATTTACCACTC
Found at i:255962 original size:41 final size:40
Alignment explanation
Indices: 255747--255965 Score: 160
Period size: 41 Copynumber: 5.3 Consensus size: 40
255737 GTTTTTGGTA
* **
255747 TAAACGCCGCTAATTTACCACTCTATT-CTGGTGTTTTGGC
1 TAAACGCCGCTAATTTACCACTCTATTGC-GGCGTTTTTAC
* * * *
255787 TAAATCGCCACAAAATTTA-TACTCTATTGCGGTGTTTGTGGTA-
1 TAAA-CGCCGC-TAATTTACCACTCTATTGCGGCGTTT-T--TAC
* * **
255830 TAAACGCCGCTAATTTACCACTATATTGCGGTGTTTTGGC
1 TAAACGCCGCTAATTTACCACTCTATTGCGGCGTTTTTAC
* *
255870 TAAATCGCCGCAAAATTTA-TACTCTATTGCGGCGTTTGTGGTA-
1 TAAA-CGCCGC-TAATTTACCACTCTATTGCGGCGTTT-T--TAC
*
255913 TAAACGCCGCTAATTTACCACCCTATTGCGGCGTTTTTAC
1 TAAACGCCGCTAATTTACCACTCTATTGCGGCGTTTTTAC
*
255953 AAAACCGCCGCTA
1 TAAA-CGCCGCTA
255966 TATGTCAACT
Statistics
Matches: 142, Mismatches: 21, Indels: 31
0.73 0.11 0.16
Matches are distributed among these distances:
39 2 0.01
40 11 0.08
41 63 0.44
42 58 0.41
43 8 0.06
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (40 bp):
TAAACGCCGCTAATTTACCACTCTATTGCGGCGTTTTTAC
Found at i:255980 original size:83 final size:83
Alignment explanation
Indices: 255728--255949 Score: 365
Period size: 83 Copynumber: 2.7 Consensus size: 83
255718 ATGTGTAATA
* *
255728 TATTACGGTGTTTTTGGTATAAACGCCGCTAATTTACCACTCTATT-CTGGTGTTTTGGCTAAAT
1 TATTGCGGTGTTTGTGGTATAAACGCCGCTAATTTACCACTCTATTGC-GGTGTTTTGGCTAAAT
*
255792 CGCCACAAAATTTATACTC
65 CGCCGCAAAATTTATACTC
*
255811 TATTGCGGTGTTTGTGGTATAAACGCCGCTAATTTACCACTATATTGCGGTGTTTTGGCTAAATC
1 TATTGCGGTGTTTGTGGTATAAACGCCGCTAATTTACCACTCTATTGCGGTGTTTTGGCTAAATC
255876 GCCGCAAAATTTATACTC
66 GCCGCAAAATTTATACTC
* * *
255894 TATTGCGGCGTTTGTGGTATAAACGCCGCTAATTTACCACCCTATTGCGGCGTTTT
1 TATTGCGGTGTTTGTGGTATAAACGCCGCTAATTTACCACTCTATTGCGGTGTTTT
255950 TACAAAACCG
Statistics
Matches: 130, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
83 129 0.99
84 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (83 bp):
TATTGCGGTGTTTGTGGTATAAACGCCGCTAATTTACCACTCTATTGCGGTGTTTTGGCTAAATC
GCCGCAAAATTTATACTC
Found at i:256890 original size:41 final size:41
Alignment explanation
Indices: 256843--257076 Score: 238
Period size: 41 Copynumber: 5.7 Consensus size: 41
256833 AATACTATAC
* * *
256843 TTTAGTGGCATTTGTATAAAAACGCCGCTAAAGAATCGTAA
1 TTTAGTGGCATTTTTATACAAACGCCGCTAAAGACTCGTAA
* * * *
256884 TGTAGTGGCGTTTTTATACAAACGCCGCTATAA-ACTAGTAT
1 TTTAGTGGCATTTTTATACAAACGCCGCTA-AAGACTCGTAA
* * *
256925 TTTAGTGGCGTTTTTATACAAACGCCGCTATAGACTCGTAC
1 TTTAGTGGCATTTTTATACAAACGCCGCTAAAGACTCGTAA
* * * *
256966 TTTAGTGGCATTTTTACACAAACGCCGCTATAGACACGTAC
1 TTTAGTGGCATTTTTATACAAACGCCGCTAAAGACTCGTAA
* * * *
257007 TTT-GTGGCGTTTTAATACCAAACGCCGCTATAGACTCGTAC
1 TTTAGTGGCATTTTTATA-CAAACGCCGCTAAAGACTCGTAA
** *
257048 TTTAGTGGTGTTTTAATACCAAACGCCGC
1 TTTAGTGGCATTTTTATA-CAAACGCCGC
257077 AATTGTCATA
Statistics
Matches: 170, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
40 12 0.07
41 132 0.78
42 26 0.15
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (41 bp):
TTTAGTGGCATTTTTATACAAACGCCGCTAAAGACTCGTAA
Found at i:256950 original size:82 final size:82
Alignment explanation
Indices: 256809--257076 Score: 312
Period size: 82 Copynumber: 3.3 Consensus size: 82
256799 TACATATAGC
* * * * *
256809 GGCGTTTTTGA-ACAAACGTCG-TAAAATACTA-TACTTTAGTGGCATTTGTATAAAAACGCCGC
1 GGCGTTTTT-ATACAAACGCCGCTATAA-ACTAGTACTTTAGTGGCGTTTTTATACAAACGCCGC
* * * *
256871 TAAAGAATCGTAATGTAGT
64 TATAGACTCGTACTTTAGT
*
256890 GGCGTTTTTATACAAACGCCGCTATAAACTAGTATTTTAGTGGCGTTTTTATACAAACGCCGCTA
1 GGCGTTTTTATACAAACGCCGCTATAAACTAGTACTTTAGTGGCGTTTTTATACAAACGCCGCTA
256955 TAGACTCGTACTTTAGT
66 TAGACTCGTACTTTAGT
* * * *
256972 GGCATTTTTACACAAACGCCGCTATAGAC-ACGTACTTT-GTGGCGTTTTAATACCAAACGCCGC
1 GGCGTTTTTATACAAACGCCGCTATAAACTA-GTACTTTAGTGGCGTTTTTATA-CAAACGCCGC
257035 TATAGACTCGTACTTTAGT
64 TATAGACTCGTACTTTAGT
* *
257054 GGTGTTTTAATACCAAACGCCGC
1 GGCGTTTTTATA-CAAACGCCGC
257077 AATTGTCATA
Statistics
Matches: 162, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
80 1 0.01
81 36 0.22
82 115 0.71
83 10 0.06
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (82 bp):
GGCGTTTTTATACAAACGCCGCTATAAACTAGTACTTTAGTGGCGTTTTTATACAAACGCCGCTA
TAGACTCGTACTTTAGT
Found at i:257029 original size:123 final size:124
Alignment explanation
Indices: 256840--257076 Score: 327
Period size: 123 Copynumber: 1.9 Consensus size: 124
256830 TAAAATACTA
* *
256840 TACTTTAGTGGCATTTGTATAAAAACGCCGCTAAAGAATCGTAATGTAGTGGCGTTTTTATACAA
1 TACTTTAGTGGCATTTGTACAAAAACGCCGCTAAAGAATCGTAATGTAGTGGCGTTTTAATACAA
* *
256905 ACGCCGCTATAAACTAGTATTTTAGTGGCGTTTTTATA-CAAACGCCGCTATAGACTCG
66 ACGCCGCTATAAACTAGTACTTTAGTGGCGTTTTAATACCAAACGCCGCTATAGACTCG
* * * * *
256963 TACTTTAGTGGCATTTTTACACAAACGCCGCTATAGACA-CGTACT-TTGTGGCGTTTTAATACC
1 TACTTTAGTGGCATTTGTACAAAAACGCCGCTAAAGA-ATCGTAATGTAGTGGCGTTTTAATA-C
* * *
257026 AAACGCCGCTATAGACTCGTACTTTAGTGGTGTTTTAATACCAAACGCCGC
64 AAACGCCGCTATAAACTAGTACTTTAGTGGCGTTTTAATACCAAACGCCGC
257077 AATTGTCATA
Statistics
Matches: 99, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
122 14 0.14
123 74 0.75
124 11 0.11
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (124 bp):
TACTTTAGTGGCATTTGTACAAAAACGCCGCTAAAGAATCGTAATGTAGTGGCGTTTTAATACAA
ACGCCGCTATAAACTAGTACTTTAGTGGCGTTTTAATACCAAACGCCGCTATAGACTCG
Found at i:262856 original size:128 final size:128
Alignment explanation
Indices: 262681--263033 Score: 369
Period size: 128 Copynumber: 2.7 Consensus size: 128
262671 AAGATAATTA
* *
262681 GCGGCGTTTATATCCAAAAACGCCGCTATAGGTCTGCCTTTTTGCGGCGTTTGTGTTC-AAAAAC
1 GCGGCGTTTGT-TCCAAAAACGCCGCTATAGGTCTGCCTTTTTGCGGCGTTTGT-ATCAAAAAAC
* * * * *
262745 GCCGTTATAGGTCTGACCTTTTGCAGCGTTTGTGTCCAAAAACACCGTTATAGGTC-TGACCTTT
64 GCCGCTATAGATCTGACCTTTTGCAGCGTTT-TGTCCAAAAACACCGCTATAGATCATAACCTTT
262809 T
128 T
*
262810 GCGGCGTTTGTTCTAAAAACGCCAG-TATAGGTCTG-CTCTTTTGCGGCGTTTGTATCAAAAAAC
1 GCGGCGTTTGTTCCAAAAACGCC-GCTATAGGTCTGCCT-TTTTGCGGCGTTTGTATCAAAAAAC
* * * * * * * *
262873 GCCGCTATAGATCTGACCTTTTGCGGTGTTTTTTCTAGAAACGCCGCTATATATCATAACTTTTT
64 GCCGCTATAGATCTGACCTTTTGCAGCGTTTTGTCCAAAAACACCGCTATAGATCATAACCTTTT
* * *
262938 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATATCGACC-TTTTGCGACGTTTGT-TCAAAAAAC
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGGTCT-G-CCTTTTTGCGGCGTTTGTATCAAAAAAC
* * * *
263001 GACG-TAATAGATATTGACCTATTGCGGCGTTTT
64 GCCGCT-ATAGAT-CTGACCTTTTGCAGCGTTTT
263034 TTGTTCTCAA
Statistics
Matches: 190, Mismatches: 24, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
127 23 0.12
128 123 0.65
129 43 0.23
131 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.34
Consensus pattern (128 bp):
GCGGCGTTTGTTCCAAAAACGCCGCTATAGGTCTGCCTTTTTGCGGCGTTTGTATCAAAAAACGC
CGCTATAGATCTGACCTTTTGCAGCGTTTTGTCCAAAAACACCGCTATAGATCATAACCTTTT
Found at i:262862 original size:85 final size:85
Alignment explanation
Indices: 262681--263001 Score: 366
Period size: 85 Copynumber: 3.8 Consensus size: 85
262671 AAGATAATTA
* *
262681 GCGGCGTTTATATCCAAAAACGCCGCTATAGGTCTG-CCTTTTTGCGGCGTTTGTGT-TCAAAAA
1 GCGGCGTTTGTATCCAAAAACGCCGCTATAGATCTGACC-TTTTGCGGCGTTTGT-TCT-AAAAA
*
262744 CGCCGTTATAGGTCTGAC-CTTTT
63 CGCCGCTATAGGTCTG-CTCTTTT
* * * * *
262767 GCAGCGTTTGTGTCCAAAAACACCGTTATAGGTCTGACCTTTTGCGGCGTTTGTTCTAAAAACGC
1 GCGGCGTTTGTATCCAAAAACGCCGCTATAGATCTGACCTTTTGCGGCGTTTGTTCTAAAAACGC
262832 CAG-TATAGGTCTGCTCTTTT
66 C-GCTATAGGTCTGCTCTTTT
* * * *
262852 GCGGCGTTTGTATCAAAAAACGCCGCTATAGATCTGACCTTTTGCGGTGTTTTTTCTAGAAACGC
1 GCGGCGTTTGTATCCAAAAACGCCGCTATAGATCTGACCTTTTGCGGCGTTTGTTCTAAAAACGC
** *
262917 CGCTATATATCATAACT-TTTT
66 CGCTATAGGTC-T-GCTCTTTT
* * *
262938 GCGGCGTTTGT-TCCAAAAACGCCGCTATAGATATCGACCTTTTGCGACGTTTGTTCAAAAAACG
1 GCGGCGTTTGTATCCAAAAACGCCGCTATAGATCT-GACCTTTTGCGGCGTTTGTTCTAAAAACG
263002 ACGTAATAGA
Statistics
Matches: 203, Mismatches: 24, Indels: 16
0.84 0.10 0.07
Matches are distributed among these distances:
84 2 0.01
85 109 0.54
86 88 0.43
87 4 0.02
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33
Consensus pattern (85 bp):
GCGGCGTTTGTATCCAAAAACGCCGCTATAGATCTGACCTTTTGCGGCGTTTGTTCTAAAAACGC
CGCTATAGGTCTGCTCTTTT
Found at i:262999 original size:43 final size:42
Alignment explanation
Indices: 262681--263032 Score: 336
Period size: 43 Copynumber: 8.2 Consensus size: 42
262671 AAGATAATTA
* * *
262681 GCGGCGTTTATATCCAAAAACGCCGCTATAGGTCTG-CCTTTTT
1 GCGGCGTTTGT-TCAAAAAACGCCGCTATAGATCTGACC-TTTT
* *
262724 GCGGCGTTTGTGTTC-AAAAACGCCGTTATAGGTCTGACCTTTT
1 GCGGCG-TT-TGTTCAAAAAACGCCGCTATAGATCTGACCTTTT
* * * * *
262767 GCAGCGTTTGTGTCCAAAAACACCGTTATAGGTCTGACCTTTT
1 GCGGCGTTTGT-TCAAAAAACGCCGCTATAGATCTGACCTTTT
* *
262810 GCGGCGTTTGTTCTAAAAACGCCAG-TATAGGTCTG-CTCTTTT
1 GCGGCGTTTGTTCAAAAAACGCC-GCTATAGATCTGAC-CTTTT
262852 GCGGCGTTTGTATCAAAAAACGCCGCTATAGATCTGACCTTTT
1 GCGGCGTTTGT-TCAAAAAACGCCGCTATAGATCTGACCTTTT
* * * * * * *
262895 GCGGTGTTTTTTCTAGAAACGCCGCTATATATCATAACTTTTT
1 GCGGCGTTTGTTCAAAAAACGCCGCTATAGATC-TGACCTTTT
* *
262938 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATATCGACCTTTT
1 GCGGCGTTTGTTCAAAAAACGCCGCTATAGATCT-GACCTTTT
* * * *
262981 GCGACGTTTGTTCAAAAAACGACG-TAATAGATATTGACCTATT
1 GCGGCGTTTGTTCAAAAAACGCCGCT-ATAGAT-CTGACCTTTT
263024 GCGGCGTTT
1 GCGGCGTTT
263033 TTTGTTCTCA
Statistics
Matches: 265, Mismatches: 30, Indels: 28
0.82 0.09 0.09
Matches are distributed among these distances:
41 4 0.02
42 62 0.23
43 189 0.71
44 8 0.03
45 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.34
Consensus pattern (42 bp):
GCGGCGTTTGTTCAAAAAACGCCGCTATAGATCTGACCTTTT
Found at i:281323 original size:14 final size:15
Alignment explanation
Indices: 281296--281325 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
281286 TTAAAAATAT
281296 AAAATAAAATTATTA
1 AAAATAAAATTATTA
281311 AAAATAAAA-TATTA
1 AAAATAAAATTATTA
281325 A
1 A
281326 TTGTGGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAATAAAATTATTA
Found at i:289816 original size:21 final size:21
Alignment explanation
Indices: 289790--289945 Score: 120
Period size: 21 Copynumber: 7.6 Consensus size: 21
289780 GCGTTGCATT
*
289790 TCGCGTTGCGATAATTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
289811 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
* * ** **
289832 TCGCGTTACGAT-TTTCCAGT
1 TCGCGTTGCGATAGTTGAAAA
289852 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
* * ** **
289873 TTGCGTTGCGAT-TTTCCATT
1 TCGCGTTGCGATAGTTGAAAA
* *****
289893 TCGCGTTGCGAT-TTTCCGTT
1 TCGCGTTGCGATAGTTGAAAA
289913 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
289934 TCGCGTTGCGAT
1 TCGCGTTGCGAT
289946 TTTCCAGTTC
Statistics
Matches: 106, Mismatches: 27, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
20 47 0.44
21 59 0.56
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.35
Consensus pattern (21 bp):
TCGCGTTGCGATAGTTGAAAA
Found at i:289857 original size:20 final size:20
Alignment explanation
Indices: 289832--290013 Score: 163
Period size: 20 Copynumber: 8.9 Consensus size: 20
289822 TAGTTGAAAA
*
289832 TCGCGTTACGATTTTCCAGT
1 TCGCGTTGCGATTTTCCAGT
*** *
289852 TCGCGTTGCGATAGTTGAAAAT
1 TCGCGTTGCGAT--TTTCCAGT
*
289874 T-GCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCAGT
289893 TCGCGTTGCGATTTTCC-GTT
1 TCGCGTTGCGATTTTCCAG-T
* ** **
289913 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGAT-TTTCCAGT
289934 TCGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCAGT
289954 TCGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCAGT
* *
289974 TCGCGTTGCGATAGTCTACAGT
1 TCGCGTTGCGAT--TTTCCAGT
289996 T-GTCGTTGCGATTTTCCA
1 TCG-CGTTGCGATTTTCCA
290014 AATTCGTTAC
Statistics
Matches: 129, Mismatches: 24, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
19 5 0.04
20 78 0.60
21 25 0.19
22 21 0.16
ACGTcount: A:0.15, C:0.21, G:0.25, T:0.38
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCAGT
Found at i:289858 original size:41 final size:41
Alignment explanation
Indices: 289811--289904 Score: 161
Period size: 41 Copynumber: 2.3 Consensus size: 41
289801 TAATTGAAAA
289811 TCGCGTTGCGATAGTTGAAAATCGCGTTACGATTTTCCAGT
1 TCGCGTTGCGATAGTTGAAAATCGCGTTACGATTTTCCAGT
* * *
289852 TCGCGTTGCGATAGTTGAAAATTGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATAGTTGAAAATCGCGTTACGATTTTCCAGT
289893 TCGCGTTGCGAT
1 TCGCGTTGCGAT
289905 TTTCCGTTTC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.36
Consensus pattern (41 bp):
TCGCGTTGCGATAGTTGAAAATCGCGTTACGATTTTCCAGT
Found at i:289926 original size:61 final size:61
Alignment explanation
Indices: 289789--290019 Score: 295
Period size: 61 Copynumber: 3.7 Consensus size: 61
289779 CGCGTTGCAT
* * ** * *
289789 TTCGCGTTGCGATAATTGAAAATCGCGTTGCGATAGTTGAAAATCGCGTTACGATTTTCCAG
1 TTCGCGTTGCGATAGTTGAAAATCGCGTTGCGAT-TTTCCAATTCGCGTTGCGATTTTCCAG
* *
289851 TTCGCGTTGCGATAGTTGAAAATTGCGTTGCGATTTTCCATTTCGCGTTGCGATTTTCC-G
1 TTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCAATTCGCGTTGCGATTTTCCAG
*
289911 TTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCAGTTCGCGTTGCGATTTTCCAG
1 -TTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCAATTCGCGTTGCGATTTTCCAG
* * *
289973 TTCGCGTTGCGATAGTCT-ACAGTTGTCGTTGCGATTTTCCAAATTCG
1 TTCGCGTTGCGATAGT-TGAAAATCG-CGTTGCGATTTTCC-AATTCG
290020 TTACGATAGT
Statistics
Matches: 150, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
60 1 0.01
61 96 0.64
62 48 0.32
63 5 0.03
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.37
Consensus pattern (61 bp):
TTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCAATTCGCGTTGCGATTTTCCAG
Found at i:290002 original size:22 final size:22
Alignment explanation
Indices: 289977--290048 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 22
289967 TTCCAGTTCG
289977 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
* * **
289999 CGTTGCGAT--TTTCCAAAT-T
1 CGTTGCGATAGTCTACAGTTGT
*
290018 CGTTACGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
*
290040 CATTGCGAT
1 CGTTGCGAT
290049 TTTCCAAATT
Statistics
Matches: 36, Mismatches: 11, Indels: 6
0.68 0.21 0.11
Matches are distributed among these distances:
19 9 0.25
20 5 0.14
21 5 0.14
22 17 0.47
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (22 bp):
CGTTGCGATAGTCTACAGTTGT
Found at i:290038 original size:41 final size:41
Alignment explanation
Indices: 289957--290062 Score: 160
Period size: 41 Copynumber: 2.6 Consensus size: 41
289947 TTCCAGTTCG
* *
289957 CGTTGCGATTTTCC-AGTTCGCGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATTTTCCAAATT--CGTTACGATAGTCTACAGTTGT
289999 CGTTGCGATTTTCCAAATTCGTTACGATAGTCTACAGTTGT
1 CGTTGCGATTTTCCAAATTCGTTACGATAGTCTACAGTTGT
*
290040 CATTGCGATTTTCCAAATTCGTT
1 CGTTGCGATTTTCCAAATTCGTT
290063 GCGAAAATCG
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
41 43 0.72
42 14 0.23
43 3 0.05
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (41 bp):
CGTTGCGATTTTCCAAATTCGTTACGATAGTCTACAGTTGT
Found at i:290066 original size:19 final size:19
Alignment explanation
Indices: 289998--290066 Score: 57
Period size: 19 Copynumber: 3.5 Consensus size: 19
289988 TCTACAGTTG
289998 TCGTTGCGATTTTCCAAAT
1 TCGTTGCGATTTTCCAAAT
* * * **
290017 TCGTTACGATAGTCTACAGTT
1 TCGTTGCGAT--TTTCCAAAT
*
290038 GTCATTGCGATTTTCCAAAT
1 -TCGTTGCGATTTTCCAAAT
290058 TCGTTGCGA
1 TCGTTGCGA
290067 AAATCGCGTT
Statistics
Matches: 35, Mismatches: 12, Indels: 6
0.66 0.23 0.11
Matches are distributed among these distances:
19 17 0.49
20 5 0.14
21 5 0.14
22 8 0.23
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (19 bp):
TCGTTGCGATTTTCCAAAT
Found at i:290095 original size:20 final size:20
Alignment explanation
Indices: 290070--290121 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
290060 GTTGCGAAAA
290070 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCATT
*
290090 TCGCGTTGCGATTTTTCATT
1 TCGCGTTGCGATTTTCCATT
290110 TCGCGTTGCGAT
1 TCGCGTTGCGAT
290122 AGTCTACAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.44
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCATT
Found at i:290212 original size:95 final size:94
Alignment explanation
Indices: 290017--290216 Score: 206
Period size: 95 Copynumber: 2.1 Consensus size: 94
290007 TTTTCCAAAT
* * *
290017 TCGTTACGATAGTCTACAGTTGTCATTGCGATTTTCCAAATTCGTTGCGAAAATCGCGTTGCGAT
1 TCGTTGCGATAGTCTACAGTTGTCATTGCGATTTTCCAAATTCGTTGC-AAAATCACGTTACGAT
* * ** * * * *
290082 TTTCCATTTCGCGTTGCGATTTTTCATTTC
65 GTTCAAAATCGCGTTGCGATTCTACAGTTA
* * **
290112 GCGTTGCGATAGTCTACAGTTGTCGTTGCGATTTTCCAAATTCGTT-C-ATTTCACGTTACGATA
1 TCGTTGCGATAGTCTACAGTTGTCATTGCGATTTTCCAAATTCGTTGCAAAATCACGTTACGAT-
*
290175 GTTGAAAATCGCGTTGCGATAGTCTACAGTTA
65 GTTCAAAATCGCGTTGCGAT--TCTACAGTTA
290207 TCGTTGCGAT
1 TCGTTGCGAT
290217 TTTCCAAATT
Statistics
Matches: 85, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
92 11 0.13
93 15 0.18
94 1 0.01
95 58 0.68
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (94 bp):
TCGTTGCGATAGTCTACAGTTGTCATTGCGATTTTCCAAATTCGTTGCAAAATCACGTTACGATG
TTCAAAATCGCGTTGCGATTCTACAGTTA
Found at i:290339 original size:6 final size:6
Alignment explanation
Indices: 290328--290355 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
290318 AGACACGTAT
290328 GACCAC GACCAC GACCAC GACCAC GACC
1 GACCAC GACCAC GACCAC GACCAC GACC
290356 CGAGACGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.50, G:0.18, T:0.00
Consensus pattern (6 bp):
GACCAC
Found at i:291001 original size:22 final size:23
Alignment explanation
Indices: 290972--291026 Score: 87
Period size: 22 Copynumber: 2.5 Consensus size: 23
290962 AATTTGGAAA
290972 ATCGCAACGAA-AACTGTAGACT
1 ATCGCAACGAACAACTGTAGACT
*
290994 TTCGCAAC-AACAACTGTAGACT
1 ATCGCAACGAACAACTGTAGACT
291016 ATCGCAACGAA
1 ATCGCAACGAA
291027 TTTGGAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 2 0.07
22 25 0.86
23 2 0.07
ACGTcount: A:0.40, C:0.25, G:0.16, T:0.18
Consensus pattern (23 bp):
ATCGCAACGAACAACTGTAGACT
Found at i:291081 original size:20 final size:20
Alignment explanation
Indices: 291056--291210 Score: 130
Period size: 20 Copynumber: 7.6 Consensus size: 20
291046 ATTGTAGACT
291056 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
** ** *
291076 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGGAA-A
291097 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
** ** *
291117 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGGAA-A
*
291138 ATCGCAACGCAAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
** ** *
291158 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGGAA-A
*
291179 ATAGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
291199 ATCGCAACGCGA
1 ATCGCAACGCGA
291211 TTTTCAACTA
Statistics
Matches: 98, Mismatches: 34, Indels: 6
0.71 0.25 0.04
Matches are distributed among these distances:
20 55 0.56
21 43 0.44
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.17
Consensus pattern (20 bp):
ATCGCAACGCGAAATGGAAA
Found at i:291102 original size:21 final size:21
Alignment explanation
Indices: 291076--291231 Score: 138
Period size: 21 Copynumber: 7.6 Consensus size: 21
291066 GAAATGGAAA
291076 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
** ** *
291097 ATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGATTTTCAACT
291117 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
* ** ** *
291138 ATCGCAACGCAAAATGGAA-A
1 ATCGCAACGCGATTTTCAACT
291158 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
* ** ** *
291179 ATAGCAACGCGAAATGGAA-A
1 ATCGCAACGCGATTTTCAACT
291199 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
291220 ATCGCAACGCGA
1 ATCGCAACGCGA
291232 AATGCAACGC
Statistics
Matches: 98, Mismatches: 34, Indels: 6
0.71 0.25 0.04
Matches are distributed among these distances:
20 43 0.44
21 55 0.56
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGATTTTCAACT
Found at i:291252 original size:41 final size:41
Alignment explanation
Indices: 291013--291235 Score: 355
Period size: 41 Copynumber: 5.5 Consensus size: 41
291003 ACAACTGTAG
* *
291013 ACTATCGCAA--CGAATTTGGAAAATCGCAACGAC-ATTGT-A
1 ACTATCGCAACGCGAA-ATGGAAAATCGCAACG-CGATTTTCA
291052 GACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
1 -ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
291094 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
*
291135 ACTATCGCAACGCAAAATGGAAAATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
*
291176 ACTATAGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
291217 ACTATCGCAACGCGAAATG
1 ACTATCGCAACGCGAAATG
291236 CAACGCGAAT
Statistics
Matches: 173, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
40 11 0.06
41 157 0.91
42 5 0.03
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (41 bp):
ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
Found at i:312500 original size:16 final size:16
Alignment explanation
Indices: 312476--312509 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
312466 TATCACCGAT
*
312476 CGAATTTCACTATTCA
1 CGAAATTCACTATTCA
312492 CGAAATTCACTATTCA
1 CGAAATTCACTATTCA
312508 CG
1 CG
312510 TGAATAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (16 bp):
CGAAATTCACTATTCA
Found at i:326547 original size:96 final size:99
Alignment explanation
Indices: 326385--326561 Score: 272
Period size: 97 Copynumber: 1.8 Consensus size: 99
326375 CCCACATTAG
* * *
326385 AAGAAGAAGAAGACGACATGGGTTAATTTTGAATTTACACGTGATTTGTTTGATTTTTTTTTA-T
1 AAGAAGAAAAAGAAGACATGGGTTAATTTTGAATTTACACGTGATTTGTTTGATTTTTTTTCATT
326449 TTTT-AATTGCTAACTTAGGAATAAGAAGAAGAA
66 TTTTAAATTGCTAACTTAGGAATAAGAAGAAGAA
* *
326482 AAGAAGAAAAAGAAGACATGTGTT-GTTTTGAATTTACACGTGGATTTGTTT-ATTTTTTTTCAT
1 AAGAAGAAAAAGAAGACATGGGTTAATTTTGAATTTACACGT-GATTTGTTTGATTTTTTTTCAT
326545 TTTTTAAATTGCTAACT
65 TTTTTAAATTGCTAACT
326562 CAGACTTTGT
Statistics
Matches: 72, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
96 26 0.36
97 35 0.49
98 11 0.15
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (99 bp):
AAGAAGAAAAAGAAGACATGGGTTAATTTTGAATTTACACGTGATTTGTTTGATTTTTTTTCATT
TTTTAAATTGCTAACTTAGGAATAAGAAGAAGAA
Found at i:340135 original size:19 final size:17
Alignment explanation
Indices: 340113--340150 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
340103 TAATATATAT
*
340113 ATATATATATTAAAAAA
1 ATATATAAATTAAAAAA
340130 ATATATAAATTAAAAAA
1 ATATATAAATTAAAAAA
340147 ATAT
1 ATAT
340151 GAACCAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
ATATATAAATTAAAAAA
Found at i:342683 original size:288 final size:288
Alignment explanation
Indices: 342166--342726 Score: 806
Period size: 288 Copynumber: 1.9 Consensus size: 288
342156 TTTTTGTAGG
* **
342166 AAAATATCTTCTAGCAACTTCGTTTCAGTAAATCAAACATTGGGTTTTTATAGTTAAAGAGGAAA
1 AAAATATCTTCCAGCAACTTCGTTTCAGTAAATCAAACATTGGGTTTTTATAGTTAAAGAAAAAA
* *
342231 GTGGGAGTTTTCACCAAAACCACCAAGGAAAGGAGTTCGGCTAAGCAAAGAGAGTTTCATTTTGG
66 GT-GGAGTTTTCACCAAAACCACCAAGGAAAGCAGTTCGGCTAAGCAAAGAGAGTTTCATTTCGG
* * ** *
342296 GATCCTAACACCAAGGTAATGTGTTTCTAATCCTTTGAAGTGTTACTATTTTAATAAATATGAAA
130 GATCCTAACACCAAAGTAATGTATTTCTAATCCTTTGAAGTGTTAAGATTATAATAAATATGAAA
* * *
342361 TTTGGCTAAGATTTGAGTAATTAAGCATTTTAGGGTTTATTTTTGATATTATAATCAAATTGT-T
195 TTTAGCTAAGATTTGAGTAATTAAGCATTTTAGGGTTTATTTTTGATATCATAATCAAATTATAT
342425 CTTTAGAAGTTAAACTTACTTTGATCATTC
260 -TTTAGAAGTTAAACTTACTTTGATCATTC
* * *
342455 AAAATATCTTCCAGCAACGTT-GTTTTAGTAAATTAAACCTTGGGTTTTTATAGTTAAAGAAAAA
1 AAAATATCTTCCAGCAAC-TTCGTTTCAGTAAATCAAACATTGGGTTTTTATAGTTAAAG-AAAA
* *
342519 AAGT-GAGTTTTCACCAAAATCACCAATGAAAGCAGTTCGGCTAAGCAAAGAGAGCTTT-ATTTC
64 AAGTGGAGTTTTCACCAAAACCACCAAGGAAAGCAGTTCGGCTAAGCAAAGAGAG-TTTCATTTC
* * * *
342582 GGGATCCTAGCACCAAAGTAGTGTATTTCTAATCCTTTGAAGTGTTAAGATTATGATAAGTATGA
128 GGGATCCTAACACCAAAGTAATGTATTTCTAATCCTTTGAAGTGTTAAGATTATAATAAATATGA
* * * * *
342647 AGTTTAGCTAATATTTGAGTAATTAAGCATTTTAGGGTTTGTTTTTTATATCATGATCAAATTAT
193 AATTTAGCTAAGATTTGAGTAATTAAGCATTTTAGGGTTTATTTTTGATATCATAATCAAATTAT
342712 ATTTTAGAAGTTAAA
258 ATTTTAGAAGTTAAA
342727 AAGACGTTTT
Statistics
Matches: 241, Mismatches: 27, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
288 177 0.73
289 56 0.23
290 8 0.03
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.36
Consensus pattern (288 bp):
AAAATATCTTCCAGCAACTTCGTTTCAGTAAATCAAACATTGGGTTTTTATAGTTAAAGAAAAAA
GTGGAGTTTTCACCAAAACCACCAAGGAAAGCAGTTCGGCTAAGCAAAGAGAGTTTCATTTCGGG
ATCCTAACACCAAAGTAATGTATTTCTAATCCTTTGAAGTGTTAAGATTATAATAAATATGAAAT
TTAGCTAAGATTTGAGTAATTAAGCATTTTAGGGTTTATTTTTGATATCATAATCAAATTATATT
TTAGAAGTTAAACTTACTTTGATCATTC
Found at i:345297 original size:17 final size:17
Alignment explanation
Indices: 345277--345315 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
345267 AAATAATCAA
345277 TAAAAAATATAAAAAA-T
1 TAAAAAATA-AAAAAATT
*
345294 TAAAATATAAAAAAATT
1 TAAAAAATAAAAAAATT
345311 TAAAA
1 TAAAA
345316 TTTCTAGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
TAAAAAATAAAAAAATT
Found at i:353245 original size:12 final size:13
Alignment explanation
Indices: 353210--353257 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
353200 TAATTATCGG
353210 TATTTAATTTATCTT
1 TATTT-ATTTAT-TT
353225 TAATATTATTTA-TT
1 T-AT-TTATTTATTT
353239 TATTTATTTATTT
1 TATTTATTTATTT
353252 TATTTA
1 TATTTA
353258 CGTATTTTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
12 7 0.23
13 10 0.33
14 3 0.10
15 1 0.03
16 7 0.23
17 2 0.07
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (13 bp):
TATTTATTTATTT
Done.